AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24026

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24026.t1 MTR_1g069215 96.751 277 9 0 1 277 1 277 0.0 556
MS.gene24026.t1 MTR_3g073070 89.531 277 27 1 1 277 1 275 2.61e-172 477
MS.gene24026.t1 MTR_3g073070 86.692 263 33 1 1 263 1 261 1.22e-164 458
MS.gene24026.t1 MTR_2g005900 41.053 95 50 3 175 266 58 149 1.46e-12 65.9
MS.gene24026.t1 MTR_2g036690 47.761 67 33 1 200 266 103 167 2.50e-12 64.7
MS.gene24026.t1 MTR_2g036690 47.761 67 33 1 200 266 103 167 4.07e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24026.t1 AT3G20970 83.173 208 35 0 68 275 72 279 8.16e-130 370
MS.gene24026.t1 AT1G51390 78.995 219 42 2 50 268 53 267 1.14e-126 361
MS.gene24026.t1 AT3G20970 84.000 150 24 0 68 217 72 221 9.92e-92 271
MS.gene24026.t1 AT5G49940 46.269 67 34 1 200 266 97 161 5.46e-13 66.2
MS.gene24026.t1 AT4G25910 47.761 67 33 1 200 266 96 160 1.07e-12 66.6
MS.gene24026.t1 AT5G49940 46.269 67 34 1 200 266 97 161 1.11e-12 66.6

Find 64 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTTGCTGCTATTA+TGG 0.182790 1.3:+48520322 MS.gene24026:CDS
TGCGATGATCAAGGAACTTT+TGG 0.229879 1.3:+48520630 MS.gene24026:CDS
CTCCTTTGCCCGGTGGAAAA+TGG 0.230244 1.3:-48519990 None:intergenic
ATTATGGATTTCTACTCTTC+AGG 0.292022 1.3:+48520338 MS.gene24026:CDS
TTCATCGCGGAACGAGGATT+AGG 0.297871 1.3:-48520107 None:intergenic
CCATGACGCATCTTCCGATT+TGG 0.310465 1.3:-48520285 None:intergenic
CAGCAAAGATTTCAGGCTTA+AGG 0.326720 1.3:-48520313 None:intergenic
GTCTTTGGAAGCGGCAGCTT+GGG 0.330417 1.3:-48520381 None:intergenic
ATAATAGCAGCAAAGATTTC+AGG 0.354714 1.3:-48520320 None:intergenic
AACATAAGAGACTCTGGATT+TGG 0.370612 1.3:-48520041 None:intergenic
GATTTGGAGTGGACTGTGTT+TGG 0.376256 1.3:-48520025 None:intergenic
ATCGTGGATTGCTGTGTCTT+TGG 0.387795 1.3:-48520396 None:intergenic
TCATCGCGGAACGAGGATTA+GGG 0.388776 1.3:-48520106 None:intergenic
CAAAGGTGTGGAACAAGAAT+TGG 0.398435 1.3:+48521582 MS.gene24026:CDS
TTCAGAGTCACCGAAGAACT+TGG 0.410747 1.3:-48521091 None:intergenic
TCTTCGGTGACTCTGAAATC+AGG 0.425848 1.3:+48521097 MS.gene24026:CDS
TGTGATTAGTCTCTGATTTG+AGG 0.428418 1.3:-48519857 None:intergenic
GTGATTAGTCTCTGATTTGA+GGG 0.430671 1.3:-48519856 None:intergenic
TGTCTTTGGAAGCGGCAGCT+TGG 0.456320 1.3:-48520382 None:intergenic
GGTGGGGACATTGTGTATTG+TGG 0.468819 1.3:+48520685 MS.gene24026:CDS
TAGTGGCTGCCCAAGTTCTT+CGG 0.469327 1.3:+48521081 MS.gene24026:CDS
