Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26250.t1 | XP_024638993.1 | 90.5 | 274 | 26 | 0 | 1 | 274 | 1 | 274 | 5.50E-98 | 367.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26250.t1 | P55871 | 89.0 | 172 | 18 | 1 | 103 | 273 | 99 | 270 | 9.9e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26250.t1 | G7K0U8 | 90.5 | 274 | 26 | 0 | 1 | 274 | 49 | 322 | 4.0e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26250 | MS.gene063366 | PPI |
| MS.gene26250 | MS.gene060216 | PPI |
| MS.gene26250 | MS.gene52139 | PPI |
| MS.gene26250 | MS.gene22877 | PPI |
| MS.gene26250 | MS.gene09852 | PPI |
| MS.gene26250 | MS.gene039110 | PPI |
| MS.gene26250 | MS.gene018560 | PPI |
| MS.gene26250 | MS.gene63721 | PPI |
| MS.gene26250 | MS.gene058030 | PPI |
| MS.gene26250 | MS.gene024538 | PPI |
| MS.gene066163 | MS.gene26250 | PPI |
| MS.gene040581 | MS.gene26250 | PPI |
| MS.gene26250 | MS.gene025997 | PPI |
| MS.gene26250 | MS.gene003452 | PPI |
| MS.gene26250 | MS.gene050556 | PPI |
| MS.gene26250 | MS.gene64519 | PPI |
| MS.gene26250 | MS.gene061898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26250.t1 | MTR_5g075530 | 98.540 | 274 | 4 | 0 | 1 | 274 | 49 | 322 | 0.0 | 556 |
| MS.gene26250.t1 | MTR_3g467620 | 83.212 | 274 | 40 | 3 | 1 | 274 | 1 | 268 | 3.26e-149 | 418 |
| MS.gene26250.t1 | MTR_5g075530 | 97.688 | 173 | 4 | 0 | 1 | 173 | 49 | 221 | 1.25e-120 | 344 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26250.t1 | AT5G20920 | 72.794 | 272 | 66 | 4 | 1 | 270 | 1 | 266 | 6.93e-132 | 374 |
| MS.gene26250.t1 | AT5G20920 | 72.794 | 272 | 66 | 4 | 1 | 270 | 1 | 266 | 6.93e-132 | 374 |
| MS.gene26250.t1 | AT5G20920 | 72.794 | 272 | 65 | 5 | 1 | 270 | 1 | 265 | 1.36e-130 | 371 |
| MS.gene26250.t1 | AT3G07920 | 67.763 | 152 | 41 | 2 | 123 | 270 | 17 | 164 | 5.96e-68 | 208 |
| MS.gene26250.t1 | AT5G01940 | 56.338 | 142 | 57 | 3 | 119 | 259 | 72 | 209 | 2.52e-48 | 160 |
| MS.gene26250.t1 | AT5G01940 | 56.338 | 142 | 57 | 3 | 119 | 259 | 104 | 241 | 3.70e-48 | 160 |
| MS.gene26250.t1 | AT5G01940 | 53.205 | 156 | 64 | 4 | 119 | 267 | 72 | 225 | 3.39e-46 | 155 |
Find 69 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTCTTGCTTGCTGAAC+TGG | 0.152413 | 5.4:+58829557 | MS.gene26250:CDS |
| TGATGAATCAATGGATAAAT+TGG | 0.263265 | 5.4:+58827930 | MS.gene26250:CDS |
| TGGAGAGACAGTTGAAGATT+TGG | 0.300614 | 5.4:+58828290 | MS.gene26250:CDS |
| AGAATTCCTTCAAAGTTCTT+TGG | 0.305356 | 5.4:-58829636 | None:intergenic |
| CTTTGCAGCCTCGTTATCCT+TGG | 0.346996 | 5.4:+58828483 | MS.gene26250:CDS |
| CGCCGATCTCCAGCCAGATC+TGG | 0.364048 | 5.4:-58829092 | None:intergenic |
| TACTGCTTGCAGTGTGGATC+AGG | 0.377983 | 5.4:+58830047 | MS.gene26250:intron |
| GATGAATATGTCATTTGTAT+TGG | 0.394913 | 5.4:+58829893 | MS.gene26250:intron |
| GGTACTAGTGGTTCCCTTGA+TGG | 0.396000 | 5.4:+58829579 | MS.gene26250:CDS |
| GCAACAAAACCAGCTTTGAT+TGG | 0.396441 | 5.4:-58830083 | None:intergenic |
| TCCTTTGAAAGTAATGTGTC+TGG | 0.399517 | 5.4:-58829926 | None:intergenic |
| TCCATTGATTCATCATCTGC+AGG | 0.409928 | 5.4:-58827922 | None:intergenic |
| TTGTGCCTTCACGGAGAACT+TGG | 0.412424 | 5.4:-58829136 | None:intergenic |
| TTTGCACCAAAGAACTTTGA+AGG | 0.417542 | 5.4:+58829630 | MS.gene26250:CDS |
| CCTTGATGGACAACAGAGAT+TGG | 0.437686 | 5.4:+58829593 | MS.gene26250:CDS |
| TGTGCCTTCACGGAGAACTT+GGG | 0.454068 | 5.4:-58829135 | None:intergenic |
| CCAATCTCTGTTGTCCATCA+AGG | 0.456276 | 5.4:-58829593 | None:intergenic |
| CCCTGCAGATGATGAATCAA+TGG | 0.465131 | 5.4:+58827921 | MS.gene26250:CDS |
| TATTCACTTGCAGTTTCTGA+TGG | 0.471762 | 5.4:+58828082 | MS.gene26250:intron |
| GTGTTGGCAGAAGGAATGCC+GGG | 0.472327 | 5.4:+58830108 | MS.gene26250:CDS |
| AAGAAAGCCATAACATGGTC+TGG | 0.472766 | 5.4:-58829543 | None:intergenic |
| GCTTTCTTGCTTGCTGAACT+GGG | 0.473966 | 5.4:+58829558 | MS.gene26250:CDS |
| TGAAACACCAAGTGGTTTGA+AGG | 0.477271 | 5.4:+58826918 | MS.gene26250:CDS |
| TTTGCAGCCTCGTTATCCTT+GGG | 0.480164 | 5.4:+58828484 | MS.gene26250:CDS |
| ACGTGAACATAATCCAGATC+TGG | 0.488853 | 5.4:+58829079 | MS.gene26250:CDS |
| CGTGTTGGCAGAAGGAATGC+CGG | 0.492506 | 5.4:+58830107 | MS.gene26250:CDS |
| CTTCTTTCTCCGGTGTGAGA+AGG | 0.497603 | 5.4:+58829958 | MS.gene26250:CDS |
| CAGCCTCGTTATCCTTGGGA+AGG | 0.501422 | 5.4:+58828488 | MS.gene26250:CDS |
| AGAACCGTCTCTTCTTTCTC+CGG | 0.503608 | 5.4:+58829948 | MS.gene26250:CDS |
| TCGACCGCCAGACCATGTTA+TGG | 0.515326 | 5.4:+58829536 | MS.gene26250:CDS |
| TCCAGACACATTACTTTCAA+AGG | 0.516179 | 5.4:+58829925 | MS.gene26250:CDS |
| TTGTTGCTCGTGTTGGCAGA+AGG | 0.525657 | 5.4:+58830099 | MS.gene26250:CDS |
| ATCCAGATCTGGCTGGAGAT+CGG | 0.528055 | 5.4:+58829090 | MS.gene26250:CDS |
| CAACAGAGATTGGTCGTGAA+GGG | 0.528713 | 5.4:+58829603 | MS.gene26250:CDS |
| GTGCCTTCACGGAGAACTTG+GGG | 0.537378 | 5.4:-58829134 | None:intergenic |
| TGATCGTGATTATACATATG+AGG | 0.537913 | 5.4:+58828514 | MS.gene26250:CDS |
| TCAGTTGCTCCAATCAAAGC+TGG | 0.541836 | 5.4:+58830074 | MS.gene26250:CDS |
| ATCGGCGAAGGACAGTTATG+AGG | 0.542408 | 5.4:+58829108 | MS.gene26250:CDS |
| GAGAAGATAGAAAATCTGTC+AGG | 0.544015 | 5.4:+58827955 | MS.gene26250:CDS |
| ACCTCCTCCTTCAAACCACT+TGG | 0.546295 | 5.4:-58826925 | None:intergenic |
| ATTCACTTGCAGTTTCTGAT+GGG | 0.549550 | 5.4:+58828083 | MS.gene26250:intron |
| TTTGGTACAGCTTCTTGGCA+GGG | 0.550765 | 5.4:+58829043 | MS.gene26250:intron |
| CAATCTCTGTTGTCCATCAA+GGG | 0.557834 | 5.4:-58829592 | None:intergenic |
| CTTGCTGAACTGGGTACTAG+TGG | 0.558172 | 5.4:+58829567 | MS.gene26250:CDS |
| ACCAAGTGGTTTGAAGGAGG+AGG | 0.558508 | 5.4:+58826924 | MS.gene26250:CDS |
| ATCTGGCTGGAGATCGGCGA+AGG | 0.563488 | 5.4:+58829096 | MS.gene26250:CDS |
| GAACATAATCCAGATCTGGC+TGG | 0.564898 | 5.4:+58829083 | MS.gene26250:CDS |
| TCTTCAACTGTCTCTCCACT+AGG | 0.576176 | 5.4:-58828285 | None:intergenic |
| TATTAACATACGATCTGCAC+AGG | 0.579000 | 5.4:-58829187 | None:intergenic |
| AGCCTCGTTATCCTTGGGAA+GGG | 0.579244 | 5.4:+58828489 | MS.gene26250:CDS |
| GAGACAGTTGAAGATTTGGA+TGG | 0.591636 | 5.4:+58828294 | MS.gene26250:CDS |
| CCATTGATTCATCATCTGCA+GGG | 0.596488 | 5.4:-58827921 | None:intergenic |
| AGTAAGGCCAAATCATGCCC+CGG | 0.607540 | 5.4:-58830126 | None:intergenic |
| CCTCCCCAAGTTCTCCGTGA+AGG | 0.608543 | 5.4:+58829131 | MS.gene26250:CDS |
| ACAACAGAGATTGGTCGTGA+AGG | 0.611687 | 5.4:+58829602 | MS.gene26250:CDS |
| TTAAATGATATTGATGAGAG+TGG | 0.613941 | 5.4:+58828261 | MS.gene26250:CDS |
| CTCCCTTCCCAAGGATAACG+AGG | 0.619640 | 5.4:-58828491 | None:intergenic |
| CAAGCAAGAAAGCCATAACA+TGG | 0.625960 | 5.4:-58829548 | None:intergenic |
| CCTTCACGGAGAACTTGGGG+AGG | 0.626648 | 5.4:-58829131 | None:intergenic |
| AATACTTACTGATATATCGT+CGG | 0.636337 | 5.4:-58829659 | None:intergenic |
| TCACGATCACTCCCTTCCCA+AGG | 0.642187 | 5.4:-58828500 | None:intergenic |
| GAAAATTCACCTTCTCACAC+CGG | 0.642926 | 5.4:-58829967 | None:intergenic |
| ATTGATGAGAGTGGTCCTAG+TGG | 0.645228 | 5.4:+58828270 | MS.gene26250:CDS |
| AACACCAAGTGGTTTGAAGG+AGG | 0.651800 | 5.4:+58826921 | MS.gene26250:CDS |
| TGTTGGCAGAAGGAATGCCG+GGG | 0.662824 | 5.4:+58830109 | MS.gene26250:CDS |
| CACACCGGAGAAAGAAGAGA+CGG | 0.669379 | 5.4:-58829952 | None:intergenic |
| TCGTGATTATACATATGAGG+AGG | 0.690862 | 5.4:+58828517 | MS.gene26250:CDS |
| AAAGCCATAACATGGTCTGG+CGG | 0.709853 | 5.4:-58829540 | None:intergenic |
| ATGGCAGATGAAACACCAAG+TGG | 0.740265 | 5.4:+58826910 | MS.gene26250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAATATTTTTTTTTTATC+TGG | + | chr5.4:58829203-58829222 | MS.gene26250:intron | 10.0% |
| !! | ATATAATCAAATATTCTCTA+AGG | - | chr5.4:58828855-58828874 | None:intergenic | 15.0% |
| !! | TAGAGAATATTTGATTATAT+AGG | + | chr5.4:58828855-58828874 | MS.gene26250:intron | 15.0% |
| !!! | TTTTTAAAGTTATCTGAAAA+TGG | + | chr5.4:58828031-58828050 | MS.gene26250:intron | 15.0% |
| !! | AAGATACTAATATATGAATC+AGG | + | chr5.4:58827659-58827678 | MS.gene26250:intron | 20.0% |
| !! | ATACTAATATATGATAACCA+AGG | + | chr5.4:58827596-58827615 | MS.gene26250:intron | 20.0% |
| !! | ATACTAATATATGATAACCA+TGG | + | chr5.4:58827596-58827615 | MS.gene26250:intron | 20.0% |
| !! | ATATGTAGAAGAAAAATACT+GGG | - | chr5.4:58829435-58829454 | None:intergenic | 20.0% |
| !! | ATTTATAATGCATGATATCT+TGG | + | chr5.4:58827271-58827290 | MS.gene26250:intron | 20.0% |
| !! | CAAATAAAAAACTTTAACTC+TGG | - | chr5.4:58828168-58828187 | None:intergenic | 20.0% |
| !! | GATTCAAATTAGTTATTATC+TGG | + | chr5.4:58828690-58828709 | MS.gene26250:intron | 20.0% |
| !! | TAAAACGATAGATAACTATT+GGG | - | chr5.4:58826971-58826990 | None:intergenic | 20.0% |
| !! | TGAATTTCATTGTTGTAAAT+TGG | + | chr5.4:58827226-58827245 | MS.gene26250:intron | 20.0% |
| !! | TTAAAACGATAGATAACTAT+TGG | - | chr5.4:58826972-58826991 | None:intergenic | 20.0% |
| !! | TTGAATCTTGAATCAAAAAT+AGG | - | chr5.4:58827328-58827347 | None:intergenic | 20.0% |
| !! | TTGTTAAACAATAGCTATAA+CGG | + | chr5.4:58826998-58827017 | MS.gene26250:intron | 20.0% |
| !!! | AATAGTTTAATTGACTGTTT+TGG | + | chr5.4:58828744-58828763 | MS.gene26250:intron | 20.0% |
| !!! | ATAGTTTAATTGACTGTTTT+GGG | + | chr5.4:58828745-58828764 | MS.gene26250:intron | 20.0% |
| !!! | ATATAATTTGTGTTTGATAG+TGG | + | chr5.4:58828344-58828363 | MS.gene26250:intron | 20.0% |
| !!! | CAGAGTTAAAGTTTTTTATT+TGG | + | chr5.4:58828166-58828185 | MS.gene26250:intron | 20.0% |
| !!! | GTGATTCAAATTAGTTTTTT+TGG | + | chr5.4:58828659-58828678 | MS.gene26250:intron | 20.0% |
| !!! | TTCTTTTGTCATTTGATTTA+TGG | - | chr5.4:58827352-58827371 | None:intergenic | 20.0% |
| ! | AAAAACTGATTACAGAACAT+CGG | - | chr5.4:58827205-58827224 | None:intergenic | 25.0% |
| ! | AACAGTCAATTAAACTATTC+TGG | - | chr5.4:58828743-58828762 | None:intergenic | 25.0% |
| ! | AAGTGAATAAAGAATAACCA+AGG | - | chr5.4:58829395-58829414 | None:intergenic | 25.0% |
| ! | AATACTGAATGGTAAAACAA+TGG | - | chr5.4:58830013-58830032 | None:intergenic | 25.0% |
| ! | AATACTTACTGATATATCGT+CGG | - | chr5.4:58829662-58829681 | None:intergenic | 25.0% |
| ! | AATCCACAAGGAAAAAAAAA+AGG | - | chr5.4:58829013-58829032 | None:intergenic | 25.0% |
| ! | ACAATATAAATAGTGTATCG+CGG | - | chr5.4:58827069-58827088 | None:intergenic | 25.0% |
| ! | ACTGAAAAAAAAGTTGTTGT+TGG | + | chr5.4:58827390-58827409 | MS.gene26250:intron | 25.0% |
| ! | AGTGAATAAAGAATAACCAA+GGG | - | chr5.4:58829394-58829413 | None:intergenic | 25.0% |
| ! | ATCCACAAGGAAAAAAAAAA+GGG | - | chr5.4:58829012-58829031 | None:intergenic | 25.0% |
| ! | ATGTACATCAGCATAAAAAA+TGG | - | chr5.4:58828547-58828566 | None:intergenic | 25.0% |
| ! | ATGTTAATTATGATCAACAC+GGG | + | chr5.4:58828829-58828848 | MS.gene26250:intron | 25.0% |
| ! | CATGTTAATTATGATCAACA+CGG | + | chr5.4:58828828-58828847 | MS.gene26250:intron | 25.0% |
| ! | GATATGTAGAAGAAAAATAC+TGG | - | chr5.4:58829436-58829455 | None:intergenic | 25.0% |
| ! | TAATATATGATAACCAAGGT+TGG | + | chr5.4:58827600-58827619 | MS.gene26250:intron | 25.0% |
| ! | TAATATATGATAACCATGGT+TGG | + | chr5.4:58827786-58827805 | MS.gene26250:intron | 25.0% |
| ! | TGATGAATCAATGGATAAAT+TGG | + | chr5.4:58827930-58827949 | MS.gene26250:CDS | 25.0% |
| ! | TTAAAGTTATCTGAAAATGG+TGG | + | chr5.4:58828034-58828053 | MS.gene26250:intron | 25.0% |
| ! | TTAAATGATATTGATGAGAG+TGG | + | chr5.4:58828261-58828280 | MS.gene26250:CDS | 25.0% |
| ! | TTCCAAGTAAAAACTGAAAA+GGG | - | chr5.4:58828973-58828992 | None:intergenic | 25.0% |
| ! | TTTCCAAGTAAAAACTGAAA+AGG | - | chr5.4:58828974-58828993 | None:intergenic | 25.0% |
| !! | AACTGTGTTTGTGAATTTTA+TGG | + | chr5.4:58829163-58829182 | MS.gene26250:CDS | 25.0% |
| !! | ATTCTACATTTTATCCTTGT+TGG | + | chr5.4:58828878-58828897 | MS.gene26250:intron | 25.0% |
| !! | ATTGTTGTAAATTGGTGATT+TGG | + | chr5.4:58827234-58827253 | MS.gene26250:intron | 25.0% |
| !! | GATGAATATGTCATTTGTAT+TGG | + | chr5.4:58829893-58829912 | MS.gene26250:intron | 25.0% |
| !! | TTCTTCTTCTTTTTCTTAGT+AGG | - | chr5.4:58827883-58827902 | None:intergenic | 25.0% |
| !! | TTTTTCTTAGTAGGATCAAA+TGG | - | chr5.4:58827874-58827893 | None:intergenic | 25.0% |
| !!! | CTAGAGATTTTTGTATTGAT+TGG | + | chr5.4:58827530-58827549 | MS.gene26250:intron | 25.0% |
| !!! | GAAGTTTGTTATTTGATTGT+AGG | + | chr5.4:58828224-58828243 | MS.gene26250:intron | 25.0% |
| AAAACTGATTACAGAACATC+GGG | - | chr5.4:58827204-58827223 | None:intergenic | 30.0% | |
| AAATCAGCTCAGAAATACTA+TGG | - | chr5.4:58828627-58828646 | None:intergenic | 30.0% | |
| AATGGTAAAACAATGGAAAC+GGG | - | chr5.4:58830006-58830025 | None:intergenic | 30.0% | |
| AGAATTCCTTCAAAGTTCTT+TGG | - | chr5.4:58829639-58829658 | None:intergenic | 30.0% | |
| AGGATTTATGACAATGAATC+AGG | + | chr5.4:58827471-58827490 | MS.gene26250:intron | 30.0% | |
| AGTGACTCATTAGAATGAAT+CGG | + | chr5.4:58827430-58827449 | MS.gene26250:intron | 30.0% | |
| GAATGGTAAAACAATGGAAA+CGG | - | chr5.4:58830007-58830026 | None:intergenic | 30.0% | |
| GCTAATGAATGCTAAACTTA+TGG | + | chr5.4:58828408-58828427 | MS.gene26250:intron | 30.0% | |
| TAATTTGAATCACAGATGAG+AGG | - | chr5.4:58828652-58828671 | None:intergenic | 30.0% | |
| TCCACAAGGAAAAAAAAAAG+GGG | - | chr5.4:58829011-58829030 | None:intergenic | 30.0% | |
| TCTTGAATCAAAAATAGGTC+TGG | - | chr5.4:58827323-58827342 | None:intergenic | 30.0% | |
| TGATCGTGATTATACATATG+AGG | + | chr5.4:58828514-58828533 | MS.gene26250:CDS | 30.0% | |
| TTAAAAACATAAACCATGCC+AGG | - | chr5.4:58828018-58828037 | None:intergenic | 30.0% | |
| ! | AAAATCGTTTAGAATCCACA+AGG | - | chr5.4:58829025-58829044 | None:intergenic | 30.0% |
| ! | CACTAGAGATTTGTATTGAT+TGG | + | chr5.4:58827716-58827735 | MS.gene26250:intron | 30.0% |
| ! | TACCCTTTTCAGTTTTTACT+TGG | + | chr5.4:58828968-58828987 | MS.gene26250:intron | 30.0% |
| ! | TGACAGATTTTCTATCTTCT+CGG | - | chr5.4:58827956-58827975 | None:intergenic | 30.0% |
| ! | TGTGGATTCTAAACGATTTT+TGG | + | chr5.4:58829025-58829044 | MS.gene26250:intron | 30.0% |
| !! | AATGACAAAAGAAAAGTGTC+TGG | + | chr5.4:58827359-58827378 | MS.gene26250:intron | 30.0% |
| !! | CATTCAGTATTCTAAAACAC+TGG | + | chr5.4:58830022-58830041 | MS.gene26250:intron | 30.0% |
| !! | TAGTTATTATCTGGTTCTTG+TGG | + | chr5.4:58828699-58828718 | MS.gene26250:intron | 30.0% |
| !! | TGAAAGCATTCTTAAAACCA+AGG | - | chr5.4:58827158-58827177 | None:intergenic | 30.0% |
| !! | TTTGGCTAGTCTAGATTTAT+TGG | + | chr5.4:58828184-58828203 | MS.gene26250:intron | 30.0% |
| !!! | CAGTGTTTTAGAATACTGAA+TGG | - | chr5.4:58830024-58830043 | None:intergenic | 30.0% |
| AATCTGCTGCATTTCAGAAA+TGG | + | chr5.4:58829699-58829718 | MS.gene26250:intron | 35.0% | |
| AATGCATGATATCTTGGTCA+TGG | + | chr5.4:58827277-58827296 | MS.gene26250:intron | 35.0% | |
| ACAAGGAAAAAAAAAAGGGG+AGG | - | chr5.4:58829008-58829027 | None:intergenic | 35.0% | |
| ACATCTTGAACTTTCACTAG+AGG | + | chr5.4:58829240-58829259 | MS.gene26250:intron | 35.0% | |
| ATTCACTTGCAGTTTCTGAT+GGG | + | chr5.4:58828083-58828102 | MS.gene26250:intron | 35.0% | |
| CTTGCAGACGTTAATACATT+TGG | - | chr5.4:58829318-58829337 | None:intergenic | 35.0% | |
| GAAAAAAAAAAGGGGAGGAT+TGG | - | chr5.4:58829003-58829022 | None:intergenic | 35.0% | |
| GAGAAGATAGAAAATCTGTC+AGG | + | chr5.4:58827955-58827974 | MS.gene26250:CDS | 35.0% | |
| GCTTTACTGCTATAATGTAG+TGG | + | chr5.4:58827022-58827041 | MS.gene26250:intron | 35.0% | |
| GGGTAGATTGAAAATGCTTT+AGG | - | chr5.4:58828953-58828972 | None:intergenic | 35.0% | |
| GTGACTCATTAGAATGAATC+GGG | + | chr5.4:58827431-58827450 | MS.gene26250:intron | 35.0% | |
| GTTATCTGAAAATGGTGGTT+AGG | + | chr5.4:58828039-58828058 | MS.gene26250:intron | 35.0% | |
| TATTAACATACGATCTGCAC+AGG | - | chr5.4:58829190-58829209 | None:intergenic | 35.0% | |
| TATTCACTTGCAGTTTCTGA+TGG | + | chr5.4:58828082-58828101 | MS.gene26250:intron | 35.0% | |
| TCCAGACACATTACTTTCAA+AGG | + | chr5.4:58829925-58829944 | MS.gene26250:CDS | 35.0% | |
| TCGTGATTATACATATGAGG+AGG | + | chr5.4:58828517-58828536 | MS.gene26250:CDS | 35.0% | |
| TGGGAAAATAAACTTACGTC+TGG | - | chr5.4:58826952-58826971 | None:intergenic | 35.0% | |
| TTTGCACCAAAGAACTTTGA+AGG | + | chr5.4:58829630-58829649 | MS.gene26250:CDS | 35.0% | |
| ! | ATTGGTAGCAATTTGACACT+TGG | + | chr5.4:58828202-58828221 | MS.gene26250:intron | 35.0% |
| ! | CTGCTATAATGTAGTGGAAT+TGG | + | chr5.4:58827028-58827047 | MS.gene26250:intron | 35.0% |
| ! | TCCTTTGAAAGTAATGTGTC+TGG | - | chr5.4:58829929-58829948 | None:intergenic | 35.0% |
| ! | TTGTTGGCTACACTATGTTT+AGG | + | chr5.4:58827406-58827425 | MS.gene26250:intron | 35.0% |
| ! | TTTGTAAGCATATTAGCCTG+AGG | + | chr5.4:58829823-58829842 | MS.gene26250:intron | 35.0% |
| !!! | TCCCCTTTTTTTTTTCCTTG+TGG | + | chr5.4:58829007-58829026 | MS.gene26250:intron | 35.0% |
| AACAAGCATTAGCAATCTCC+TGG | + | chr5.4:58827997-58828016 | MS.gene26250:intron | 40.0% | |
| AAGAAAGCCATAACATGGTC+TGG | - | chr5.4:58829546-58829565 | None:intergenic | 40.0% | |
| AATAGTGTATCGCGGAACAA+TGG | - | chr5.4:58827061-58827080 | None:intergenic | 40.0% | |
| ACATCCAGTACAATAACCTC+AGG | - | chr5.4:58829842-58829861 | None:intergenic | 40.0% | |
| ACGTGAACATAATCCAGATC+TGG | + | chr5.4:58829079-58829098 | MS.gene26250:CDS | 40.0% | |
| AGCAACAGCACATTAACAAG+AGG | - | chr5.4:58829488-58829507 | None:intergenic | 40.0% | |
| AGGTTGACAAGCACAGATAA+CGG | - | chr5.4:58827138-58827157 | None:intergenic | 40.0% | |
| CAACAGCACATTAACAAGAG+GGG | - | chr5.4:58829486-58829505 | None:intergenic | 40.0% | |
| CAAGCAAGAAAGCCATAACA+TGG | - | chr5.4:58829551-58829570 | None:intergenic | 40.0% | |
| CAAGTGATTATCATCACCCT+TGG | + | chr5.4:58829375-58829394 | MS.gene26250:intron | 40.0% | |
| CAATCTCTGTTGTCCATCAA+GGG | - | chr5.4:58829595-58829614 | None:intergenic | 40.0% | |
| CATGGATCTCCTTGATTAGT+TGG | + | chr5.4:58827295-58827314 | MS.gene26250:intron | 40.0% | |
| GAAAATTCACCTTCTCACAC+CGG | - | chr5.4:58829970-58829989 | None:intergenic | 40.0% | |
| GACTACAAGTAATGCCTTGA+GGG | + | chr5.4:58828382-58828401 | MS.gene26250:intron | 40.0% | |
| GAGACAGTTGAAGATTTGGA+TGG | + | chr5.4:58828294-58828313 | MS.gene26250:CDS | 40.0% | |
| GCAACAGCACATTAACAAGA+GGG | - | chr5.4:58829487-58829506 | None:intergenic | 40.0% | |
| TGAAACACCAAGTGGTTTGA+AGG | + | chr5.4:58826918-58826937 | MS.gene26250:CDS | 40.0% | |
| TGACTACAAGTAATGCCTTG+AGG | + | chr5.4:58828381-58828400 | MS.gene26250:intron | 40.0% | |
| TGGAGAGACAGTTGAAGATT+TGG | + | chr5.4:58828290-58828309 | MS.gene26250:CDS | 40.0% | |
| TTAGCCTGAGGTTATTGTAC+TGG | + | chr5.4:58829835-58829854 | MS.gene26250:intron | 40.0% | |
| TTATCTGTGCTTGTCAACCT+TGG | + | chr5.4:58827138-58827157 | MS.gene26250:intron | 40.0% | |
| ! | ACAAACTGAAGTACCAACCA+TGG | - | chr5.4:58827802-58827821 | None:intergenic | 40.0% |
| ! | ACATACTGAAGTACCAACCT+TGG | - | chr5.4:58827616-58827635 | None:intergenic | 40.0% |
| ! | CAGTTTTCTTTGTGCCTTCA+CGG | - | chr5.4:58829148-58829167 | None:intergenic | 40.0% |
| ! | GCAACAAAACCAGCTTTGAT+TGG | - | chr5.4:58830086-58830105 | None:intergenic | 40.0% |
| !! | CCATTGATTCATCATCTGCA+GGG | - | chr5.4:58827924-58827943 | None:intergenic | 40.0% |
| !! | CTCTGGAAAAAGTGTCTTAC+AGG | - | chr5.4:58828151-58828170 | None:intergenic | 40.0% |
| !! | TCCATTGATTCATCATCTGC+AGG | - | chr5.4:58827925-58827944 | None:intergenic | 40.0% |
| !! | TGAATTGGCTTGATCCAACA+AGG | - | chr5.4:58828895-58828914 | None:intergenic | 40.0% |
| !! | TTAACAAGAGGGGAGTATTG+AGG | - | chr5.4:58829476-58829495 | None:intergenic | 40.0% |
| !!! | CGATTTTTGGTACAGCTTCT+TGG | + | chr5.4:58829038-58829057 | MS.gene26250:intron | 40.0% |
| AAAGCCATAACATGGTCTGG+CGG | - | chr5.4:58829543-58829562 | None:intergenic | 45.0% | |
| AACACCAAGTGGTTTGAAGG+AGG | + | chr5.4:58826921-58826940 | MS.gene26250:CDS | 45.0% | |
| ACAAGTAATGCCTTGAGGGA+AGG | + | chr5.4:58828386-58828405 | MS.gene26250:intron | 45.0% | |
| AGAACATCGGGCAGAATCAA+AGG | - | chr5.4:58827192-58827211 | None:intergenic | 45.0% | |
| AGAACCGTCTCTTCTTTCTC+CGG | + | chr5.4:58829948-58829967 | MS.gene26250:CDS | 45.0% | |
| ATGGCAGATGAAACACCAAG+TGG | + | chr5.4:58826910-58826929 | MS.gene26250:CDS | 45.0% | |
| ATTGATGAGAGTGGTCCTAG+TGG | + | chr5.4:58828270-58828289 | MS.gene26250:CDS | 45.0% | |
| CCAATCTCTGTTGTCCATCA+AGG | - | chr5.4:58829596-58829615 | None:intergenic | 45.0% | |
| CCCTGCAGATGATGAATCAA+TGG | + | chr5.4:58827921-58827940 | MS.gene26250:CDS | 45.0% | |
| GAACATAATCCAGATCTGGC+TGG | + | chr5.4:58829083-58829102 | MS.gene26250:CDS | 45.0% | |
| GGTCTGGTACCAACTAATCA+AGG | - | chr5.4:58827307-58827326 | None:intergenic | 45.0% | |
| GTACTGTTACCCGATCTTTC+AGG | + | chr5.4:58829508-58829527 | MS.gene26250:intron | 45.0% | |
| GTCGATGCATCCTGAAAGAT+CGG | - | chr5.4:58829521-58829540 | None:intergenic | 45.0% | |
| GTGATCCAAGGGAAGTGAAT+TGG | - | chr5.4:58828910-58828929 | None:intergenic | 45.0% | |
| TAAAACATCAGCCCGTCAGA+AGG | - | chr5.4:58828771-58828790 | None:intergenic | 45.0% | |
| TCAAGCCAATTCACTTCCCT+TGG | + | chr5.4:58828902-58828921 | MS.gene26250:intron | 45.0% | |
| TCAGTTGCTCCAATCAAAGC+TGG | + | chr5.4:58830074-58830093 | MS.gene26250:CDS | 45.0% | |
| TCGATGCATCCTGAAAGATC+GGG | - | chr5.4:58829520-58829539 | None:intergenic | 45.0% | |
| TCTTCAACTGTCTCTCCACT+AGG | - | chr5.4:58828288-58828307 | None:intergenic | 45.0% | |
| TTTGCAGCCTCGTTATCCTT+GGG | + | chr5.4:58828484-58828503 | MS.gene26250:CDS | 45.0% | |
| TTTGGTACAGCTTCTTGGCA+GGG | + | chr5.4:58829043-58829062 | MS.gene26250:intron | 45.0% | |
| ! | ACAACAGAGATTGGTCGTGA+AGG | + | chr5.4:58829602-58829621 | MS.gene26250:CDS | 45.0% |
| ! | CAACAGAGATTGGTCGTGAA+GGG | + | chr5.4:58829603-58829622 | MS.gene26250:CDS | 45.0% |
| ! | CCTTGATGGACAACAGAGAT+TGG | + | chr5.4:58829593-58829612 | MS.gene26250:CDS | 45.0% |
| ! | GCTTTCTTGCTTGCTGAACT+GGG | + | chr5.4:58829558-58829577 | MS.gene26250:CDS | 45.0% |
| ! | TTTTGGTACAGCTTCTTGGC+AGG | + | chr5.4:58829042-58829061 | MS.gene26250:intron | 45.0% |
| !! | CATTCATTAGCCTTCCCTCA+AGG | - | chr5.4:58828399-58828418 | None:intergenic | 45.0% |
| !! | CAATAAATAATATTATAAAT+TGG | + | chr5.4:58829264-58829283 | MS.gene26250:intron | 5.0% |
| !! | CAATTTATAATATTATTTAT+TGG | - | chr5.4:58829266-58829285 | None:intergenic | 5.0% |
| ACCAAGTGGTTTGAAGGAGG+AGG | + | chr5.4:58826924-58826943 | MS.gene26250:CDS | 50.0% | |
| ACCTCCTCCTTCAAACCACT+TGG | - | chr5.4:58826928-58826947 | None:intergenic | 50.0% | |
| AGCCTCGTTATCCTTGGGAA+GGG | + | chr5.4:58828489-58828508 | MS.gene26250:CDS | 50.0% | |
| ATCCAGATCTGGCTGGAGAT+CGG | + | chr5.4:58829090-58829109 | MS.gene26250:CDS | 50.0% | |
| ATCGGCGAAGGACAGTTATG+AGG | + | chr5.4:58829108-58829127 | MS.gene26250:CDS | 50.0% | |
| CACACCGGAGAAAGAAGAGA+CGG | - | chr5.4:58829955-58829974 | None:intergenic | 50.0% | |
| CTGGTTTACTGCTTGCAGTG+TGG | + | chr5.4:58830041-58830060 | MS.gene26250:intron | 50.0% | |
| CTTCTTTCTCCGGTGTGAGA+AGG | + | chr5.4:58829958-58829977 | MS.gene26250:CDS | 50.0% | |
| CTTGCTGAACTGGGTACTAG+TGG | + | chr5.4:58829567-58829586 | MS.gene26250:CDS | 50.0% | |
| CTTTGCAGCCTCGTTATCCT+TGG | + | chr5.4:58828483-58828502 | MS.gene26250:CDS | 50.0% | |
| GAACACAGCTCGTGATCCAA+GGG | - | chr5.4:58828921-58828940 | None:intergenic | 50.0% | |
| GCATTAGCAATCTCCTGGCA+TGG | + | chr5.4:58828002-58828021 | MS.gene26250:intron | 50.0% | |
| GGGATGCATTGTAGTGAGTC+AGG | + | chr5.4:58827451-58827470 | MS.gene26250:intron | 50.0% | |
| GGTACTAGTGGTTCCCTTGA+TGG | + | chr5.4:58829579-58829598 | MS.gene26250:CDS | 50.0% | |
| TACTGCTTGCAGTGTGGATC+AGG | + | chr5.4:58830047-58830066 | MS.gene26250:intron | 50.0% | |
| TGAACACAGCTCGTGATCCA+AGG | - | chr5.4:58828922-58828941 | None:intergenic | 50.0% | |
| TGTGCCTTCACGGAGAACTT+GGG | - | chr5.4:58829138-58829157 | None:intergenic | 50.0% | |
| TTGTGCCTTCACGGAGAACT+TGG | - | chr5.4:58829139-58829158 | None:intergenic | 50.0% | |
| ! | GGCTTTCTTGCTTGCTGAAC+TGG | + | chr5.4:58829557-58829576 | MS.gene26250:CDS | 50.0% |
| ! | GGGACTGACAGTGCATTTTC+TGG | + | chr5.4:58828103-58828122 | MS.gene26250:CDS | 50.0% |
| ! | TTGTTGCTCGTGTTGGCAGA+AGG | + | chr5.4:58830099-58830118 | MS.gene26250:CDS | 50.0% |
| !! | ACTGTTTTGGGCCTTCTGAC+GGG | + | chr5.4:58828757-58828776 | MS.gene26250:intron | 50.0% |
| !! | GACTGTTTTGGGCCTTCTGA+CGG | + | chr5.4:58828756-58828775 | MS.gene26250:intron | 50.0% |
| !!! | GCTGGTTTTGTTGCTCGTGT+TGG | + | chr5.4:58830092-58830111 | MS.gene26250:CDS | 50.0% |
| CAGCCTCGTTATCCTTGGGA+AGG | + | chr5.4:58828488-58828507 | MS.gene26250:CDS | 55.0% | |
| CTCCCTTCCCAAGGATAACG+AGG | - | chr5.4:58828494-58828513 | None:intergenic | 55.0% | |
| GTGCCTTCACGGAGAACTTG+GGG | - | chr5.4:58829137-58829156 | None:intergenic | 55.0% | |
| TCACGATCACTCCCTTCCCA+AGG | - | chr5.4:58828503-58828522 | None:intergenic | 55.0% | |
| TCGACCGCCAGACCATGTTA+TGG | + | chr5.4:58829536-58829555 | MS.gene26250:CDS | 55.0% | |
| TGTTGGCAGAAGGAATGCCG+GGG | + | chr5.4:58830109-58830128 | MS.gene26250:CDS | 55.0% | |
| ! | CGTGTTGGCAGAAGGAATGC+CGG | + | chr5.4:58830107-58830126 | MS.gene26250:CDS | 55.0% |
| ! | GTGTTGGCAGAAGGAATGCC+GGG | + | chr5.4:58830108-58830127 | MS.gene26250:CDS | 55.0% |
| ATCTGGCTGGAGATCGGCGA+AGG | + | chr5.4:58829096-58829115 | MS.gene26250:CDS | 60.0% | |
| CCTCCCCAAGTTCTCCGTGA+AGG | + | chr5.4:58829131-58829150 | MS.gene26250:CDS | 60.0% | |
| CCTTCACGGAGAACTTGGGG+AGG | - | chr5.4:58829134-58829153 | None:intergenic | 60.0% | |
| CGCCGATCTCCAGCCAGATC+TGG | - | chr5.4:58829095-58829114 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 58826910 | 58830136 | 58826910 | ID=MS.gene26250 |
| chr5.4 | mRNA | 58826910 | 58830136 | 58826910 | ID=MS.gene26250.t1;Parent=MS.gene26250 |
| chr5.4 | exon | 58826910 | 58826954 | 58826910 | ID=MS.gene26250.t1.exon1;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58826910 | 58826954 | 58826910 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| chr5.4 | exon | 58827865 | 58827976 | 58827865 | ID=MS.gene26250.t1.exon2;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58827865 | 58827976 | 58827865 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| chr5.4 | exon | 58828095 | 58828150 | 58828095 | ID=MS.gene26250.t1.exon3;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58828095 | 58828150 | 58828095 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| chr5.4 | exon | 58828246 | 58828315 | 58828246 | ID=MS.gene26250.t1.exon4;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58828246 | 58828315 | 58828246 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| chr5.4 | exon | 58828450 | 58828538 | 58828450 | ID=MS.gene26250.t1.exon5;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58828450 | 58828538 | 58828450 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| chr5.4 | exon | 58829053 | 58829198 | 58829053 | ID=MS.gene26250.t1.exon6;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58829053 | 58829198 | 58829053 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| chr5.4 | exon | 58829530 | 58829672 | 58829530 | ID=MS.gene26250.t1.exon7;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58829530 | 58829672 | 58829530 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| chr5.4 | exon | 58829894 | 58829979 | 58829894 | ID=MS.gene26250.t1.exon8;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58829894 | 58829979 | 58829894 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| chr5.4 | exon | 58830059 | 58830136 | 58830059 | ID=MS.gene26250.t1.exon9;Parent=MS.gene26250.t1 |
| chr5.4 | CDS | 58830059 | 58830136 | 58830059 | ID=cds.MS.gene26250.t1;Parent=MS.gene26250.t1 |
| Gene Sequence |
| Protein sequence |
