Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25676.t1 | XP_013450334.1 | 95 | 383 | 19 | 0 | 14 | 396 | 1 | 383 | 8.80E-214 | 752.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25676.t1 | Q9FVQ0 | 47.3 | 376 | 198 | 0 | 21 | 396 | 5 | 380 | 4.7e-107 | 389.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25676.t1 | A0A072U3V7 | 95.0 | 383 | 19 | 0 | 14 | 396 | 1 | 383 | 6.4e-214 | 752.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049983 | MS.gene25676 | 0.824457 | 7.99E-54 | -1.69E-46 |
| MS.gene050085 | MS.gene25676 | 0.800441 | 1.44E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene25676 | 0.802655 | 5.06E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene25676 | 0.800937 | 1.14E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene25676 | 0.820751 | 5.81E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene25676 | 0.833166 | 6.23E-56 | -1.69E-46 |
| MS.gene053079 | MS.gene25676 | 0.809514 | 1.82E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene25676 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene25676 | 0.805139 | 1.54E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene25676 | 0.82464 | 7.23E-54 | -1.69E-46 |
| MS.gene057034 | MS.gene25676 | 0.827433 | 1.57E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene25676 | 0.82159 | 3.72E-53 | -1.69E-46 |
| MS.gene057371 | MS.gene25676 | 0.803991 | 2.68E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene25676 | 0.829557 | 4.82E-55 | -1.69E-46 |
| MS.gene058292 | MS.gene25676 | 0.804077 | 2.57E-49 | -1.69E-46 |
| MS.gene058976 | MS.gene25676 | 0.801004 | 1.10E-48 | -1.69E-46 |
| MS.gene060933 | MS.gene25676 | 0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene25676 | 0.806451 | 8.18E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene25676 | 0.806963 | 6.37E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene25676 | 0.806122 | 9.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25676.t1 | MTR_7g107690 | 95.039 | 383 | 19 | 0 | 14 | 396 | 1 | 383 | 0.0 | 759 |
| MS.gene25676.t1 | MTR_7g107710 | 67.647 | 374 | 119 | 2 | 21 | 393 | 6 | 378 | 0.0 | 536 |
| MS.gene25676.t1 | MTR_8g432640 | 48.936 | 376 | 189 | 1 | 21 | 396 | 6 | 378 | 5.37e-136 | 394 |
| MS.gene25676.t1 | MTR_5g033260 | 49.593 | 369 | 186 | 0 | 21 | 389 | 6 | 374 | 3.77e-134 | 389 |
| MS.gene25676.t1 | MTR_3g088925 | 49.051 | 369 | 188 | 0 | 21 | 389 | 7 | 375 | 9.08e-132 | 384 |
| MS.gene25676.t1 | MTR_3g088945 | 49.051 | 369 | 188 | 0 | 21 | 389 | 7 | 375 | 3.06e-131 | 382 |
| MS.gene25676.t1 | MTR_3g088955 | 48.238 | 369 | 191 | 0 | 21 | 389 | 7 | 375 | 7.77e-129 | 376 |
| MS.gene25676.t1 | MTR_4g051642 | 48.238 | 369 | 190 | 1 | 21 | 389 | 7 | 374 | 7.90e-126 | 369 |
| MS.gene25676.t1 | MTR_3g109520 | 45.910 | 379 | 199 | 2 | 22 | 395 | 40 | 417 | 2.95e-122 | 360 |
| MS.gene25676.t1 | MTR_6g086870 | 44.974 | 378 | 199 | 3 | 22 | 391 | 21 | 397 | 1.50e-119 | 353 |
| MS.gene25676.t1 | MTR_1g008380 | 46.649 | 373 | 192 | 3 | 22 | 389 | 43 | 413 | 7.42e-118 | 349 |
| MS.gene25676.t1 | MTR_1g069275 | 44.591 | 379 | 200 | 5 | 22 | 394 | 26 | 400 | 2.44e-117 | 348 |
| MS.gene25676.t1 | MTR_1g046230 | 44.267 | 375 | 200 | 4 | 22 | 389 | 25 | 397 | 3.51e-113 | 337 |
| MS.gene25676.t1 | MTR_7g099330 | 42.744 | 379 | 205 | 4 | 22 | 395 | 25 | 396 | 3.53e-113 | 337 |
| MS.gene25676.t1 | MTR_1g011630 | 42.895 | 380 | 206 | 4 | 22 | 396 | 17 | 390 | 9.55e-113 | 335 |
| MS.gene25676.t1 | MTR_7g099160 | 39.550 | 311 | 176 | 4 | 90 | 395 | 214 | 517 | 2.13e-76 | 246 |
| MS.gene25676.t1 | MTR_3g096030 | 39.227 | 181 | 86 | 1 | 17 | 197 | 2 | 158 | 4.72e-43 | 148 |
| MS.gene25676.t1 | MTR_1g041605 | 87.500 | 40 | 5 | 0 | 125 | 164 | 29 | 68 | 5.35e-18 | 78.2 |