GGAACGAGGATTAGGGAAAT+CGG 0.495781 1.3:-48520099 None:intergenic
AGCAGCTTTAAGTGGACAAA+CGG 0.505572 1.3:+48521621 MS.gene24026:CDS
GAAGAAGAAGCAGCTTTAAG+TGG 0.530262 1.3:+48521613 MS.gene24026:CDS
TCGTATCCGACCAACTGTAC+AGG 0.532621 1.3:+48520657 MS.gene24026:CDS
CAAATCGGAAGATGCGTCAT+GGG 0.534660 1.3:+48520286 MS.gene24026:CDS
AGATGGAAATGGTGAGGCGG+AGG 0.537192 1.3:-48519967 None:intergenic
GGATGAAACATAAGAGACTC+TGG 0.539372 1.3:-48520047 None:intergenic
ACATCCATGACAGGTTTACC+AGG 0.541119 1.3:-48520068 None:intergenic
TGAAACAGTTGCGATGATCA+AGG 0.541980 1.3:+48520621 MS.gene24026:CDS
GATTGCTGTGTCTTTGGAAG+CGG 0.547638 1.3:-48520390 None:intergenic
CCAAATCGGAAGATGCGTCA+TGG 0.548834 1.3:+48520285 MS.gene24026:CDS
TTGCTGCATTTACAGGTCAA+AGG 0.551548 1.3:+48521565 MS.gene24026:intron
CGACCAACTGTACAGGATGA+TGG 0.562611 1.3:+48520664 MS.gene24026:CDS
GTGGAAAATGGAGATGGAAA+TGG 0.563081 1.3:-48519978 None:intergenic
AAACATACTCCTCCTTTGCC+CGG 0.564888 1.3:-48520000 None:intergenic
TCAGAGTCACCGAAGAACTT+GGG 0.566646 1.3:-48521090 None:intergenic
GCATTGCGGTTGTAGTTGCA+AGG 0.571191 1.3:-48519933 None:intergenic
GAGTCTCTTATGTTTCATCC+TGG 0.574002 1.3:+48520050 MS.gene24026:CDS
TGCCCGGTGGAAAATGGAGA+TGG 0.578393 1.3:-48519984 None:intergenic
CCACCATCATCCTGTACAGT+TGG 0.579401 1.3:-48520667 None:intergenic
AACTGTACAGGATGATGGTG+GGG 0.584854 1.3:+48520669 MS.gene24026:CDS
GGTAAACCTGTCATGGATGT+TGG 0.587174 1.3:+48520071 MS.gene24026:CDS
TCATCCTGGTAAACCTGTCA+TGG 0.592000 1.3:+48520064 MS.gene24026:CDS
GGAGAATTCATCGCGGAACG+AGG 0.593137 1.3:-48520113 None:intergenic
CAACTGTACAGGATGATGGT+GGG 0.594080 1.3:+48520668 MS.gene24026:CDS
ATCGTCAAACTCAAAATGCA+AGG 0.595778 1.3:+48521052 MS.gene24026:CDS
CCAACTGTACAGGATGATGG+TGG 0.609164 1.3:+48520667 MS.gene24026:CDS
GCGCTACCAACATCCATGAC+AGG 0.609183 1.3:-48520077 None:intergenic
CATCATCCTGTACAGTTGGT+CGG 0.612141 1.3:-48520663 None:intergenic
TTTGAAGGATGACGGTGGTG+AGG 0.624455 1.3:+48519784 None:intergenic
GCTTGGGAGTCTAGAAAGAG+TGG 0.628813 1.3:-48520365 None:intergenic
GCATTTACAGGTCAAAGGTG+TGG 0.632082 1.3:+48521570 MS.gene24026:intron
TGGAGATGGAAATGGTGAGG+CGG 0.634856 1.3:-48519970 None:intergenic
AAGAGACTCTGGATTTGGAG+TGG 0.639473 1.3:-48520036 None:intergenic
TAGTTGCAAGGTTGAAACGA+TGG 0.642224 1.3:-48519921 None:intergenic
AAAATGCAAGGAGCATGTAG+TGG 0.643660 1.3:+48521064 MS.gene24026:CDS
CATACTCCTCCTTTGCCCGG+TGG 0.656092 1.3:-48519997 None:intergenic
TTAGGAAAACGATTACGACT+AGG 0.664261 1.3:+48519822 MS.gene24026:CDS
