AlfalfaGEDB | MS.gene22951

M. sativa cultivar XinJiangDaYe / MS.gene22951

KEGG: K01051
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030599 GO:0042545 GO:0045229 GO:0052689 GO:0071554 GO:0071555 GO:0071840
PFAM: PF01095.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22951.t1	XP_013450374.1	98	348	7	0	1	348	217	564	6.00E-198	699.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22951.t1	Q8RXK7	68.8	349	104	2	1	347	227	572	3.4e-141	502.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22951.t1	A0A072U3Z0	98.0	348	7	0	1	348	217	564	4.3e-198	699.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050381	MS.gene22951	0.806953	6.40E-50	-1.69E-46
MS.gene050720	MS.gene22951	0.805736	1.16E-49	-1.69E-46
MS.gene050883	MS.gene22951	0.805143	1.54E-49	-1.69E-46
MS.gene051138	MS.gene22951	0.802712	4.93E-49	-1.69E-46
MS.gene051946	MS.gene22951	0.801382	9.25E-49	-1.69E-46
MS.gene055124	MS.gene22951	0.802826	4.66E-49	-1.69E-46
MS.gene056313	MS.gene22951	0.810684	1.02E-50	-1.69E-46
MS.gene056680	MS.gene22951	0.816628	5.01E-52	-1.69E-46
MS.gene057291	MS.gene22951	0.804295	2.31E-49	-1.69E-46
MS.gene057293	MS.gene22951	0.801712	7.91E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22951.t1	MTR_7g108890	97.989	348	7	0	1	348	217	564	0.0	716
MS.gene22951.t1	MTR_1g054880	81.844	347	62	1	1	347	214	559	0.0	600
MS.gene22951.t1	MTR_1g088020	80.802	349	64	2	1	347	209	556	0.0	580
MS.gene22951.t1	MTR_1g088225	79.943	349	65	3	1	347	209	554	0.0	569
MS.gene22951.t1	MTR_7g108875	74.499	349	84	2	1	347	220	565	0.0	540
MS.gene22951.t1	MTR_7g108900	72.126	348	93	3	1	346	215	560	0.0	527
MS.gene22951.t1	MTR_0458s0030	83.019	265	45	0	83	347	51	315	3.52e-169	474
MS.gene22951.t1	MTR_1g088040	83.019	265	45	0	83	347	51	315	3.52e-169	474
MS.gene22951.t1	MTR_1g083520	65.569	334	111	2	16	346	196	528	8.36e-160	458
MS.gene22951.t1	MTR_8g042910	63.253	332	122	0	15	346	281	612	1.76e-153	445

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22951.t1	AT4G02330	68.768	349	104	2	1	347	227	572	4.97e-179	508
MS.gene22951.t1	AT2G47550	67.723	347	109	1	1	347	216	559	7.13e-174	495
MS.gene22951.t1	AT1G02810	66.097	351	115	1	1	347	228	578	2.00e-173	494
MS.gene22951.t1	AT3G10720	60.479	334	132	0	14	347	283	616	9.57e-150	436
MS.gene22951.t1	AT5G04970	58.084	334	140	0	14	347	288	621	1.29e-139	410
MS.gene22951.t1	AT2G45220	59.091	330	121	6	18	346	195	511	5.95e-133	389
MS.gene22951.t1	AT3G10720	63.077	260	96	0	88	347	1	260	2.27e-126	363
MS.gene22951.t1	AT1G11580	55.828	326	140	2	18	342	231	553	2.44e-126	374
MS.gene22951.t1	AT3G43270	55.589	331	140	4	18	347	202	526	6.08e-126	372
MS.gene22951.t1	AT1G11580	55.828	326	140	2	18	342	252	574	6.23e-126	373

