Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24855.t1 | XP_024637181.1 | 97.8 | 320 | 7 | 0 | 1 | 320 | 165 | 484 | 3.40E-184 | 654.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24855.t1 | Q9M2U3 | 29.1 | 299 | 177 | 8 | 1 | 276 | 78 | 364 | 1.3e-30 | 135.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24855.t1 | A0A396IIE8 | 97.8 | 320 | 7 | 0 | 1 | 320 | 165 | 484 | 2.5e-184 | 654.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049160 | MS.gene24855 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene04998 | MS.gene24855 | 0.860475 | 2.01E-63 | -1.69E-46 |
| MS.gene051226 | MS.gene24855 | 0.877375 | 6.61E-69 | -1.69E-46 |
| MS.gene051837 | MS.gene24855 | 0.96072 | 7.07E-119 | -1.69E-46 |
| MS.gene053499 | MS.gene24855 | 0.823877 | 1.09E-53 | -1.69E-46 |
| MS.gene054617 | MS.gene24855 | 0.845668 | 3.52E-59 | -1.69E-46 |
| MS.gene057093 | MS.gene24855 | 0.823432 | 1.39E-53 | -1.69E-46 |
| MS.gene057422 | MS.gene24855 | 0.809913 | 1.50E-50 | -1.69E-46 |
| MS.gene057432 | MS.gene24855 | 0.866178 | 3.45E-65 | -1.69E-46 |
| MS.gene06061 | MS.gene24855 | 0.820699 | 5.97E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24855.t1 | AT5G12010 | 66.667 | 321 | 106 | 1 | 1 | 320 | 181 | 501 | 6.74e-164 | 466 |
| MS.gene24855.t1 | AT4G29780 | 65.723 | 318 | 108 | 1 | 1 | 317 | 219 | 536 | 1.68e-158 | 454 |
| MS.gene24855.t1 | AT3G55350 | 29.097 | 299 | 177 | 8 | 1 | 276 | 78 | 364 | 3.42e-36 | 135 |
| MS.gene24855.t1 | AT3G63270 | 29.371 | 286 | 174 | 8 | 2 | 267 | 72 | 349 | 1.18e-32 | 125 |
| MS.gene24855.t1 | AT3G19120 | 25.249 | 301 | 185 | 8 | 1 | 279 | 123 | 405 | 1.87e-23 | 100 |
Find 78 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGATGGATGGAATTT+TGG | 0.058357 | 8.2:-6862872 | MS.gene24855:CDS |
| TCTTGGGTTGTTGGAAATTC+TGG | 0.088510 | 8.2:-6862898 | MS.gene24855:CDS |
| CTCTTTGAAACCAGCCTTAA+AGG | 0.137684 | 8.2:+6863324 | None:intergenic |
| TTGCCACCGGTGATCCTTTA+AGG | 0.178844 | 8.2:-6863338 | MS.gene24855:CDS |
| TTGGACTTAGGTGCAATTAT+TGG | 0.242423 | 8.2:+6863117 | None:intergenic |
| GAGGAGTTGCCTGGTGTTCT+TGG | 0.249284 | 8.2:-6862706 | MS.gene24855:CDS |
| AAACAGCTGATTCAAGTTCT+TGG | 0.262964 | 8.2:+6863430 | None:intergenic |
| GTCAAATTCTGATGTGTATA+AGG | 0.284658 | 8.2:+6862847 | None:intergenic |
| CAGGGAATTTGAAAGATTCT+TGG | 0.293250 | 8.2:-6862915 | MS.gene24855:CDS |
| TTGCTAAGGGATGCAATTCC+CGG | 0.296879 | 8.2:-6863393 | MS.gene24855:CDS |
| CTTGGGTTGTTGGAAATTCT+GGG | 0.311033 | 8.2:-6862897 | MS.gene24855:CDS |
| TTATAATGATGATCAGGTTT+TGG | 0.315416 | 8.2:-6862968 | MS.gene24855:CDS |