AAATGGAGATGGAAATGGTG+AGG 0.665109 1.3:-48519973 None:intergenic
GGAACAAGAATTGGATGCTG+AGG 0.670849 1.3:+48521591 MS.gene24026:CDS
GCTGATGCATTATGTACCTG+AGG 0.715793 1.3:+48521132 MS.gene24026:CDS
AGCAAGAGGAGAATTCATCG+CGG 0.788482 1.3:-48520120 None:intergenic
TGAACTTTGAAGGATGACGG+TGG 0.812467 1.3:+48519779 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACTTAAATTTCATAAA+AGG + chr1.3:48520478-48520497 MS.gene24026:intron 10.0%
!!! TTTTATGAAATTTAAGTAAA+AGG - chr1.3:48520479-48520498 None:intergenic 10.0%
!! ATATAAAAAACAAGTAAAAG+AGG - chr1.3:48521007-48521026 None:intergenic 15.0%
!!! TAATTTTATTTCAAGGAATT+TGG + chr1.3:48520453-48520472 MS.gene24026:intron 15.0%
!!! TTATTTAAAGCAGTATTAAA+AGG + chr1.3:48521478-48521497 MS.gene24026:intron 15.0%
!! AAATAGAAAACCTAATTCAA+TGG - chr1.3:48521371-48521390 None:intergenic 20.0%
!! AGCATATCTTATAAGTTAAT+TGG - chr1.3:48521339-48521358 None:intergenic 20.0%
!! ATATAAATGGAAACAACAAA+TGG - chr1.3:48521194-48521213 None:intergenic 20.0%
!! GTTGAACAATTCATATAAAT+TGG - chr1.3:48521511-48521530 None:intergenic 20.0%
!! TAAAAAAACAATCAGAAAAC+AGG - chr1.3:48520213-48520232 None:intergenic 20.0%
!! TCAATCACCATAAATATAAA+TGG - chr1.3:48521207-48521226 None:intergenic 20.0%
!! TTTCTATTTATCTTACTTAC+AGG + chr1.3:48521382-48521401 MS.gene24026:intron 20.0%
!!! AAATCAATTTTTGCTATTGA+TGG + chr1.3:48520143-48520162 MS.gene24026:CDS 20.0%
!!! ATTGCTGTAATTTTATTTCA+AGG + chr1.3:48520446-48520465 MS.gene24026:intron 20.0%
!!! ATTGTTTTTTTAATTGTTGC+AGG + chr1.3:48520221-48520240 MS.gene24026:intron 20.0%
!!! GAACTTTATCTCATTATTTT+AGG + chr1.3:48520836-48520855 MS.gene24026:intron 20.0%
!!! GTTGTTTCCATTTATATTTA+TGG + chr1.3:48521197-48521216 MS.gene24026:intron 20.0%
! AATAAAAGAAATGAAAGGAG+TGG - chr1.3:48520186-48520205 None:intergenic 25.0%
! AGAGTATAGATTATTCATTG+AGG - chr1.3:48520766-48520785 None:intergenic 25.0%
! ATTTATCTTACTTACAGGAT+TGG + chr1.3:48521387-48521406 MS.gene24026:intron 25.0%
! GCACAAATAAAAGAAATGAA+AGG - chr1.3:48520191-48520210 None:intergenic 25.0%
!! GGAAATTTGCTCATTTAATT+TGG - chr1.3:48520937-48520956 None:intergenic 25.0%
!!! CATTCTTAAGTTGATTTTGA+GGG + chr1.3:48521288-48521307 MS.gene24026:intron 25.0%
AATCAACTTAAGAATGCCAT+AGG - chr1.3:48521284-48521303 None:intergenic 30.0%
AATGAGAAAAACTTACATCG+TGG - chr1.3:48520415-48520434 None:intergenic 30.0%
ACATTGAAACCCAAATAACA+AGG - chr1.3:48520730-48520749 None:intergenic 30.0%
