Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22669.t1 | XP_003626426.1 | 92.9 | 127 | 9 | 0 | 60 | 186 | 1 | 127 | 1.00E-66 | 263.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22669.t1 | Q852K5 | 42.7 | 131 | 66 | 2 | 62 | 183 | 21 | 151 | 2.5e-26 | 120.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22669.t1 | G7L1U6 | 92.9 | 127 | 9 | 0 | 60 | 186 | 1 | 127 | 7.3e-67 | 263.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene22669 | 0.804988 | 1.66E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene22669 | 0.801988 | 6.94E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene22669 | 0.8101 | 1.36E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene22669 | 0.813202 | 2.88E-51 | -1.69E-46 |
| MS.gene051692 | MS.gene22669 | 0.814591 | 1.42E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene22669 | 0.829502 | 4.97E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene22669 | 0.817318 | 3.51E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene22669 | 0.806205 | 9.21E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene22669 | 0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene22669 | 0.831306 | 1.80E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene22669 | 0.854932 | 8.85E-62 | -1.69E-46 |
| MS.gene055397 | MS.gene22669 | 0.801671 | 8.07E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene22669 | 0.814212 | 1.73E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene22669 | 0.818366 | 2.03E-52 | -1.69E-46 |
| MS.gene056410 | MS.gene22669 | 0.801825 | 7.50E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene22669 | 0.803986 | 2.68E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene22669 | 0.832028 | 1.19E-55 | -1.69E-46 |
| MS.gene057123 | MS.gene22669 | 0.810561 | 1.08E-50 | -1.69E-46 |
| MS.gene057449 | MS.gene22669 | 0.804962 | 1.68E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene22669 | 0.802138 | 6.47E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene22669 | 0.811262 | 7.64E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene22669 | 0.826446 | 2.70E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene22669 | 0.827401 | 1.60E-54 | -1.69E-46 |
| MS.gene059597 | MS.gene22669 | 0.847172 | 1.37E-59 | -1.69E-46 |
| MS.gene05959 | MS.gene22669 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene22669 | 0.847542 | 1.08E-59 | -1.69E-46 |
| MS.gene059688 | MS.gene22669 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene22669 | 0.813857 | 2.07E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene22669 | 0.81419 | 1.75E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene22669 | 0.82528 | 5.11E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene22669 | 0.809279 | 2.05E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene22669 | 0.801503 | 8.73E-49 | -1.69E-46 |