| AGCGCGTGGCGGTTTGTATC+TGG | 0.334097 | 8.2:-6863365 | MS.gene24855:CDS |
| AAATTCTGGGTTCCCTTTGA+TGG | 0.337782 | 8.2:-6862884 | MS.gene24855:CDS |
| AACCGCCACGCGCTGCCGCC+CGG | 0.343618 | 8.2:+6863374 | None:intergenic |
| TGAATTCTTATTTCAATAAG+AGG | 0.366055 | 8.2:-6863092 | MS.gene24855:CDS |
| TTGAAAGATTCTTGGGTTGT+TGG | 0.375328 | 8.2:-6862907 | MS.gene24855:CDS |
| TACATTGAACCACCAACATT+TGG | 0.379629 | 8.2:+6863153 | None:intergenic |
| ACCGCCACGCGCTGCCGCCC+GGG | 0.388713 | 8.2:+6863375 | None:intergenic |
| GGTTTCAAAGAGGTTCGGTT+TGG | 0.398582 | 8.2:-6863313 | MS.gene24855:CDS |
| GCATACTCTGTTACTGTTCA+AGG | 0.400851 | 8.2:-6863045 | MS.gene24855:CDS |
| TGGTTCTTATAATGATGATC+AGG | 0.413194 | 8.2:-6862974 | MS.gene24855:CDS |
| AGGGAATTTGAAAGATTCTT+GGG | 0.414339 | 8.2:-6862914 | MS.gene24855:CDS |
| GTTTCAAAGAGGTTCGGTTT+GGG | 0.421074 | 8.2:-6863312 | MS.gene24855:CDS |
| CACCGGTGATCCTTTAAGGC+TGG | 0.435269 | 8.2:-6863334 | MS.gene24855:CDS |
| CAGCAAGCACCAAGAACACC+AGG | 0.435403 | 8.2:+6862697 | None:intergenic |
| AAGGTGTGGTTGATACTAAA+GGG | 0.444687 | 8.2:-6863026 | MS.gene24855:CDS |
| TAAGAATTCACATTGGACTT+AGG | 0.445097 | 8.2:+6863105 | None:intergenic |
| TTTGATTAAACAAGAGTTTG+AGG | 0.451818 | 8.2:-6863190 | MS.gene24855:CDS |
| TTATGCCAAAGTTTATTAGT+TGG | 0.453461 | 8.2:-6863233 | MS.gene24855:CDS |
| CAAGGTGTGGTTGATACTAA+AGG | 0.464115 | 8.2:-6863027 | MS.gene24855:CDS |
| TCCCGGGCGGCAGCGCGTGG+CGG | 0.468360 | 8.2:-6863376 | MS.gene24855:CDS |
| GAGGATAGAGGTGAAGATTG+AGG | 0.471283 | 8.2:-6862725 | MS.gene24855:CDS |
| TCAGGCCAACTAATAAACTT+TGG | 0.476597 | 8.2:+6863228 | None:intergenic |
| CTGTTGCTGCTGTTCAAGCT+AGG | 0.480095 | 8.2:-6862573 | MS.gene24855:CDS |
| TCTGGGTTCCCTTTGATGGA+TGG | 0.480100 | 8.2:-6862880 | MS.gene24855:CDS |
| AGGCTGGTTTCAAAGAGGTT+CGG | 0.481630 | 8.2:-6863318 | MS.gene24855:CDS |
| GGTGGTCTTGTTTGCAGAAG+AGG | 0.482578 | 8.2:-6862744 | MS.gene24855:CDS |
| TTGATTAAACAAGAGTTTGA+GGG | 0.485947 | 8.2:-6863189 | MS.gene24855:CDS |
| ACCAAAATTCCATCCATCAA+AGG | 0.513056 | 8.2:+6862871 | None:intergenic |
| GGATATTCAGAAGCTGTGTA+AGG | 0.523114 | 8.2:-6862791 | MS.gene24855:CDS |
| CTCTGTTACTGTTCAAGGTG+TGG | 0.523511 | 8.2:-6863040 | MS.gene24855:CDS |
| CCAAAATTCCATCCATCAAA+GGG | 0.523543 | 8.2:+6862872 | None:intergenic |
| TTGTTTGCAGAAGAGGATAG+AGG | 0.524424 | 8.2:-6862737 | MS.gene24855:CDS |
| TTTGGAATGCCAAATGTTGG+TGG | 0.527866 | 8.2:-6863162 | MS.gene24855:CDS |
| TGAAATGAGAAATGAGAAGA+TGG | 0.532464 | 8.2:-6862656 | MS.gene24855:CDS |
| TATATCCACCTGTCATAAGC+TGG | 0.547796 | 8.2:-6863289 | MS.gene24855:CDS |