ATAATAGCAGCAAAGATTTC+AGG - chr1.3:48520323-48520342 None:intergenic 30.0%
ATTATGGATTTCTACTCTTC+AGG + chr1.3:48520338-48520357 MS.gene24026:CDS 30.0%
ATTGAAACCCAAATAACAAG+GGG - chr1.3:48520728-48520747 None:intergenic 30.0%
CATTGAAACCCAAATAACAA+GGG - chr1.3:48520729-48520748 None:intergenic 30.0%
GCATATTACAAGGATAAACT+TGG + chr1.3:48521310-48521329 MS.gene24026:intron 30.0%
TACAAATGCTTCATTACAGA+AGG - chr1.3:48521256-48521275 None:intergenic 30.0%
TAGAAAACCTAATTCAATGG+AGG - chr1.3:48521368-48521387 None:intergenic 30.0%
TGAAATCTTTGCTGCTATTA+TGG + chr1.3:48520322-48520341 MS.gene24026:CDS 30.0%
TGTCAACAACAATATTGTCT+TGG - chr1.3:48520958-48520977 None:intergenic 30.0%
TTCAAGATCTCAAAACTGAA+TGG + chr1.3:48520567-48520586 MS.gene24026:intron 30.0%
! GCAAAAATTGATTTAGCAAG+AGG - chr1.3:48520137-48520156 None:intergenic 30.0%
! TTTTGTCACTGTTACCAAAT+CGG + chr1.3:48520271-48520290 MS.gene24026:CDS 30.0%
!! GTTTGTTTTCTCTAGAGATA+CGG + chr1.3:48521027-48521046 MS.gene24026:intron 30.0%
!! TAAGTTTCCCCTTGTTATTT+GGG + chr1.3:48520718-48520737 MS.gene24026:intron 30.0%
!! TTTGTTTTCTCTAGAGATAC+GGG + chr1.3:48521028-48521047 MS.gene24026:intron 30.0%
!!! ATTCAGTTTTGAGATCTTGA+AGG - chr1.3:48520568-48520587 None:intergenic 30.0%
!!! GCATTCTTAAGTTGATTTTG+AGG + chr1.3:48521287-48521306 MS.gene24026:intron 30.0%
AACATAAGAGACTCTGGATT+TGG - chr1.3:48520044-48520063 None:intergenic 35.0%
AAGCATTTGTACCTTTCCTA+TGG + chr1.3:48521265-48521284 MS.gene24026:intron 35.0%
ACTTAAGAATGCCATAGGAA+AGG - chr1.3:48521279-48521298 None:intergenic 35.0%
ATCGTCAAACTCAAAATGCA+AGG + chr1.3:48521052-48521071 MS.gene24026:CDS 35.0%
TACAGAAGGATGATAAGTTG+AGG - chr1.3:48521242-48521261 None:intergenic 35.0%
TAGTTGTCCTCCATTGAATT+AGG + chr1.3:48521358-48521377 MS.gene24026:intron 35.0%
TTAGGAAAACGATTACGACT+AGG + chr1.3:48519822-48519841 MS.gene24026:CDS 35.0%
! ACAAATTGTTTTCGCTGTCT+GGG + chr1.3:48519891-48519910 MS.gene24026:CDS 35.0%
! GTCGTAATCGTTTTCCTAAT+CGG - chr1.3:48519821-48519840 None:intergenic 35.0%
! TACAAATTGTTTTCGCTGTC+TGG + chr1.3:48519890-48519909 MS.gene24026:CDS 35.0%
!! AGGAAGAGAAAAAAGCATTG+CGG - chr1.3:48519950-48519969 None:intergenic 35.0%
!! GATTTTGAGGGCATATTACA+AGG + chr1.3:48521300-48521319 MS.gene24026:intron 35.0%
!! GTAAGTTTCCCCTTGTTATT+TGG + chr1.3:48520717-48520736 MS.gene24026:intron 35.0%
!! GTGATTAGTCTCTGATTTGA+GGG - chr1.3:48519859-48519878 None:intergenic 35.0%