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Find 62 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAAGTACTTGATGA+TGG	0.536365	7.3:+6009606	MS.gene22951:CDS
AAACATACCTTGGTAGGCCA+TGG	0.560177	7.3:+6011342	MS.gene22951:CDS
AAACGTTGCACCAAATAACA+CGG	0.679707	7.3:+6009513	MS.gene22951:CDS
AACAATTGATGAAAGTGTTA+CGG	0.454527	7.3:+6009426	MS.gene22951:CDS
AAGAAGTACTTGATGATGGT+TGG	0.510321	7.3:+6009610	MS.gene22951:CDS
AAGCAAACACCAAGCAGTCG+CGG	0.652116	7.3:+6011010	MS.gene22951:CDS
AAGTATGAAACACCAGTTTG+AGG	0.552647	7.3:-6011605	None:intergenic
AATAACACGGTTGCTAGTAG+TGG	0.598741	7.3:+6009526	MS.gene22951:CDS
ACAGATCCAAATCAAAACAC+AGG	0.659080	7.3:+6011254	MS.gene22951:CDS
ACGTTCAATTCAGCAACATT+TGG	0.449707	7.3:+6009691	MS.gene22951:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGCATGAACCGTATTATA+AGG	+	chr7.3:6010040-6010059	MS.gene22951:intron	30.0%
ATACCAAGAAATACACTTTG+AGG	-	chr7.3:6010850-6010869	None:intergenic	30.0%
ATACTAGTATGAGAGTGAAT+TGG	+	chr7.3:6011504-6011523	MS.gene22951:CDS	30.0%
ATTAATCGAACGATTATCAC+TGG	+	chr7.3:6009640-6009659	MS.gene22951:CDS	30.0%
ATTGTGATTGTTAACCAAGA+TGG	+	chr7.3:6009457-6009476	MS.gene22951:CDS	30.0%
GAGTATAATAATACAGGACT+TGG	+	chr7.3:6011476-6011495	MS.gene22951:CDS	30.0%
GGTGATCATAATGTTATTGA+TGG	+	chr7.3:6009661-6009680	MS.gene22951:CDS	30.0%
TAAAATTTCCACTTCCATCT+TGG	-	chr7.3:6009474-6009493	None:intergenic	30.0%
TAACATAACATTTCGCAACA+CGG	+	chr7.3:6010980-6010999	MS.gene22951:CDS	30.0%
TTTCATGCATGCTATAAGTA+AGG	-	chr7.3:6009943-6009962	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	6009361	6011646	6009361	ID=MS.gene22951
chr7.3	mRNA	6009361	6011646	6009361	ID=MS.gene22951.t1;Parent=MS.gene22951
chr7.3	exon	6009361	6009712	6009361	ID=MS.gene22951.t1.exon1;Parent=MS.gene22951.t1
chr7.3	CDS	6009361	6009712	6009361	ID=cds.MS.gene22951.t1;Parent=MS.gene22951.t1
chr7.3	exon	6010952	6011646	6010952	ID=MS.gene22951.t1.exon2;Parent=MS.gene22951.t1
chr7.3	CDS	6010952	6011646	6010952	ID=cds.MS.gene22951.t1;Parent=MS.gene22951.t1