| AAAAGTTCAAAATTCCATGC+AGG | 0.556616 | 8.2:+6862631 | None:intergenic |
| TGCTAAGGGATGCAATTCCC+GGG | 0.559385 | 8.2:-6863392 | MS.gene24855:CDS |
| CTCGAGAACCAGCTTATGAC+AGG | 0.564326 | 8.2:+6863281 | None:intergenic |
| AATTCCCGGGCGGCAGCGCG+TGG | 0.564819 | 8.2:-6863379 | MS.gene24855:CDS |
| ATGTATCAGAGAGCTATGAC+AGG | 0.567243 | 8.2:-6862934 | MS.gene24855:CDS |
| GATGAAATGGTTGCTGAGAA+TGG | 0.571501 | 8.2:-6862604 | MS.gene24855:CDS |
| CTTTAAGGCTGGTTTCAAAG+AGG | 0.577123 | 8.2:-6863323 | MS.gene24855:CDS |
| CTGTCATAAGCTGGTTCTCG+AGG | 0.578653 | 8.2:-6863280 | MS.gene24855:CDS |
| ATGAGAAGATGGATCCTGCA+TGG | 0.580887 | 8.2:-6862645 | MS.gene24855:CDS |
| TGATCATCATTATAAGAACC+AGG | 0.582500 | 8.2:+6862976 | None:intergenic |
| TGTTGCTGCTGTTCAAGCTA+GGG | 0.584860 | 8.2:-6862572 | MS.gene24855:CDS |
| GATGCGTTTGCAAAGGTGAA+AGG | 0.587098 | 8.2:-6862769 | MS.gene24855:CDS |
| ATACACATCAGAATTTGACT+TGG | 0.591529 | 8.2:-6862843 | MS.gene24855:CDS |
| AACCAGCCTTAAAGGATCAC+CGG | 0.593167 | 8.2:+6863332 | None:intergenic |
| TTATTGCATCGTGGTCGTGT+TGG | 0.605444 | 8.2:-6862532 | MS.gene24855:CDS |
| ATTGAAATAAGAATTCACAT+TGG | 0.606107 | 8.2:+6863098 | None:intergenic |
| GCACGCGTTTAATGAGAAAG+TGG | 0.606857 | 8.2:-6862815 | MS.gene24855:CDS |
| GTGAAGATTGAGGAGTTGCC+TGG | 0.615794 | 8.2:-6862715 | MS.gene24855:CDS |
| GCTCATGATTTATTGCATCG+TGG | 0.641202 | 8.2:-6862541 | MS.gene24855:CDS |
| TGCAATTATTGGAATATGTG+TGG | 0.641263 | 8.2:+6863128 | None:intergenic |
| TGTATCTGGAGACTTGCCAC+CGG | 0.646276 | 8.2:-6863351 | MS.gene24855:CDS |
| CGTTTGCAAAGGTGAAAGGA+AGG | 0.647177 | 8.2:-6862765 | MS.gene24855:CDS |
| TCAATAAGAGGCAGACTCAG+AGG | 0.654570 | 8.2:-6863080 | MS.gene24855:CDS |
| CGCGTTTAATGAGAAAGTGG+AGG | 0.659194 | 8.2:-6862812 | MS.gene24855:CDS |
| GAGAACCAGCTTATGACAGG+TGG | 0.660646 | 8.2:+6863284 | None:intergenic |
| GTGTAAGGATGCGTTTGCAA+AGG | 0.672985 | 8.2:-6862776 | MS.gene24855:CDS |
| GATCATCATTATAAGAACCA+GGG | 0.676277 | 8.2:+6862977 | None:intergenic |
| TTGCAAAGGTGAAAGGAAGG+TGG | 0.690826 | 8.2:-6862762 | MS.gene24855:CDS |
| CAGCCTTAAAGGATCACCGG+TGG | 0.709341 | 8.2:+6863335 | None:intergenic |
| TGTATCAGAGAGCTATGACA+GGG | 0.718997 | 8.2:-6862933 | MS.gene24855:CDS |
| TAAGGGATGCAATTCCCGGG+CGG | 0.733518 | 8.2:-6863389 | MS.gene24855:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATAAGAATTCACAT+TGG | + | chr8.2:6862883-6862902 | None:intergenic | 20.0% |
| !!! | AAATTCATCTTATTTTCATC+AGG | + | chr8.2:6862771-6862790 | None:intergenic | 20.0% |
| !!! | TGAATTCTTATTTCAATAAG+AGG | - | chr8.2:6862886-6862905 | MS.gene24855:CDS | 20.0% |