!! TAATGCAAACTTGTTACCTC+AGG - chr1.3:48521151-48521170 None:intergenic 35.0%
!! TGTGATTAGTCTCTGATTTG+AGG - chr1.3:48519860-48519879 None:intergenic 35.0%
!! TTGTTTTCTCTAGAGATACG+GGG + chr1.3:48521029-48521048 MS.gene24026:intron 35.0%
AAATGAAAGGAGTGGAGAGA+GGG - chr1.3:48520178-48520197 None:intergenic 40.0%
AAATGGAGATGGAAATGGTG+AGG - chr1.3:48519976-48519995 None:intergenic 40.0%
AGATAAAGTTCAACCCACCT+AGG - chr1.3:48520827-48520846 None:intergenic 40.0%
ATGCTTACCTGTTTGCATAC+AGG + chr1.3:48520591-48520610 MS.gene24026:intron 40.0%
CAGCAAAGATTTCAGGCTTA+AGG - chr1.3:48520316-48520335 None:intergenic 40.0%
GAATCATCCTGTATGCAAAC+AGG - chr1.3:48520601-48520620 None:intergenic 40.0%
GAGTCTCTTATGTTTCATCC+TGG + chr1.3:48520050-48520069 MS.gene24026:CDS 40.0%
GCAAAGGTAGAATGGAACTT+TGG - chr1.3:48520805-48520824 None:intergenic 40.0%
GGATGAAACATAAGAGACTC+TGG - chr1.3:48520050-48520069 None:intergenic 40.0%
GTAAATGCAGCAAGCAACAT+TGG - chr1.3:48521558-48521577 None:intergenic 40.0%
GTGGAAAATGGAGATGGAAA+TGG - chr1.3:48519981-48520000 None:intergenic 40.0%
TAGTTGCAAGGTTGAAACGA+TGG - chr1.3:48519924-48519943 None:intergenic 40.0%
TGAAACAGTTGCGATGATCA+AGG + chr1.3:48520621-48520640 MS.gene24026:CDS 40.0%
TTGCTGCATTTACAGGTCAA+AGG + chr1.3:48521565-48521584 MS.gene24026:intron 40.0%
! AAAATGCAAGGAGCATGTAG+TGG + chr1.3:48521064-48521083 MS.gene24026:CDS 40.0%
! ATGTTGCTTGCTGCATTTAC+AGG + chr1.3:48521558-48521577 MS.gene24026:intron 40.0%
! CAAAGGTGTGGAACAAGAAT+TGG + chr1.3:48521582-48521601 MS.gene24026:CDS 40.0%
! GGAATCACTCGTGTTTTCTT+TGG + chr1.3:48520242-48520261 MS.gene24026:intron 40.0%
! TGCGATGATCAAGGAACTTT+TGG + chr1.3:48520630-48520649 MS.gene24026:CDS 40.0%
! TTTCCATCTCCATTTTCCAC+CGG + chr1.3:48519981-48520000 MS.gene24026:CDS 40.0%
!! AGCAGCTTTAAGTGGACAAA+CGG + chr1.3:48521621-48521640 MS.gene24026:CDS 40.0%
!! GAAGAAGAAGCAGCTTTAAG+TGG + chr1.3:48521613-48521632 MS.gene24026:CDS 40.0%
AAACATACTCCTCCTTTGCC+CGG - chr1.3:48520003-48520022 None:intergenic 45.0%
AAGAGACTCTGGATTTGGAG+TGG - chr1.3:48520039-48520058 None:intergenic 45.0%
AATGAAAGGAGTGGAGAGAG+GGG - chr1.3:48520177-48520196 None:intergenic 45.0%
AATTCACGATCCAAGTGCTC+GGG + chr1.3:48520515-48520534 MS.gene24026:intron 45.0%
ACATCCATGACAGGTTTACC+AGG - chr1.3:48520071-48520090 None:intergenic 45.0%
AGCAAGAGGAGAATTCATCG+CGG - chr1.3:48520123-48520142 None:intergenic 45.0%
CAAATCGGAAGATGCGTCAT+GGG + chr1.3:48520286-48520305 MS.gene24026:CDS 45.0%
