Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25737.t1 | XP_013461171.1 | 91.4 | 361 | 31 | 0 | 1 | 361 | 1 | 361 | 5.80E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25737.t1 | Q6L8G0 | 52.1 | 353 | 159 | 2 | 9 | 361 | 11 | 353 | 5.1e-92 | 339.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25737.t1 | A0A072VAI3 | 91.4 | 361 | 31 | 0 | 1 | 361 | 1 | 361 | 4.2e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066193 | MS.gene25737 | PPI |
| MS.gene25737 | MS.gene50197 | PPI |
| MS.gene25737 | MS.gene038972 | PPI |
| MS.gene009810 | MS.gene25737 | PPI |
| MS.gene25737 | MS.gene56999 | PPI |
| MS.gene62494 | MS.gene25737 | PPI |
| MS.gene045723 | MS.gene25737 | PPI |
| MS.gene25737 | MS.gene54167 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25737.t1 | MTR_3g081640 | 95.845 | 361 | 15 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene25737.t1 | MTR_3g081580 | 85.165 | 364 | 45 | 4 | 1 | 361 | 1 | 358 | 0.0 | 593 |
| MS.gene25737.t1 | MTR_3g082050 | 85.596 | 361 | 40 | 4 | 1 | 361 | 1 | 349 | 0.0 | 559 |
| MS.gene25737.t1 | MTR_3g082050 | 86.119 | 353 | 40 | 4 | 9 | 361 | 34 | 377 | 0.0 | 553 |
| MS.gene25737.t1 | MTR_3g082050 | 88.308 | 325 | 30 | 3 | 37 | 361 | 56 | 372 | 0.0 | 544 |
| MS.gene25737.t1 | MTR_3g081690 | 85.088 | 342 | 39 | 4 | 1 | 342 | 1 | 330 | 0.0 | 520 |
| MS.gene25737.t1 | MTR_3g081690 | 87.908 | 306 | 29 | 3 | 37 | 342 | 56 | 353 | 3.19e-180 | 504 |
| MS.gene25737.t1 | MTR_2g064310 | 56.983 | 358 | 143 | 5 | 7 | 361 | 9 | 358 | 1.35e-140 | 403 |
| MS.gene25737.t1 | MTR_3g081690 | 80.769 | 234 | 34 | 4 | 112 | 342 | 14 | 239 | 1.51e-113 | 330 |
| MS.gene25737.t1 | MTR_6g007687 | 49.573 | 351 | 150 | 5 | 15 | 358 | 14 | 344 | 1.86e-110 | 326 |
| MS.gene25737.t1 | MTR_8g105030 | 48.870 | 354 | 162 | 4 | 6 | 355 | 9 | 347 | 6.58e-110 | 327 |
| MS.gene25737.t1 | MTR_4g083570 | 49.716 | 352 | 164 | 4 | 11 | 361 | 11 | 350 | 2.16e-109 | 323 |
| MS.gene25737.t1 | MTR_3g104400 | 47.645 | 361 | 161 | 4 | 28 | 361 | 6 | 365 | 7.44e-103 | 308 |
| MS.gene25737.t1 | MTR_3g081690 | 79.907 | 214 | 28 | 4 | 146 | 359 | 7 | 205 | 3.47e-97 | 287 |
| MS.gene25737.t1 | MTR_3g081690 | 84.772 | 197 | 22 | 3 | 146 | 342 | 29 | 217 | 5.78e-97 | 288 |
| MS.gene25737.t1 | MTR_1g016120 | 45.730 | 363 | 170 | 5 | 26 | 361 | 12 | 374 | 9.29e-97 | 292 |
| MS.gene25737.t1 | MTR_5g071990 | 39.884 | 346 | 172 | 7 | 24 | 361 | 1 | 318 | 1.27e-74 | 234 |
| MS.gene25737.t1 | MTR_3g081630 | 69.231 | 65 | 9 | 2 | 77 | 132 | 20 | 82 | 1.51e-21 | 89.7 |
| MS.gene25737.t1 | MTR_4g006710 | 42.045 | 88 | 50 | 1 | 37 | 124 | 26 | 112 | 1.91e-14 | 69.3 |
| MS.gene25737.t1 | MTR_3g073950 | 30.625 | 160 | 50 | 5 | 1 | 160 | 1 | 99 | 5.83e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25737.t1 | AT3G12750 | 56.125 | 351 | 138 | 5 | 14 | 361 | 18 | 355 | 1.37e-133 | 385 |