| ! | AAAGAAAAACACTTTGCTAA+GGG | - | chr8.2:6862572-6862591 | MS.gene24855:CDS | 25.0% |
| ! | TTATGCCAAAGTTTATTAGT+TGG | - | chr8.2:6862745-6862764 | MS.gene24855:CDS | 25.0% |
| ! | TTGATTAAACAAGAGTTTGA+GGG | - | chr8.2:6862789-6862808 | MS.gene24855:CDS | 25.0% |
| ! | TTTGATTAAACAAGAGTTTG+AGG | - | chr8.2:6862788-6862807 | MS.gene24855:CDS | 25.0% |
| !! | ATTTTCACTGATGTTTTTCT+TGG | - | chr8.2:6862975-6862994 | MS.gene24855:CDS | 25.0% |
| !! | TTATAATGATGATCAGGTTT+TGG | - | chr8.2:6863010-6863029 | MS.gene24855:CDS | 25.0% |
| !!! | TGAACTTTTTGATGATGAAA+TGG | - | chr8.2:6863361-6863380 | MS.gene24855:CDS | 25.0% |
| AAAAGTTCAAAATTCCATGC+AGG | + | chr8.2:6863350-6863369 | None:intergenic | 30.0% | |
| AGGGAATTTGAAAGATTCTT+GGG | - | chr8.2:6863064-6863083 | MS.gene24855:CDS | 30.0% | |
| ATACACATCAGAATTTGACT+TGG | - | chr8.2:6863135-6863154 | MS.gene24855:CDS | 30.0% | |
| CAAAGAAAAACACTTTGCTA+AGG | - | chr8.2:6862571-6862590 | MS.gene24855:CDS | 30.0% | |
| GATCATCATTATAAGAACCA+GGG | + | chr8.2:6863004-6863023 | None:intergenic | 30.0% | |
| GTCAAATTCTGATGTGTATA+AGG | + | chr8.2:6863134-6863153 | None:intergenic | 30.0% | |
| TAAGAATTCACATTGGACTT+AGG | + | chr8.2:6862876-6862895 | None:intergenic | 30.0% | |
| TGAAATGAGAAATGAGAAGA+TGG | - | chr8.2:6863322-6863341 | MS.gene24855:CDS | 30.0% | |
| TGATCATCATTATAAGAACC+AGG | + | chr8.2:6863005-6863024 | None:intergenic | 30.0% | |
| TGCAATTATTGGAATATGTG+TGG | + | chr8.2:6862853-6862872 | None:intergenic | 30.0% | |
| TGGTTCTTATAATGATGATC+AGG | - | chr8.2:6863004-6863023 | MS.gene24855:CDS | 30.0% | |
| ACCAAAATTCCATCCATCAA+AGG | + | chr8.2:6863110-6863129 | None:intergenic | 35.0% | |
| CAGGGAATTTGAAAGATTCT+TGG | - | chr8.2:6863063-6863082 | MS.gene24855:CDS | 35.0% | |
| CCAAAATTCCATCCATCAAA+GGG | + | chr8.2:6863109-6863128 | None:intergenic | 35.0% | |
| TACATTGAACCACCAACATT+TGG | + | chr8.2:6862828-6862847 | None:intergenic | 35.0% | |
| TCAGGCCAACTAATAAACTT+TGG | + | chr8.2:6862753-6862772 | None:intergenic | 35.0% | |
| TTGGACTTAGGTGCAATTAT+TGG | + | chr8.2:6862864-6862883 | None:intergenic | 35.0% | |
| ! | AAACAGCTGATTCAAGTTCT+TGG | + | chr8.2:6862551-6862570 | None:intergenic | 35.0% |
| ! | AAGGTGTGGTTGATACTAAA+GGG | - | chr8.2:6862952-6862971 | MS.gene24855:CDS | 35.0% |
| ! | TAACAGAGTATGCAGTTTTC+TGG | + | chr8.2:6862926-6862945 | None:intergenic | 35.0% |
| ! | TTGAAAGATTCTTGGGTTGT+TGG | - | chr8.2:6863071-6863090 | MS.gene24855:CDS | 35.0% |
| !!! | CTTTTTGGAATGCCAAATGT+TGG | - | chr8.2:6862813-6862832 | MS.gene24855:CDS | 35.0% |
| AAATTCTGGGTTCCCTTTGA+TGG | - | chr8.2:6863094-6863113 | MS.gene24855:CDS | 40.0% | |
