Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27330.t1 | KEH40108.1 | 99.1 | 649 | 6 | 0 | 1 | 649 | 1 | 649 | 0.00E+00 | 1273.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27330.t1 | Q9FRK5 | 52.3 | 660 | 261 | 14 | 1 | 649 | 1 | 617 | 6.9e-164 | 578.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27330.t1 | A0A072VF81 | 99.1 | 649 | 6 | 0 | 1 | 649 | 1 | 649 | 0.0e+00 | 1273.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049411 | MS.gene27330 | 0.805739 | 1.15E-49 | -1.69E-46 |
MS.gene051234 | MS.gene27330 | 0.81882 | 1.61E-52 | -1.69E-46 |
MS.gene052155 | MS.gene27330 | -0.809356 | 1.97E-50 | -1.69E-46 |
MS.gene054004 | MS.gene27330 | 0.811954 | 5.41E-51 | -1.69E-46 |
MS.gene05859 | MS.gene27330 | 0.808555 | 2.92E-50 | -1.69E-46 |
MS.gene05860 | MS.gene27330 | 0.814933 | 1.20E-51 | -1.69E-46 |
MS.gene05970 | MS.gene27330 | 0.802956 | 4.39E-49 | -1.69E-46 |
MS.gene05971 | MS.gene27330 | 0.804507 | 2.09E-49 | -1.69E-46 |
MS.gene059778 | MS.gene27330 | 0.837943 | 3.86E-57 | -1.69E-46 |
MS.gene059802 | MS.gene27330 | 0.810594 | 1.07E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27330.t1 | MTR_1g022045 | 99.076 | 649 | 6 | 0 | 1 | 649 | 1 | 649 | 0.0 | 1322 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27330.t1 | AT1G75140 | 57.014 | 663 | 225 | 16 | 1 | 649 | 1 | 617 | 0.0 | 691 |
MS.gene27330.t1 | AT1G19370 | 54.795 | 657 | 237 | 16 | 1 | 649 | 1 | 605 | 0.0 | 660 |
Find 152 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGCAGGGTCATTGGATTTA+AGG | 0.156932 | 1.2:+2577287 | MS.gene27330:CDS |
TCTTGCCTTGCAAGCAATTA+AGG | 0.160564 | 1.2:+2577507 | MS.gene27330:CDS |
GCTTATTGTTAACCCTAAAA+AGG | 0.215485 | 1.2:+2577537 | MS.gene27330:CDS |
ATTTGCATCTGCTGTGAAAT+TGG | 0.223785 | 1.2:+2576754 | MS.gene27330:CDS |
AACCCTTCATGATCCTTAAA+AGG | 0.231418 | 1.2:-2576806 | None:intergenic |
TTGAATTCACCTTTATAAAT+AGG | 0.254344 | 1.2:-2577784 | None:intergenic |
TGTAAGTGCTTCCTTCTTCT+TGG | 0.258956 | 1.2:-2577875 | None:intergenic |
GAATGTTGATACATAGAGTT+TGG | 0.278494 | 1.2:+2577002 | MS.gene27330:CDS |
CGATACTAGTGGGAAGATTA+AGG | 0.281011 | 1.2:+2577168 | MS.gene27330:CDS |
ACATGCCATCTCTTCGTTTA+GGG | 0.284583 | 1.2:-2578209 | None:intergenic |
CTCCGACCCTGCTCGAAAAT+CGG | 0.286064 | 1.2:-2578148 | None:intergenic |
GTTGTAACTGGTCATGAAAA+TGG | 0.297865 | 1.2:+2576977 | MS.gene27330:CDS |
TCCAATCTACCTATTTATAA+AGG | 0.304783 | 1.2:+2577775 | MS.gene27330:CDS |
GATTGTATTGAACATGATTC+AGG | 0.304864 | 1.2:-2576404 | None:intergenic |
TTTATTGGATTCACCTATTA+CGG | 0.311308 | 1.2:+2576913 | MS.gene27330:CDS |
GAACATGATTCAGGGCTTAA+AGG | 0.316444 | 1.2:-2576395 | None:intergenic |
AGTTGAGGATGTAGAGTATG+AGG | 0.324989 | 1.2:+2576655 | MS.gene27330:CDS |
AAGTAGGTTTACTCAGATAA+AGG | 0.325958 | 1.2:+2576595 | MS.gene27330:CDS |
AATGAGAGCTTTGTTGTAAC+TGG | 0.327015 | 1.2:+2576965 | MS.gene27330:CDS |
AACATGCCATCTCTTCGTTT+AGG | 0.327521 | 1.2:-2578210 | None:intergenic |
TACGAAACCATCGCCGTAAT+AGG | 0.332437 | 1.2:-2576926 | None:intergenic |
ACCTTTATAAATAGGTAGAT+TGG | 0.335847 | 1.2:-2577776 | None:intergenic |
GGTTGAGTTTGATACTTTAT+TGG | 0.336771 | 1.2:+2576898 | MS.gene27330:CDS |