| MS.gene25676.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 20 | 227 | 3 | 230 | 5.59e-14 | 72.0 |
| MS.gene25676.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 20 | 227 | 3 | 230 | 8.73e-14 | 72.0 |
| MS.gene25676.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 20 | 227 | 3 | 230 | 1.26e-13 | 72.4 |
| MS.gene25676.t1 | MTR_8g037880 | 24.123 | 228 | 140 | 5 | 20 | 219 | 3 | 225 | 1.62e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25676.t1 | AT1G48910 | 47.340 | 376 | 198 | 0 | 21 | 396 | 5 | 380 | 1.88e-137 | 398 |
| MS.gene25676.t1 | AT1G21430 | 45.333 | 375 | 200 | 4 | 21 | 393 | 9 | 380 | 1.55e-122 | 360 |
| MS.gene25676.t1 | AT1G04610 | 46.011 | 376 | 193 | 5 | 22 | 389 | 38 | 411 | 5.07e-120 | 355 |
| MS.gene25676.t1 | AT4G13260 | 44.772 | 373 | 200 | 2 | 22 | 389 | 29 | 400 | 2.53e-118 | 350 |
| MS.gene25676.t1 | AT5G25620 | 45.867 | 375 | 193 | 4 | 22 | 389 | 33 | 404 | 1.64e-116 | 345 |
| MS.gene25676.t1 | AT5G25620 | 45.867 | 375 | 193 | 4 | 22 | 389 | 33 | 404 | 3.28e-116 | 345 |
| MS.gene25676.t1 | AT4G28720 | 42.402 | 408 | 210 | 8 | 1 | 394 | 8 | 404 | 1.38e-114 | 341 |
| MS.gene25676.t1 | AT5G43890 | 43.421 | 380 | 206 | 5 | 22 | 394 | 26 | 403 | 2.19e-114 | 340 |
| MS.gene25676.t1 | AT1G04180 | 43.536 | 379 | 204 | 5 | 22 | 394 | 26 | 400 | 6.14e-113 | 337 |
| MS.gene25676.t1 | AT4G32540 | 43.733 | 375 | 198 | 5 | 22 | 389 | 22 | 390 | 9.11e-113 | 336 |
| MS.gene25676.t1 | AT4G32540 | 43.316 | 374 | 199 | 5 | 22 | 389 | 22 | 388 | 2.76e-112 | 335 |
| MS.gene25676.t1 | AT5G11320 | 44.772 | 373 | 193 | 4 | 22 | 389 | 18 | 382 | 1.15e-111 | 333 |
| MS.gene25676.t1 | AT2G33230 | 43.883 | 376 | 200 | 5 | 22 | 389 | 33 | 405 | 1.77e-106 | 320 |
| MS.gene25676.t1 | AT5G11320 | 45.201 | 323 | 165 | 3 | 22 | 339 | 18 | 333 | 7.95e-96 | 291 |
| MS.gene25676.t1 | AT4G13260 | 46.454 | 282 | 146 | 1 | 22 | 298 | 29 | 310 | 5.56e-93 | 282 |
| MS.gene25676.t1 | AT4G13260 | 40.339 | 295 | 169 | 3 | 100 | 389 | 5 | 297 | 3.48e-77 | 241 |
| MS.gene25676.t1 | AT1G62560 | 26.638 | 229 | 135 | 6 | 21 | 219 | 13 | 238 | 4.26e-15 | 77.0 |
| MS.gene25676.t1 | AT1G62560 | 26.293 | 232 | 138 | 6 | 18 | 219 | 10 | 238 | 4.85e-15 | 76.6 |
| MS.gene25676.t1 | AT1G65860 | 26.407 | 231 | 136 | 4 | 18 | 218 | 10 | 236 | 7.82e-15 | 76.3 |
| MS.gene25676.t1 | AT1G12160 | 24.457 | 368 | 172 | 12 | 21 | 355 | 12 | 306 | 7.60e-14 | 73.2 |
| MS.gene25676.t1 | AT1G19250 | 27.049 | 244 | 133 | 10 | 15 | 218 | 7 | 245 | 1.65e-13 | 72.4 |
| MS.gene25676.t1 | AT1G12140 | 27.602 | 221 | 147 | 5 | 62 | 271 | 74 | 292 | 1.78e-13 | 72.0 |
| MS.gene25676.t1 | AT1G12140 | 27.602 | 221 | 147 | 5 | 62 | 271 | 74 | 292 | 1.78e-13 | 72.0 |
| MS.gene25676.t1 | AT5G07800 | 26.415 | 265 | 146 | 7 | 12 | 239 | 7 | 259 | 2.70e-13 | 71.6 |
| MS.gene25676.t1 | AT5G61290 | 27.572 | 243 | 136 | 6 | 12 | 218 | 7 | 245 | 2.83e-13 | 71.6 |
| MS.gene25676.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 18 | 218 | 10 | 236 | 1.04e-11 | 66.6 |
| MS.gene25676.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 18 | 218 | 10 | 236 | 1.08e-11 | 66.6 |
| MS.gene25676.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 18 | 218 | 10 | 236 | 1.21e-11 | 66.6 |
| MS.gene25676.t1 | AT1G62620 | 22.511 | 231 | 143 | 4 | 21 | 218 | 13 | 240 | 1.33e-11 | 66.2 |
| MS.gene25676.t1 | AT1G62620 | 22.709 | 251 | 155 | 5 | 21 | 235 | 13 | 260 | 1.71e-11 | 65.9 |
| MS.gene25676.t1 | AT1G12200 | 29.255 | 188 | 121 | 6 | 93 | 271 | 113 | 297 | 5.92e-11 | 63.9 |
| MS.gene25676.t1 | AT1G12200 | 29.255 | 188 | 121 | 6 | 93 | 271 | 113 | 297 | 7.25e-11 | 63.9 |