Gene Sequence

>MS.gene22951

ATGTCAGATAAAGTACGTGCTATTTATGATTCAGCTAGAAATCGTCATGGGCGAAAGTTACTTCAAACAATTGATGAAAGTGTTACGGTAAGTGAAATTGTGATTGTTAACCAAGATGGAAGTGGAAATTTTACAACTATTAATGATGCTATAAACGTTGCACCAAATAACACGGTTGCTAGTAGTGGTTACTTTCTGATTTTTGTTACTGAGGGTGTGTATCAAGAGTATGTATCTATACCCAAAAACAAGAAGTACTTGATGATGGTTGGAGATGGGATTAATCGAACGATTATCACTGGTGATCATAATGTTATTGATGGTTCTACAACGTTCAATTCAGCAACATTTGGTAAGCAAAACATTTGTTAATTTAGTTATACTCAACTCAAGTCAAGTATACGATAATTGATTGATGTCATTAATATTACAAGCAACACGTATCCATGCGCATGAGTACGCTTAGAGTTAAACCAATCAAAAGCTAGCTAGCATCAAAAGTCACGTTGAGTTTTTTAAAAACTAGTATTATCTTGACTAATTGATTCTCATAACCACTTTACTTAAACATGAATTATTCCTTACTTATAGCATGCATGAAAATTAATTTATCACATGTATTTAGGATTATGTGGTTATTGACAAATAATAAAATATATGACCCTCCCTCAAAAAATAAAATGCATGAACCGTATTATAAGGAAAAAAAAATAGGTGTATTTTGTTGTCCTTATTATAAAAAAAAAAATAAAGTCATTTGAGAGTGCATTAATTGCTAAAAAAAAACTATATAATTCTATTAAATGCAAGATATATAATGCTAAAAACTTTTCCTGGAAAAAGAAATACTGAAAACTTATATAGTTAATATAAAATAGGGAAATGCTCTTTCTCACCGACTACAACATCATGACAACTAATGTGTAAGATTATTCAAACTTCACATCTACCCTCTCGTGTTTTCCGTTAAACAAGACTTTGAAAGTTTGACTACTCTTTTGAACGCTGGCACGTATTGTTTTGTCAATCACGTTCGAGACATAGAACAGTTGAATATAAATATTTAATGATAGAGATGTATATATATGAAATAACATTTCAAATATATAATATCAAATAAACATTTTTTTTATGGATCATCAAAACTTCTTAGTCTATGTTATTTTTGTAATTGTTGACCATGACCAGAGTGAGTATATTTTTAATAGTGCTTGTTTTAATACTATTTTATTGTGATTTTCTATTTAATTTGATCAAATTCAAGTATATATGATCATCTCTTGGTCGATATTTAGTAAGTTTTTTTTATAAGGGATATTTGGTAGTTCATGCATACAACTTTTTTTTATTGGTTTAACGTTTCTCTATGCTAGCCTAAATTCAATCACACTTAATCCATTCATAAGTCATTTTCTTTACTCCTTTATAAAATCACACTTAATCCATCTAGATTACTACCTTGCAAAATCATCCATCTAGATTACTACCTCAAAGTGTATTTCTTGGTATAATGTGTAGTTTGAATTTGTTGTATAAATTTTGTACATGTGTTTGAATAATCCTTTATGCTCACTTTATGATATACTTGCAGCTGTGGTTGCACAAGGGTTCTTAGCGGTTAACATAACATTTCGCAACACGGCTGGACCAAGCAAACACCAAGCAGTCGCGGTAAGAAACGGAGCTGATTTGTCCACCTTTTACAGCTGCAGCTTCGAAGGCTATCAAGATACTTTGTACACACATTCCATGAGACAATTTTATCGCGAATGCGACATCTATGGAACAGTTGACTTCATATTTGGAAATGCTGCAGTTGTTTTACAATCTTGCAACATATATCCCCGACTTCCCAGCAGTGGACAATTCAACGCTATAACCGCTCAAGGTCGAACAGATCCAAATCAAAACACAGGAACTTCTATACATAATGCAACTATAAAAGCTAGTGATGATTTGGCTCCGTTGATTGGTACAGTGAAAACATACCTTGGTAGGCCATGGAAGGAGTACTCAAGGACAGTTTATATGGAATGTTTTATGGACAGTTTGATAAATCCTTCTGGTTGGCGTGAATGGAGTGGGAATTTTGCATTAAGCACATTATATTATGCAGAGTATAATAATACAGGACTTGGTTCAGATACTAGTATGAGAGTGAATTGGATTGGTTATCATCTTATTAATGCTACTGATGCTGCTAATTTTACAGTGGATAACTTTTTGGATGGGGATAGTTGGTTGCCTCAAACTGGTGTTTCATACTTGAGTGGATTGATCATATAG

Protein sequence

>MS.gene22951.t1

MSDKVRAIYDSARNRHGRKLLQTIDESVTVSEIVIVNQDGSGNFTTINDAINVAPNNTVASSGYFLIFVTEGVYQEYVSIPKNKKYLMMVGDGINRTIITGDHNVIDGSTTFNSATFAVVAQGFLAVNITFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQSCNIYPRLPSSGQFNAITAQGRTDPNQNTGTSIHNATIKASDDLAPLIGTVKTYLGRPWKEYSRTVYMECFMDSLINPSGWREWSGNFALSTLYYAEYNNTGLGSDTSMRVNWIGYHLINATDAANFTVDNFLDGDSWLPQTGVSYLSGLII