| ATGTATCAGAGAGCTATGAC+AGG | - | chr8.2:6863044-6863063 | MS.gene24855:CDS | 40.0% | |
| GATGAAATGGTTGCTGAGAA+TGG | - | chr8.2:6863374-6863393 | MS.gene24855:CDS | 40.0% | |
| GCATACTCTGTTACTGTTCA+AGG | - | chr8.2:6862933-6862952 | MS.gene24855:CDS | 40.0% | |
| GCTCATGATTTATTGCATCG+TGG | - | chr8.2:6863437-6863456 | MS.gene24855:CDS | 40.0% | |
| GGATATTCAGAAGCTGTGTA+AGG | - | chr8.2:6863187-6863206 | MS.gene24855:CDS | 40.0% | |
| TATATCCACCTGTCATAAGC+TGG | - | chr8.2:6862689-6862708 | MS.gene24855:CDS | 40.0% | |
| TGTATCAGAGAGCTATGACA+GGG | - | chr8.2:6863045-6863064 | MS.gene24855:CDS | 40.0% | |
| TTGTTTGCAGAAGAGGATAG+AGG | - | chr8.2:6863241-6863260 | MS.gene24855:CDS | 40.0% | |
| ! | CAAGAGTTTGAGGGTCTTTT+TGG | - | chr8.2:6862798-6862817 | MS.gene24855:CDS | 40.0% |
| ! | CAAGGTGTGGTTGATACTAA+AGG | - | chr8.2:6862951-6862970 | MS.gene24855:CDS | 40.0% |
| ! | CTTGGGTTGTTGGAAATTCT+GGG | - | chr8.2:6863081-6863100 | MS.gene24855:CDS | 40.0% |
| ! | GATGTTTTTCTTGGTTACCC+TGG | - | chr8.2:6862984-6863003 | MS.gene24855:CDS | 40.0% |
| ! | GTTTCAAAGAGGTTCGGTTT+GGG | - | chr8.2:6862666-6862685 | MS.gene24855:CDS | 40.0% |
| ! | TCTTGGGTTGTTGGAAATTC+TGG | - | chr8.2:6863080-6863099 | MS.gene24855:CDS | 40.0% |
| ! | TTTGGAATGCCAAATGTTGG+TGG | - | chr8.2:6862816-6862835 | MS.gene24855:CDS | 40.0% |
| !! | CCCTTTGATGGATGGAATTT+TGG | - | chr8.2:6863106-6863125 | MS.gene24855:CDS | 40.0% |
| !! | CTCTTTGAAACCAGCCTTAA+AGG | + | chr8.2:6862657-6862676 | None:intergenic | 40.0% |
| !! | CTTTAAGGCTGGTTTCAAAG+AGG | - | chr8.2:6862655-6862674 | MS.gene24855:CDS | 40.0% |
| AACCAGCCTTAAAGGATCAC+CGG | + | chr8.2:6862649-6862668 | None:intergenic | 45.0% | |
| ATGAGAAGATGGATCCTGCA+TGG | - | chr8.2:6863333-6863352 | MS.gene24855:CDS | 45.0% | |
| CGCGTTTAATGAGAAAGTGG+AGG | - | chr8.2:6863166-6863185 | MS.gene24855:CDS | 45.0% | |
| CGTTTGCAAAGGTGAAAGGA+AGG | - | chr8.2:6863213-6863232 | MS.gene24855:CDS | 45.0% | |
| CTCTGTTACTGTTCAAGGTG+TGG | - | chr8.2:6862938-6862957 | MS.gene24855:CDS | 45.0% | |
| GAGGATAGAGGTGAAGATTG+AGG | - | chr8.2:6863253-6863272 | MS.gene24855:CDS | 45.0% | |
| GATGCGTTTGCAAAGGTGAA+AGG | - | chr8.2:6863209-6863228 | MS.gene24855:CDS | 45.0% | |
| GCACGCGTTTAATGAGAAAG+TGG | - | chr8.2:6863163-6863182 | MS.gene24855:CDS | 45.0% | |
| GTGTAAGGATGCGTTTGCAA+AGG | - | chr8.2:6863202-6863221 | MS.gene24855:CDS | 45.0% | |
| TCAATAAGAGGCAGACTCAG+AGG | - | chr8.2:6862898-6862917 | MS.gene24855:CDS | 45.0% | |
| TGTTGCTGCTGTTCAAGCTA+GGG | - | chr8.2:6863406-6863425 | MS.gene24855:CDS | 45.0% | |
| TTATTGCATCGTGGTCGTGT+TGG | - | chr8.2:6863446-6863465 | MS.gene24855:CDS | 45.0% | |
| TTGCAAAGGTGAAAGGAAGG+TGG | - | chr8.2:6863216-6863235 | MS.gene24855:CDS | 45.0% | |
| TTGCTAAGGGATGCAATTCC+CGG | - | chr8.2:6862585-6862604 | MS.gene24855:CDS | 45.0% | |
| ! | GGTTTCAAAGAGGTTCGGTT+TGG | - | chr8.2:6862665-6862684 | MS.gene24855:CDS | 45.0% |
| !! | AGGCTGGTTTCAAAGAGGTT+CGG | - | chr8.2:6862660-6862679 | MS.gene24855:CDS | 45.0% |
| CTCGAGAACCAGCTTATGAC+AGG | + | chr8.2:6862700-6862719 | None:intergenic | 50.0% | |
| CTGTTGCTGCTGTTCAAGCT+AGG | - | chr8.2:6863405-6863424 | MS.gene24855:CDS | 50.0% | |
| GAGAACCAGCTTATGACAGG+TGG | + | chr8.2:6862697-6862716 | None:intergenic | 50.0% | |
| GTGAAGATTGAGGAGTTGCC+TGG | - | chr8.2:6863263-6863282 | MS.gene24855:CDS | 50.0% | |
| TCTGGGTTCCCTTTGATGGA+TGG | - | chr8.2:6863098-6863117 | MS.gene24855:CDS | 50.0% | |
| TGCTAAGGGATGCAATTCCC+GGG | - | chr8.2:6862586-6862605 | MS.gene24855:CDS | 50.0% | |
| TGTATCTGGAGACTTGCCAC+CGG | - | chr8.2:6862627-6862646 | MS.gene24855:CDS | 50.0% | |
| TTGCCACCGGTGATCCTTTA+AGG | - | chr8.2:6862640-6862659 | MS.gene24855:CDS | 50.0% | |
| ! | CTGTCATAAGCTGGTTCTCG+AGG | - | chr8.2:6862698-6862717 | MS.gene24855:CDS | 50.0% |
| !! | GGTGGTCTTGTTTGCAGAAG+AGG | - | chr8.2:6863234-6863253 | MS.gene24855:CDS | 50.0% |
| CAGCAAGCACCAAGAACACC+AGG | + | chr8.2:6863284-6863303 | None:intergenic | 55.0% | |
| CAGCCTTAAAGGATCACCGG+TGG | + | chr8.2:6862646-6862665 | None:intergenic | 55.0% | |
| GAGGAGTTGCCTGGTGTTCT+TGG | - | chr8.2:6863272-6863291 | MS.gene24855:CDS | 55.0% | |
| TAAGGGATGCAATTCCCGGG+CGG | - | chr8.2:6862589-6862608 | MS.gene24855:CDS | 55.0% | |
| !! | CACCGGTGATCCTTTAAGGC+TGG | - | chr8.2:6862644-6862663 | MS.gene24855:CDS | 55.0% |
| AGCGCGTGGCGGTTTGTATC+TGG | - | chr8.2:6862613-6862632 | MS.gene24855:CDS | 60.0% | |
| AATTCCCGGGCGGCAGCGCG+TGG | - | chr8.2:6862599-6862618 | MS.gene24855:CDS | 75.0% | |
| ! | AACCGCCACGCGCTGCCGCC+CGG | + | chr8.2:6862607-6862626 | None:intergenic | 80.0% |
| ! | ACCGCCACGCGCTGCCGCCC+GGG | + | chr8.2:6862606-6862625 | None:intergenic | 85.0% |
| ! | TCCCGGGCGGCAGCGCGTGG+CGG | - | chr8.2:6862602-6862621 | MS.gene24855:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6862519 | 6863481 | 6862519 | ID=MS.gene24855 |
| chr8.2 | mRNA | 6862519 | 6863481 | 6862519 | ID=MS.gene24855.t1;Parent=MS.gene24855 |
| chr8.2 | exon | 6862519 | 6863481 | 6862519 | ID=MS.gene24855.t1.exon1;Parent=MS.gene24855.t1 |
| chr8.2 | CDS | 6862519 | 6863481 | 6862519 | ID=cds.MS.gene24855.t1;Parent=MS.gene24855.t1 |
| Gene Sequence |
| Protein sequence |