| MS.gene25737.t1 | AT1G05300 | 55.457 | 339 | 141 | 5 | 26 | 361 | 29 | 360 | 2.61e-129 | 375 |
| MS.gene25737.t1 | AT2G32270 | 54.030 | 335 | 124 | 2 | 27 | 361 | 35 | 339 | 1.43e-122 | 357 |
| MS.gene25737.t1 | AT1G31260 | 51.335 | 337 | 157 | 4 | 27 | 361 | 33 | 364 | 2.14e-112 | 332 |
| MS.gene25737.t1 | AT5G62160 | 50.140 | 357 | 155 | 8 | 14 | 361 | 13 | 355 | 7.21e-110 | 325 |
| MS.gene25737.t1 | AT2G04032 | 46.866 | 335 | 169 | 2 | 30 | 361 | 37 | 365 | 3.76e-105 | 313 |
| MS.gene25737.t1 | AT4G19690 | 45.556 | 360 | 163 | 4 | 11 | 361 | 12 | 347 | 8.12e-103 | 307 |
| MS.gene25737.t1 | AT4G19680 | 45.251 | 358 | 177 | 6 | 10 | 361 | 6 | 350 | 7.53e-97 | 292 |
| MS.gene25737.t1 | AT1G10970 | 45.628 | 366 | 166 | 5 | 28 | 361 | 10 | 374 | 6.78e-96 | 290 |
| MS.gene25737.t1 | AT1G10970 | 45.628 | 366 | 166 | 5 | 28 | 361 | 10 | 374 | 6.78e-96 | 290 |
| MS.gene25737.t1 | AT1G60960 | 41.562 | 397 | 181 | 4 | 16 | 361 | 29 | 425 | 5.36e-93 | 285 |
| MS.gene25737.t1 | AT1G60960 | 41.562 | 397 | 181 | 4 | 16 | 361 | 19 | 415 | 6.47e-93 | 284 |
| MS.gene25737.t1 | AT4G33020 | 39.730 | 370 | 183 | 4 | 29 | 361 | 25 | 391 | 1.33e-81 | 254 |
| MS.gene25737.t1 | AT1G05300 | 51.230 | 244 | 109 | 5 | 26 | 266 | 29 | 265 | 1.89e-76 | 237 |
| MS.gene25737.t1 | AT4G33020 | 38.905 | 347 | 174 | 3 | 50 | 361 | 1 | 344 | 1.36e-74 | 234 |
| MS.gene25737.t1 | AT2G30080 | 41.617 | 334 | 176 | 6 | 37 | 361 | 18 | 341 | 1.83e-74 | 234 |
| MS.gene25737.t1 | AT4G19680 | 42.857 | 259 | 129 | 6 | 10 | 262 | 6 | 251 | 8.97e-60 | 194 |
| MS.gene25737.t1 | AT4G19690 | 35.238 | 210 | 103 | 4 | 11 | 211 | 12 | 197 | 2.03e-33 | 123 |
| MS.gene25737.t1 | AT1G60960 | 39.355 | 155 | 89 | 1 | 16 | 165 | 29 | 183 | 4.13e-28 | 112 |
Find 74 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAATCGTTATTCTAAA+AGG | 0.149094 | 3.2:+71399383 | MS.gene25737:CDS |
| TCTTACTTCACCTTGTTTAA+AGG | 0.201042 | 3.2:+71399267 | MS.gene25737:CDS |
| TACAACCAGCTCCTAATAAA+AGG | 0.216157 | 3.2:-71400708 | None:intergenic |
| GTAGGAATTGGAATTGGTTT+AGG | 0.227156 | 3.2:+71400511 | MS.gene25737:CDS |
| TCATTATAGGTGTTGGAGTT+AGG | 0.272478 | 3.2:+71399731 | MS.gene25737:intron |
| AGCTGGTATCTTAATCTATA+TGG | 0.297254 | 3.2:+71400603 | MS.gene25737:CDS |
| CATCAGAACTTCTTCGTCAT+AGG | 0.305262 | 3.2:+71399545 | MS.gene25737:CDS |
| GGTGTTTGTATCCCACTTCT+TGG | 0.306746 | 3.2:+71399127 | MS.gene25737:CDS |
| AGCTTCCTTCTCCACATCTA+AGG | 0.307263 | 3.2:-71399443 | None:intergenic |
| TAGGAATTGGAATTGGTTTA+GGG | 0.309747 | 3.2:+71400512 | MS.gene25737:CDS |
| ATTGTCCACTCTGTTATAAT+AGG | 0.310250 | 3.2:+71399758 | MS.gene25737:CDS |
| TGCAGCTACAAGCGGCCTTA+TGG | 0.335829 | 3.2:-71399813 | None:intergenic |
| TTGACTACTCCAGTAGGAAT+TGG | 0.341385 | 3.2:+71400499 | MS.gene25737:CDS |