CTCTGAGAGCTCCACTTCTA+AGG | 0.342609 | 1.2:-2578014 | None:intergenic |
GAATCATCCAACCCCAAGTT+TGG | 0.344833 | 1.2:+2577657 | MS.gene27330:CDS |
TAAATATAGGGCATCAACTA+TGG | 0.349327 | 1.2:+2578173 | MS.gene27330:CDS |
AAAATTATCACTATTTGCTT+TGG | 0.351578 | 1.2:-2576456 | None:intergenic |
TCCCTTGGCATCATCTAGTT+CGG | 0.356192 | 1.2:+2577939 | MS.gene27330:CDS |
TGAAATCTCTCTGACCAAAA+AGG | 0.356568 | 1.2:-2576731 | None:intergenic |
CTTGCTTCGTCATCCAAACT+TGG | 0.358616 | 1.2:-2577670 | None:intergenic |
AACTTGGGGTTGGATGATTC+AGG | 0.362507 | 1.2:-2577654 | None:intergenic |
ATCAGCATCTGGTGCTCCCT+TGG | 0.379867 | 1.2:+2577924 | MS.gene27330:CDS |
CTTGCCTTGCAAGCAATTAA+GGG | 0.383135 | 1.2:+2577508 | MS.gene27330:CDS |
TCCGACCCTGCTCGAAAATC+GGG | 0.383603 | 1.2:-2578147 | None:intergenic |
CGAAGAGATGGCATGTTTGT+AGG | 0.385532 | 1.2:+2578216 | MS.gene27330:CDS |
CTCCTCATTATGTGAGAATC+GGG | 0.386713 | 1.2:+2577581 | MS.gene27330:CDS |
CTTGTTATTGTTGGCCTTGG+AGG | 0.394015 | 1.2:+2577730 | MS.gene27330:CDS |
CGTGAAAAGCTTGTTATTGT+TGG | 0.397360 | 1.2:+2577721 | MS.gene27330:CDS |
AGAAACTGGTGCAGGGTCAT+TGG | 0.398132 | 1.2:+2577279 | MS.gene27330:CDS |
CCCTTGGCATCATCTAGTTC+GGG | 0.401741 | 1.2:+2577940 | MS.gene27330:CDS |
TGCAGGGTCATTGGATTTAA+GGG | 0.401947 | 1.2:+2577288 | MS.gene27330:CDS |
TCTCCTCATTATGTGAGAAT+CGG | 0.413688 | 1.2:+2577580 | MS.gene27330:CDS |
CAGGGTCGGAGATTAAATAT+AGG | 0.418410 | 1.2:+2578160 | MS.gene27330:CDS |
TTGCTTCGTCATCCAAACTT+GGG | 0.426551 | 1.2:-2577669 | None:intergenic |
GATCCCTTGGCATCAGCATC+TGG | 0.428564 | 1.2:+2577913 | MS.gene27330:CDS |
TCAATGGCGGCATCACATAA+AGG | 0.434001 | 1.2:+2576314 | None:intergenic |
GTAGGAGAGCCATACCTTCT+CGG | 0.439682 | 1.2:-2578048 | None:intergenic |
GCTGATGCCAAGGGATCATC+TGG | 0.441468 | 1.2:-2577907 | None:intergenic |
AACATGATTCAGGGCTTAAA+GGG | 0.444442 | 1.2:-2576394 | None:intergenic |
AAGCTTGTTATTGTTGGCCT+TGG | 0.452927 | 1.2:+2577727 | MS.gene27330:CDS |
GAGAATCGGGGTGCCTCGTC+CGG | 0.453539 | 1.2:+2577594 | MS.gene27330:CDS |
AGGGATCGAGCGGAGAGGAT+TGG | 0.453805 | 1.2:+2577026 | MS.gene27330:CDS |
GAGCGGAGAGGATTGGAGTT+CGG | 0.454464 | 1.2:+2577033 | MS.gene27330:CDS |
TGGTTTGGCTATAACTTTGT+TGG | 0.455300 | 1.2:+2577105 | MS.gene27330:CDS |
TTGTAACTGGTCATGAAAAT+GGG | 0.458526 | 1.2:+2576978 | MS.gene27330:CDS |
ACCGTAAGCCTTGGAACGTT+CGG | 0.459264 | 1.2:-2577383 | None:intergenic |
GTTGAGGATGTAGAGTATGA+GGG | 0.463794 | 1.2:+2576656 | MS.gene27330:CDS |
TATGAGGGGAAAGCTCAAAA+TGG | 0.465348 | 1.2:+2576671 | MS.gene27330:CDS |
AGTAGGTTTACTCAGATAAA+GGG | 0.466339 | 1.2:+2576596 | MS.gene27330:CDS |
GCTCCAGCAGGAAACCTTGT+AGG | 0.467929 | 1.2:-2578066 | None:intergenic |
ATGTAATGAACTTCAAATGC+AGG | 0.472022 | 1.2:+2577449 | MS.gene27330:CDS |
TGTGGCAGTTAGCGACGAAA+AGG | 0.473396 | 1.2:+2576838 | MS.gene27330:CDS |
AATGTTGATACATAGAGTTT+GGG | 0.473684 | 1.2:+2577003 | MS.gene27330:CDS |
TTAATTTATGTCTTGTTGCT+TGG | 0.474510 | 1.2:+2577424 | MS.gene27330:CDS |
ACCGAACGTTCCAAGGCTTA+CGG | 0.474666 | 1.2:+2577382 | MS.gene27330:CDS |
CGATGCCACCGAACGTTCCA+AGG | 0.477306 | 1.2:+2577375 | MS.gene27330:CDS |