CAATTCACGATCCAAGTGCT+CGG + chr1.3:48520514-48520533 MS.gene24026:intron 45.0%
CATCATCCTGTACAGTTGGT+CGG - chr1.3:48520666-48520685 None:intergenic 45.0%
CATTCTACCTTTGCCTAGGT+GGG + chr1.3:48520811-48520830 MS.gene24026:intron 45.0%
GAAATGAAAGGAGTGGAGAG+AGG - chr1.3:48520179-48520198 None:intergenic 45.0%
GCATTTACAGGTCAAAGGTG+TGG + chr1.3:48521570-48521589 MS.gene24026:intron 45.0%
GCTGATGCATTATGTACCTG+AGG + chr1.3:48521132-48521151 MS.gene24026:CDS 45.0%
GGAACAAGAATTGGATGCTG+AGG + chr1.3:48521591-48521610 MS.gene24026:CDS 45.0%
GGAACGAGGATTAGGGAAAT+CGG - chr1.3:48520102-48520121 None:intergenic 45.0%
GGTAAACCTGTCATGGATGT+TGG + chr1.3:48520071-48520090 MS.gene24026:CDS 45.0%
GTTCCATTCTACCTTTGCCT+AGG + chr1.3:48520807-48520826 MS.gene24026:intron 45.0%
TCAGAGTCACCGAAGAACTT+GGG - chr1.3:48521093-48521112 None:intergenic 45.0%
TCATCCTGGTAAACCTGTCA+TGG + chr1.3:48520064-48520083 MS.gene24026:CDS 45.0%
TTCAGAGTCACCGAAGAACT+TGG - chr1.3:48521094-48521113 None:intergenic 45.0%
! AACTGTACAGGATGATGGTG+GGG + chr1.3:48520669-48520688 MS.gene24026:CDS 45.0%
! AGGCGTACTGTTTTCCGATT+AGG + chr1.3:48519804-48519823 MS.gene24026:CDS 45.0%
! ATCGTGGATTGCTGTGTCTT+TGG - chr1.3:48520399-48520418 None:intergenic 45.0%
! CAACTGTACAGGATGATGGT+GGG + chr1.3:48520668-48520687 MS.gene24026:CDS 45.0%
! CGGGAGTATGAGATTTGTCT+AGG + chr1.3:48520534-48520553 MS.gene24026:intron 45.0%
! GATTGCTGTGTCTTTGGAAG+CGG - chr1.3:48520393-48520412 None:intergenic 45.0%
! TTCCATCTCCATTTTCCACC+GGG + chr1.3:48519982-48520001 MS.gene24026:CDS 45.0%
!! GATTTGGAGTGGACTGTGTT+TGG - chr1.3:48520028-48520047 None:intergenic 45.0%
!! TCTTCGGTGACTCTGAAATC+AGG + chr1.3:48521097-48521116 MS.gene24026:CDS 45.0%
AGTTCAACCCACCTAGGCAA+AGG - chr1.3:48520821-48520840 None:intergenic 50.0%
ATCTCATACTCCCGAGCACT+TGG - chr1.3:48520528-48520547 None:intergenic 50.0%
ATGAAAGGAGTGGAGAGAGG+GGG - chr1.3:48520176-48520195 None:intergenic 50.0%
CCAAATCGGAAGATGCGTCA+TGG + chr1.3:48520285-48520304 MS.gene24026:CDS 50.0%
CCACCATCATCCTGTACAGT+TGG - chr1.3:48520670-48520689 None:intergenic 50.0%
CCACCTAGGCAAAGGTAGAA+TGG - chr1.3:48520813-48520832 None:intergenic 50.0%
CCATGACGCATCTTCCGATT+TGG - chr1.3:48520288-48520307 None:intergenic 50.0%
CCATTCTACCTTTGCCTAGG+TGG + chr1.3:48520810-48520829 MS.gene24026:intron 50.0%
CGACCAACTGTACAGGATGA+TGG + chr1.3:48520664-48520683 MS.gene24026:CDS 50.0%
CGAGCACTTGGATCGTGAAT+TGG - chr1.3:48520516-48520535 None:intergenic 50.0%