| TACAAACTCTTAAGCCCATT+TGG | 0.351668 | 3.2:-71400743 | None:intergenic |
| TTGTTTAAAGGAACATCCTT+GGG | 0.364281 | 3.2:+71399279 | MS.gene25737:CDS |
| CATTATAGGTGTTGGAGTTA+GGG | 0.366275 | 3.2:+71399732 | MS.gene25737:intron |
| GTATGTCTCTTCTAGCCAAA+TGG | 0.386544 | 3.2:+71400728 | MS.gene25737:CDS |
| CCTTCAACAATAAGTGCGTT+TGG | 0.386749 | 3.2:-71400562 | None:intergenic |
| GTGGCTATGTGCACTGCTAT+GGG | 0.406127 | 3.2:+71399325 | MS.gene25737:CDS |
| TGTGGCTATGTGCACTGCTA+TGG | 0.422472 | 3.2:+71399324 | MS.gene25737:CDS |
| TCAGAATCGTTATTCTAAAA+GGG | 0.425996 | 3.2:+71399384 | MS.gene25737:CDS |
| CCAAACGCACTTATTGTTGA+AGG | 0.427454 | 3.2:+71400562 | MS.gene25737:CDS |
| TATGTCTCTTCTAGCCAAAT+GGG | 0.432359 | 3.2:+71400729 | MS.gene25737:CDS |
| ATCTTTAATGCAGCTTCAGC+TGG | 0.437614 | 3.2:+71400586 | MS.gene25737:CDS |
| AAGAGTGGTAAACTTCGATT+AGG | 0.445141 | 3.2:+71400673 | MS.gene25737:CDS |
| CACTGCTATGGGGTCTCTCA+TGG | 0.447113 | 3.2:+71399336 | MS.gene25737:CDS |
| ACTCCAGTAGGAATTGGAAT+TGG | 0.447205 | 3.2:+71400505 | MS.gene25737:CDS |
| AAACCAATTCCAATTCCTAC+TGG | 0.448336 | 3.2:-71400508 | None:intergenic |
| GAGTCTATCAATTACAATCA+TGG | 0.449026 | 3.2:+71400462 | MS.gene25737:CDS |
| CTTGTTTAAAGGAACATCCT+TGG | 0.468655 | 3.2:+71399278 | MS.gene25737:CDS |
| GTAAGATTCTCAAAAGCATC+AGG | 0.471092 | 3.2:-71399250 | None:intergenic |
| ATCAGAACTTCTTCGTCATA+GGG | 0.471833 | 3.2:+71399546 | MS.gene25737:CDS |
| ACAACCAGCTCCTAATAAAA+GGG | 0.495697 | 3.2:-71400707 | None:intergenic |
| CTATTAGAGTCGGGAATATG+AGG | 0.501530 | 3.2:-71399000 | None:intergenic |
| AGGAAGCACATGAATGAAAC+CGG | 0.505115 | 3.2:-71399230 | None:intergenic |
| AGTCTATCAATTACAATCAT+GGG | 0.517712 | 3.2:+71400463 | MS.gene25737:CDS |
| CAGAGAGTCCTAAAACCATA+AGG | 0.533501 | 3.2:+71399798 | MS.gene25737:CDS |
| TCGTCATAGGGTCATATCAC+AGG | 0.536885 | 3.2:+71399558 | MS.gene25737:CDS |
| TGACGAAGAAGTTCTGATGA+AGG | 0.540078 | 3.2:-71399541 | None:intergenic |
| ATAGCCACAAAACCTGTGAA+TGG | 0.549290 | 3.2:-71399310 | None:intergenic |
| CGCAGAATGCACGTGTGATG+AGG | 0.554438 | 3.2:+71399024 | MS.gene25737:CDS |
| GGTATGACTTTGCCAAGAAG+TGG | 0.555532 | 3.2:-71399139 | None:intergenic |
| CATTCTGCGGCTATTAGAGT+CGG | 0.562897 | 3.2:-71399010 | None:intergenic |
| GCCGCTGTGATATTATCCAC+CGG | 0.565820 | 3.2:+71399211 | MS.gene25737:CDS |
| TAATATCACAGCGGCAGCAA+AGG | 0.569459 | 3.2:-71399203 | None:intergenic |
| CAAGGATGTTCCTTTAAACA+AGG | 0.576442 | 3.2:-71399277 | None:intergenic |
| AAGAAGTTCTGATGAAGGAT+CGG | 0.581698 | 3.2:-71399536 | None:intergenic |
| ACTTGGAAGTTGTATAACTC+AGG | 0.582307 | 3.2:+71399868 | MS.gene25737:CDS |
| ATGAAGGATCGGAAGAAACA+TGG | 0.586911 | 3.2:-71399525 | None:intergenic |
| ATTCTGCGGCTATTAGAGTC+GGG | 0.588616 | 3.2:-71399009 | None:intergenic |
| GCATCCCATGGTCATGCACA+TGG | 0.588921 | 3.2:+71399502 | MS.gene25737:CDS |
| CTCATCACACGTGCATTCTG+CGG | 0.595994 | 3.2:-71399023 | None:intergenic |
| GGCAACCTTAGATGTGGAGA+AGG | 0.597643 | 3.2:+71399438 | MS.gene25737:CDS |
| TTTGCTTTGACTACTCCAGT+AGG | 0.602695 | 3.2:+71400493 | MS.gene25737:CDS |
| TGGCTATGTGCACTGCTATG+GGG | 0.605907 | 3.2:+71399326 | MS.gene25737:CDS |
| TGCACGTGTGATGAGGAAGA+TGG | 0.605995 | 3.2:+71399031 | MS.gene25737:CDS |
| GTTATAATAGGAATCTCTCT+CGG | 0.610596 | 3.2:+71399770 | MS.gene25737:CDS |
| TCATGAGGCAACCTTAGATG+TGG | 0.613366 | 3.2:+71399432 | MS.gene25737:CDS |
| AAGGGCATCAACGCTGACAC+AGG | 0.617183 | 3.2:+71399402 | MS.gene25737:CDS |
| GTTCATACTCATGCATCCCA+TGG | 0.618746 | 3.2:+71399490 | MS.gene25737:CDS |
| CATGGCCATGTGCATGACCA+TGG | 0.622464 | 3.2:-71399507 | None:intergenic |
| GTATGACTTTGCCAAGAAGT+GGG | 0.636419 | 3.2:-71399138 | None:intergenic |
| ATGGCCATGTGCATGACCAT+GGG | 0.642171 | 3.2:-71399506 | None:intergenic |
| ATAACGATTCTGAAAATAAG+CGG | 0.644739 | 3.2:-71399374 | None:intergenic |
| TGTTTAAAGGAACATCCTTG+GGG | 0.649652 | 3.2:+71399280 | MS.gene25737:CDS |
| AATCCAAGGATGCAAAAGAG+TGG | 0.658857 | 3.2:+71400658 | MS.gene25737:CDS |
| AAGGAAGCTGTAGAGCAACA+AGG | 0.660104 | 3.2:+71399457 | MS.gene25737:CDS |
| ACGATTCTGAAAATAAGCGG+TGG | 0.666807 | 3.2:-71399371 | None:intergenic |
| GTGAATGGAAAATCACCCCA+AGG | 0.672947 | 3.2:-71399295 | None:intergenic |
| AAGGTCAATGCAGCTACAAG+CGG | 0.676887 | 3.2:-71399821 | None:intergenic |
| AAGCACATGAATGAAACCGG+TGG | 0.696675 | 3.2:-71399227 | None:intergenic |
| GACACAGGTTAAGAGTCATG+AGG | 0.716963 | 3.2:+71399417 | MS.gene25737:CDS |
| AGATTCCTATTATAACAGAG+TGG | 0.719648 | 3.2:-71399763 | None:intergenic |
| ACCGGTGGATAATATCACAG+CGG | 0.776957 | 3.2:-71399212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTTATGAGTGTAAAT+GGG | + | chr3.2:71399945-71399964 | MS.gene25737:intron | 15.0% |
| !!! | ATGAAAAATATATCTTTTTC+AGG | - | chr3.2:71399175-71399194 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGATTTCATTAT+AGG | + | chr3.2:71399718-71399737 | MS.gene25737:intron | 15.0% |
| !!! | TGAAAAATATATCTTTTTCA+GGG | - | chr3.2:71399174-71399193 | None:intergenic | 15.0% |
| !!! | TGAACTTTTTTATTTATGTA+TGG | + | chr3.2:71400347-71400366 | MS.gene25737:intron | 15.0% |
| !!! | TTCTTGTTTAAATTCAATTA+AGG | - | chr3.2:71400386-71400405 | None:intergenic | 15.0% |
| !! | AAATCATATTCCATAATTCA+TGG | - | chr3.2:71399911-71399930 | None:intergenic | 20.0% |
| !! | CTAATATTTATGAGTGTAAA+TGG | + | chr3.2:71399944-71399963 | MS.gene25737:intron | 20.0% |
| !! | TATTTCAGTTTATATGACTT+TGG | - | chr3.2:71400293-71400312 | None:intergenic | 20.0% |
| !! | TTAAACAAGAAAACAATCAT+GGG | + | chr3.2:71400395-71400414 | MS.gene25737:intron | 20.0% |
| !! | TTTAAACAAGAAAACAATCA+TGG | + | chr3.2:71400394-71400413 | MS.gene25737:intron | 20.0% |
| ! | AGTCTATCAATTACAATCAT+GGG | + | chr3.2:71400463-71400482 | MS.gene25737:CDS | 25.0% |
| ! | ATATTCCATAATTCATGGAT+AGG | - | chr3.2:71399906-71399925 | None:intergenic | 25.0% |
| ! | CATAGCTATAGAAACTATAA+GGG | - | chr3.2:71400222-71400241 | None:intergenic | 25.0% |
| ! | GAAACTTCATAATGAAATCA+AGG | - | chr3.2:71400036-71400055 | None:intergenic | 25.0% |
| ! | TAATACCTATCCATGAATTA+TGG | + | chr3.2:71399898-71399917 | MS.gene25737:intron | 25.0% |
| ! | TGAAGTTTCAAATACATGTA+CGG | + | chr3.2:71400047-71400066 | MS.gene25737:intron | 25.0% |
| ! | TTCAGAATCGTTATTCTAAA+AGG | + | chr3.2:71399383-71399402 | MS.gene25737:CDS | 25.0% |
| ! | TTTGTAACCAATGTATTTGT+TGG | + | chr3.2:71400155-71400174 | MS.gene25737:intron | 25.0% |
| !! | ATAACGATTCTGAAAATAAG+CGG | - | chr3.2:71399377-71399396 | None:intergenic | 25.0% |
| !! | TCAGAATCGTTATTCTAAAA+GGG | + | chr3.2:71399384-71399403 | MS.gene25737:CDS | 25.0% |
| !! | TTGGCTAATTTTGAACATTT+AGG | - | chr3.2:71400196-71400215 | None:intergenic | 25.0% |
| !! | TTTGATTTCATTATAGGTGT+TGG | + | chr3.2:71399724-71399743 | MS.gene25737:intron | 25.0% |
| !!! | ACCTTTCATCAATTTTTTGA+GGG | + | chr3.2:71399839-71399858 | MS.gene25737:CDS | 25.0% |
| AGATTCCTATTATAACAGAG+TGG | - | chr3.2:71399766-71399785 | None:intergenic | 30.0% | |
| AGCTGGTATCTTAATCTATA+TGG | + | chr3.2:71400603-71400622 | MS.gene25737:CDS | 30.0% | |
| ATAGAAACTATAAGGGAGTT+TGG | - | chr3.2:71400215-71400234 | None:intergenic | 30.0% | |
| ATGAAATGATACTATGAGTC+AGG | + | chr3.2:71399997-71400016 | MS.gene25737:intron | 30.0% | |
| ATTGTCCACTCTGTTATAAT+AGG | + | chr3.2:71399758-71399777 | MS.gene25737:CDS | 30.0% | |
| GAACATTTAGGAACAAACAA+GGG | - | chr3.2:71400184-71400203 | None:intergenic | 30.0% | |
| GAGTCTATCAATTACAATCA+TGG | + | chr3.2:71400462-71400481 | MS.gene25737:CDS | 30.0% | |
| GCATAGCTATAGAAACTATA+AGG | - | chr3.2:71400223-71400242 | None:intergenic | 30.0% | |
| GTTATAATAGGAATCTCTCT+CGG | + | chr3.2:71399770-71399789 | MS.gene25737:CDS | 30.0% | |
| GTTCAACTAACATAACTTCT+AGG | - | chr3.2:71400332-71400351 | None:intergenic | 30.0% | |
| TGAACATTTAGGAACAAACA+AGG | - | chr3.2:71400185-71400204 | None:intergenic | 30.0% | |
| TTGTTTAAAGGAACATCCTT+GGG | + | chr3.2:71399279-71399298 | MS.gene25737:CDS | 30.0% | |
| ! | TAGGAATTGGAATTGGTTTA+GGG | + | chr3.2:71400512-71400531 | MS.gene25737:CDS | 30.0% |
| ! | TCTTACTTCACCTTGTTTAA+AGG | + | chr3.2:71399267-71399286 | MS.gene25737:CDS | 30.0% |
| ! | TGCAATCTATCCCTTTTATT+AGG | + | chr3.2:71400697-71400716 | MS.gene25737:CDS | 30.0% |
| !!! | ATTTTAGTTGCAAGTGCAAT+TGG | + | chr3.2:71399106-71399125 | MS.gene25737:CDS | 30.0% |
| !!! | GACCTTTCATCAATTTTTTG+AGG | + | chr3.2:71399838-71399857 | MS.gene25737:CDS | 30.0% |
| AAACCAATTCCAATTCCTAC+TGG | - | chr3.2:71400511-71400530 | None:intergenic | 35.0% | |
| AAGAGTGGTAAACTTCGATT+AGG | + | chr3.2:71400673-71400692 | MS.gene25737:CDS | 35.0% | |
| AATGGGACCATATGTTTGTT+TGG | + | chr3.2:71399962-71399981 | MS.gene25737:intron | 35.0% | |
| ACAACCAGCTCCTAATAAAA+GGG | - | chr3.2:71400710-71400729 | None:intergenic | 35.0% | |
| ACACCAACCAAACAAACATA+TGG | - | chr3.2:71399972-71399991 | None:intergenic | 35.0% | |
| ACTTGGAAGTTGTATAACTC+AGG | + | chr3.2:71399868-71399887 | MS.gene25737:CDS | 35.0% | |
| ATCAGAACTTCTTCGTCATA+GGG | + | chr3.2:71399546-71399565 | MS.gene25737:CDS | 35.0% | |
| CAAGGATGTTCCTTTAAACA+AGG | - | chr3.2:71399280-71399299 | None:intergenic | 35.0% | |
| CTTGTTTAAAGGAACATCCT+TGG | + | chr3.2:71399278-71399297 | MS.gene25737:CDS | 35.0% | |
| GCCCTCAAAAAATTGATGAA+AGG | - | chr3.2:71399843-71399862 | None:intergenic | 35.0% | |
| GTTTCAAATACATGTACGGT+TGG | + | chr3.2:71400051-71400070 | MS.gene25737:intron | 35.0% | |
| TACAACCAGCTCCTAATAAA+AGG | - | chr3.2:71400711-71400730 | None:intergenic | 35.0% | |
| TAGCTATGCTAATACTCAAG+AGG | + | chr3.2:71400234-71400253 | MS.gene25737:intron | 35.0% | |
| TATGTCTCTTCTAGCCAAAT+GGG | + | chr3.2:71400729-71400748 | MS.gene25737:CDS | 35.0% | |
| TGTTTAAAGGAACATCCTTG+GGG | + | chr3.2:71399280-71399299 | MS.gene25737:CDS | 35.0% | |
| ! | AAGAAGTTCTGATGAAGGAT+CGG | - | chr3.2:71399539-71399558 | None:intergenic | 35.0% |
| ! | GTAGGAATTGGAATTGGTTT+AGG | + | chr3.2:71400511-71400530 | MS.gene25737:CDS | 35.0% |
| ! | TATTTTGTAACGTAGGGCTT+TGG | - | chr3.2:71399071-71399090 | None:intergenic | 35.0% |
| ! | TTTTCCATTCACAGGTTTTG+TGG | + | chr3.2:71399306-71399325 | MS.gene25737:CDS | 35.0% |
| !! | CAGCTGATTTTATGAATCCA+AGG | + | chr3.2:71400644-71400663 | MS.gene25737:CDS | 35.0% |
| !! | CATTATAGGTGTTGGAGTTA+GGG | + | chr3.2:71399732-71399751 | MS.gene25737:intron | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | - | chr3.2:71399253-71399272 | None:intergenic | 35.0% |
| !! | TCATTATAGGTGTTGGAGTT+AGG | + | chr3.2:71399731-71399750 | MS.gene25737:intron | 35.0% |
| !!! | AAGCTGCTATTTTGTAACGT+AGG | - | chr3.2:71399078-71399097 | None:intergenic | 35.0% |
| !!! | AGCTGCTATTTTGTAACGTA+GGG | - | chr3.2:71399077-71399096 | None:intergenic | 35.0% |
| !!! | CATCAATTTTTTGAGGGCAT+GGG | + | chr3.2:71399845-71399864 | MS.gene25737:CDS | 35.0% |
| !!! | TCATCAATTTTTTGAGGGCA+TGG | + | chr3.2:71399844-71399863 | MS.gene25737:CDS | 35.0% |
| AATCCAAGGATGCAAAAGAG+TGG | + | chr3.2:71400658-71400677 | MS.gene25737:CDS | 40.0% | |
| ACTCCAGTAGGAATTGGAAT+TGG | + | chr3.2:71400505-71400524 | MS.gene25737:CDS | 40.0% | |
| ATAGCCACAAAACCTGTGAA+TGG | - | chr3.2:71399313-71399332 | None:intergenic | 40.0% | |
| ATCTTTAATGCAGCTTCAGC+TGG | + | chr3.2:71400586-71400605 | MS.gene25737:CDS | 40.0% | |
| ATGAAGGATCGGAAGAAACA+TGG | - | chr3.2:71399528-71399547 | None:intergenic | 40.0% | |