GTTATTGTTGGCCTTGGAGG+TGG | 0.480940 | 1.2:+2577733 | MS.gene27330:CDS |
AAATCGGGATCAACCGAAGC+TGG | 0.485044 | 1.2:-2578132 | None:intergenic |
TAGGTACTTGCTGCTCCAGC+AGG | 0.488751 | 1.2:-2578078 | None:intergenic |
CCATACCTTCTCGGTGGTGG+TGG | 0.491401 | 1.2:-2578039 | None:intergenic |
AAAAGTACGAAGAACAATAC+AGG | 0.493218 | 1.2:-2577826 | None:intergenic |
ATCAGCAGAACCAAGTCTAT+AGG | 0.499473 | 1.2:-2578097 | None:intergenic |
GGCCTTGGAGGTGGTTATGT+TGG | 0.500374 | 1.2:+2577742 | MS.gene27330:CDS |
GAGCCATACCTTCTCGGTGG+TGG | 0.500633 | 1.2:-2578042 | None:intergenic |
ATTGTATTGAACATGATTCA+GGG | 0.502180 | 1.2:-2576403 | None:intergenic |
AAGAACTTCTGCCGATGTCA+TGG | 0.502840 | 1.2:+2577990 | MS.gene27330:CDS |
TGAAAATCACGAGAATGGTT+TGG | 0.504411 | 1.2:+2577090 | MS.gene27330:CDS |
GGATCAACCGAAGCTGGCCT+AGG | 0.505610 | 1.2:-2578126 | None:intergenic |
AGAAGGAAGCACTTACATCA+TGG | 0.505670 | 1.2:+2577881 | MS.gene27330:CDS |
TTTGAGAAATGGTGATGTGT+TGG | 0.505711 | 1.2:+2576877 | MS.gene27330:CDS |
ATATCCCTTAATTGCTTGCA+AGG | 0.508373 | 1.2:-2577512 | None:intergenic |
AGGGTCGGAGATTAAATATA+GGG | 0.509764 | 1.2:+2578161 | MS.gene27330:CDS |
TCACAATCCTAGGCCAGCTT+CGG | 0.513487 | 1.2:+2578119 | MS.gene27330:CDS |
CCACCACCACCGAGAAGGTA+TGG | 0.519438 | 1.2:+2578039 | MS.gene27330:CDS |
CTTAATCTTCCCACTAGTAT+CGG | 0.520642 | 1.2:-2577167 | None:intergenic |
GTGAATTCAATACCATGCTA+TGG | 0.523841 | 1.2:+2577797 | MS.gene27330:CDS |
GTTCTGTCACTCCGAGTGCT+AGG | 0.526531 | 1.2:+2577218 | MS.gene27330:CDS |
TGACGTAAAACCGTAAGCCT+TGG | 0.532112 | 1.2:-2577392 | None:intergenic |
TCGTCATCCAAACTTGGGGT+TGG | 0.534310 | 1.2:-2577664 | None:intergenic |
ATGGGGACCAGATGATCCCT+TGG | 0.536773 | 1.2:+2577900 | MS.gene27330:CDS |
TGCTTCGTCATCCAAACTTG+GGG | 0.537547 | 1.2:-2577668 | None:intergenic |
TCTCCTACAAGGTTTCCTGC+TGG | 0.544977 | 1.2:+2578063 | MS.gene27330:CDS |
AGCACCAGATGCTGATGCCA+AGG | 0.549033 | 1.2:-2577917 | None:intergenic |
TCACCTGAAAATCACGAGAA+TGG | 0.550569 | 1.2:+2577085 | MS.gene27330:CDS |
TCAATGCTTGAGGAGAAAAC+CGG | 0.551859 | 1.2:-2577613 | None:intergenic |
GAAGGAAGCACTTACATCAT+GGG | 0.552127 | 1.2:+2577882 | MS.gene27330:CDS |
GAAGGTATGGCTCTCCTACA+AGG | 0.552207 | 1.2:+2578052 | MS.gene27330:CDS |
ATCAAAACAACCACAGCAAG+AGG | 0.553985 | 1.2:+2576550 | MS.gene27330:CDS |
TTCAGAAACAGATTCATCGT+TGG | 0.554856 | 1.2:-2576432 | None:intergenic |
GGATTCACCTATTACGGCGA+TGG | 0.555523 | 1.2:+2576919 | MS.gene27330:CDS |
CGAAAACATAACCTCTAGCA+AGG | 0.557604 | 1.2:-2577354 | None:intergenic |
CATAACCTCTAGCAAGGGAA+TGG | 0.558567 | 1.2:-2577348 | None:intergenic |
GCATCAACTATGGATCCTCC+TGG | 0.559135 | 1.2:+2578183 | MS.gene27330:CDS |
AAGTGATAAGAAAGTAGTTG+AGG | 0.559437 | 1.2:+2576640 | MS.gene27330:CDS |
TCAAAATGGTGAGAGAGCTA+AGG | 0.560407 | 1.2:+2576685 | MS.gene27330:CDS |
CTTGAGGAGAAAACCGGACG+AGG | 0.564181 | 1.2:-2577607 | None:intergenic |
AAAACTAACGGCCTAGCACT+CGG | 0.565802 | 1.2:-2577229 | None:intergenic |
TTGAGGATGTAGAGTATGAG+GGG | 0.568107 | 1.2:+2576657 | MS.gene27330:CDS |
GTTCTGCTGATCACAATCCT+AGG | 0.568302 | 1.2:+2578109 | MS.gene27330:CDS |
CAAAATGGTGAGAGAGCTAA+GGG | 0.568442 | 1.2:+2576686 | MS.gene27330:CDS |
