Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25259.t1 | XP_024638594.1 | 96.9 | 193 | 6 | 0 | 1 | 193 | 1 | 193 | 3.00E-106 | 394.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25259.t1 | I3SK06 | 96.9 | 193 | 6 | 0 | 1 | 193 | 1 | 193 | 2.1e-106 | 394.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene25259 | -0.800991 | 1.11E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene25259 | 0.805184 | 1.51E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene25259 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene25259 | 0.801792 | 7.62E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene25259 | 0.828138 | 1.06E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene25259 | 0.835598 | 1.53E-56 | -1.69E-46 |
| MS.gene052947 | MS.gene25259 | 0.803197 | 3.91E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene25259 | 0.804352 | 2.25E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene25259 | 0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene059569 | MS.gene25259 | 0.808475 | 3.04E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene25259 | 0.808249 | 3.40E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene25259 | 0.807456 | 5.01E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene25259 | 0.804695 | 1.91E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene25259 | 0.816103 | 6.57E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25259.t1 | MTR_4g125360 | 99.301 | 143 | 1 | 0 | 51 | 193 | 17 | 159 | 2.52e-106 | 302 |
| MS.gene25259.t1 | MTR_4g125350 | 97.561 | 41 | 1 | 0 | 1 | 41 | 1 | 41 | 2.16e-19 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25259.t1 | AT2G06010 | 75.145 | 173 | 43 | 0 | 19 | 191 | 14 | 186 | 4.89e-100 | 287 |
Find 53 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCACAAATCTGGTAAT+TGG | 0.185966 | 8.2:+7327463 | None:intergenic |
| CAAATTCCGTAAAGAAATTC+AGG | 0.216585 | 8.2:-7330603 | MS.gene25259:CDS |
| ATTAACTTCCATTTCCATTC+AGG | 0.240291 | 8.2:+7327532 | None:intergenic |
| TATGTTCTTCCTGAGCTTAC+TGG | 0.240346 | 8.2:-7327096 | MS.gene25259:CDS |
| GAACACCCTGAATTTCTTTA+CGG | 0.280424 | 8.2:+7330597 | None:intergenic |
| TGTTCCCTGGCTTTGATTTA+CGG | 0.288244 | 8.2:-7327137 | MS.gene25259:CDS |
| CCTGGCTTTGATTTACGGTT+TGG | 0.321081 | 8.2:-7327132 | MS.gene25259:CDS |
| TGATGTCTTATTTCGGATTC+GGG | 0.323822 | 8.2:+7327167 | None:intergenic |
| CTGATGTCTTATTTCGGATT+CGG | 0.328049 | 8.2:+7327166 | None:intergenic |
| TACCAGATTTGTGAATCTTC+AGG | 0.338470 | 8.2:-7327458 | MS.gene25259:intron |
| AACCAACTGATGTCTTATTT+CGG | 0.342807 | 8.2:+7327160 | None:intergenic |
| ATGGAAGCTCACAACATGTT+TGG | 0.351755 | 8.2:-7327205 | MS.gene25259:CDS |
| GATTCACAAATCTGGTAATT+GGG | 0.402320 | 8.2:+7327464 | None:intergenic |
| ACATCAGTTGGTTTGTTCCC+TGG | 0.406528 | 8.2:-7327150 | MS.gene25259:CDS |
| AACTCATCCCACGAAGTTGC+AGG | 0.415261 | 8.2:+7330662 | None:intergenic |
| AACCTGAAGATTCACAAATC+TGG | 0.425915 | 8.2:+7327456 | None:intergenic |
| TGGAAGCTCACAACATGTTT+GGG | 0.429971 | 8.2:-7327204 | MS.gene25259:CDS |
| TGTTCGTGTTGCTCTCAATA+TGG | 0.435898 | 8.2:-7330579 | MS.gene25259:CDS |
| TTAAGCCTTTGACACCTGAA+TGG | 0.453863 | 8.2:-7327546 | MS.gene25259:CDS |
| AGCATCACTGTGGGTTATGA+TGG | 0.463441 | 8.2:+7326816 | None:intergenic |
| ATGTTCTTCCTGAGCTTACT+GGG | 0.464726 | 8.2:-7327095 | MS.gene25259:intron |
| CTTTGACACCTGAATGGAAA+TGG | 0.466534 | 8.2:-7327540 | MS.gene25259:CDS |
| TGCATGCTACTGGTTGGAAA+TGG | 0.469527 | 8.2:-7327224 | MS.gene25259:CDS |
| ATGCGAACATCATGCTGAAT+GGG | 0.476786 | 8.2:+7327502 | None:intergenic |