GCATTGCGGTTGTAGTTGCA+AGG - chr1.3:48519936-48519955 None:intergenic 50.0%
GCTTGGGAGTCTAGAAAGAG+TGG - chr1.3:48520368-48520387 None:intergenic 50.0%
GGTGGGGACATTGTGTATTG+TGG + chr1.3:48520685-48520704 MS.gene24026:CDS 50.0%
TAGTGGCTGCCCAAGTTCTT+CGG + chr1.3:48521081-48521100 MS.gene24026:CDS 50.0%
TCATCGCGGAACGAGGATTA+GGG - chr1.3:48520109-48520128 None:intergenic 50.0%
TCGTATCCGACCAACTGTAC+AGG + chr1.3:48520657-48520676 MS.gene24026:CDS 50.0%
TGGAGATGGAAATGGTGAGG+CGG - chr1.3:48519973-48519992 None:intergenic 50.0%
TTCATCGCGGAACGAGGATT+AGG - chr1.3:48520110-48520129 None:intergenic 50.0%
! CCAACTGTACAGGATGATGG+TGG + chr1.3:48520667-48520686 MS.gene24026:CDS 50.0%
AGATGGAAATGGTGAGGCGG+AGG - chr1.3:48519970-48519989 None:intergenic 55.0%
CTCCTTTGCCCGGTGGAAAA+TGG - chr1.3:48519993-48520012 None:intergenic 55.0%
GCGCTACCAACATCCATGAC+AGG - chr1.3:48520080-48520099 None:intergenic 55.0%
GGAGAATTCATCGCGGAACG+AGG - chr1.3:48520116-48520135 None:intergenic 55.0%
TGAAAGGAGTGGAGAGAGGG+GGG - chr1.3:48520175-48520194 None:intergenic 55.0%
TGCCCGGTGGAAAATGGAGA+TGG - chr1.3:48519987-48520006 None:intergenic 55.0%
! CATTTTCCACCGGGCAAAGG+AGG + chr1.3:48519991-48520010 MS.gene24026:CDS 55.0%
! CTCCATTTTCCACCGGGCAA+AGG + chr1.3:48519988-48520007 MS.gene24026:CDS 55.0%
! GTCTTTGGAAGCGGCAGCTT+GGG - chr1.3:48520384-48520403 None:intergenic 55.0%
! TGTCTTTGGAAGCGGCAGCT+TGG - chr1.3:48520385-48520404 None:intergenic 55.0%
CATACTCCTCCTTTGCCCGG+TGG - chr1.3:48520000-48520019 None:intergenic 60.0%
GAAAGGAGTGGAGAGAGGGG+GGG - chr1.3:48520174-48520193 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 48519792 48521648 48519792 ID=MS.gene24026
chr1.3 mRNA 48519792 48521648 48519792 ID=MS.gene24026.t1;Parent=MS.gene24026
chr1.3 exon 48519792 48520164 48519792 ID=MS.gene24026.t1.exon1;Parent=MS.gene24026.t1
chr1.3 CDS 48519792 48520164 48519792 ID=cds.MS.gene24026.t1;Parent=MS.gene24026.t1
chr1.3 exon 48520243 48520418 48520243 ID=MS.gene24026.t1.exon2;Parent=MS.gene24026.t1
chr1.3 CDS 48520243 48520418 48520243 ID=cds.MS.gene24026.t1;Parent=MS.gene24026.t1
chr1.3 exon 48520613 48520716 48520613 ID=MS.gene24026.t1.exon3;Parent=MS.gene24026.t1
chr1.3 CDS 48520613 48520716 48520613 ID=cds.MS.gene24026.t1;Parent=MS.gene24026.t1
chr1.3 exon 48521042 48521153 48521042 ID=MS.gene24026.t1.exon4;Parent=MS.gene24026.t1
chr1.3 CDS 48521042 48521153 48521042 ID=cds.MS.gene24026.t1;Parent=MS.gene24026.t1