| MS.gene061051 | MS.gene22669 | -0.848201 | 7.13E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22669.t1 | MTR_7g114920 | 92.913 | 127 | 9 | 0 | 60 | 186 | 1 | 127 | 5.31e-87 | 252 |
| MS.gene22669.t1 | MTR_1g100773 | 75.556 | 135 | 24 | 2 | 60 | 186 | 1 | 134 | 5.49e-70 | 209 |
| MS.gene22669.t1 | MTR_2g054650 | 53.125 | 128 | 45 | 5 | 62 | 185 | 4 | 120 | 7.84e-34 | 117 |
| MS.gene22669.t1 | MTR_4g053440 | 37.500 | 152 | 66 | 3 | 64 | 186 | 13 | 164 | 6.30e-30 | 108 |
| MS.gene22669.t1 | MTR_2g086190 | 43.056 | 144 | 66 | 5 | 56 | 186 | 4 | 144 | 6.97e-30 | 107 |
| MS.gene22669.t1 | MTR_1g060380 | 40.972 | 144 | 69 | 3 | 56 | 183 | 4 | 147 | 6.52e-29 | 105 |
| MS.gene22669.t1 | MTR_7g104320 | 38.776 | 147 | 61 | 3 | 64 | 183 | 15 | 159 | 2.32e-28 | 104 |
| MS.gene22669.t1 | MTR_0249s0070 | 33.537 | 164 | 82 | 4 | 47 | 183 | 5 | 168 | 9.23e-25 | 95.5 |
| MS.gene22669.t1 | MTR_0249s0070 | 34.839 | 155 | 74 | 4 | 56 | 183 | 6 | 160 | 1.10e-24 | 95.1 |
| MS.gene22669.t1 | MTR_2g098160 | 35.570 | 149 | 69 | 3 | 62 | 183 | 15 | 163 | 1.08e-23 | 92.4 |
| MS.gene22669.t1 | MTR_7g092400 | 35.333 | 150 | 68 | 4 | 62 | 183 | 103 | 251 | 9.06e-23 | 92.0 |
| MS.gene22669.t1 | MTR_3g028010 | 30.921 | 152 | 98 | 2 | 39 | 183 | 3 | 154 | 1.54e-22 | 89.4 |
| MS.gene22669.t1 | MTR_4g065570 | 34.646 | 127 | 61 | 3 | 79 | 183 | 2 | 128 | 1.10e-18 | 78.6 |
| MS.gene22669.t1 | MTR_8g036980 | 53.846 | 52 | 24 | 0 | 132 | 183 | 91 | 142 | 1.14e-16 | 73.6 |
| MS.gene22669.t1 | MTR_3g025570 | 50.000 | 46 | 23 | 0 | 125 | 170 | 2 | 47 | 4.43e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22669.t1 | AT1G12440 | 42.361 | 144 | 61 | 4 | 62 | 183 | 16 | 159 | 2.78e-32 | 114 |
| MS.gene22669.t1 | AT1G12440 | 42.361 | 144 | 61 | 4 | 62 | 183 | 16 | 159 | 2.78e-32 | 114 |
| MS.gene22669.t1 | AT1G12440 | 42.361 | 144 | 61 | 4 | 62 | 183 | 16 | 159 | 2.78e-32 | 114 |
| MS.gene22669.t1 | AT4G12040 | 40.397 | 151 | 61 | 4 | 62 | 183 | 16 | 166 | 2.57e-30 | 109 |
| MS.gene22669.t1 | AT4G12040 | 40.397 | 151 | 61 | 4 | 62 | 183 | 16 | 166 | 2.57e-30 | 109 |
| MS.gene22669.t1 | AT4G22820 | 35.000 | 160 | 77 | 2 | 51 | 183 | 8 | 167 | 5.55e-29 | 106 |
| MS.gene22669.t1 | AT4G22820 | 35.000 | 160 | 77 | 2 | 51 | 183 | 8 | 167 | 5.55e-29 | 106 |
| MS.gene22669.t1 | AT4G14225 | 44.800 | 125 | 59 | 4 | 62 | 186 | 5 | 119 | 2.36e-26 | 97.8 |
| MS.gene22669.t1 | AT4G25380 | 42.857 | 119 | 61 | 2 | 65 | 183 | 10 | 121 | 1.38e-25 | 96.3 |
| MS.gene22669.t1 | AT3G52800 | 39.241 | 158 | 66 | 5 | 56 | 183 | 4 | 161 | 2.04e-25 | 97.1 |
| MS.gene22669.t1 | AT3G52800 | 39.241 | 158 | 66 | 5 | 56 | 183 | 4 | 161 | 2.04e-25 | 97.1 |
| MS.gene22669.t1 | AT2G36320 | 38.732 | 142 | 69 | 4 | 64 | 187 | 15 | 156 | 2.07e-25 | 96.7 |
| MS.gene22669.t1 | AT2G27580 | 34.000 | 150 | 66 | 3 | 62 | 183 | 10 | 154 | 5.61e-24 | 92.8 |
| MS.gene22669.t1 | AT2G27580 | 34.000 | 150 | 66 | 3 | 62 | 183 | 10 | 154 | 5.61e-24 | 92.8 |
| MS.gene22669.t1 | AT3G12630 | 36.364 | 121 | 70 | 3 | 70 | 183 | 31 | 151 | 1.52e-20 | 84.0 |
| MS.gene22669.t1 | AT1G51200 | 34.000 | 150 | 71 | 3 | 62 | 183 | 15 | 164 | 8.00e-20 | 82.4 |
| MS.gene22669.t1 | AT1G51200 | 34.000 | 150 | 71 | 3 | 62 | 183 | 15 | 164 | 8.00e-20 | 82.4 |
| MS.gene22669.t1 | AT1G51200 | 34.000 | 150 | 71 | 3 | 62 | 183 | 15 | 164 | 8.00e-20 | 82.4 |
| MS.gene22669.t1 | AT1G51200 | 34.000 | 150 | 71 | 3 | 62 | 183 | 15 | 164 | 8.00e-20 | 82.4 |
Find 46 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGCATGTATGTTCTTC+TGG | 0.205127 | 7.2:-2358164 | None:intergenic |
| GCCAATGGTTGTGGTTTCTA+TGG | 0.283691 | 7.2:+2357882 | MS.gene22669:CDS |
| CTTTGCATGTATGTTCTTCT+GGG | 0.309729 | 7.2:-2358163 | None:intergenic |
| AAGCCGATGACTCAAGAATA+AGG | 0.356929 | 7.2:-2357962 | None:intergenic |
| GAACAAAGGTTCTTGTTTGA+AGG | 0.378685 | 7.2:-2357909 | None:intergenic |
| GAAACAAAATCCTTTGTGTA+TGG | 0.383600 | 7.2:+2358220 | MS.gene22669:CDS |
| GACGGAGAAGGAGAGGGGTT+TGG | 0.390926 | 7.2:+2357325 | MS.gene22669:CDS |
| AAAGTGGATTTAAAAGAGAT+TGG | 0.430845 | 7.2:+2358182 | MS.gene22669:CDS |
| AGTGAGGGTTATGGCTTTGA+CGG | 0.436346 | 7.2:+2357307 | None:intergenic |
| TCACAAATATCATTGATACT+AGG | 0.441086 | 7.2:-2358002 | None:intergenic |
| GTGCGTAGTTTAAGAGAGGA+AGG | 0.456139 | 7.2:+2357347 | MS.gene22669:CDS |
| TCACTTTGTGCCAATGGTTG+TGG | 0.466305 | 7.2:+2357873 | MS.gene22669:CDS |
| AAACCTTATTCTTGAGTCAT+CGG | 0.472750 | 7.2:+2357959 | MS.gene22669:CDS |
| TTGATACTAGGGTTCTTTGA+AGG | 0.481391 | 7.2:-2357990 | None:intergenic |
| AACAAAATCCTTTGTGTATG+GGG | 0.487990 | 7.2:+2358222 | MS.gene22669:CDS |
| AAACAAAATCCTTTGTGTAT+GGG | 0.488764 | 7.2:+2358221 | MS.gene22669:CDS |
| CACAAATATCATTGATACTA+GGG | 0.493722 | 7.2:-2358001 | None:intergenic |
| GGTTATGGCTTTGACGGAGA+AGG | 0.516948 | 7.2:+2357313 | None:intergenic |
| GTTCCGTCACTTTGTGCCAA+TGG | 0.523599 | 7.2:+2357867 | MS.gene22669:CDS |
| TAAGAGAGGAAGGGGTGCGT+AGG | 0.523850 | 7.2:+2357357 | MS.gene22669:CDS |
| GGCTTTGACGGAGAAGGAGA+GGG | 0.532470 | 7.2:+2357319 | MS.gene22669:CDS |
| TGCGTAGTTTAAGAGAGGAA+GGG | 0.537577 | 7.2:+2357348 | MS.gene22669:CDS |
| CATTGTAACACTTTGAACAA+AGG | 0.545148 | 7.2:-2357923 | None:intergenic |
| AGGAGAAGAAAACTAGGTGC+AGG | 0.548806 | 7.2:+2358066 | MS.gene22669:CDS |
| TGGTGGTGATGAGAGGGATA+AGG | 0.549250 | 7.2:+2357421 | MS.gene22669:CDS |
| ACCATAGAAACCACAACCAT+TGG | 0.550076 | 7.2:-2357883 | None:intergenic |
| TTTGGTGCGTAGTTTAAGAG+AGG | 0.557983 | 7.2:+2357343 | MS.gene22669:CDS |
| AGAGTGATGGTGGTGATGAG+AGG | 0.569060 | 7.2:+2357414 | MS.gene22669:CDS |
| GCGTAGTTTAAGAGAGGAAG+GGG | 0.569207 | 7.2:+2357349 | MS.gene22669:CDS |
| GAGTGATGGTGGTGATGAGA+GGG | 0.569582 | 7.2:+2357415 | MS.gene22669:CDS |
| ACATGAAGGAGAAGAAAACT+AGG | 0.590117 | 7.2:+2358060 | MS.gene22669:CDS |
| TGGCTTTGACGGAGAAGGAG+AGG | 0.597092 | 7.2:+2357318 | MS.gene22669:CDS |
| AATGAGGAAGAGAGTGATGG+TGG | 0.598981 | 7.2:+2357404 | MS.gene22669:CDS |
| TGTGGAGGCATTGAAGAATG+AGG | 0.609129 | 7.2:+2357388 | MS.gene22669:CDS |
| CATTGACAATGATAACATGA+AGG | 0.609470 | 7.2:+2358046 | MS.gene22669:CDS |
| ACAGGGTTCAAGTGCCGTTG+TGG | 0.610080 | 7.2:+2358113 | MS.gene22669:CDS |
| CAACCATTGGCACAAAGTGA+CGG | 0.611416 | 7.2:-2357870 | None:intergenic |
| AGAAGAACATACATGCAAAG+TGG | 0.612995 | 7.2:+2358166 | MS.gene22669:CDS |
| GGTGCGTAGGTTAAGACGTG+TGG | 0.614414 | 7.2:+2357370 | MS.gene22669:CDS |
| ACTAAGTGAAACAACATGCA+TGG | 0.623449 | 7.2:+2357845 | MS.gene22669:CDS |
| AAGAATGAGGAAGAGAGTGA+TGG | 0.624967 | 7.2:+2357401 | MS.gene22669:CDS |
| ATTGAATTGAAAATCAACAA+TGG | 0.628122 | 7.2:-2357447 | None:intergenic |
| GCTTTGACGGAGAAGGAGAG+GGG | 0.637010 | 7.2:+2357320 | MS.gene22669:CDS |
| GCGTAGGTTAAGACGTGTGG+AGG | 0.638442 | 7.2:+2357373 | MS.gene22669:CDS |
| ACAAAATCCTTTGTGTATGG+GGG | 0.652043 | 7.2:+2358223 | MS.gene22669:CDS |
| CACAAAATACATCACCACAA+CGG | 0.670499 | 7.2:-2358127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTGGTAAAAAAAAAAA+GGG | - | chr7.2:2357790-2357809 | None:intergenic | 10.0% |
| !! | TATATTTGGTAAAAAAAAAA+AGG | - | chr7.2:2357791-2357810 | None:intergenic | 10.0% |
| !!! | TATAATTTTCAATTGAATTT+TGG | + | chr7.2:2357642-2357661 | MS.gene22669:intron | 10.0% |
| !! | GAAATAGTTGTAATTATATT+TGG | - | chr7.2:2357805-2357824 | None:intergenic | 15.0% |
| !! | ATTGAATTGAAAATCAACAA+TGG | - | chr7.2:2357450-2357469 | None:intergenic | 20.0% |
| !! | TAAACAAAAAATATAACCTG+CGG | - | chr7.2:2357595-2357614 | None:intergenic | 20.0% |
| !!! | AAAAAGGGTATAGAATAATT+AGG | - | chr7.2:2357775-2357794 | None:intergenic | 20.0% |
| !!! | GATTTTGTTTCTCTAATATT+TGG | - | chr7.2:2358211-2358230 | None:intergenic | 20.0% |
| ! | AAACAAAATCCTTTGTGTAT+GGG | + | chr7.2:2358221-2358240 | MS.gene22669:CDS | 25.0% |
| ! | CACAAATATCATTGATACTA+GGG | - | chr7.2:2358004-2358023 | None:intergenic | 25.0% |
| ! | TCACAAATATCATTGATACT+AGG | - | chr7.2:2358005-2358024 | None:intergenic | 25.0% |
| !! | AAAGTGGATTTAAAAGAGAT+TGG | + | chr7.2:2358182-2358201 | MS.gene22669:CDS | 25.0% |
| AAACCTTATTCTTGAGTCAT+CGG | + | chr7.2:2357959-2357978 | MS.gene22669:CDS | 30.0% | |
| AACAAAATCCTTTGTGTATG+GGG | + | chr7.2:2358222-2358241 | MS.gene22669:CDS | 30.0% | |
| ACAAAAGAGATGAGATAGAT+AGG | - | chr7.2:2357521-2357540 | None:intergenic | 30.0% | |
| AGCATATATCGTTTAGAAGT+TGG | - | chr7.2:2357720-2357739 | None:intergenic | 30.0% | |
| CATTGACAATGATAACATGA+AGG | + | chr7.2:2358046-2358065 | MS.gene22669:CDS | 30.0% | |
| CATTGTAACACTTTGAACAA+AGG | - | chr7.2:2357926-2357945 | None:intergenic | 30.0% | |
| GAAACAAAATCCTTTGTGTA+TGG | + | chr7.2:2358220-2358239 | MS.gene22669:CDS | 30.0% | |
| GATTCATTCACATTCATATG+CGG | + | chr7.2:2357740-2357759 | MS.gene22669:intron | 30.0% | |
| ! | GATTATAGAACTGAAGTGTT+GGG | - | chr7.2:2357499-2357518 | None:intergenic | 30.0% |
| AAAAAATATAACCTGCGGTG+TGG | - | chr7.2:2357590-2357609 | None:intergenic | 35.0% | |
| AACAAAAAAGTGGGACTAAC+AGG | + | chr7.2:2358095-2358114 | MS.gene22669:CDS | 35.0% | |
| ACAAAAAAGTGGGACTAACA+GGG | + | chr7.2:2358096-2358115 | MS.gene22669:CDS | 35.0% | |
| ACAAAATCCTTTGTGTATGG+GGG | + | chr7.2:2358223-2358242 | MS.gene22669:CDS | 35.0% | |
| ACAATCCAACTTTGCTGAAA+AGG | - | chr7.2:2357674-2357693 | None:intergenic | 35.0% | |
| ACATGAAGGAGAAGAAAACT+AGG | + | chr7.2:2358060-2358079 | MS.gene22669:CDS | 35.0% | |
| ACTAAGTGAAACAACATGCA+TGG | + | chr7.2:2357845-2357864 | MS.gene22669:CDS | 35.0% | |
| ACTTTGCATGTATGTTCTTC+TGG | - | chr7.2:2358167-2358186 | None:intergenic | 35.0% | |
| AGAAGAACATACATGCAAAG+TGG | + | chr7.2:2358166-2358185 | MS.gene22669:CDS | 35.0% | |
| AGGAGTTGCAACAAAAAAGT+GGG | + | chr7.2:2358086-2358105 | MS.gene22669:CDS | 35.0% | |
| CACAAAATACATCACCACAA+CGG | - | chr7.2:2358130-2358149 | None:intergenic | 35.0% | |
| CTTTGCATGTATGTTCTTCT+GGG | - | chr7.2:2358166-2358185 | None:intergenic | 35.0% | |
| GGATTATAGAACTGAAGTGT+TGG | - | chr7.2:2357500-2357519 | None:intergenic | 35.0% | |
| TCAGCAAAGTTGGATTGTAT+TGG | + | chr7.2:2357676-2357695 | MS.gene22669:intron | 35.0% | |
| TTGATACTAGGGTTCTTTGA+AGG | - | chr7.2:2357993-2358012 | None:intergenic | 35.0% | |
| ! | ATCGTTTAGAAGTTGGTTGT+TGG | - | chr7.2:2357713-2357732 | None:intergenic | 35.0% |
| ! | GAACAAAGGTTCTTGTTTGA+AGG | - | chr7.2:2357912-2357931 | None:intergenic | 35.0% |
| ! | GTTTTCCTTTTCAGCAAAGT+TGG | + | chr7.2:2357666-2357685 | MS.gene22669:intron | 35.0% |
| !! | CTCATCTCTTTTGTTGTGTT+TGG | + | chr7.2:2357527-2357546 | MS.gene22669:intron | 35.0% |
| !! | TCTCTTTTGTTGTGTTTGGT+TGG | + | chr7.2:2357531-2357550 | MS.gene22669:intron | 35.0% |
| AAGAATGAGGAAGAGAGTGA+TGG | + | chr7.2:2357401-2357420 | MS.gene22669:CDS | 40.0% | |
| AAGCCGATGACTCAAGAATA+AGG | - | chr7.2:2357965-2357984 | None:intergenic | 40.0% | |
| ACCATAGAAACCACAACCAT+TGG | - | chr7.2:2357886-2357905 | None:intergenic | 40.0% | |
| CAGGAGTTGCAACAAAAAAG+TGG | + | chr7.2:2358085-2358104 | MS.gene22669:CDS | 40.0% | |
| TGCGTAGTTTAAGAGAGGAA+GGG | + | chr7.2:2357348-2357367 | MS.gene22669:CDS | 40.0% | |
| ! | TTTGGTGCGTAGTTTAAGAG+AGG | + | chr7.2:2357343-2357362 | MS.gene22669:CDS | 40.0% |
| !! | CGTTGTGGTGATGTATTTTG+TGG | + | chr7.2:2358128-2358147 | MS.gene22669:CDS | 40.0% |
| AATGAGGAAGAGAGTGATGG+TGG | + | chr7.2:2357404-2357423 | MS.gene22669:CDS | 45.0% | |
| AGGAGAAGAAAACTAGGTGC+AGG | + | chr7.2:2358066-2358085 | MS.gene22669:CDS | 45.0% | |
| ATATAACCTGCGGTGTGGTT+TGG | - | chr7.2:2357585-2357604 | None:intergenic | 45.0% | |
| CAACCATTGGCACAAAGTGA+CGG | - | chr7.2:2357873-2357892 | None:intergenic | 45.0% | |
| CTTATCACCCCCATACACAA+AGG | - | chr7.2:2358233-2358252 | None:intergenic | 45.0% | |
| GCCAATGGTTGTGGTTTCTA+TGG | + | chr7.2:2357882-2357901 | MS.gene22669:CDS | 45.0% | |
| GCGTAGTTTAAGAGAGGAAG+GGG | + | chr7.2:2357349-2357368 | MS.gene22669:CDS | 45.0% | |
| GTGCGTAGTTTAAGAGAGGA+AGG | + | chr7.2:2357347-2357366 | MS.gene22669:CDS | 45.0% | |
| TCACTTTGTGCCAATGGTTG+TGG | + | chr7.2:2357873-2357892 | MS.gene22669:CDS | 45.0% | |
| !! | TGTGGAGGCATTGAAGAATG+AGG | + | chr7.2:2357388-2357407 | MS.gene22669:CDS | 45.0% |
| ! | GTTCCGTCACTTTGTGCCAA+TGG | + | chr7.2:2357867-2357886 | MS.gene22669:CDS | 50.0% |
| ! | TGGTGGTGATGAGAGGGATA+AGG | + | chr7.2:2357421-2357440 | MS.gene22669:CDS | 50.0% |
| !! | AGAGTGATGGTGGTGATGAG+AGG | + | chr7.2:2357414-2357433 | MS.gene22669:CDS | 50.0% |
| !! | GAGTGATGGTGGTGATGAGA+GGG | + | chr7.2:2357415-2357434 | MS.gene22669:CDS | 50.0% |
| ACCAAACCAAACCACACCGC+AGG | + | chr7.2:2357576-2357595 | MS.gene22669:intron | 55.0% | |
| GCGTAGGTTAAGACGTGTGG+AGG | + | chr7.2:2357373-2357392 | MS.gene22669:CDS | 55.0% | |
| GCTTTGACGGAGAAGGAGAG+GGG | + | chr7.2:2357320-2357339 | MS.gene22669:CDS | 55.0% | |
| GGTGCGTAGGTTAAGACGTG+TGG | + | chr7.2:2357370-2357389 | MS.gene22669:CDS | 55.0% | |
| ! | ACAGGGTTCAAGTGCCGTTG+TGG | + | chr7.2:2358113-2358132 | MS.gene22669:CDS | 55.0% |
| ! | GGCTTTGACGGAGAAGGAGA+GGG | + | chr7.2:2357319-2357338 | MS.gene22669:CDS | 55.0% |
| ! | TAAGAGAGGAAGGGGTGCGT+AGG | + | chr7.2:2357357-2357376 | MS.gene22669:CDS | 55.0% |
| !! | ACCTGCGGTGTGGTTTGGTT+TGG | - | chr7.2:2357580-2357599 | None:intergenic | 55.0% |
| !! | TGGCTTTGACGGAGAAGGAG+AGG | + | chr7.2:2357318-2357337 | MS.gene22669:CDS | 55.0% |
| GACGGAGAAGGAGAGGGGTT+TGG | + | chr7.2:2357325-2357344 | MS.gene22669:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 2357317 | 2358256 | 2357317 | ID=MS.gene22669 |
| chr7.2 | mRNA | 2357317 | 2358256 | 2357317 | ID=MS.gene22669.t1;Parent=MS.gene22669 |
| chr7.2 | exon | 2357317 | 2357469 | 2357317 | ID=MS.gene22669.t1.exon1;Parent=MS.gene22669.t1 |
| chr7.2 | CDS | 2357317 | 2357469 | 2357317 | ID=cds.MS.gene22669.t1;Parent=MS.gene22669.t1 |
| chr7.2 | exon | 2357840 | 2358256 | 2357840 | ID=MS.gene22669.t1.exon2;Parent=MS.gene22669.t1 |
| chr7.2 | CDS | 2357840 | 2358256 | 2357840 | ID=cds.MS.gene22669.t1;Parent=MS.gene22669.t1 |
| Gene Sequence |
| Protein sequence |