| CATTTCCATTCAGGTGTCAA+AGG | 0.477629 | 8.2:+7327541 | None:intergenic |
| TGATTTACGGTTTGGATGGA+GGG | 0.478111 | 8.2:-7327124 | MS.gene25259:CDS |
| TTGATTTACGGTTTGGATGG+AGG | 0.489760 | 8.2:-7327125 | MS.gene25259:CDS |
| AATGCGAACATCATGCTGAA+TGG | 0.493171 | 8.2:+7327501 | None:intergenic |
| CTCAAACTCAAACGTGGAAG+AGG | 0.496704 | 8.2:-7330687 | MS.gene25259:CDS |
| TTAAAATGCATGCTACTGGT+TGG | 0.498269 | 8.2:-7327230 | MS.gene25259:CDS |
| GCTTTGATTTACGGTTTGGA+TGG | 0.499334 | 8.2:-7327128 | MS.gene25259:CDS |
| ATCCGAAATAAGACATCAGT+TGG | 0.501556 | 8.2:-7327162 | MS.gene25259:CDS |
| TTTGCTTGACATTCATTGAT+CGG | 0.512301 | 8.2:+7327577 | None:intergenic |
| CCAAACCGTAAATCAAAGCC+AGG | 0.516524 | 8.2:+7327132 | None:intergenic |
| TTATACAGGGGTCTAGGTAC+TGG | 0.526602 | 8.2:-7326898 | MS.gene25259:intron |
| GAAACTTTATACAGGGGTCT+AGG | 0.530777 | 8.2:-7326904 | MS.gene25259:intron |
| CCAATGTTCAACATGCAGTC+GGG | 0.534326 | 8.2:-7326871 | MS.gene25259:CDS |
| AAAACTTGCCCAGTAAGCTC+AGG | 0.536633 | 8.2:+7327087 | None:intergenic |
| AAGAGGAACCTGCAACTTCG+TGG | 0.540479 | 8.2:-7330670 | MS.gene25259:CDS |
| CCCGACTGCATGTTGAACAT+TGG | 0.565320 | 8.2:+7326871 | None:intergenic |
| GCCAATGTTCAACATGCAGT+CGG | 0.583451 | 8.2:-7326872 | MS.gene25259:CDS |
| AAATTCCGTAAAGAAATTCA+GGG | 0.598934 | 8.2:-7330602 | MS.gene25259:CDS |
| AGAGGAACCTGCAACTTCGT+GGG | 0.608732 | 8.2:-7330669 | MS.gene25259:CDS |
| TGTTCAACATGCAGTCGGGA+CGG | 0.609157 | 8.2:-7326867 | MS.gene25259:CDS |
| AATTTGAGAAATAACTCAGA+AGG | 0.628478 | 8.2:+7330620 | None:intergenic |
| TAATCAGCACAGGTTGGTGT+AGG | 0.630811 | 8.2:-7327261 | MS.gene25259:intron |
| AGCATCACTTGATAGAGTTG+AGG | 0.633842 | 8.2:-7326839 | MS.gene25259:CDS |
| AAATCAATCAGCATCACTGT+GGG | 0.635664 | 8.2:+7326807 | None:intergenic |
| AAGCTCACAACATGTTTGGG+TGG | 0.660397 | 8.2:-7327201 | MS.gene25259:CDS |
| TCGTGTTGCTCTCAATATGG+AGG | 0.662474 | 8.2:-7330576 | MS.gene25259:intron |
| CAAATCAATCAGCATCACTG+TGG | 0.667430 | 8.2:+7326806 | None:intergenic |
| CAAACCGTAAATCAAAGCCA+GGG | 0.696746 | 8.2:+7327133 | None:intergenic |
| TTCGAACTCAAACTCAAACG+TGG | 0.704750 | 8.2:-7330693 | MS.gene25259:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAGAATTCTTAATTAAA+AGG | - | chr8.2:7329761-7329780 | MS.gene25259:intron | 15.0% |
| !! | AATTTAAGCATTTCTATATT+TGG | - | chr8.2:7329799-7329818 | MS.gene25259:intron | 15.0% |
| !! | TTTGGATATAAATCAATTAA+AGG | + | chr8.2:7328782-7328801 | None:intergenic | 15.0% |
| !!! | ATAAATTTTGTTACTTTTGA+TGG | - | chr8.2:7329351-7329370 | MS.gene25259:intron | 15.0% |
| !!! | TATTTTTAAACATTTTTGCA+AGG | + | chr8.2:7330120-7330139 | None:intergenic | 15.0% |
| !!! | TTTAATTGATTTATATCCAA+AGG | - | chr8.2:7328781-7328800 | MS.gene25259:intron | 15.0% |
| !! | AATGAAATAAACAACAGTTA+AGG | + | chr8.2:7329403-7329422 | None:intergenic | 20.0% |
| !! | ATGAAATAAACAACAGTTAA+GGG | + | chr8.2:7329402-7329421 | None:intergenic | 20.0% |
| !! | ATGTCATTGATCAAATTAAT+AGG | + | chr8.2:7327498-7327517 | None:intergenic | 20.0% |
| !! | TAATCTTAAAACGAAAACTA+AGG | + | chr8.2:7329309-7329328 | None:intergenic | 20.0% |
| !! | TTCCATTTATTCAAAAGAAT+TGG | + | chr8.2:7329017-7329036 | None:intergenic | 20.0% |
| !! | TTGTTAATGTTATGATAAGT+TGG | - | chr8.2:7330194-7330213 | MS.gene25259:intron | 20.0% |
| !! | TTTGCATGAATAAAATTATC+TGG | - | chr8.2:7328336-7328355 | MS.gene25259:intron | 20.0% |
| !!! | AAAGTCAAATTTTCAATCAA+TGG | - | chr8.2:7328104-7328123 | MS.gene25259:intron | 20.0% |
| !!! | AAGTCAAATTTTCAATCAAT+GGG | - | chr8.2:7328105-7328124 | MS.gene25259:intron | 20.0% |
| !!! | ACATAAACATCATATAGTTT+TGG | + | chr8.2:7328233-7328252 | None:intergenic | 20.0% |
| !!! | AGTACATAATTTTATACATG+AGG | + | chr8.2:7328311-7328330 | None:intergenic | 20.0% |
| !!! | AGTTCAAGAATTTTTTACTA+TGG | - | chr8.2:7327959-7327978 | MS.gene25259:intron | 20.0% |
| !!! | ATTGATTGAAAATTTGACTT+TGG | + | chr8.2:7328105-7328124 | None:intergenic | 20.0% |
| ! | AAAAGTGATTGTTCATTTGA+TGG | + | chr8.2:7328026-7328045 | None:intergenic | 25.0% |
| ! | AAACAATGCTATGTTCAATT+CGG | + | chr8.2:7327270-7327289 | None:intergenic | 25.0% |
| ! | AAATTCCGTAAAGAAATTCA+GGG | - | chr8.2:7326912-7326931 | MS.gene25259:intron | 25.0% |
| ! | AATTCTTCAACTTCCATAAA+AGG | + | chr8.2:7328602-7328621 | None:intergenic | 25.0% |
| ! | AATTTGAGAAATAACTCAGA+AGG | + | chr8.2:7326897-7326916 | None:intergenic | 25.0% |
| ! | ACTGATTGAAACTTTATACA+GGG | - | chr8.2:7330603-7330622 | MS.gene25259:CDS | 25.0% |
| ! | AGAAGATGATATTGCAATTA+GGG | + | chr8.2:7327574-7327593 | None:intergenic | 25.0% |
| ! | ATGATGATTACTACATATTC+AGG | - | chr8.2:7329881-7329900 | MS.gene25259:intron | 25.0% |
| ! | CTATTCTCAATAAAGAATCT+TGG | + | chr8.2:7327648-7327667 | None:intergenic | 25.0% |
| ! | TAACATTAACAATAACACAG+TGG | + | chr8.2:7330186-7330205 | None:intergenic | 25.0% |
| ! | TAATTGCTTCAAATGAAATG+TGG | + | chr8.2:7330224-7330243 | None:intergenic | 25.0% |
| ! | TCTTTGCAATAAACAGTTAA+GGG | - | chr8.2:7329436-7329455 | MS.gene25259:intron | 25.0% |
| ! | TTGTTTCATGTTTCCTTAAA+CGG | - | chr8.2:7327284-7327303 | MS.gene25259:intron | 25.0% |
| ! | TTTATTGCAAAGAGTGAAAT+AGG | + | chr8.2:7329429-7329448 | None:intergenic | 25.0% |
| !! | AAAATACCAGTGTTGTTAAA+CGG | + | chr8.2:7328965-7328984 | None:intergenic | 25.0% |
| !! | AAAATTGAGATGACCTTTTA+TGG | - | chr8.2:7328586-7328605 | MS.gene25259:intron | 25.0% |
| !! | ATAAACAGTTAAGGGTTTTA+TGG | - | chr8.2:7329444-7329463 | MS.gene25259:intron | 25.0% |
| !! | GGAACATTATTGATTAGTTA+GGG | - | chr8.2:7328927-7328946 | MS.gene25259:intron | 25.0% |
| !! | TCTTTCTTTCTTTTACAGAT+TGG | - | chr8.2:7328486-7328505 | MS.gene25259:intron | 25.0% |
| !! | TGGAACATTATTGATTAGTT+AGG | - | chr8.2:7328926-7328945 | MS.gene25259:intron | 25.0% |
| !!! | GAATTTTTTACTATGGCTTA+TGG | - | chr8.2:7327966-7327985 | MS.gene25259:intron | 25.0% |
| !!! | TTTTGAGTGAGTTTGTAAAT+GGG | + | chr8.2:7327155-7327174 | None:intergenic | 25.0% |
| !!! | TTTTTGAGTGAGTTTGTAAA+TGG | + | chr8.2:7327156-7327175 | None:intergenic | 25.0% |
| AAAAGACCGAATATAAAACG+TGG | + | chr8.2:7328463-7328482 | None:intergenic | 30.0% | |
| AAAGACCGAATATAAAACGT+GGG | + | chr8.2:7328462-7328481 | None:intergenic | 30.0% | |
| AACAACGTCTGTGTTAATTA+GGG | + | chr8.2:7327058-7327077 | None:intergenic | 30.0% | |
| AACAATAAAGACAGCTTACA+CGG | - | chr8.2:7329101-7329120 | MS.gene25259:intron | 30.0% | |
| AACAATGCTATGTTCAATTC+GGG | + | chr8.2:7327269-7327288 | None:intergenic | 30.0% | |
| AATAATGTTCCAAAATACCC+TGG | + | chr8.2:7328918-7328937 | None:intergenic | 30.0% | |
| ACAAAGTTGACAGTCAAAAA+GGG | - | chr8.2:7329583-7329602 | MS.gene25259:intron | 30.0% | |
| ACTATTGATATGATTCTGAG+AGG | - | chr8.2:7328074-7328093 | MS.gene25259:intron | 30.0% | |
| ACTTTCAAATCATAAGCTGA+AGG | + | chr8.2:7329203-7329222 | None:intergenic | 30.0% | |
| AGATTCACAAATCTGGTAAT+TGG | + | chr8.2:7330054-7330073 | None:intergenic | 30.0% | |
| AGTAATAGAGAAAAATTGCG+AGG | + | chr8.2:7326972-7326991 | None:intergenic | 30.0% | |
| ATACGTGTATACTCTGTTAT+TGG | - | chr8.2:7328557-7328576 | MS.gene25259:intron | 30.0% | |
| ATCCAAAGGAAAGAATGAAT+GGG | - | chr8.2:7328795-7328814 | MS.gene25259:intron | 30.0% | |
| ATGAGTTTAATCACATAGAC+AGG | + | chr8.2:7329716-7329735 | None:intergenic | 30.0% | |
| ATTAACTTCCATTTCCATTC+AGG | + | chr8.2:7329985-7330004 | None:intergenic | 30.0% | |
| ATTATGAACCAGTATCCATA+GGG | - | chr8.2:7329146-7329165 | MS.gene25259:intron | 30.0% | |
| CAAATTCCGTAAAGAAATTC+AGG | - | chr8.2:7326911-7326930 | MS.gene25259:intron | 30.0% | |
| CAGAAGATGATATTGCAATT+AGG | + | chr8.2:7327575-7327594 | None:intergenic | 30.0% | |
| CTCTTTGCAATAAACAGTTA+AGG | - | chr8.2:7329435-7329454 | MS.gene25259:intron | 30.0% | |
| CTGATTGAAACTTTATACAG+GGG | - | chr8.2:7330604-7330623 | MS.gene25259:CDS | 30.0% | |
| CTTAAAACGAAAACTAAGGA+GGG | + | chr8.2:7329305-7329324 | None:intergenic | 30.0% | |
| GAAGATTGTATGAGTTCATT+TGG | - | chr8.2:7327705-7327724 | MS.gene25259:intron | 30.0% | |
| GACTGATTGAAACTTTATAC+AGG | - | chr8.2:7330602-7330621 | MS.gene25259:CDS | 30.0% | |
| GATTAAACTCATCTGTTCTT+TGG | - | chr8.2:7329724-7329743 | MS.gene25259:intron | 30.0% | |
| GATTCACAAATCTGGTAATT+GGG | + | chr8.2:7330053-7330072 | None:intergenic | 30.0% | |
| GATTGGGGAATTTAATATGT+TGG | - | chr8.2:7328985-7329004 | MS.gene25259:intron | 30.0% | |
| TAACAACGTCTGTGTTAATT+AGG | + | chr8.2:7327059-7327078 | None:intergenic | 30.0% | |
| TACAAAATGTTGTCAAACAG+TGG | + | chr8.2:7328891-7328910 | None:intergenic | 30.0% | |
| TACAAAGTTGACAGTCAAAA+AGG | - | chr8.2:7329582-7329601 | MS.gene25259:intron | 30.0% | |
| TATCCAAAGGAAAGAATGAA+TGG | - | chr8.2:7328794-7328813 | MS.gene25259:intron | 30.0% | |
| TCAATTCTCGTACAAGTTAT+CGG | - | chr8.2:7328392-7328411 | MS.gene25259:intron | 30.0% | |
| TCTTAAAACGAAAACTAAGG+AGG | + | chr8.2:7329306-7329325 | None:intergenic | 30.0% | |
| TTGTTACGGTAAGAAAGATA+AGG | - | chr8.2:7328625-7328644 | MS.gene25259:intron | 30.0% | |
| TTTGCTTGACATTCATTGAT+CGG | + | chr8.2:7329940-7329959 | None:intergenic | 30.0% | |
| TTTGGATGTCTTCAGTTAAA+AGG | - | chr8.2:7329817-7329836 | MS.gene25259:intron | 30.0% | |
| ! | ACAACATTTTGTACTAACCA+GGG | - | chr8.2:7328898-7328917 | MS.gene25259:intron | 30.0% |
| ! | ATAACCCCACGTTTTATATT+CGG | - | chr8.2:7328454-7328473 | MS.gene25259:intron | 30.0% |
| ! | CTATTGATATGATTCTGAGA+GGG | - | chr8.2:7328075-7328094 | MS.gene25259:intron | 30.0% |
| ! | GGAATTTAATATGTTGGTAG+AGG | - | chr8.2:7328991-7329010 | MS.gene25259:intron | 30.0% |
| ! | GGCCAATTCTTTTGAATAAA+TGG | - | chr8.2:7329012-7329031 | MS.gene25259:intron | 30.0% |
| ! | GTTGAAGAATTGTGTTGTTA+CGG | - | chr8.2:7328611-7328630 | MS.gene25259:intron | 30.0% |
| ! | GTTTTCGTAATGTTATCGAA+AGG | - | chr8.2:7327460-7327479 | MS.gene25259:CDS | 30.0% |
| ! | TATTGATATGATTCTGAGAG+GGG | - | chr8.2:7328076-7328095 | MS.gene25259:intron | 30.0% |
| ! | TTTCTTCTTCTGTTGATAGA+TGG | - | chr8.2:7328677-7328696 | MS.gene25259:intron | 30.0% |
| !! | AACCAACTGATGTCTTATTT+CGG | + | chr8.2:7330357-7330376 | None:intergenic | 30.0% |
| !! | TATTTGTGACATTTTCGAGA+GGG | - | chr8.2:7327916-7327935 | MS.gene25259:intron | 30.0% |
| !! | TTATTTGTGACATTTTCGAG+AGG | - | chr8.2:7327915-7327934 | MS.gene25259:intron | 30.0% |
| !!! | AACAACACTGGTATTTTGAT+TGG | - | chr8.2:7328968-7328987 | MS.gene25259:intron | 30.0% |
| !!! | ACAACACTGGTATTTTGATT+GGG | - | chr8.2:7328969-7328988 | MS.gene25259:intron | 30.0% |
| !!! | AGTTTTAAAATGCATGCTAC+TGG | - | chr8.2:7330280-7330299 | MS.gene25259:intron | 30.0% |
| !!! | GATTTTTTGTTTGGTTCGAT+TGG | - | chr8.2:7327786-7327805 | MS.gene25259:intron | 30.0% |
| !!! | GTTATTTTTTCCTTACTCAC+TGG | - | chr8.2:7329064-7329083 | MS.gene25259:intron | 30.0% |
| AAAGTCGAGACTTCTTAATG+TGG | - | chr8.2:7329218-7329237 | MS.gene25259:intron | 35.0% | |
| AACCTGAAGATTCACAAATC+TGG | + | chr8.2:7330061-7330080 | None:intergenic | 35.0% | |
| AAGACCGAATATAAAACGTG+GGG | + | chr8.2:7328461-7328480 | None:intergenic | 35.0% | |
| AATCAATGGGAAACATGTGT+GGG | - | chr8.2:7328118-7328137 | MS.gene25259:intron | 35.0% | |
| ACACAGATAAACAGTAACAG+TGG | + | chr8.2:7329046-7329065 | None:intergenic | 35.0% | |
| ACGGTAAGAAAGATAAGGAA+GGG | - | chr8.2:7328630-7328649 | MS.gene25259:intron | 35.0% | |
| AGTGGCGTTATATTGTGTAT+CGG | + | chr8.2:7328873-7328892 | None:intergenic | 35.0% | |
| ATACTGTTCTAATCGCACTA+CGG | - | chr8.2:7329663-7329682 | MS.gene25259:intron | 35.0% | |
| ATCCGAAATAAGACATCAGT+TGG | - | chr8.2:7330352-7330371 | MS.gene25259:intron | 35.0% | |
| CTTAATGTGGTATTAGAGTC+TGG | - | chr8.2:7329231-7329250 | MS.gene25259:intron | 35.0% | |
| CTTTCATAGTTCATCATGCA+TGG | - | chr8.2:7329625-7329644 | MS.gene25259:intron | 35.0% | |
| GAACACCCTGAATTTCTTTA+CGG | + | chr8.2:7326920-7326939 | None:intergenic | 35.0% | |
| GAGAAATTTCGTTGTCCATT+AGG | + | chr8.2:7327626-7327645 | None:intergenic | 35.0% | |
| GATTATGAACCAGTATCCAT+AGG | - | chr8.2:7329145-7329164 | MS.gene25259:intron | 35.0% | |
| TACCAGATTTGTGAATCTTC+AGG | - | chr8.2:7330056-7330075 | MS.gene25259:intron | 35.0% | |
| TACGGTAAGAAAGATAAGGA+AGG | - | chr8.2:7328629-7328648 | MS.gene25259:intron | 35.0% | |
| TATTCTTCTGTTCCACCAAA+TGG | - | chr8.2:7327341-7327360 | MS.gene25259:intron | 35.0% | |
| TCCAAAGGAAAGAATGAATG+GGG | - | chr8.2:7328796-7328815 | MS.gene25259:intron | 35.0% | |
| TGTAAAGTTCTCTGTCCATT+TGG | + | chr8.2:7327359-7327378 | None:intergenic | 35.0% | |
| TTAAAATGCATGCTACTGGT+TGG | - | chr8.2:7330284-7330303 | MS.gene25259:intron | 35.0% | |
| TTGACAGTCAAAAAGGGATT+GGG | - | chr8.2:7329589-7329608 | MS.gene25259:intron | 35.0% | |
| TTGCAGATCACGTAAAATAG+TGG | - | chr8.2:7328835-7328854 | MS.gene25259:intron | 35.0% | |
| ! | GACAACATTTTGTACTAACC+AGG | - | chr8.2:7328897-7328916 | MS.gene25259:intron | 35.0% |
| ! | TGTTTCAGTGTTTTGTAGCA+TGG | - | chr8.2:7329258-7329277 | MS.gene25259:intron | 35.0% |
| !! | ACAGATTGGTGTTGTTAAGT+TGG | - | chr8.2:7328500-7328519 | MS.gene25259:intron | 35.0% |
| !! | CTGATGTCTTATTTCGGATT+CGG | + | chr8.2:7330351-7330370 | None:intergenic | 35.0% |
| !! | GAGACAAATCATCGATTCAA+CGG | + | chr8.2:7327523-7327542 | None:intergenic | 35.0% |
| !! | TGATGTCTTATTTCGGATTC+GGG | + | chr8.2:7330350-7330369 | None:intergenic | 35.0% |
| !! | TTGTACTAACCAGGGTATTT+TGG | - | chr8.2:7328906-7328925 | MS.gene25259:intron | 35.0% |
| !!! | CAACACTGGTATTTTGATTG+GGG | - | chr8.2:7328970-7328989 | MS.gene25259:intron | 35.0% |
| AAACCCCACTTAGTGGAATA+AGG | - | chr8.2:7329469-7329488 | MS.gene25259:intron | 40.0% | |
| AAAGACAGCTTACACGGATA+GGG | - | chr8.2:7329107-7329126 | MS.gene25259:intron | 40.0% | |
| AAAGTTCTCTGTCCATTTGG+TGG | + | chr8.2:7327356-7327375 | None:intergenic | 40.0% | |
| AACACTGACATAATCAGCAC+AGG | - | chr8.2:7330243-7330262 | MS.gene25259:intron | 40.0% | |
| AATAATGTCCTATCATCCGC+CGG | + | chr8.2:7327900-7327919 | None:intergenic | 40.0% | |
| AATGCGAACATCATGCTGAA+TGG | + | chr8.2:7330016-7330035 | None:intergenic | 40.0% | |
| AGCATCACTTGATAGAGTTG+AGG | - | chr8.2:7330675-7330694 | MS.gene25259:CDS | 40.0% | |
| AGTTGGATTCTTGCGAGAAA+CGG | - | chr8.2:7328517-7328536 | MS.gene25259:intron | 40.0% | |
| ATGCGAACATCATGCTGAAT+GGG | + | chr8.2:7330015-7330034 | None:intergenic | 40.0% | |
| ATGGAAGCTCACAACATGTT+TGG | - | chr8.2:7330309-7330328 | MS.gene25259:intron | 40.0% | |
| ATGTTCTTCCTGAGCTTACT+GGG | - | chr8.2:7330419-7330438 | MS.gene25259:intron | 40.0% | |
| CAAACCGTAAATCAAAGCCA+GGG | + | chr8.2:7330384-7330403 | None:intergenic | 40.0% | |
| CAATCAATGGGAAACATGTG+TGG | - | chr8.2:7328117-7328136 | MS.gene25259:intron | 40.0% | |
| CATTTCCATTCAGGTGTCAA+AGG | + | chr8.2:7329976-7329995 | None:intergenic | 40.0% | |
| CGAGAAACAGTGAAAGAAAG+TGG | + | chr8.2:7327315-7327334 | None:intergenic | 40.0% | |
| CGTGAGAAAGATTAGTGACA+AGG | + | chr8.2:7327386-7327405 | None:intergenic | 40.0% | |
| CTTTGACACCTGAATGGAAA+TGG | - | chr8.2:7329974-7329993 | MS.gene25259:intron | 40.0% | |
| GAAACTTTATACAGGGGTCT+AGG | - | chr8.2:7330610-7330629 | MS.gene25259:CDS | 40.0% | |
| GAAAGTGGAGAATCCGTTTA+AGG | + | chr8.2:7327300-7327319 | None:intergenic | 40.0% | |
| GAAGGCAGGAAATGAAGTAT+GGG | + | chr8.2:7329185-7329204 | None:intergenic | 40.0% | |
| GGTGATGTTGAGAAACTTAG+CGG | - | chr8.2:7327743-7327762 | MS.gene25259:intron | 40.0% | |
| GTTGACAGTCAAAAAGGGAT+TGG | - | chr8.2:7329588-7329607 | MS.gene25259:intron | 40.0% | |
| TAAAGACAGCTTACACGGAT+AGG | - | chr8.2:7329106-7329125 | MS.gene25259:intron | 40.0% | |
| TAGTGAAGAGTCACGACTAT+TGG | + | chr8.2:7327214-7327233 | None:intergenic | 40.0% | |
| TATGTTCTTCCTGAGCTTAC+TGG | - | chr8.2:7330418-7330437 | MS.gene25259:intron | 40.0% | |
| TCAAATCATAAGCTGAAGGC+AGG | + | chr8.2:7329199-7329218 | None:intergenic | 40.0% | |
| TCCCCATTCATTCTTTCCTT+TGG | + | chr8.2:7328800-7328819 | None:intergenic | 40.0% | |
| TGAAGGCAGGAAATGAAGTA+TGG | + | chr8.2:7329186-7329205 | None:intergenic | 40.0% | |
| TGGAAGCTCACAACATGTTT+GGG | - | chr8.2:7330310-7330329 | MS.gene25259:intron | 40.0% | |
| TTAAGCCTTTGACACCTGAA+TGG | - | chr8.2:7329968-7329987 | MS.gene25259:intron | 40.0% | |
| TTCGAACTCAAACTCAAACG+TGG | - | chr8.2:7326821-7326840 | MS.gene25259:CDS | 40.0% | |
| TTTACAGTCCCTATGGATAC+TGG | + | chr8.2:7329157-7329176 | None:intergenic | 40.0% | |
| ! | AAGTTATCGGTGTTTCGATG+GGG | - | chr8.2:7328405-7328424 | MS.gene25259:intron | 40.0% |
| ! | ACAAGTTATCGGTGTTTCGA+TGG | - | chr8.2:7328403-7328422 | MS.gene25259:intron | 40.0% |
| ! | ATACCAGTGTTGTTAAACGG+CGG | + | chr8.2:7328962-7328981 | None:intergenic | 40.0% |
| ! | ATCTGCTGTTTGGTTCGTTT+GGG | - | chr8.2:7327817-7327836 | MS.gene25259:intron | 40.0% |
| ! | ATTTGGTGACATCATGCAAC+AGG | - | chr8.2:7327722-7327741 | MS.gene25259:intron | 40.0% |
| ! | CAAGTTATCGGTGTTTCGAT+GGG | - | chr8.2:7328404-7328423 | MS.gene25259:intron | 40.0% |
| ! | GCTTTGATTTACGGTTTGGA+TGG | - | chr8.2:7330386-7330405 | MS.gene25259:intron | 40.0% |
| ! | TGATTTACGGTTTGGATGGA+GGG | - | chr8.2:7330390-7330409 | MS.gene25259:intron | 40.0% |
| ! | TGTTCGTGTTGCTCTCAATA+TGG | - | chr8.2:7326935-7326954 | MS.gene25259:intron | 40.0% |
| ! | TTGATTTACGGTTTGGATGG+AGG | - | chr8.2:7330389-7330408 | MS.gene25259:intron | 40.0% |
| !! | AAGCCTTATTCCACTAAGTG+GGG | + | chr8.2:7329475-7329494 | None:intergenic | 40.0% |
| !! | AGGGTATCGTGTTGAAGAAT+GGG | - | chr8.2:7327935-7327954 | MS.gene25259:intron | 40.0% |
| !! | GAAGCCTTATTCCACTAAGT+GGG | + | chr8.2:7329476-7329495 | None:intergenic | 40.0% |
| !! | TGGCTTTGGTTGGAAAAAGT+TGG | - | chr8.2:7327438-7327457 | MS.gene25259:intron | 40.0% |
| !! | TGTTCCCTGGCTTTGATTTA+CGG | - | chr8.2:7330377-7330396 | MS.gene25259:intron | 40.0% |
| !!! | GAGCACAGCGATTTTTTGTT+TGG | - | chr8.2:7327777-7327796 | MS.gene25259:intron | 40.0% |
| AAAACTTGCCCAGTAAGCTC+AGG | + | chr8.2:7330430-7330449 | None:intergenic | 45.0% | |
| AAACTTAGCGGAGAGAATGG+CGG | - | chr8.2:7327755-7327774 | MS.gene25259:intron | 45.0% | |
| AAGCTCACAACATGTTTGGG+TGG | - | chr8.2:7330313-7330332 | MS.gene25259:intron | 45.0% | |
| AATAGCGAGCAAGCGATTGA+AGG | - | chr8.2:7327663-7327682 | MS.gene25259:intron | 45.0% | |
| ACTGGTAGGGTTATGCTTTC+TGG | - | chr8.2:7328170-7328189 | MS.gene25259:intron | 45.0% | |
| AGCAACAACAATGGAGATGG+AGG | - | chr8.2:7327867-7327886 | MS.gene25259:intron | 45.0% | |
| ATAGCGAGCAAGCGATTGAA+GGG | - | chr8.2:7327664-7327683 | MS.gene25259:intron | 45.0% | |
| CAATATGCAGCCAGTGAGTA+AGG | + | chr8.2:7329077-7329096 | None:intergenic | 45.0% | |
| CAGAGCAACAACAATGGAGA+TGG | - | chr8.2:7327864-7327883 | MS.gene25259:intron | 45.0% | |
| CCAAACCGTAAATCAAAGCC+AGG | + | chr8.2:7330385-7330404 | None:intergenic | 45.0% | |
| CCAATGTTCAACATGCAGTC+GGG | - | chr8.2:7330643-7330662 | MS.gene25259:CDS | 45.0% | |
| CCACAACAGAGCAACAACAA+TGG | - | chr8.2:7327858-7327877 | MS.gene25259:intron | 45.0% | |
| CTACCAGTGTTTGCTCTCTT+CGG | + | chr8.2:7328158-7328177 | None:intergenic | 45.0% | |
| CTCAAACTCAAACGTGGAAG+AGG | - | chr8.2:7326827-7326846 | MS.gene25259:CDS | 45.0% | |
| CTGACATAATCAGCACAGGT+TGG | - | chr8.2:7330247-7330266 | MS.gene25259:intron | 45.0% | |
| GAAGAGAGCAAACACTGGTA+GGG | - | chr8.2:7328157-7328176 | MS.gene25259:intron | 45.0% | |
| GAGAAACTTAGCGGAGAGAA+TGG | - | chr8.2:7327752-7327771 | MS.gene25259:intron | 45.0% | |
| GCCAATGTTCAACATGCAGT+CGG | - | chr8.2:7330642-7330661 | MS.gene25259:CDS | 45.0% | |
| GGCTTATGGAGATTGCATTG+AGG | - | chr8.2:7327980-7327999 | MS.gene25259:intron | 45.0% | |
| GGTACTCTTTACAGTCCCTA+TGG | + | chr8.2:7329164-7329183 | None:intergenic | 45.0% | |
| GTGTCGTGCTGTCATGTTTA+GGG | - | chr8.2:7328251-7328270 | MS.gene25259:intron | 45.0% | |
| TATGGACAAACCCCACTTAG+TGG | - | chr8.2:7329462-7329481 | MS.gene25259:intron | 45.0% | |
| TCCACTGCTTCAAAGCCTAA+TGG | - | chr8.2:7327608-7327627 | MS.gene25259:intron | 45.0% | |
| TGGAGATGGAGGAATCATAC+CGG | - | chr8.2:7327878-7327897 | MS.gene25259:intron | 45.0% | |
| TGTGTCGTGCTGTCATGTTT+AGG | - | chr8.2:7328250-7328269 | MS.gene25259:intron | 45.0% | |
| TTATACAGGGGTCTAGGTAC+TGG | - | chr8.2:7330616-7330635 | MS.gene25259:CDS | 45.0% | |
| TTGTTAAACGGCGGATGTAG+TGG | + | chr8.2:7328953-7328972 | None:intergenic | 45.0% | |
| ! | AGCATCACTGTGGGTTATGA+TGG | + | chr8.2:7330701-7330720 | None:intergenic | 45.0% |
| ! | AGTTATCGGTGTTTCGATGG+GGG | - | chr8.2:7328406-7328425 | MS.gene25259:intron | 45.0% |
| ! | ATGCTTTCTGGAGAGACTTC+TGG | - | chr8.2:7328182-7328201 | MS.gene25259:intron | 45.0% |
| ! | CCATTGTTGTTGCTCTGTTG+TGG | + | chr8.2:7327861-7327880 | None:intergenic | 45.0% |
| ! | CTTACTCACTGGCTGCATAT+TGG | - | chr8.2:7329075-7329094 | MS.gene25259:intron | 45.0% |
| ! | GATCTGCTGTTTGGTTCGTT+TGG | - | chr8.2:7327816-7327835 | MS.gene25259:intron | 45.0% |
| ! | TCGTGTTGCTCTCAATATGG+AGG | - | chr8.2:7326938-7326957 | MS.gene25259:intron | 45.0% |
| ! | TGCATGCTACTGGTTGGAAA+TGG | - | chr8.2:7330290-7330309 | MS.gene25259:intron | 45.0% |
| ! | TTTGGTTCGTTTGGGATTGC+TGG | - | chr8.2:7327825-7327844 | MS.gene25259:intron | 45.0% |
| !! | ACATCAGTTGGTTTGTTCCC+TGG | - | chr8.2:7330364-7330383 | MS.gene25259:intron | 45.0% |
| !! | CCTGGCTTTGATTTACGGTT+TGG | - | chr8.2:7330382-7330401 | MS.gene25259:intron | 45.0% |
| !! | CGAAGCCTTATTCCACTAAG+TGG | + | chr8.2:7329477-7329496 | None:intergenic | 45.0% |
| !! | GAGGGTATCGTGTTGAAGAA+TGG | - | chr8.2:7327934-7327953 | MS.gene25259:intron | 45.0% |