| CAGAGAGTCCTAAAACCATA+AGG | + | chr3.2:71399798-71399817 | MS.gene25737:CDS | 40.0% | |
| CATCAGAACTTCTTCGTCAT+AGG | + | chr3.2:71399545-71399564 | MS.gene25737:CDS | 40.0% | |
| CCAAACGCACTTATTGTTGA+AGG | + | chr3.2:71400562-71400581 | MS.gene25737:CDS | 40.0% | |
| CCTTCAACAATAAGTGCGTT+TGG | - | chr3.2:71400565-71400584 | None:intergenic | 40.0% | |
| CTATTAGAGTCGGGAATATG+AGG | - | chr3.2:71399003-71399022 | None:intergenic | 40.0% | |
| CTCTTGAAATTTGCCTGCAA+TGG | - | chr3.2:71400445-71400464 | None:intergenic | 40.0% | |
| GGACCATATGTTTGTTTGGT+TGG | + | chr3.2:71399966-71399985 | MS.gene25737:intron | 40.0% | |
| GTATGACTTTGCCAAGAAGT+GGG | - | chr3.2:71399141-71399160 | None:intergenic | 40.0% | |
| GTATGTCTCTTCTAGCCAAA+TGG | + | chr3.2:71400728-71400747 | MS.gene25737:CDS | 40.0% | |
| TTGACTACTCCAGTAGGAAT+TGG | + | chr3.2:71400499-71400518 | MS.gene25737:CDS | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | + | chr3.2:71400493-71400512 | MS.gene25737:CDS | 40.0% | |
| ! | ACGATTCTGAAAATAAGCGG+TGG | - | chr3.2:71399374-71399393 | None:intergenic | 40.0% |
| ! | AGGAAGCACATGAATGAAAC+CGG | - | chr3.2:71399233-71399252 | None:intergenic | 40.0% |
| ! | AGGGCATCCAACAAATACAT+TGG | - | chr3.2:71400165-71400184 | None:intergenic | 40.0% |
| ! | ATTGAAAGTGCAACCATTGC+AGG | + | chr3.2:71400429-71400448 | MS.gene25737:intron | 40.0% |
| ! | CTATCCCTTTTATTAGGAGC+TGG | + | chr3.2:71400703-71400722 | MS.gene25737:CDS | 40.0% |
| ! | TGACGAAGAAGTTCTGATGA+AGG | - | chr3.2:71399544-71399563 | None:intergenic | 40.0% |
| ! | TTACCACTCTTTTGCATCCT+TGG | - | chr3.2:71400664-71400683 | None:intergenic | 40.0% |
| !!! | ATCTTTTTCAGGGCTTAACG+CGG | - | chr3.2:71399164-71399183 | None:intergenic | 40.0% |
| AAGCACATGAATGAAACCGG+TGG | - | chr3.2:71399230-71399249 | None:intergenic | 45.0% | |
| AAGGAAGCTGTAGAGCAACA+AGG | + | chr3.2:71399457-71399476 | MS.gene25737:CDS | 45.0% | |
| AAGGTCAATGCAGCTACAAG+CGG | - | chr3.2:71399824-71399843 | None:intergenic | 45.0% | |
| ACCGGTGGATAATATCACAG+CGG | - | chr3.2:71399215-71399234 | None:intergenic | 45.0% | |
| AGCTTCCTTCTCCACATCTA+AGG | - | chr3.2:71399446-71399465 | None:intergenic | 45.0% | |
| ATTCTGCGGCTATTAGAGTC+GGG | - | chr3.2:71399012-71399031 | None:intergenic | 45.0% | |
| CATTCTGCGGCTATTAGAGT+CGG | - | chr3.2:71399013-71399032 | None:intergenic | 45.0% | |
| GACACAGGTTAAGAGTCATG+AGG | + | chr3.2:71399417-71399436 | MS.gene25737:CDS | 45.0% | |
| GGTATGACTTTGCCAAGAAG+TGG | - | chr3.2:71399142-71399161 | None:intergenic | 45.0% | |
| GGTGTTTGTATCCCACTTCT+TGG | + | chr3.2:71399127-71399146 | MS.gene25737:CDS | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | - | chr3.2:71399298-71399317 | None:intergenic | 45.0% | |
| GTTCATACTCATGCATCCCA+TGG | + | chr3.2:71399490-71399509 | MS.gene25737:CDS | 45.0% | |
| TAATATCACAGCGGCAGCAA+AGG | - | chr3.2:71399206-71399225 | None:intergenic | 45.0% | |
| TCATGAGGCAACCTTAGATG+TGG | + | chr3.2:71399432-71399451 | MS.gene25737:CDS | 45.0% | |
| TCGTCATAGGGTCATATCAC+AGG | + | chr3.2:71399558-71399577 | MS.gene25737:CDS | 45.0% | |
| ! | TGGGGTGATTTTCCATTCAC+AGG | + | chr3.2:71399298-71399317 | MS.gene25737:CDS | 45.0% |
| !! | ACAAGCGGCCTTATGGTTTT+AGG | - | chr3.2:71399809-71399828 | None:intergenic | 45.0% |
| !!! | TCTTTTTCAGGGCTTAACGC+GGG | - | chr3.2:71399163-71399182 | None:intergenic | 45.0% |
| !!! | TTTTTTGAGGGCATGGGACT+TGG | + | chr3.2:71399851-71399870 | MS.gene25737:CDS | 45.0% |
| !!! | AATATGATTTAATTTTTATA+AGG | + | chr3.2:71399921-71399940 | MS.gene25737:intron | 5.0% |
| ATGGCCATGTGCATGACCAT+GGG | - | chr3.2:71399509-71399528 | None:intergenic | 50.0% | |
| CTCATCACACGTGCATTCTG+CGG | - | chr3.2:71399026-71399045 | None:intergenic | 50.0% | |
| GCCGCTGTGATATTATCCAC+CGG | + | chr3.2:71399211-71399230 | MS.gene25737:CDS | 50.0% | |
| GGCAACCTTAGATGTGGAGA+AGG | + | chr3.2:71399438-71399457 | MS.gene25737:CDS | 50.0% | |
| GTGGCTATGTGCACTGCTAT+GGG | + | chr3.2:71399325-71399344 | MS.gene25737:CDS | 50.0% | |
| TGCACGTGTGATGAGGAAGA+TGG | + | chr3.2:71399031-71399050 | MS.gene25737:CDS | 50.0% | |
| TGGCTATGTGCACTGCTATG+GGG | + | chr3.2:71399326-71399345 | MS.gene25737:CDS | 50.0% | |
| TGTGGCTATGTGCACTGCTA+TGG | + | chr3.2:71399324-71399343 | MS.gene25737:CDS | 50.0% | |
| CACTGCTATGGGGTCTCTCA+TGG | + | chr3.2:71399336-71399355 | MS.gene25737:CDS | 55.0% | |
| CATGGCCATGTGCATGACCA+TGG | - | chr3.2:71399510-71399529 | None:intergenic | 55.0% | |
| CGCAGAATGCACGTGTGATG+AGG | + | chr3.2:71399024-71399043 | MS.gene25737:CDS | 55.0% | |
| GCATCCCATGGTCATGCACA+TGG | + | chr3.2:71399502-71399521 | MS.gene25737:CDS | 55.0% | |
| TGCAGCTACAAGCGGCCTTA+TGG | - | chr3.2:71399816-71399835 | None:intergenic | 55.0% | |
| !! | AAGGGCATCAACGCTGACAC+AGG | + | chr3.2:71399402-71399421 | MS.gene25737:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 71398950 | 71400756 | 71398950 | ID=MS.gene25737 |
| chr3.2 | mRNA | 71398950 | 71400756 | 71398950 | ID=MS.gene25737.t1;Parent=MS.gene25737 |
| chr3.2 | exon | 71398950 | 71399579 | 71398950 | ID=MS.gene25737.t1.exon1;Parent=MS.gene25737.t1 |
| chr3.2 | CDS | 71398950 | 71399579 | 71398950 | ID=cds.MS.gene25737.t1;Parent=MS.gene25737.t1 |
| chr3.2 | exon | 71399740 | 71399889 | 71399740 | ID=MS.gene25737.t1.exon2;Parent=MS.gene25737.t1 |
| chr3.2 | CDS | 71399740 | 71399889 | 71399740 | ID=cds.MS.gene25737.t1;Parent=MS.gene25737.t1 |
| chr3.2 | exon | 71400451 | 71400756 | 71400451 | ID=MS.gene25737.t1.exon3;Parent=MS.gene25737.t1 |
| chr3.2 | CDS | 71400451 | 71400756 | 71400451 | ID=cds.MS.gene25737.t1;Parent=MS.gene25737.t1 |
| Gene Sequence |
| Protein sequence |