ATAAAGGGTGATGTTGATGA+TGG | 0.570149 | 1.2:+2576611 | MS.gene27330:CDS |
GGTTGGATGATTCAGGAATG+AGG | 0.577066 | 1.2:-2577647 | None:intergenic |
ACCCCGATTCTCACATAATG+AGG | 0.578251 | 1.2:-2577583 | None:intergenic |
GTTGATACATAGAGTTTGGG+AGG | 0.579213 | 1.2:+2577006 | MS.gene27330:CDS |
GTGGCAGTTAGCGACGAAAA+GGG | 0.579574 | 1.2:+2576839 | MS.gene27330:CDS |
GAAACAGATTCATCGTTGGA+TGG | 0.583904 | 1.2:-2576428 | None:intergenic |
TGAAGGGTTAAGTAAGTATG+TGG | 0.586429 | 1.2:+2576820 | MS.gene27330:CDS |
CTTTGCTTCAAGAAAACTAA+CGG | 0.587679 | 1.2:-2577241 | None:intergenic |
TTGAACCATTCCCTTGCTAG+AGG | 0.588040 | 1.2:+2577343 | MS.gene27330:CDS |
ACCCGAACTAGATGATGCCA+AGG | 0.588300 | 1.2:-2577941 | None:intergenic |
ACCACAGCAAGAGGTTCCTA+AGG | 0.591540 | 1.2:+2576559 | MS.gene27330:CDS |
TTAATTGCTTGCAAGGCAAG+AGG | 0.592530 | 1.2:-2577505 | None:intergenic |
ACCTTAGGAACCTCTTGCTG+TGG | 0.596633 | 1.2:-2576560 | None:intergenic |
ATTCTATCAGCCGATACTAG+TGG | 0.596692 | 1.2:+2577157 | MS.gene27330:CDS |
TTCTATCAGCCGATACTAGT+GGG | 0.601289 | 1.2:+2577158 | MS.gene27330:CDS |
TCTCTTCGTTTAGGGAAACC+AGG | 0.603540 | 1.2:-2578201 | None:intergenic |
GCACCAGATGCTGATGCCAA+GGG | 0.603889 | 1.2:-2577916 | None:intergenic |
ATTAGAGAATCTGAATGCGA+AGG | 0.604471 | 1.2:+2577319 | MS.gene27330:CDS |
GGTTTCCCTAAACGAAGAGA+TGG | 0.605902 | 1.2:+2578204 | MS.gene27330:CDS |
GCAGGGTCATTGGATTTAAG+GGG | 0.607326 | 1.2:+2577289 | MS.gene27330:CDS |
GATGTCATGGACCTTAGAAG+TGG | 0.608463 | 1.2:+2578003 | MS.gene27330:CDS |
GCAGCAAGTACCTATAGACT+TGG | 0.614298 | 1.2:+2578087 | MS.gene27330:CDS |
GAGGTCCACCACCACCGAGA+AGG | 0.615042 | 1.2:+2578034 | MS.gene27330:CDS |
TCTAAGCTCATCAATGCTTG+AGG | 0.624847 | 1.2:-2577623 | None:intergenic |
ACTTCTAAGGTCCATGACAT+CGG | 0.628592 | 1.2:-2578001 | None:intergenic |
AGAGTTTGGGAGGGATCGAG+CGG | 0.630495 | 1.2:+2577016 | MS.gene27330:CDS |
TTCCAACATAACCACCTCCA+AGG | 0.632050 | 1.2:-2577744 | None:intergenic |
TGTAATGAACTTCAAATGCA+GGG | 0.635592 | 1.2:+2577450 | MS.gene27330:CDS |
TCACGGTCACTAGCTATCAA+CGG | 0.636430 | 1.2:-2577703 | None:intergenic |
GAAAACATAACCTCTAGCAA+GGG | 0.636680 | 1.2:-2577353 | None:intergenic |
TTGATACATAGAGTTTGGGA+GGG | 0.638448 | 1.2:+2577007 | MS.gene27330:CDS |
TACAGGACTAGTCCATAGCA+TGG | 0.656922 | 1.2:-2577809 | None:intergenic |
AAGGAAGCACTTACATCATG+GGG | 0.662135 | 1.2:+2577883 | MS.gene27330:CDS |
CTTAGAAGTGGAGCTCTCAG+AGG | 0.667229 | 1.2:+2578015 | MS.gene27330:CDS |
GTAAGCCTTGGAACGTTCGG+TGG | 0.667431 | 1.2:-2577380 | None:intergenic |
TGTAACTGGTCATGAAAATG+GGG | 0.671239 | 1.2:+2576979 | MS.gene27330:CDS |
TTGGGAGGGATCGAGCGGAG+AGG | 0.684923 | 1.2:+2577021 | MS.gene27330:CDS |
TCCTCATTATGTGAGAATCG+GGG | 0.695613 | 1.2:+2577582 | MS.gene27330:CDS |
CCCGAACTAGATGATGCCAA+GGG | 0.697441 | 1.2:-2577940 | None:intergenic |
GGAGAGCCATACCTTCTCGG+TGG | 0.704913 | 1.2:-2578045 | None:intergenic |
CTTCGTTTAGGGAAACCAGG+AGG | 0.758900 | 1.2:-2578198 | None:intergenic |
GTAACTGGTCATGAAAATGG+GGG | 0.767450 | 1.2:+2576980 | MS.gene27330:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTATCACTATTTGCTT+TGG | - | chr1.2:2576459-2576478 | None:intergenic | 20.0% |
!! | ATACAAGAAAAAGTTTGAAA+TGG | + | chr1.2:2577477-2577496 | MS.gene27330:CDS | 20.0% |
!! | TTGAATTCACCTTTATAAAT+AGG | - | chr1.2:2577787-2577806 | None:intergenic | 20.0% |
!!! | TAAACACAAAAACCTTTTTA+GGG | - | chr1.2:2577552-2577571 | None:intergenic | 20.0% |
!!! | TATAAATGTTTTGCCTTTTA+AGG | + | chr1.2:2576793-2576812 | MS.gene27330:CDS | 20.0% |
!!! | TTAAACACAAAAACCTTTTT+AGG | - | chr1.2:2577553-2577572 | None:intergenic | 20.0% |
! | AATGTTGATACATAGAGTTT+GGG | + | chr1.2:2577003-2577022 | MS.gene27330:CDS | 25.0% |
! | ACCTTTATAAATAGGTAGAT+TGG | - | chr1.2:2577779-2577798 | None:intergenic | 25.0% |
! | ATTGTATTGAACATGATTCA+GGG | - | chr1.2:2576406-2576425 | None:intergenic | 25.0% |
! | TCCAATCTACCTATTTATAA+AGG | + | chr1.2:2577775-2577794 | MS.gene27330:CDS | 25.0% |
! | TTTATTGGATTCACCTATTA+CGG | + | chr1.2:2576913-2576932 | MS.gene27330:CDS | 25.0% |
!! | CAAGATTTTTATCTTCTGTT+TGG | + | chr1.2:2576337-2576356 | MS.gene27330:CDS | 25.0% |
!! | TTAATTTATGTCTTGTTGCT+TGG | + | chr1.2:2577424-2577443 | MS.gene27330:CDS | 25.0% |
!!! | GTTTATGTGTTTTTGAGAAA+TGG | + | chr1.2:2576866-2576885 | MS.gene27330:CDS | 25.0% |
AAGTAGGTTTACTCAGATAA+AGG | + | chr1.2:2576595-2576614 | MS.gene27330:CDS | 30.0% | |
AAGTGATAAGAAAGTAGTTG+AGG | + | chr1.2:2576640-2576659 | MS.gene27330:CDS | 30.0% | |
AGGTTGTTCAAGAAAAAAGT+AGG | + | chr1.2:2576579-2576598 | MS.gene27330:CDS | 30.0% | |
AGTAGGTTTACTCAGATAAA+GGG | + | chr1.2:2576596-2576615 | MS.gene27330:CDS | 30.0% | |
ATGTAATGAACTTCAAATGC+AGG | + | chr1.2:2577449-2577468 | MS.gene27330:CDS | 30.0% | |
CTTTGCTTCAAGAAAACTAA+CGG | - | chr1.2:2577244-2577263 | None:intergenic | 30.0% | |
GAATGTTGATACATAGAGTT+TGG | + | chr1.2:2577002-2577021 | MS.gene27330:CDS | 30.0% | |
GATTGTATTGAACATGATTC+AGG | - | chr1.2:2576407-2576426 | None:intergenic | 30.0% | |
GCTTATTGTTAACCCTAAAA+AGG | + | chr1.2:2577537-2577556 | MS.gene27330:CDS | 30.0% | |
GGTTGAGTTTGATACTTTAT+TGG | + | chr1.2:2576898-2576917 | MS.gene27330:CDS | 30.0% | |
TGTAATGAACTTCAAATGCA+GGG | + | chr1.2:2577450-2577469 | MS.gene27330:CDS | 30.0% | |
TTGTAACTGGTCATGAAAAT+GGG | + | chr1.2:2576978-2576997 | MS.gene27330:CDS | 30.0% | |
! | AAAAGTACGAAGAACAATAC+AGG | - | chr1.2:2577829-2577848 | None:intergenic | 30.0% |
! | CAACAATAACAAGCTTTTCA+CGG | - | chr1.2:2577723-2577742 | None:intergenic | 30.0% |
! | TAAATATAGGGCATCAACTA+TGG | + | chr1.2:2578173-2578192 | MS.gene27330:CDS | 30.0% |
! | TCGGTTTTTATGGAAAATGT+CGG | + | chr1.2:2577052-2577071 | MS.gene27330:CDS | 30.0% |
! | TGGGAAGATTAAGGTTTTTA+AGG | + | chr1.2:2577177-2577196 | MS.gene27330:CDS | 30.0% |
! | TGTTGGAAGTTCATTTTGTA+GGG | + | chr1.2:2577122-2577141 | MS.gene27330:CDS | 30.0% |
! | TTCTTCGTACTTTTCCTATT+CGG | + | chr1.2:2577835-2577854 | MS.gene27330:CDS | 30.0% |
! | TTGTTGGAAGTTCATTTTGT+AGG | + | chr1.2:2577121-2577140 | MS.gene27330:CDS | 30.0% |
!! | CTTATGTTTTTGACAGAAAC+TGG | + | chr1.2:2577265-2577284 | MS.gene27330:CDS | 30.0% |
!!! | CTTTTTTCTTGAACAACCTT+AGG | - | chr1.2:2576578-2576597 | None:intergenic | 30.0% |
AACATGATTCAGGGCTTAAA+GGG | - | chr1.2:2576397-2576416 | None:intergenic | 35.0% | |
AACCCTTCATGATCCTTAAA+AGG | - | chr1.2:2576809-2576828 | None:intergenic | 35.0% | |
AGGGTCGGAGATTAAATATA+GGG | + | chr1.2:2578161-2578180 | MS.gene27330:CDS | 35.0% | |
ATATCCCTTAATTGCTTGCA+AGG | - | chr1.2:2577515-2577534 | None:intergenic | 35.0% | |
ATTAGAGAATCTGAATGCGA+AGG | + | chr1.2:2577319-2577338 | MS.gene27330:CDS | 35.0% | |
ATTTGCATCTGCTGTGAAAT+TGG | + | chr1.2:2576754-2576773 | MS.gene27330:CDS | 35.0% | |
CTTAATCTTCCCACTAGTAT+CGG | - | chr1.2:2577170-2577189 | None:intergenic | 35.0% | |
GAAAACATAACCTCTAGCAA+GGG | - | chr1.2:2577356-2577375 | None:intergenic | 35.0% | |
GTGAATTCAATACCATGCTA+TGG | + | chr1.2:2577797-2577816 | MS.gene27330:CDS | 35.0% | |
GTTGTAACTGGTCATGAAAA+TGG | + | chr1.2:2576977-2576996 | MS.gene27330:CDS | 35.0% | |
TCTCCTCATTATGTGAGAAT+CGG | + | chr1.2:2577580-2577599 | MS.gene27330:CDS | 35.0% | |
TGAAAATCACGAGAATGGTT+TGG | + | chr1.2:2577090-2577109 | MS.gene27330:CDS | 35.0% | |
TGAAATCTCTCTGACCAAAA+AGG | - | chr1.2:2576734-2576753 | None:intergenic | 35.0% | |
TGAAGGGTTAAGTAAGTATG+TGG | + | chr1.2:2576820-2576839 | MS.gene27330:CDS | 35.0% | |
TGTAACTGGTCATGAAAATG+GGG | + | chr1.2:2576979-2576998 | MS.gene27330:CDS | 35.0% | |
TTCAGAAACAGATTCATCGT+TGG | - | chr1.2:2576435-2576454 | None:intergenic | 35.0% | |
TTGATACATAGAGTTTGGGA+GGG | + | chr1.2:2577007-2577026 | MS.gene27330:CDS | 35.0% | |
! | AAACCATTCTCGTGATTTTC+AGG | - | chr1.2:2577091-2577110 | None:intergenic | 35.0% |
! | AAGGAAAGCAGTGTGTTTTA+TGG | + | chr1.2:2577196-2577215 | MS.gene27330:CDS | 35.0% |
! | ATAAAGGGTGATGTTGATGA+TGG | + | chr1.2:2576611-2576630 | MS.gene27330:CDS | 35.0% |
! | TGACCAAAAAGGAGTATACT+TGG | - | chr1.2:2576723-2576742 | None:intergenic | 35.0% |
! | TGACCAAGTATACTCCTTTT+TGG | + | chr1.2:2576717-2576736 | MS.gene27330:CDS | 35.0% |
! | TGGTTTGGCTATAACTTTGT+TGG | + | chr1.2:2577105-2577124 | MS.gene27330:CDS | 35.0% |
! | TTTGAGAAATGGTGATGTGT+TGG | + | chr1.2:2576877-2576896 | MS.gene27330:CDS | 35.0% |
!! | AATGAGAGCTTTGTTGTAAC+TGG | + | chr1.2:2576965-2576984 | MS.gene27330:CDS | 35.0% |
!! | CGTGAAAAGCTTGTTATTGT+TGG | + | chr1.2:2577721-2577740 | MS.gene27330:CDS | 35.0% |
!! | TGCCTTTTAAGGATCATGAA+GGG | + | chr1.2:2576804-2576823 | MS.gene27330:CDS | 35.0% |
!! | TTGCCTTTTAAGGATCATGA+AGG | + | chr1.2:2576803-2576822 | MS.gene27330:CDS | 35.0% |
!!! | CGTTAGTTTTCTTGAAGCAA+AGG | + | chr1.2:2577242-2577261 | MS.gene27330:CDS | 35.0% |
!!! | GCATTTTTTTGCCAAGAAGA+AGG | + | chr1.2:2577864-2577883 | MS.gene27330:CDS | 35.0% |
AACATGCCATCTCTTCGTTT+AGG | - | chr1.2:2578213-2578232 | None:intergenic | 40.0% | |
ACATGCCATCTCTTCGTTTA+GGG | - | chr1.2:2578212-2578231 | None:intergenic | 40.0% | |
AGTTGAGGATGTAGAGTATG+AGG | + | chr1.2:2576655-2576674 | MS.gene27330:CDS | 40.0% | |
ATCAAAACAACCACAGCAAG+AGG | + | chr1.2:2576550-2576569 | MS.gene27330:CDS | 40.0% | |
ATCAGCAGAACCAAGTCTAT+AGG | - | chr1.2:2578100-2578119 | None:intergenic | 40.0% | |
ATTCTATCAGCCGATACTAG+TGG | + | chr1.2:2577157-2577176 | MS.gene27330:CDS | 40.0% | |
CAAAATGGTGAGAGAGCTAA+GGG | + | chr1.2:2576686-2576705 | MS.gene27330:CDS | 40.0% | |
CAGGGTCGGAGATTAAATAT+AGG | + | chr1.2:2578160-2578179 | MS.gene27330:CDS | 40.0% | |
CGAAAACATAACCTCTAGCA+AGG | - | chr1.2:2577357-2577376 | None:intergenic | 40.0% | |
CGATACTAGTGGGAAGATTA+AGG | + | chr1.2:2577168-2577187 | MS.gene27330:CDS | 40.0% | |
CTCCTCATTATGTGAGAATC+GGG | + | chr1.2:2577581-2577600 | MS.gene27330:CDS | 40.0% | |
CTTGCCTTGCAAGCAATTAA+GGG | + | chr1.2:2577508-2577527 | MS.gene27330:CDS | 40.0% | |
GAAACAGATTCATCGTTGGA+TGG | - | chr1.2:2576431-2576450 | None:intergenic | 40.0% | |
GAACATGATTCAGGGCTTAA+AGG | - | chr1.2:2576398-2576417 | None:intergenic | 40.0% | |
GTAACTGGTCATGAAAATGG+GGG | + | chr1.2:2576980-2576999 | MS.gene27330:CDS | 40.0% | |
GTTGAGGATGTAGAGTATGA+GGG | + | chr1.2:2576656-2576675 | MS.gene27330:CDS | 40.0% | |
GTTGATACATAGAGTTTGGG+AGG | + | chr1.2:2577006-2577025 | MS.gene27330:CDS | 40.0% | |
TATGAGGGGAAAGCTCAAAA+TGG | + | chr1.2:2576671-2576690 | MS.gene27330:CDS | 40.0% | |
TCAAAATGGTGAGAGAGCTA+AGG | + | chr1.2:2576685-2576704 | MS.gene27330:CDS | 40.0% | |
TCAATGCTTGAGGAGAAAAC+CGG | - | chr1.2:2577616-2577635 | None:intergenic | 40.0% | |
TCACCTGAAAATCACGAGAA+TGG | + | chr1.2:2577085-2577104 | MS.gene27330:CDS | 40.0% | |
TCCTCATTATGTGAGAATCG+GGG | + | chr1.2:2577582-2577601 | MS.gene27330:CDS | 40.0% | |
TCTAAGCTCATCAATGCTTG+AGG | - | chr1.2:2577626-2577645 | None:intergenic | 40.0% | |
TCTTGCCTTGCAAGCAATTA+AGG | + | chr1.2:2577507-2577526 | MS.gene27330:CDS | 40.0% | |
TGCAGGGTCATTGGATTTAA+GGG | + | chr1.2:2577288-2577307 | MS.gene27330:CDS | 40.0% | |
TGTAAGTGCTTCCTTCTTCT+TGG | - | chr1.2:2577878-2577897 | None:intergenic | 40.0% | |
TTAATTGCTTGCAAGGCAAG+AGG | - | chr1.2:2577508-2577527 | None:intergenic | 40.0% | |
TTCTATCAGCCGATACTAGT+GGG | + | chr1.2:2577158-2577177 | MS.gene27330:CDS | 40.0% | |
TTGAGGATGTAGAGTATGAG+GGG | + | chr1.2:2576657-2576676 | MS.gene27330:CDS | 40.0% | |
TTGCTTCGTCATCCAAACTT+GGG | - | chr1.2:2577672-2577691 | None:intergenic | 40.0% | |
! | GGATTGGAGTTCGGTTTTTA+TGG | + | chr1.2:2577042-2577061 | MS.gene27330:CDS | 40.0% |
! | TGGAAGTTCATTTTGTAGGG+AGG | + | chr1.2:2577125-2577144 | MS.gene27330:CDS | 40.0% |
! | TTTTGACAGAAACTGGTGCA+GGG | + | chr1.2:2577272-2577291 | MS.gene27330:CDS | 40.0% |
! | TTTTTGACAGAAACTGGTGC+AGG | + | chr1.2:2577271-2577290 | MS.gene27330:CDS | 40.0% |
!! | AAAAATGCCAAGCACCGAAT+AGG | - | chr1.2:2577852-2577871 | None:intergenic | 40.0% |
!! | AAGCTTGTTATTGTTGGCCT+TGG | + | chr1.2:2577727-2577746 | MS.gene27330:CDS | 40.0% |
!! | AAGGAAGCACTTACATCATG+GGG | + | chr1.2:2577883-2577902 | MS.gene27330:CDS | 40.0% |
!! | ACTTCTAAGGTCCATGACAT+CGG | - | chr1.2:2578004-2578023 | None:intergenic | 40.0% |
!! | AGAAGGAAGCACTTACATCA+TGG | + | chr1.2:2577881-2577900 | MS.gene27330:CDS | 40.0% |
!! | GAAGGAAGCACTTACATCAT+GGG | + | chr1.2:2577882-2577901 | MS.gene27330:CDS | 40.0% |
!!! | TACTTTTCCTATTCGGTGCT+TGG | + | chr1.2:2577842-2577861 | MS.gene27330:CDS | 40.0% |
AAAACTAACGGCCTAGCACT+CGG | - | chr1.2:2577232-2577251 | None:intergenic | 45.0% | |
AACTTGGGGTTGGATGATTC+AGG | - | chr1.2:2577657-2577676 | None:intergenic | 45.0% | |