| !! | GATTGCTTGCTATGTGGCTT+TGG | - | chr8.2:7327424-7327443 | MS.gene25259:intron | 45.0% |
| !! | TAATCAGCACAGGTTGGTGT+AGG | - | chr8.2:7330253-7330272 | MS.gene25259:intron | 45.0% |
| !! | TCCATTAGGCTTTGAAGCAG+TGG | + | chr8.2:7327612-7327631 | None:intergenic | 45.0% |
| AACTCATCCCACGAAGTTGC+AGG | + | chr8.2:7326855-7326874 | None:intergenic | 50.0% | |
| AAGAGGAACCTGCAACTTCG+TGG | - | chr8.2:7326844-7326863 | MS.gene25259:CDS | 50.0% | |
| AAGATAAGGAAGGGATGCGC+TGG | - | chr8.2:7328639-7328658 | MS.gene25259:intron | 50.0% | |
| AGAGGAACCTGCAACTTCGT+GGG | - | chr8.2:7326845-7326864 | MS.gene25259:CDS | 50.0% | |
| AGATGGAGGAATCATACCGG+CGG | - | chr8.2:7327881-7327900 | MS.gene25259:intron | 50.0% | |
| AGCAAGCAATCGCATGGAGT+CGG | + | chr8.2:7327415-7327434 | None:intergenic | 50.0% | |
| CATCCGCCGTTTAACAACAC+TGG | - | chr8.2:7328956-7328975 | MS.gene25259:intron | 50.0% | |
| CCACATAGCAAGCAATCGCA+TGG | + | chr8.2:7327421-7327440 | None:intergenic | 50.0% | |
| CCCGACTGCATGTTGAACAT+TGG | + | chr8.2:7330646-7330665 | None:intergenic | 50.0% | |
| CGAAGAGAGCAAACACTGGT+AGG | - | chr8.2:7328156-7328175 | MS.gene25259:intron | 50.0% | |
| CTAATCGCACTACGGTGGTA+TGG | - | chr8.2:7329671-7329690 | MS.gene25259:intron | 50.0% | |
| CTGTTCTAATCGCACTACGG+TGG | - | chr8.2:7329666-7329685 | MS.gene25259:intron | 50.0% | |
| GAACCAAACAGCAGATCCAC+TGG | + | chr8.2:7327813-7327832 | None:intergenic | 50.0% | |
| GAATCATACCGGCGGATGAT+AGG | - | chr8.2:7327889-7327908 | MS.gene25259:intron | 50.0% | |
| GTTCCGAAGAGAGCAAACAC+TGG | - | chr8.2:7328152-7328171 | MS.gene25259:intron | 50.0% | |
| TCGTGCTGTCATGTTTAGGG+TGG | - | chr8.2:7328254-7328273 | MS.gene25259:intron | 50.0% | |
| TGTTCAACATGCAGTCGGGA+CGG | - | chr8.2:7330647-7330666 | MS.gene25259:CDS | 50.0% | |
| ! | GTTTGGTTCGATTGGACCAG+TGG | - | chr8.2:7327794-7327813 | MS.gene25259:intron | 50.0% |
| !! | ACTTCTGGTTCTGGTTCTCG+AGG | - | chr8.2:7328197-7328216 | MS.gene25259:intron | 50.0% |
| !! | CCATGCGATTGCTTGCTATG+TGG | - | chr8.2:7327418-7327437 | MS.gene25259:intron | 50.0% |
| !! | GCTTGCTATGTGGCTTTGGT+TGG | - | chr8.2:7327428-7327447 | MS.gene25259:intron | 50.0% |
| !! | TCTGGAGAGACTTCTGGTTC+TGG | - | chr8.2:7328188-7328207 | MS.gene25259:intron | 50.0% |
| AGCAATCGCATGGAGTCGGA+AGG | + | chr8.2:7327411-7327430 | None:intergenic | 55.0% | |
| CGAGCAAGCGATTGAAGGGA+TGG | - | chr8.2:7327668-7327687 | MS.gene25259:intron | 55.0% | |
| GGACCAGTGGATCTGCTGTT+TGG | - | chr8.2:7327807-7327826 | MS.gene25259:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7326810 | 7330726 | 7326810 | ID=MS.gene25259 |
| chr8.2 | mRNA | 7326810 | 7330726 | 7326810 | ID=MS.gene25259.t1;Parent=MS.gene25259 |
| chr8.2 | exon | 7330577 | 7330726 | 7330577 | ID=MS.gene25259.t1.exon1;Parent=MS.gene25259.t1 |
| chr8.2 | CDS | 7330577 | 7330726 | 7330577 | ID=cds.MS.gene25259.t1;Parent=MS.gene25259.t1 |
| chr8.2 | exon | 7327459 | 7327611 | 7327459 | ID=MS.gene25259.t1.exon2;Parent=MS.gene25259.t1 |
| chr8.2 | CDS | 7327459 | 7327611 | 7327459 | ID=cds.MS.gene25259.t1;Parent=MS.gene25259.t1 |
| chr8.2 | exon | 7327096 | 7327271 | 7327096 | ID=MS.gene25259.t1.exon3;Parent=MS.gene25259.t1 |
| chr8.2 | CDS | 7327096 | 7327271 | 7327096 | ID=cds.MS.gene25259.t1;Parent=MS.gene25259.t1 |
| chr8.2 | exon | 7326810 | 7326912 | 7326810 | ID=MS.gene25259.t1.exon4;Parent=MS.gene25259.t1 |
| chr8.2 | CDS | 7326810 | 7326912 | 7326810 | ID=cds.MS.gene25259.t1;Parent=MS.gene25259.t1 |
| Gene Sequence |
| Protein sequence |