chr1.3 exon 48521580 48521648 48521580 ID=MS.gene24026.t1.exon5;Parent=MS.gene24026.t1
chr1.3 CDS 48521580 48521648 48521580 ID=cds.MS.gene24026.t1;Parent=MS.gene24026.t1
Gene Sequence

>MS.gene24026

ATGACGGTGGTGAGGCGTACTGTTTTCCGATTAGGAAAACGATTACGACTAGGACTCTTCAATTCCCTCAAATCAGAGACTAATCACAATGATCTAAATACAAATTGTTTTCGCTGTCTGGGTGCAACGCCATCGTTTCAACCTTGCAACTACAACCGCAATGCTTTTTTCTCTTCCTCCGCCTCACCATTTCCATCTCCATTTTCCACCGGGCAAAGGAGGAGTATGTTTATCCAAACACAGTCCACTCCAAATCCAGAGTCTCTTATGTTTCATCCTGGTAAACCTGTCATGGATGTTGGTAGCGCCGATTTCCCTAATCCTCGTTCCGCGATGAATTCTCCTCTTGCTAAATCAATTTTTGCTATTGATGGTACTGCCCCCCCTCTCTCCACTCCTTTCATTTCTTTTATTTGTGCCTGTTTTCTGATTGTTTTTTTAATTGTTGCAGGAATCACTCGTGTTTTCTTTGGATCTGATTTTGTCACTGTTACCAAATCGGAAGATGCGTCATGGGAATTCCTTAAGCCTGAAATCTTTGCTGCTATTATGGATTTCTACTCTTCAGGTGAACCACTCTTTCTAGACTCCCAAGCTGCCGCTTCCAAAGACACAGCAATCCACGATGTAAGTTTTTCTCATTTCTATGCTGATATTGCTGTAATTTTATTTCAAGGAATTTGGCCTTTTACTTAAATTTCATAAAAGGTCAAATTTATTACCAATTCACGATCCAAGTGCTCGGGAGTATGAGATTTGTCTAGGTTTTGACACCTTCAAGATCTCAAAACTGAATGGTATGCTTACCTGTTTGCATACAGGATGATTCTGAAACAGTTGCGATGATCAAGGAACTTTTGGAGACTCGTATCCGACCAACTGTACAGGATGATGGTGGGGACATTGTGTATTGTGGTTTTGATTCGTAAGTTTCCCCTTGTTATTTGGGTTTCAATGTTACATGCACTTAACCTCAATGAATAATCTATACTCTTAACAAAATAGAAGTTCCAAAGTTCCATTCTACCTTTGCCTAGGTGGGTTGAACTTTATCTCATTATTTTAGGATCTCTGTGTTAAAAAATAATTGATGATATCTCATACAACAACATGCTAACAAATCATACTAAAAGTGAAATTAACCAAATTAAATGAGCAAATTTCCAAGACAATATTGTTGTTGACAATGCTAATGTTTGACATTATAGAATTCCTCTTTTACTTGTTTTTTATATGTTTGTTTTCTCTAGAGATACGGGGATCGTCAAACTCAAAATGCAAGGAGCATGTAGTGGCTGCCCAAGTTCTTCGGTGACTCTGAAATCAGGCATTGAGAATATGCTGATGCATTATGTACCTGAGGTAACAAGTTTGCATTATAATTTGTGATGAAACTGATCCATTTGTTGTTTCCATTTATATTTATGGTGATTGAATTGATTGAAATCCTCAACTTATCATCCTTCTGTAATGAAGCATTTGTACCTTTCCTATGGCATTCTTAAGTTGATTTTGAGGGCATATTACAAGGATAAACTTGGAGACCAATTAACTTATAAGATATGCTAGTTGTCCTCCATTGAATTAGGTTTTCTATTTATCTTACTTACAGGATTGGTTGCATGCAAGTTGTCGAATTTATGCATACTAGAAAGTATAGACAAAGCTGTATTGATTATTGAGTTTTTATTTAAAGCAGTATTAAAAGGCTGAGTTCCAATTTATATGAATTGTTCAACTATATAATATCGAGAAACAATCTTCCAATGTTGCTTGCTGCATTTACAGGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGAAGAAGAAGCAGCTTTAAGTGGACAAACGGAGTAG
Protein sequence

>MS.gene24026.t1

MTVVRRTVFRLGKRLRLGLFNSLKSETNHNDLNTNCFRCLGATPSFQPCNYNRNAFFSSSASPFPSPFSTGQRRSMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFAIDGITRVFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGEPLFLDSQAAASKDTAIHDDDSETVAMIKELLETRIRPTVQDDGGDIVYCGFDSDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDAEEEEAALSGQTE