Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26108.t1 | XP_003616296.2 | 93.7 | 916 | 29 | 3 | 1 | 889 | 1 | 914 | 0.00E+00 | 1596.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26108.t1 | Q8W489 | 46.7 | 916 | 371 | 18 | 29 | 889 | 12 | 865 | 2.6e-198 | 693.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26108.t1 | G7K1Q6 | 93.7 | 916 | 29 | 3 | 1 | 889 | 1 | 914 | 0.0e+00 | 1596.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene26108 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene26108 | 0.801525 | 8.64E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene26108 | 0.82272 | 2.04E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene26108 | 0.871011 | 9.46E-67 | -1.69E-46 |
| MS.gene053836 | MS.gene26108 | 0.806413 | 8.33E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene26108 | 0.816734 | 4.75E-52 | -1.69E-46 |
| MS.gene054011 | MS.gene26108 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene054012 | MS.gene26108 | 0.822621 | 2.15E-53 | -1.69E-46 |
| MS.gene054013 | MS.gene26108 | 0.816909 | 4.34E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene26108 | 0.822339 | 2.50E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene26108 | 0.838455 | 2.85E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene26108 | 0.807543 | 4.80E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene26108 | 0.832313 | 1.01E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26108 | MS.gene070758 | PPI |
| MS.gene070761 | MS.gene26108 | PPI |
| MS.gene26108 | MS.gene045436 | PPI |
| MS.gene070760 | MS.gene26108 | PPI |
| MS.gene006731 | MS.gene26108 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26108.t1 | MTR_5g078360 | 94.105 | 916 | 25 | 3 | 1 | 889 | 1 | 914 | 0.0 | 1759 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26108.t1 | AT5G16630 | 48.634 | 915 | 355 | 20 | 29 | 889 | 12 | 865 | 0.0 | 715 |
| MS.gene26108.t1 | AT5G16630 | 48.634 | 915 | 355 | 20 | 29 | 889 | 12 | 865 | 0.0 | 715 |
| MS.gene26108.t1 | AT5G16630 | 48.030 | 660 | 263 | 15 | 29 | 662 | 12 | 617 | 2.21e-168 | 504 |
Find 184 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATATTAAACTTTA+TGG | 0.039387 | 5.4:+56729938 | MS.gene26108:CDS |
| TCATCCAAAGGGTCCGGTTC+TGG | 0.177286 | 5.4:+56729620 | MS.gene26108:CDS |
| TTGTACTTTCTGAGGCTTAA+TGG | 0.198148 | 5.4:-56729876 | None:intergenic |
| TTTCAGGTTTGTGTCCATTT+TGG | 0.206215 | 5.4:+56727403 | MS.gene26108:intron |
| CACAGCACCCTTGGATATTT+CGG | 0.273593 | 5.4:-56723678 | None:intergenic |
| TTCTCGGAGCCATCTCTCTT+TGG | 0.290930 | 5.4:-56729697 | None:intergenic |
| TTGTGACGATCCTCTTATTC+AGG | 0.293753 | 5.4:+56724361 | MS.gene26108:CDS |
| CGATGGGTACATTGATAAAA+AGG | 0.305010 | 5.4:+56724041 | MS.gene26108:CDS |
| CATCCAAAGGGTCCGGTTCT+GGG | 0.310984 | 5.4:+56729621 | MS.gene26108:CDS |
| GGTTCTTGTAAGGGGATCTT+TGG | 0.314568 | 5.4:+56727473 | MS.gene26108:CDS |
| ACATTCAATTCTATTGTCAT+AGG | 0.319019 | 5.4:-56724117 | None:intergenic |
| AACCATACCCATGAGATTAA+AGG | 0.319564 | 5.4:-56724753 | None:intergenic |
| CAACCAGATTAGACCTTTGC+AGG | 0.321421 | 5.4:-56729747 | None:intergenic |
| AGGAAAATATTAAACTTTAT+GGG | 0.334938 | 5.4:+56729939 | MS.gene26108:CDS |
| CACCAGGTACAGTGCACTTA+AGG | 0.338212 | 5.4:+56730532 | MS.gene26108:CDS |
| TGAAAGAGATGTACCTCTTC+AGG | 0.342280 | 5.4:-56724974 | None:intergenic |
| ACCTTTGCAGGATGTTCATT+GGG | 0.351208 | 5.4:-56729735 | None:intergenic |
| GTTTCACTTGTAGCCCTTCT+CGG | 0.353277 | 5.4:-56729713 | None:intergenic |
| AAACCTGCGGGTCACATCTT+TGG | 0.357932 | 5.4:-56728140 | None:intergenic |
| GAGTTTGAGTCAGTACAAAA+TGG | 0.359241 | 5.4:+56723904 | MS.gene26108:CDS |
| GCTGTGAATTTGATTATTGA+TGG | 0.359932 | 5.4:+56728040 | MS.gene26108:CDS |
| AACTTAGAGTCTGGAGCAAC+TGG | 0.361257 | 5.4:+56729314 | MS.gene26108:CDS |
| AGTAGGATCTCCTTTGTATT+GGG | 0.364537 | 5.4:+56727964 | MS.gene26108:CDS |
| CATTGTAGTAGAAATTCTAT+TGG | 0.365967 | 5.4:+56723976 | MS.gene26108:CDS |
| TGACTGCACTACTGATTCTA+AGG | 0.366300 | 5.4:+56729919 | MS.gene26108:CDS |
| ACGCACTGCACCAAGCAAAA+TGG | 0.366368 | 5.4:+56727616 | MS.gene26108:CDS |
| ACACAAGTCCTAGGGTAAAC+AGG | 0.374218 | 5.4:-56729660 | None:intergenic |
| CGAGCACATCCCGTCTATAA+TGG | 0.375101 | 5.4:+56730636 | MS.gene26108:CDS |
| CCCACCTTGGGTGTTGTGTT+GGG | 0.380410 | 5.4:-56723535 | None:intergenic |
| AACCCCAGAACCGGACCCTT+TGG | 0.385660 | 5.4:-56729624 | None:intergenic |
| TTGTCTATCTGATGGTGTCT+AGG | 0.386306 | 5.4:-56731229 | None:intergenic |
| AAGAAAATTTGACAGGAAAG+TGG | 0.387383 | 5.4:+56728005 | MS.gene26108:CDS |
| GACCTTTGCAGGATGTTCAT+TGG | 0.391697 | 5.4:-56729736 | None:intergenic |
| AAGAGATGAAACATCCAAAA+TGG | 0.394134 | 5.4:-56727417 | None:intergenic |
| AATGGCAAGTGGTTCTTGTA+AGG | 0.396138 | 5.4:+56727463 | MS.gene26108:CDS |
| CTCTATGTCCTTTAATCTCA+TGG | 0.396904 | 5.4:+56724745 | MS.gene26108:CDS |
| TGTCTATCTGATGGTGTCTA+GGG | 0.398884 | 5.4:-56731228 | None:intergenic |
| TTGCTTCTGTAGCACTGATT+TGG | 0.404166 | 5.4:-56729361 | None:intergenic |
| AACTGCTGTAGAAATTAGTT+GGG | 0.405492 | 5.4:-56727930 | None:intergenic |
| CAACTGCTGTAGAAATTAGT+TGG | 0.411925 | 5.4:-56727931 | None:intergenic |
| CTCATAAATTAAAGAGGAAA+GGG | 0.413230 | 5.4:+56727747 | MS.gene26108:CDS |
| GCTCTTTCTGTTACAGCAGT+TGG | 0.420890 | 5.4:+56727800 | MS.gene26108:CDS |
| TTTCTATGACATAAAGTGAA+TGG | 0.424779 | 5.4:-56729572 | None:intergenic |
| AAAGTCACCGCACTTTGCTT+TGG | 0.431564 | 5.4:+56724922 | MS.gene26108:CDS |
| AGCGTGGTCAAGTGGATGTC+TGG | 0.433333 | 5.4:+56730493 | MS.gene26108:CDS |
| AAGTAGGATCTCCTTTGTAT+TGG | 0.433396 | 5.4:+56727963 | MS.gene26108:CDS |
| TCCCACCTTGGGTGTTGTGT+TGG | 0.440095 | 5.4:-56723536 | None:intergenic |
| GCTTTGTGACATTTGATAGC+TGG | 0.440998 | 5.4:-56724710 | None:intergenic |
| CAACTAATTTCTACAGCAGT+TGG | 0.443448 | 5.4:+56727932 | MS.gene26108:CDS |
| AATACTATAATTCTTCTACT+TGG | 0.445825 | 5.4:-56731384 | None:intergenic |
| TAATAGTTAACCTGAATAAG+AGG | 0.447865 | 5.4:-56724371 | None:intergenic |
| AAACTATGTGAAAGCTCTCT+TGG | 0.448992 | 5.4:+56727572 | MS.gene26108:CDS |
| AATCTTCCTCACGCGGTGAA+TGG | 0.449667 | 5.4:+56729983 | MS.gene26108:CDS |
| ATATTAAACTTTATGGGAAG+TGG | 0.454726 | 5.4:+56729945 | MS.gene26108:CDS |
| TGTTTCTTTGCAGACGACTC+AGG | 0.455574 | 5.4:-56724144 | None:intergenic |
| GATGACTCAGATTGGGAAGA+TGG | 0.458697 | 5.4:+56724072 | MS.gene26108:CDS |
| CCTGAACAAAACCCCAGAAC+CGG | 0.463014 | 5.4:-56729633 | None:intergenic |
| ACAGTTTGCACACAAGTCCT+AGG | 0.463689 | 5.4:-56729669 | None:intergenic |
| AAGAACTGGATGACTCAGAT+TGG | 0.467692 | 5.4:+56724064 | MS.gene26108:CDS |
| CTCGTGGAAGATTAATAGAC+AGG | 0.467787 | 5.4:+56724336 | MS.gene26108:CDS |
| TGTCGTGTGTGCTGAGTTCA+AGG | 0.468595 | 5.4:+56730662 | MS.gene26108:CDS |
| TCCTCAATAGAGCTCCTTGT+AGG | 0.472613 | 5.4:-56729404 | None:intergenic |
| AATGGTATCTAAGCAAAAGT+TGG | 0.473113 | 5.4:+56727508 | MS.gene26108:CDS |
| GGGATACTTGCTGAAACGTC+TGG | 0.474922 | 5.4:-56731265 | None:intergenic |
| ATTTGAGATGCAGATGGAAA+TGG | 0.481223 | 5.4:+56727778 | MS.gene26108:CDS |
| AATTCAAAACCAACCATAGC+AGG | 0.481589 | 5.4:-56730603 | None:intergenic |
| AACCTTAAGTGCACTGTACC+TGG | 0.487431 | 5.4:-56730534 | None:intergenic |
| CAGGTCACCCTGTTTACCCT+AGG | 0.488850 | 5.4:+56729652 | MS.gene26108:CDS |
| TGCAGTGAAGAAAATTTGAC+AGG | 0.493635 | 5.4:+56727998 | MS.gene26108:CDS |
| CGAAATATCCAAGGGTGCTG+TGG | 0.498356 | 5.4:+56723679 | MS.gene26108:CDS |
| ACCGCGTGAGGAAGATTCAA+TGG | 0.500697 | 5.4:-56729977 | None:intergenic |
| GTGTCAAATGCCACAATTTG+TGG | 0.503111 | 5.4:+56731184 | MS.gene26108:CDS |
| TTCTAAGAGTAAAGTGGGGT+CGG | 0.504591 | 5.4:+56727826 | MS.gene26108:CDS |
| CCACTGAGAAACTTAGAGTC+TGG | 0.508190 | 5.4:+56729305 | MS.gene26108:CDS |
| TAGTAGAAATTCTATTGGAA+AGG | 0.508427 | 5.4:+56723981 | MS.gene26108:CDS |
| GATTCTGCACCTGCTATGGT+TGG | 0.511076 | 5.4:+56730594 | MS.gene26108:CDS |
| TCAAAATCTTGTACTTTCTG+AGG | 0.514663 | 5.4:-56729884 | None:intergenic |
| ACCTGCTGGTTGGTTGGAAG+AGG | 0.515197 | 5.4:-56729458 | None:intergenic |
| AGAACTGGATGACTCAGATT+GGG | 0.516004 | 5.4:+56724065 | MS.gene26108:CDS |
| ATCCAAAGGGTCCGGTTCTG+GGG | 0.516010 | 5.4:+56729622 | MS.gene26108:CDS |
| GATTGATTCTGCACCTGCTA+TGG | 0.516302 | 5.4:+56730590 | MS.gene26108:CDS |
| GTTTCTTTGCAGACGACTCA+GGG | 0.516323 | 5.4:-56724143 | None:intergenic |
| TGTCAGTTATATGTGATTCG+AGG | 0.516683 | 5.4:-56727721 | None:intergenic |
| AGAGTACGAGAGCTTTGATA+AGG | 0.516887 | 5.4:+56731318 | MS.gene26108:CDS |
| TCCTACAAGGAGCTCTATTG+AGG | 0.517013 | 5.4:+56729403 | MS.gene26108:CDS |
| GAGCTTTAAATCTTACAGCC+AGG | 0.517661 | 5.4:+56727032 | MS.gene26108:CDS |
| GCCTCTTCCAACCAACCAGC+AGG | 0.519338 | 5.4:+56729457 | MS.gene26108:CDS |
| ACAAATCTCATAAATTAAAG+AGG | 0.519546 | 5.4:+56727741 | MS.gene26108:CDS |
| CATCTATTGTAACTCGTCAA+AGG | 0.520989 | 5.4:+56731092 | MS.gene26108:CDS |
| TTACAAGAACCACTTGCCAT+TGG | 0.523955 | 5.4:-56727461 | None:intergenic |
| TCTCATAAATTAAAGAGGAA+AGG | 0.526651 | 5.4:+56727746 | MS.gene26108:CDS |
| TTGCTTTGTTTACTTGCTCG+TGG | 0.528460 | 5.4:+56724320 | MS.gene26108:CDS |
| AGAATCAATCTCTAGCCTCT+TGG | 0.533815 | 5.4:-56730577 | None:intergenic |
| GGATGTTCTAAGAGTAAAGT+GGG | 0.533972 | 5.4:+56727821 | MS.gene26108:CDS |
| ACACATTATCATTCACGCAA+TGG | 0.538138 | 5.4:-56731165 | None:intergenic |
| TATCAAATACTTCATCCAAA+GGG | 0.539111 | 5.4:+56729609 | MS.gene26108:CDS |
| CACGACAATACCATTATAGA+CGG | 0.541024 | 5.4:-56730646 | None:intergenic |
| AATACTTCATCCAAAGGGTC+CGG | 0.542313 | 5.4:+56729614 | MS.gene26108:CDS |
| ATGGCAAGTGGTTCTTGTAA+GGG | 0.544121 | 5.4:+56727464 | MS.gene26108:CDS |
| CATTATAGACGGGATGTGCT+CGG | 0.545650 | 5.4:-56730635 | None:intergenic |
| GCAGTTGGATCTATGAAAGT+AGG | 0.545778 | 5.4:+56727947 | MS.gene26108:CDS |
| TATCACATTTGTCTATCTGA+TGG | 0.547483 | 5.4:-56731237 | None:intergenic |
| GATAGCTGGAGCAAGTGCGC+TGG | 0.548698 | 5.4:-56724696 | None:intergenic |
| ATGACTCAGATTGGGAAGAT+GGG | 0.549098 | 5.4:+56724073 | MS.gene26108:CDS |
| TGGACATCATTTGACACCTC+AGG | 0.549556 | 5.4:-56731145 | None:intergenic |
| TCTAAGAGTAAAGTGGGGTC+GGG | 0.549637 | 5.4:+56727827 | MS.gene26108:CDS |
| CTTTGGTACTTCAACACCAA+TGG | 0.553064 | 5.4:+56727490 | MS.gene26108:CDS |
| GTCTATCTGATGGTGTCTAG+GGG | 0.554794 | 5.4:-56731227 | None:intergenic |
| GAAATATCCAAGGGTGCTGT+GGG | 0.555051 | 5.4:+56723680 | MS.gene26108:CDS |
| TCTTGAATTTGAGATGCAGA+TGG | 0.555803 | 5.4:+56727772 | MS.gene26108:CDS |
| AAGAGAGATGGCTCCGAGAA+GGG | 0.560448 | 5.4:+56729700 | MS.gene26108:CDS |
| AAAGAGAGATGGCTCCGAGA+AGG | 0.562954 | 5.4:+56729699 | MS.gene26108:CDS |
| GAAACTACCTGCTGGTTGGT+TGG | 0.565218 | 5.4:-56729464 | None:intergenic |
| TCTATGTCCTTTAATCTCAT+GGG | 0.565273 | 5.4:+56724746 | MS.gene26108:CDS |
| CTAGAACGAGCGTGGTCAAG+TGG | 0.569265 | 5.4:+56730485 | MS.gene26108:intron |
| AGGACGTTGAGTTAGAAACT+AGG | 0.570154 | 5.4:+56729423 | MS.gene26108:CDS |
| GTATCAAATACTTCATCCAA+AGG | 0.571178 | 5.4:+56729608 | MS.gene26108:CDS |
| GTCTGGAGCAACTGGAGGAG+TGG | 0.572180 | 5.4:+56729322 | MS.gene26108:CDS |
| AGAAAATTTGACAGGAAAGT+GGG | 0.572265 | 5.4:+56728006 | MS.gene26108:CDS |
| CAACGGAAGAAGAGACCCTC+AGG | 0.572902 | 5.4:+56722643 | MS.gene26108:CDS |
| CCGAGCTTCTGCTGAAGACA+AGG | 0.575812 | 5.4:+56724173 | MS.gene26108:CDS |
| GGACGTTGAGTTAGAAACTA+GGG | 0.577631 | 5.4:+56729424 | MS.gene26108:CDS |
| ATCGTTGACCGAAATATCCA+AGG | 0.579259 | 5.4:+56723670 | MS.gene26108:CDS |
| GCATCGCTTTGTCAACAAAG+AGG | 0.581852 | 5.4:-56731344 | None:intergenic |
| TGGCAAGTGGTTCTTGTAAG+GGG | 0.585661 | 5.4:+56727465 | MS.gene26108:CDS |
| TGCGAAGCGCTTCCTCTGCG+TGG | 0.586768 | 5.4:-56722622 | None:intergenic |
| TGGATGTTCTAAGAGTAAAG+TGG | 0.587047 | 5.4:+56727820 | MS.gene26108:CDS |
| AGAAGACAAGGTTGAAGCCA+TGG | 0.588806 | 5.4:+56728063 | MS.gene26108:CDS |
| GCGAGTTAATTCAACATGGT+GGG | 0.589568 | 5.4:+56729268 | MS.gene26108:CDS |
| TCAGATTGCAGCTTTGTCGG+TGG | 0.591353 | 5.4:+56727000 | MS.gene26108:intron |
| CACAAGTCCTAGGGTAAACA+GGG | 0.591721 | 5.4:-56729659 | None:intergenic |
| GGGCCAAAGATGTGACCCGC+AGG | 0.594785 | 5.4:+56728137 | MS.gene26108:CDS |
| AGACGTTTCAGCAAGTATCC+CGG | 0.596230 | 5.4:+56731267 | MS.gene26108:CDS |
| TGTTCTGCATGCAGCAACCA+TGG | 0.597755 | 5.4:-56728080 | None:intergenic |
| GCAGAGGAAGCGCTTCGCAA+CGG | 0.598324 | 5.4:+56722626 | MS.gene26108:CDS |
| CCTTGTCTTCAGCAGAAGCT+CGG | 0.599067 | 5.4:-56724173 | None:intergenic |
| ACTATTCCATTCACCGCGTG+AGG | 0.599144 | 5.4:-56729989 | None:intergenic |
| GATGTTTCATCTCTTAAACC+AGG | 0.600342 | 5.4:+56727425 | MS.gene26108:CDS |
| GGTGAATGGAATAGTTCCTA+AGG | 0.602073 | 5.4:+56729997 | MS.gene26108:CDS |
| TATACTTCTGCCCAATACAA+AGG | 0.602473 | 5.4:-56727974 | None:intergenic |
| GATTATTGATGGAGAAGACA+AGG | 0.603317 | 5.4:+56728051 | MS.gene26108:CDS |
| GTCATGTAAGTATAGACGAT+GGG | 0.603982 | 5.4:+56724025 | MS.gene26108:CDS |
| ACAAAATGGAACTCAAGTTG+TGG | 0.604091 | 5.4:+56723918 | MS.gene26108:CDS |
| ATTGGCTGAACTTGTTCACA+AGG | 0.604365 | 5.4:+56724292 | MS.gene26108:CDS |
| GTCACTACTACCACAAATTG+TGG | 0.606528 | 5.4:-56731194 | None:intergenic |
| ACTTGCTGAAACGTCTGGAT+CGG | 0.612960 | 5.4:-56731260 | None:intergenic |
| CTGTTATGACCAAAGAGAGA+TGG | 0.614412 | 5.4:+56729688 | MS.gene26108:CDS |
| ACCCAATGAACATCCTGCAA+AGG | 0.617404 | 5.4:+56729734 | MS.gene26108:CDS |
| GTCAAACTCACAAACTTCTG+AGG | 0.619706 | 5.4:+56727685 | MS.gene26108:CDS |
| CAGTTTGCACACAAGTCCTA+GGG | 0.621494 | 5.4:-56729668 | None:intergenic |
| ACGACAATACCATTATAGAC+GGG | 0.622990 | 5.4:-56730645 | None:intergenic |
| TGCTGTAGAAATTAGTTGGG+GGG | 0.625544 | 5.4:-56727927 | None:intergenic |
| AGCGAGTTAATTCAACATGG+TGG | 0.628936 | 5.4:+56729267 | MS.gene26108:CDS |
| ACGTGAGGGTAGTCCTGAAG+AGG | 0.633646 | 5.4:+56724961 | MS.gene26108:CDS |
| TTAGAGTCTGGAGCAACTGG+AGG | 0.635750 | 5.4:+56729317 | MS.gene26108:CDS |
| ATATTAGGTACTGTATGAAG+TGG | 0.639077 | 5.4:+56729228 | MS.gene26108:intron |
| ATCAGCTTTAGAATTACGTG+AGG | 0.639521 | 5.4:+56724946 | MS.gene26108:CDS |
| ACTGCTGTAGAAATTAGTTG+GGG | 0.640359 | 5.4:-56727929 | None:intergenic |
| TCATAAATTAAAGAGGAAAG+GGG | 0.644539 | 5.4:+56727748 | MS.gene26108:CDS |
| AGAAGAAGAATGCCACGCAG+AGG | 0.646227 | 5.4:+56722610 | None:intergenic |
| TCTGAGAAATGTCTTCCACC+AGG | 0.648250 | 5.4:+56730516 | MS.gene26108:CDS |
| GGAAGATGGGACAGTTGCCG+TGG | 0.650172 | 5.4:+56724086 | MS.gene26108:CDS |
| AAATCCCAACACAACACCCA+AGG | 0.651239 | 5.4:+56723531 | MS.gene26108:CDS |
| ACCATTGAATCTTCCTCACG+CGG | 0.653369 | 5.4:+56729976 | MS.gene26108:CDS |
| TGTCATAGGATGATCATCCA+CGG | 0.653704 | 5.4:-56724103 | None:intergenic |
| CTGCTACGTCATGCTAACAA+AGG | 0.656476 | 5.4:+56723707 | MS.gene26108:CDS |
| CACAGCGAGTTAATTCAACA+TGG | 0.657556 | 5.4:+56729264 | MS.gene26108:CDS |
| CTACGTCATGCTAACAAAGG+TGG | 0.658054 | 5.4:+56723710 | MS.gene26108:CDS |
| TCGTGGAAGATTAATAGACA+GGG | 0.659551 | 5.4:+56724337 | MS.gene26108:CDS |
| TCGTTGACCGAAATATCCAA+GGG | 0.665933 | 5.4:+56723671 | MS.gene26108:CDS |
| GGTCATGTAAGTATAGACGA+TGG | 0.669620 | 5.4:+56724024 | MS.gene26108:CDS |
| GCGCATATTCTGTTGCCAAG+AGG | 0.670329 | 5.4:+56730562 | MS.gene26108:CDS |
| GTTCAAGGACATACTGCTAG+AGG | 0.671109 | 5.4:+56730677 | MS.gene26108:CDS |
| ATTGGTTTAAAAGATTGACC+TGG | 0.673292 | 5.4:-56727443 | None:intergenic |
| CTGCTGTAGAAATTAGTTGG+GGG | 0.681676 | 5.4:-56727928 | None:intergenic |
| GATTCTGCAGATGAGAAATG+TGG | 0.684607 | 5.4:+56724003 | MS.gene26108:CDS |
| CCAGACTCTAAGTTTCTCAG+TGG | 0.685977 | 5.4:-56729305 | None:intergenic |
| TAATAACAGTCTGACACCTG+AGG | 0.691745 | 5.4:+56731129 | MS.gene26108:CDS |
| TTTCTTTGCAGACGACTCAG+GGG | 0.695620 | 5.4:-56724142 | None:intergenic |
| CTTAAGTGCACTGTACCTGG+TGG | 0.700022 | 5.4:-56730531 | None:intergenic |
| TCAGCTTTAGAATTACGTGA+GGG | 0.702528 | 5.4:+56724947 | MS.gene26108:CDS |
| GCTGATGCCAAAGCAAAGTG+CGG | 0.711583 | 5.4:-56724929 | None:intergenic |
| TTGACAAAGCGATGCCAATG+TGG | 0.715315 | 5.4:+56731352 | MS.gene26108:CDS |
| GATGTTCTAAGAGTAAAGTG+GGG | 0.775780 | 5.4:+56727822 | MS.gene26108:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 56722619 | 56731402 | 56722619 | ID=MS.gene26108 |
| chr5.4 | mRNA | 56722619 | 56731402 | 56722619 | ID=MS.gene26108.t1;Parent=MS.gene26108 |
| chr5.4 | exon | 56722619 | 56722664 | 56722619 | ID=MS.gene26108.t1.exon1;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56722619 | 56722664 | 56722619 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56723520 | 56723552 | 56723520 | ID=MS.gene26108.t1.exon2;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56723520 | 56723552 | 56723520 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56723669 | 56723754 | 56723669 | ID=MS.gene26108.t1.exon3;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56723669 | 56723754 | 56723669 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56723901 | 56724194 | 56723901 | ID=MS.gene26108.t1.exon4;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56723901 | 56724194 | 56723901 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56724290 | 56724382 | 56724290 | ID=MS.gene26108.t1.exon5;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56724290 | 56724382 | 56724290 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56724675 | 56724767 | 56724675 | ID=MS.gene26108.t1.exon6;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56724675 | 56724767 | 56724675 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56724881 | 56724982 | 56724881 | ID=MS.gene26108.t1.exon7;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56724881 | 56724982 | 56724881 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56727004 | 56727053 | 56727004 | ID=MS.gene26108.t1.exon8;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56727004 | 56727053 | 56727004 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56727409 | 56728158 | 56727409 | ID=MS.gene26108.t1.exon9;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56727409 | 56728158 | 56727409 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56729235 | 56729478 | 56729235 | ID=MS.gene26108.t1.exon10;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56729235 | 56729478 | 56729235 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56729561 | 56729755 | 56729561 | ID=MS.gene26108.t1.exon11;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56729561 | 56729755 | 56729561 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56729863 | 56730018 | 56729863 | ID=MS.gene26108.t1.exon12;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56729863 | 56730018 | 56729863 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56730489 | 56730698 | 56730489 | ID=MS.gene26108.t1.exon13;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56730489 | 56730698 | 56730489 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| chr5.4 | exon | 56731085 | 56731402 | 56731085 | ID=MS.gene26108.t1.exon14;Parent=MS.gene26108.t1 |
| chr5.4 | CDS | 56731085 | 56731402 | 56731085 | ID=cds.MS.gene26108.t1;Parent=MS.gene26108.t1 |
| Gene Sequence |
| Protein sequence |