Find 0 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTAAATCAAAATAATT+TGG | - | 51705:11481-11500 | MS.gene25676:CDS | 10.0% |
| !! | TAATATATTCAATATAGTAT+TGG | + | 51705:11200-11219 | None:intergenic | 10.0% |
| !! | TAGAATAAATATATAAATGA+CGG | - | 51705:10297-10316 | MS.gene25676:intron | 10.0% |
| !!! | AGTTTTTTATTTTTAAAACT+CGG | - | 51705:11843-11862 | MS.gene25676:intron | 10.0% |
| !!! | TAATTAATTATTTTTTGGTA+GGG | - | 51705:12904-12923 | MS.gene25676:CDS | 10.0% |
| !! | AAAACAAAACAAAAAACATT+TGG | + | 51705:9878-9897 | None:intergenic | 15.0% |
| !! | AAAATAAAGGATTAAATTGA+TGG | - | 51705:10992-11011 | MS.gene25676:intron | 15.0% |
| !! | AACAAATTTATTTAAGTGAA+AGG | - | 51705:12204-12223 | MS.gene25676:intron | 15.0% |
| !! | AATAAACAATGTAATTAGAA+TGG | - | 51705:11439-11458 | MS.gene25676:intron | 15.0% |
| !! | AGAATAAATATATAAATGAC+GGG | - | 51705:10298-10317 | MS.gene25676:intron | 15.0% |
| !! | TAAAAATAGCGAAATTAAAA+AGG | - | 51705:11797-11816 | MS.gene25676:intron | 15.0% |
| !! | TAATATATGTTACATGAAAA+TGG | - | 51705:12814-12833 | MS.gene25676:CDS | 15.0% |
| !! | TTTGCATAAACAAATTTATT+AGG | + | 51705:12215-12196 | None:intergenic | 15.0% |
| !!! | AATTAATTATTTTTTGGTAG+GGG | - | 51705:12905-12924 | MS.gene25676:CDS | 15.0% |
| !!! | ACAAATATTTTGTTTTTCAA+AGG | + | 51705:11768-11787 | None:intergenic | 15.0% |
| !!! | CAAATATTTTGTTTTTCAAA+GGG | + | 51705:11767-11786 | None:intergenic | 15.0% |
| !!! | CATTGTTTATTATTTTAGAT+TGG | + | 51705:11430-11449 | None:intergenic | 15.0% |
| !!! | CTAATTAATTATTTTTTGGT+AGG | - | 51705:12903-12922 | MS.gene25676:CDS | 15.0% |
| !!! | TAACTTTTTTTTTGAAAGAA+AGG | - | 51705:12232-12251 | MS.gene25676:intron | 15.0% |
| !!! | TATTGTAAAAACTTTTGTTT+AGG | + | 51705:9409-9428 | None:intergenic | 15.0% |
| !!! | TTTATTATTTTAGATTGGTT+TGG | + | 51705:11425-11444 | None:intergenic | 15.0% |
| !! | ACCTAAAATAACATTTAGAT+GGG | - | 51705:12166-12185 | MS.gene25676:intron | 20.0% |
| !! | AGGTTATATAACTATAAACA+AGG | - | 51705:12252-12271 | MS.gene25676:intron | 20.0% |
| !! | ATTAGTATAAAGTATATCTG+AGG | + | 51705:10487-10506 | None:intergenic | 20.0% |
| !! | GATAATACATAATATATGCA+AGG | - | 51705:11054-11073 | MS.gene25676:intron | 20.0% |
| !! | GATGAAATAATGATAACTTA+TGG | + | 51705:10889-10908 | None:intergenic | 20.0% |
| !! | GTATTCAAGTACATAATTTA+AGG | + | 51705:10949-10968 | None:intergenic | 20.0% |
| !! | TACCTAAAATAACATTTAGA+TGG | - | 51705:12165-12184 | MS.gene25676:intron | 20.0% |
| !! | TCCATAAACAAGTAAAATAA+AGG | - | 51705:10979-10998 | MS.gene25676:intron | 20.0% |
| !! | TTAGTATAAAGTATATCTGA+GGG | + | 51705:10486-10505 | None:intergenic | 20.0% |
| !!! | ATGTCATTTTACTAAAAAGA+TGG | - | 51705:12279-12298 | MS.gene25676:intron | 20.0% |
| !!! | ATTAATTATTTTTTGGTAGG+GGG | - | 51705:12906-12925 | MS.gene25676:CDS | 20.0% |
| !!! | CTAAATGTTATTTTAGGTAT+TGG | + | 51705:12164-12183 | None:intergenic | 20.0% |
| !!! | CTTTTTGCATTTTTTAAAAC+TGG | - | 51705:11689-11708 | MS.gene25676:intron | 20.0% |
| !!! | TCCTTTATTTTACTTGTTTA+TGG | + | 51705:10983-11002 | None:intergenic | 20.0% |
| ! | AAAACTCTATATCAGACTAT+AGG | - | 51705:10034-10053 | MS.gene25676:intron | 25.0% |
| ! | AACATACGTCAAAGTATATA+TGG | + | 51705:12867-12886 | None:intergenic | 25.0% |
| ! | AATGAAAGAGTAATAGTTGT+TGG | - | 51705:9190-9209 | MS.gene25676:CDS | 25.0% |
| ! | AATTAAGTCTCAAGAGTTAA+AGG | - | 51705:10762-10781 | MS.gene25676:intron | 25.0% |
| ! | ACCTCTTAAAAGAAATTAAG+AGG | - | 51705:11168-11187 | MS.gene25676:intron | 25.0% |
| ! | ATATATACTTTGACGTATGT+TGG | - | 51705:12866-12885 | MS.gene25676:CDS | 25.0% |
| ! | ATGCTTAGTAAAATGGTTTA+CGG | - | 51705:10637-10656 | MS.gene25676:intron | 25.0% |
| ! | CAATAGTTTAAAGACCAAAT+TGG | - | 51705:11021-11040 | MS.gene25676:intron | 25.0% |
| ! | CACTCTTAAAAGAAATTAAG+TGG | - | 51705:12080-12099 | MS.gene25676:intron | 25.0% |
| ! | CCTAAAATAACATTTAGATG+GGG | - | 51705:12167-12186 | MS.gene25676:intron | 25.0% |
| ! | GATTACAAATACAGATTTGT+AGG | + | 51705:9997-10016 | None:intergenic | 25.0% |
| ! | TACTTGACCTTCATATAAAA+GGG | + | 51705:10703-10722 | None:intergenic | 25.0% |
| ! | TGTACTTGAATACATCAATT+TGG | - | 51705:10956-10975 | MS.gene25676:intron | 25.0% |
| ! | TGTGATTGATTATGTAACTT+TGG | - | 51705:10415-10434 | MS.gene25676:intron | 25.0% |
| ! | TTTAAAGACCAAATTGGTAT+TGG | - | 51705:11027-11046 | MS.gene25676:intron | 25.0% |
| !! | AACCATATTAGGCAAATTTT+AGG | + | 51705:10850-10869 | None:intergenic | 25.0% |
| !! | AAGAATGTCCTTTTCAAAAA+TGG | - | 51705:12553-12572 | MS.gene25676:CDS | 25.0% |
| !! | ACCTCTTAATTTCTTTTAAG+AGG | + | 51705:11172-11191 | None:intergenic | 25.0% |
| !! | AGATTTTGTATAGAATTGCA+CGG | - | 51705:10200-10219 | MS.gene25676:intron | 25.0% |
| !! | CAATTTGATCTTTCTTTTTG+TGG | + | 51705:11102-11121 | None:intergenic | 25.0% |
| !! | TGTTAGTTTCAAGACTAAAT+TGG | - | 51705:11131-11150 | MS.gene25676:intron | 25.0% |
| !! | TTTTATATGAAGGTCAAGTA+CGG | - | 51705:10703-10722 | MS.gene25676:intron | 25.0% |
| !!! | AAAATTGTTTTGCTTCACTA+TGG | - | 51705:9287-9306 | MS.gene25676:CDS | 25.0% |
| !!! | ATTGTGTTGTATGTTACTTT+AGG | - | 51705:12498-12517 | MS.gene25676:CDS | 25.0% |
| !!! | CAACAAAAAGGTTTTTTACT+CGG | + | 51705:10063-10082 | None:intergenic | 25.0% |
| !!! | TTTTAAGAGTGTTAGTTTCA+GGG | + | 51705:12071-12090 | None:intergenic | 25.0% |
| !!! | TTTTGTTTAGGAATGTATGA+TGG | + | 51705:9397-9416 | None:intergenic | 25.0% |
| AAAATTATAGACAGAGCACA+TGG | + | 51705:9948-9967 | None:intergenic | 30.0% | |
| AAGTATCCTATTATTGACGT+TGG | - | 51705:10727-10746 | MS.gene25676:intron | 30.0% | |
| AAGTTGACTAAAACAACTCT+TGG | + | 51705:11893-11912 | None:intergenic | 30.0% | |
| AGAATTGCACGGATATATAT+GGG | - | 51705:10211-10230 | MS.gene25676:intron | 30.0% | |
| AGCTTGTACATTAAATCTTG+AGG | + | 51705:11338-11357 | None:intergenic | 30.0% | |
| ATATGCTGGAGAAGAATTTA+AGG | + | 51705:11736-11755 | None:intergenic | 30.0% | |
| ATATTGAAATCCACAAGAAG+TGG | - | 51705:11295-11314 | MS.gene25676:intron | 30.0% | |
| ATTCAACTGGGTTTAAGAAT+GGG | - | 51705:9659-9678 | MS.gene25676:CDS | 30.0% | |
| CACCTAAAATTTGCCTAATA+TGG | - | 51705:10845-10864 | MS.gene25676:intron | 30.0% | |
| GAATACCATCATCATTCAAA+AGG | + | 51705:12939-12958 | None:intergenic | 30.0% | |
| GTACTTGACCTTCATATAAA+AGG | + | 51705:10704-10723 | None:intergenic | 30.0% | |
| GTAGAAATAGAATGCATAAG+TGG | - | 51705:12529-12548 | MS.gene25676:CDS | 30.0% | |
| TACATAATATATGCAAGGTC+CGG | - | 51705:11059-11078 | MS.gene25676:intron | 30.0% | |
| TAGAATTGCACGGATATATA+TGG | - | 51705:10210-10229 | MS.gene25676:intron | 30.0% | |
| TATCCATACCAATACCAATT+TGG | + | 51705:11038-11057 | None:intergenic | 30.0% | |
| TGAGACTATAAGGTGTATTT+GGG | - | 51705:11395-11414 | MS.gene25676:intron | 30.0% | |
| TGTAGAAACCAAAAGAAATG+TGG | - | 51705:12841-12860 | MS.gene25676:CDS | 30.0% | |
| TGTTTGCATATTCTACTAAG+AGG | + | 51705:11232-11251 | None:intergenic | 30.0% | |
| TTGTACATTAAATCTTGAGG+AGG | + | 51705:11335-11354 | None:intergenic | 30.0% | |
| TTTGATGTGTGCATCTTAAA+AGG | + | 51705:9901-9920 | None:intergenic | 30.0% | |
| ! | AAAGGTACGTTAGCAATAAT+TGG | - | 51705:10780-10799 | MS.gene25676:intron | 30.0% |
| ! | AAGAATGGTTTGTATTGTGT+TGG | - | 51705:12991-13010 | MS.gene25676:CDS | 30.0% |
| ! | ATATATGGCCACATTTCTTT+TGG | + | 51705:12852-12871 | None:intergenic | 30.0% |
| ! | ATTGACTTCGAAACCATATT+AGG | + | 51705:10861-10880 | None:intergenic | 30.0% |
| ! | CAAAACAATTTTCTCTTTCG+AGG | + | 51705:9279-9298 | None:intergenic | 30.0% |
| ! | CTTCAATTTCAGGTACAAAA+GGG | + | 51705:9609-9628 | None:intergenic | 30.0% |
| ! | CTTTTGTACCTGAAATTGAA+GGG | - | 51705:9608-9627 | MS.gene25676:CDS | 30.0% |
| ! | GATTACCTTTTGAATGATGA+TGG | - | 51705:12931-12950 | MS.gene25676:CDS | 30.0% |
| ! | TCTGATGAAGTATTTGTCAA+TGG | - | 51705:10591-10610 | MS.gene25676:intron | 30.0% |
| ! | TTGAGACTTAATTTTGCGAA+AGG | + | 51705:10755-10774 | None:intergenic | 30.0% |
| ! | TTTGATCTTTCTTTTTGTGG+TGG | + | 51705:11099-11118 | None:intergenic | 30.0% |
| !! | AAGAAGTGGATAAGTTGATT+TGG | - | 51705:11309-11328 | MS.gene25676:intron | 30.0% |
| !! | ATGAACATGTTCTTGTTGTT+GGG | - | 51705:9695-9714 | MS.gene25676:CDS | 30.0% |
| !! | CTTATGCATTCTATTTCTAC+CGG | + | 51705:12529-12548 | None:intergenic | 30.0% |
| !! | GCAATTGACCATTTTTGAAA+AGG | + | 51705:12564-12583 | None:intergenic | 30.0% |
| !! | GGTATTGGTTATGTAACTAT+TGG | + | 51705:12149-12168 | None:intergenic | 30.0% |
| !! | TTTAAGAGTGTTAGTTTCAG+GGG | + | 51705:12070-12089 | None:intergenic | 30.0% |
| !!! | CCCCATCTAAATGTTATTTT+AGG | + | 51705:12170-12189 | None:intergenic | 30.0% |
| !!! | CCTTTTTGTTGATGATGAAA+CGG | - | 51705:10072-10091 | MS.gene25676:intron | 30.0% |
| !!! | CTTTTAAGAGTGTTAGTTTC+AGG | + | 51705:12072-12091 | None:intergenic | 30.0% |
| !!! | CTTTTTGTTGATGATGAAAC+GGG | - | 51705:10073-10092 | MS.gene25676:intron | 30.0% |
| !!! | TATGTTACTTTAGGTTTTGC+CGG | - | 51705:12507-12526 | MS.gene25676:CDS | 30.0% |
| AACATCAACAACAGCAACAA+CGG | - | 51705:12744-12763 | MS.gene25676:CDS | 35.0% | |
| AAGGCTATGAATAAGGATTC+CGG | - | 51705:9526-9545 | MS.gene25676:intron | 35.0% | |
| AAGGTTCCAACGTCAATAAT+AGG | + | 51705:10736-10755 | None:intergenic | 35.0% | |
| ACATAATATATGCAAGGTCC+GGG | - | 51705:11060-11079 | MS.gene25676:intron | 35.0% | |
| ACGAATACAATGTAATGTGC+AGG | - | 51705:10528-10547 | MS.gene25676:intron | 35.0% | |
| ACGTTAGCAATAATTGGCAT+TGG | - | 51705:10786-10805 | MS.gene25676:intron | 35.0% | |
| AGTTGAATGAATCACTTTCC+CGG | + | 51705:9647-9666 | None:intergenic | 35.0% | |
| ATCAACTTATCCACTTCTTG+TGG | + | 51705:11308-11327 | None:intergenic | 35.0% | |
| ATGCAAAAAGATAGTTCGTC+AGG | + | 51705:11679-11698 | None:intergenic | 35.0% | |
| ATTCATTGGAAGGGAAAGAA+TGG | - | 51705:12976-12995 | MS.gene25676:CDS | 35.0% | |
| ATTCTTTCCCTTCCAATGAA+TGG | + | 51705:12977-12996 | None:intergenic | 35.0% | |
| CAAATCCAGCTAAAATGCAA+GGG | - | 51705:12010-12029 | MS.gene25676:intron | 35.0% | |
| CATTCAACTGGGTTTAAGAA+TGG | - | 51705:9658-9677 | MS.gene25676:CDS | 35.0% | |
| CCGTTTCATCATCAACAAAA+AGG | + | 51705:10075-10094 | None:intergenic | 35.0% | |
| GATGTCACAAATTATGGAGT+TGG | - | 51705:10661-10680 | MS.gene25676:intron | 35.0% | |
| GGAAAGTGATTCATTCAACT+GGG | - | 51705:9647-9666 | MS.gene25676:CDS | 35.0% | |
| GGATTGTATAAGGAATGGAT+TGG | + | 51705:9258-9277 | None:intergenic | 35.0% | |
| GTGAGACTATAAGGTGTATT+TGG | - | 51705:11394-11413 | MS.gene25676:intron | 35.0% | |
| TAATGCATACATCTTCAGCT+AGG | - | 51705:11541-11560 | MS.gene25676:CDS | 35.0% | |
| TACGGAGATGTCACAAATTA+TGG | - | 51705:10655-10674 | MS.gene25676:intron | 35.0% | |
| TCAAATCCAGCTAAAATGCA+AGG | - | 51705:12009-12028 | MS.gene25676:intron | 35.0% | |
| TCTCTTTCGAGGATTGTATA+AGG | + | 51705:9268-9287 | None:intergenic | 35.0% | |
| TCTGAATCATTCTTCAAGTG+AGG | + | 51705:12342-12361 | None:intergenic | 35.0% | |
| TGTATTGTGTTGGACTATCA+AGG | - | 51705:13001-13020 | MS.gene25676:CDS | 35.0% | |
| TTCGAGGATTGTATAAGGAA+TGG | + | 51705:9263-9282 | None:intergenic | 35.0% | |
| TTCTTTCCCTTCCAATGAAT+GGG | + | 51705:12976-12995 | None:intergenic | 35.0% | |
| ! | ATGTATGATGGAAAAGAAGG+TGG | + | 51705:9385-9404 | None:intergenic | 35.0% |
| ! | ATTGCACTTTTGGTGGAATT+TGG | + | 51705:11623-11642 | None:intergenic | 35.0% |
| ! | CCAAAAGTGCAATTCTGATA+AGG | - | 51705:11630-11649 | MS.gene25676:CDS | 35.0% |
| ! | CCTTATCAGAATTGCACTTT+TGG | + | 51705:11633-11652 | None:intergenic | 35.0% |
| ! | CCTTCAATTTCAGGTACAAA+AGG | + | 51705:9610-9629 | None:intergenic | 35.0% |
| ! | CCTTTTGTACCTGAAATTGA+AGG | - | 51705:9607-9626 | MS.gene25676:CDS | 35.0% |
| ! | GAAGTATTTGTCAATGGAGA+TGG | - | 51705:10597-10616 | MS.gene25676:intron | 35.0% |
| ! | GACTCTATTATTTTCTGCAC+CGG | - | 51705:12592-12611 | MS.gene25676:CDS | 35.0% |
| ! | GATGAACATGTTCTTGTTGT+TGG | - | 51705:9694-9713 | MS.gene25676:CDS | 35.0% |
| ! | GATGGTGATGCTTAGTAAAA+TGG | - | 51705:10630-10649 | MS.gene25676:intron | 35.0% |
| ! | GGAATATGAAGGAAGGTTTT+TGG | - | 51705:9558-9577 | MS.gene25676:intron | 35.0% |
| ! | GGAATGTATGATGGAAAAGA+AGG | + | 51705:9388-9407 | None:intergenic | 35.0% |
| ! | GTTAGCTGTTGATTATACGT+AGG | - | 51705:10372-10391 | MS.gene25676:intron | 35.0% |
| ! | TATCAGAATTGCACTTTTGG+TGG | + | 51705:11630-11649 | None:intergenic | 35.0% |
| ! | TCACAAATTATGGAGTTGGT+AGG | - | 51705:10665-10684 | MS.gene25676:intron | 35.0% |
| ! | TGTATGATGGAAAAGAAGGT+GGG | + | 51705:9384-9403 | None:intergenic | 35.0% |
| !! | AGACCAAATTGGTATTGGTA+TGG | - | 51705:11032-11051 | MS.gene25676:intron | 35.0% |
| !! | ATAATTGGCATTGGTTGCTT+TGG | - | 51705:10795-10814 | MS.gene25676:intron | 35.0% |
| !! | ATGATGAAGGTTCTGAGAAA+TGG | - | 51705:9497-9516 | MS.gene25676:intron | 35.0% |
| !! | TTCTGGAATGGAAATTGCAT+TGG | - | 51705:9726-9745 | MS.gene25676:intron | 35.0% |
| !!! | GCTCGCAAAATTGTTTTTTG+AGG | + | 51705:9345-9364 | None:intergenic | 35.0% |
| !!! | TGCATTTTAGCTGGATTTGA+TGG | + | 51705:12009-12028 | None:intergenic | 35.0% |
| AAAGGGACATACACATATGC+TGG | + | 51705:11750-11769 | None:intergenic | 40.0% | |
| AAAGTATATCTGAGGGTGAC+AGG | + | 51705:10479-10498 | None:intergenic | 40.0% | |
| AAGTTACCCCATTCATTGGA+AGG | - | 51705:12966-12985 | MS.gene25676:CDS | 40.0% | |
| AATATTCCCTTCACGGAAGA+TGG | - | 51705:10175-10194 | MS.gene25676:intron | 40.0% | |
| AATCTTACCATCTTCCGTGA+AGG | + | 51705:10185-10204 | None:intergenic | 40.0% | |
| AGAGTAATAGTTGTTGGAGC+AGG | - | 51705:9196-9215 | MS.gene25676:CDS | 40.0% | |
| AGGTTGAGGAATATGAAGGA+AGG | - | 51705:9551-9570 | MS.gene25676:intron | 40.0% | |
| AGTTACCCCATTCATTGGAA+GGG | - | 51705:12967-12986 | MS.gene25676:CDS | 40.0% | |
| ATCTACCCACAAATGGCTTA+AGG | - | 51705:12624-12643 | MS.gene25676:CDS | 40.0% | |
| ATCTTACCATCTTCCGTGAA+GGG | + | 51705:10184-10203 | None:intergenic | 40.0% | |
| ATCTTCCGTGAAGGGAATAT+TGG | + | 51705:10176-10195 | None:intergenic | 40.0% | |
| CAGCAACAACGGTAAAATGA+AGG | - | 51705:12755-12774 | MS.gene25676:CDS | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | - | 51705:11061-11080 | MS.gene25676:intron | 40.0% | |
| CCAAACCTTAAGCCATTTGT+GGG | + | 51705:12632-12651 | None:intergenic | 40.0% | |
| CTATCAAGGAGAGGTTTCTA+TGG | - | 51705:13015-13034 | MS.gene25676:CDS | 40.0% | |
| CTCTTCAACCCTTCAATTTC+AGG | + | 51705:9619-9638 | None:intergenic | 40.0% | |
| GAAGGTGAAGGCTATGAATA+AGG | - | 51705:9519-9538 | MS.gene25676:intron | 40.0% | |
| GAGAATGCAGAGTATGATGA+AGG | - | 51705:9484-9503 | MS.gene25676:intron | 40.0% | |
| GCATTGGATCTTATCAACCA+TGG | - | 51705:9742-9761 | MS.gene25676:intron | 40.0% | |
| GGGAAAGTGATTCATTCAAC+TGG | - | 51705:9646-9665 | MS.gene25676:CDS | 40.0% | |
| GTATTTGTCAATGGAGATGG+TGG | - | 51705:10600-10619 | MS.gene25676:intron | 40.0% | |
| GTGCAATTCTGATAAGGACA+TGG | - | 51705:11636-11655 | MS.gene25676:CDS | 40.0% | |
| TATGAATAAGGATTCCGGTG+AGG | - | 51705:9531-9550 | MS.gene25676:intron | 40.0% | |
| TCAAGAGATCTACCCACAAA+TGG | - | 51705:12617-12636 | MS.gene25676:CDS | 40.0% | |
| TCAAGTGGCATGCTGAATTT+GGG | - | 51705:10562-10581 | MS.gene25676:intron | 40.0% | |
| TCCAAACCTTAAGCCATTTG+TGG | + | 51705:12633-12652 | None:intergenic | 40.0% | |
| TCTTCCGTGAAGGGAATATT+GGG | + | 51705:10175-10194 | None:intergenic | 40.0% | |
| TCTTTCCCTTCCAATGAATG+GGG | + | 51705:12975-12994 | None:intergenic | 40.0% | |
| TTCATATTCCTCAACCTCAC+CGG | + | 51705:9548-9567 | None:intergenic | 40.0% | |
| TTCCAATGAATGGGGTAACT+TGG | + | 51705:12967-12986 | None:intergenic | 40.0% | |
| ! | AAGGGTTGAAGAGTTTTACC+GGG | - | 51705:9626-9645 | MS.gene25676:CDS | 40.0% |
| ! | ACTTTTGGTGGAATTTGGAG+TGG | + | 51705:11618-11637 | None:intergenic | 40.0% |
| ! | ATCTTTCTTTTTGTGGTGGC+CGG | + | 51705:11095-11114 | None:intergenic | 40.0% |
| ! | CAGGTTCACATTTTGTCAAG+TGG | - | 51705:10547-10566 | MS.gene25676:intron | 40.0% |
| ! | GAAGGGTTGAAGAGTTTTAC+CGG | - | 51705:9625-9644 | MS.gene25676:CDS | 40.0% |
| ! | TAAATGACGGGATGAATGAG+TGG | - | 51705:10310-10329 | MS.gene25676:intron | 40.0% |
| ! | TCAAGTGAGGTACTTTGCAA+GGG | + | 51705:12329-12348 | None:intergenic | 40.0% |
| ! | TTCAAGTGAGGTACTTTGCA+AGG | + | 51705:12330-12349 | None:intergenic | 40.0% |
| ! | TTCTGAGAAATGGAAGGTGA+AGG | - | 51705:9507-9526 | MS.gene25676:intron | 40.0% |
| !! | CGATTGAAGTTTTAGCACCA+TGG | + | 51705:9762-9781 | None:intergenic | 40.0% |
| !! | TGAAGGTTCTGAGAAATGGA+AGG | - | 51705:9501-9520 | MS.gene25676:intron | 40.0% |
| !!! | TGAAGGAAGGTTTTTGGTTG+TGG | - | 51705:9564-9583 | MS.gene25676:intron | 40.0% |
| AGCCAAGTTACCCCATTCAT+TGG | - | 51705:12962-12981 | MS.gene25676:CDS | 45.0% | |
| ATATAAAAGGGACCCTCGCT+GGG | + | 51705:10691-10710 | None:intergenic | 45.0% | |
| ATGAATGGGGTAACTTGGCT+TGG | + | 51705:12962-12981 | None:intergenic | 45.0% | |
| CAAGTGGCATGCTGAATTTG+GGG | - | 51705:10563-10582 | MS.gene25676:intron | 45.0% | |
| CCAGCTAAAATGCAAGGGTT+AGG | - | 51705:12015-12034 | MS.gene25676:intron | 45.0% | |
| CCCACAAATGGCTTAAGGTT+TGG | - | 51705:12629-12648 | MS.gene25676:CDS | 45.0% | |
| CTTCCCCAATATTCCCTTCA+CGG | - | 51705:10168-10187 | MS.gene25676:intron | 45.0% | |
| CTTCCGTGAAGGGAATATTG+GGG | + | 51705:10174-10193 | None:intergenic | 45.0% | |
| GATGGAAAAGAAGGTGGGAA+TGG | + | 51705:9379-9398 | None:intergenic | 45.0% | |
| GGACGAAGTGTGAGACTATA+AGG | - | 51705:11385-11404 | MS.gene25676:intron | 45.0% | |
| GGTGAGGTTGAGGAATATGA+AGG | - | 51705:9547-9566 | MS.gene25676:intron | 45.0% | |
| GTCAAGTGGCATGCTGAATT+TGG | - | 51705:10561-10580 | MS.gene25676:intron | 45.0% | |
| GTTGTTGGGTCTGGAAATTC+TGG | - | 51705:9709-9728 | MS.gene25676:intron | 45.0% | |
| GTTGTTGTGACGTGACGAAT+GGG | - | 51705:12474-12493 | MS.gene25676:CDS | 45.0% | |
| TCCACTGTTCTGTGATACAG+AGG | + | 51705:9466-9485 | None:intergenic | 45.0% | |
| TCCTCTGTATCACAGAACAG+TGG | - | 51705:9462-9481 | MS.gene25676:intron | 45.0% | |
| TCGGTATCTGACCTAACGAT+CGG | - | 51705:11862-11881 | MS.gene25676:intron | 45.0% | |
| TCTTGGTTTAGCCGATCGTT+AGG | + | 51705:11876-11895 | None:intergenic | 45.0% | |
| TGAATGGGGTAACTTGGCTT+GGG | + | 51705:12961-12980 | None:intergenic | 45.0% | |
| TGTGTTGGACTATCAAGGAG+AGG | - | 51705:13006-13025 | MS.gene25676:CDS | 45.0% | |
| TGTTGTTGTGACGTGACGAA+TGG | - | 51705:12473-12492 | MS.gene25676:CDS | 45.0% | |
| TTCAATCGTCGTTCGAAGCA+AGG | - | 51705:9774-9793 | MS.gene25676:intron | 45.0% | |
| ! | CAAGTGAGGTACTTTGCAAG+GGG | + | 51705:12328-12347 | None:intergenic | 45.0% |
| ! | CGAGGGTCCCTTTTATATGA+AGG | - | 51705:10693-10712 | MS.gene25676:intron | 45.0% |
| ! | TAAAACTGGCTCCAGAAGCA+GGG | - | 51705:11703-11722 | MS.gene25676:intron | 45.0% |
| ! | TCTTTCTTTTTGTGGTGGCC+GGG | + | 51705:11094-11113 | None:intergenic | 45.0% |
| ! | TGGGTCTGGAAATTCTGGAA+TGG | - | 51705:9714-9733 | MS.gene25676:intron | 45.0% |
| ! | TTAAAACTGGCTCCAGAAGC+AGG | - | 51705:11702-11721 | MS.gene25676:intron | 45.0% |
| ! | TTCAGGGGCAGAGATTTTGA+AGG | + | 51705:12055-12074 | None:intergenic | 45.0% |
| ! | TTTGGTGGAATTTGGAGTGG+TGG | + | 51705:11615-11634 | None:intergenic | 45.0% |
| !! | CATGTTCTTGTTGTTGGGTC+TGG | - | 51705:9700-9719 | MS.gene25676:intron | 45.0% |
| !! | CCTAACCCTTGCATTTTAGC+TGG | + | 51705:12018-12037 | None:intergenic | 45.0% |
| !! | GGAGATGGTGGATTCAATGA+TGG | - | 51705:10612-10631 | MS.gene25676:intron | 45.0% |
| !!! | AGGTTTTTGGTTGTGGCTAG+TGG | - | 51705:9571-9590 | MS.gene25676:intron | 45.0% |
| !! | TTAAAAATAAAAAACTAATA+CGG | + | 51705:11839-11858 | None:intergenic | 5.0% |
| !!! | TAATCTAATTAATTATTTTT+TGG | - | 51705:12899-12918 | MS.gene25676:CDS | 5.0% |
| AGGAGAGGTTTCTATGGAGC+TGG | - | 51705:13021-13040 | MS.gene25676:CDS | 50.0% | |
| AGGTTTCTATGGAGCTGGTG+CGG | - | 51705:13026-13045 | MS.gene25676:CDS | 50.0% | |
| CATATAAAAGGGACCCTCGC+TGG | + | 51705:10692-10711 | None:intergenic | 50.0% | |
| CTGCTACTGAGAGACCAGAA+GGG | + | 51705:9222-9241 | None:intergenic | 50.0% | |
| GCTTCAGTCTCAAGATCCAC+AGG | - | 51705:11364-11383 | MS.gene25676:intron | 50.0% | |
| GTGGGTAGATCTCTTGAAGC+CGG | + | 51705:12614-12633 | None:intergenic | 50.0% | |
| TAAGGATTCCGGTGAGGTTG+AGG | - | 51705:9537-9556 | MS.gene25676:intron | 50.0% | |
| TAGTCTCACACTTCGTCCTG+TGG | + | 51705:11383-11402 | None:intergenic | 50.0% | |
| ! | AAAACTGGCTCCAGAAGCAG+GGG | - | 51705:11704-11723 | MS.gene25676:intron | 50.0% |
| ! | CTTTCTTTTTGTGGTGGCCG+GGG | + | 51705:11093-11112 | None:intergenic | 50.0% |
| ! | GAAGGTGGGAATGGTTTGTG+AGG | + | 51705:9370-9389 | None:intergenic | 50.0% |
| GCTGCTACTGAGAGACCAGA+AGG | + | 51705:9223-9242 | None:intergenic | 55.0% | |
| ! | GGAATTTGGAGTGGTGGAGG+AGG | + | 51705:11609-11628 | None:intergenic | 55.0% |
| ! | GGTGGAATTTGGAGTGGTGG+AGG | + | 51705:11612-11631 | None:intergenic | 55.0% |
| AAGGCCAATGCCCCTGCTTC+TGG | + | 51705:11717-11736 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | - | 51705:11073-11092 | MS.gene25676:intron | 60.0% | |
| GTTGTTGGAGCAGGCCCTTC+TGG | - | 51705:9205-9224 | MS.gene25676:CDS | 60.0% | |
| ! | TGGAGTGGTGGAGGAGGAAG+TGG | + | 51705:11603-11622 | None:intergenic | 60.0% |
| ! | GGCTCCAGAAGCAGGGGCAT+TGG | - | 51705:11710-11729 | MS.gene25676:intron | 65.0% |
| !! | GGAGTTGGTAGGCCCAGCGA+GGG | - | 51705:10676-10695 | MS.gene25676:intron | 65.0% |
| !! | TGGAGTTGGTAGGCCCAGCG+AGG | - | 51705:10675-10694 | MS.gene25676:intron | 65.0% |
| GGTGGCCGGGGTTTGAACCC+CGG | + | 51705:11081-11100 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51705 | gene | 9139 | 13098 | 9139 | ID=MS.gene25676 |
| 51705 | mRNA | 9139 | 13098 | 9139 | ID=MS.gene25676.t1;Parent=MS.gene25676 |
| 51705 | exon | 12442 | 13098 | 12442 | ID=MS.gene25676.t1.exon1;Parent=MS.gene25676.t1 |
| 51705 | CDS | 12442 | 13098 | 12442 | ID=cds.MS.gene25676.t1;Parent=MS.gene25676.t1 |
| 51705 | exon | 11454 | 11687 | 11454 | ID=MS.gene25676.t1.exon2;Parent=MS.gene25676.t1 |
| 51705 | CDS | 11454 | 11687 | 11454 | ID=cds.MS.gene25676.t1;Parent=MS.gene25676.t1 |
| 51705 | exon | 9592 | 9717 | 9592 | ID=MS.gene25676.t1.exon3;Parent=MS.gene25676.t1 |
| 51705 | CDS | 9592 | 9717 | 9592 | ID=cds.MS.gene25676.t1;Parent=MS.gene25676.t1 |
| 51705 | exon | 9139 | 9312 | 9139 | ID=MS.gene25676.t1.exon4;Parent=MS.gene25676.t1 |
| 51705 | CDS | 9139 | 9312 | 9139 | ID=cds.MS.gene25676.t1;Parent=MS.gene25676.t1 |
| Gene Sequence |
| Protein sequence |