AAGAACTTCTGCCGATGTCA+TGG | + | chr1.2:2577990-2578009 | MS.gene27330:CDS | 45.0% | |
ACCCCGATTCTCACATAATG+AGG | - | chr1.2:2577586-2577605 | None:intergenic | 45.0% | |
CATAACCTCTAGCAAGGGAA+TGG | - | chr1.2:2577351-2577370 | None:intergenic | 45.0% | |
CGAAGAGATGGCATGTTTGT+AGG | + | chr1.2:2578216-2578235 | MS.gene27330:CDS | 45.0% | |
CTTGCTTCGTCATCCAAACT+TGG | - | chr1.2:2577673-2577692 | None:intergenic | 45.0% | |
GAATCATCCAACCCCAAGTT+TGG | + | chr1.2:2577657-2577676 | MS.gene27330:CDS | 45.0% | |
GATGTCATGGACCTTAGAAG+TGG | + | chr1.2:2578003-2578022 | MS.gene27330:CDS | 45.0% | |
GCAGCAAGTACCTATAGACT+TGG | + | chr1.2:2578087-2578106 | MS.gene27330:CDS | 45.0% | |
GCAGGGTCATTGGATTTAAG+GGG | + | chr1.2:2577289-2577308 | MS.gene27330:CDS | 45.0% | |
GGTTGGATGATTCAGGAATG+AGG | - | chr1.2:2577650-2577669 | None:intergenic | 45.0% | |
GGTTTCCCTAAACGAAGAGA+TGG | + | chr1.2:2578204-2578223 | MS.gene27330:CDS | 45.0% | |
GTGCAGGGTCATTGGATTTA+AGG | + | chr1.2:2577287-2577306 | MS.gene27330:CDS | 45.0% | |
GTTCTGCTGATCACAATCCT+AGG | + | chr1.2:2578109-2578128 | MS.gene27330:CDS | 45.0% | |
TACGAAACCATCGCCGTAAT+AGG | - | chr1.2:2576929-2576948 | None:intergenic | 45.0% | |
TCACGGTCACTAGCTATCAA+CGG | - | chr1.2:2577706-2577725 | None:intergenic | 45.0% | |
TCCCTTGGCATCATCTAGTT+CGG | + | chr1.2:2577939-2577958 | MS.gene27330:CDS | 45.0% | |
TCTCTTCGTTTAGGGAAACC+AGG | - | chr1.2:2578204-2578223 | None:intergenic | 45.0% | |
TGACGTAAAACCGTAAGCCT+TGG | - | chr1.2:2577395-2577414 | None:intergenic | 45.0% | |
TGCTTCGTCATCCAAACTTG+GGG | - | chr1.2:2577671-2577690 | None:intergenic | 45.0% | |
TTCCAACATAACCACCTCCA+AGG | - | chr1.2:2577747-2577766 | None:intergenic | 45.0% | |
TTGAACCATTCCCTTGCTAG+AGG | + | chr1.2:2577343-2577362 | MS.gene27330:CDS | 45.0% | |
! | GCTTACGGTTTTACGTCAGA+TGG | + | chr1.2:2577397-2577416 | MS.gene27330:CDS | 45.0% |
!! | CTTGTTATTGTTGGCCTTGG+AGG | + | chr1.2:2577730-2577749 | MS.gene27330:CDS | 45.0% |
!! | TACAGGACTAGTCCATAGCA+TGG | - | chr1.2:2577812-2577831 | None:intergenic | 45.0% |
!! | TTGATCCCGATTTTCGAGCA+GGG | + | chr1.2:2578142-2578161 | MS.gene27330:CDS | 45.0% |
AAATCGGGATCAACCGAAGC+TGG | - | chr1.2:2578135-2578154 | None:intergenic | 50.0% | |
ACCACAGCAAGAGGTTCCTA+AGG | + | chr1.2:2576559-2576578 | MS.gene27330:CDS | 50.0% | |
ACCCGAACTAGATGATGCCA+AGG | - | chr1.2:2577944-2577963 | None:intergenic | 50.0% | |
ACCGAACGTTCCAAGGCTTA+CGG | + | chr1.2:2577382-2577401 | MS.gene27330:CDS | 50.0% | |
ACCGTAAGCCTTGGAACGTT+CGG | - | chr1.2:2577386-2577405 | None:intergenic | 50.0% | |
ACCTTAGGAACCTCTTGCTG+TGG | - | chr1.2:2576563-2576582 | None:intergenic | 50.0% | |
AGAAACTGGTGCAGGGTCAT+TGG | + | chr1.2:2577279-2577298 | MS.gene27330:CDS | 50.0% | |
CCCGAACTAGATGATGCCAA+GGG | - | chr1.2:2577943-2577962 | None:intergenic | 50.0% | |
CTTAGAAGTGGAGCTCTCAG+AGG | + | chr1.2:2578015-2578034 | MS.gene27330:CDS | 50.0% | |
CTTCGTTTAGGGAAACCAGG+AGG | - | chr1.2:2578201-2578220 | None:intergenic | 50.0% | |
GCATCAACTATGGATCCTCC+TGG | + | chr1.2:2578183-2578202 | MS.gene27330:CDS | 50.0% | |
GGATTCACCTATTACGGCGA+TGG | + | chr1.2:2576919-2576938 | MS.gene27330:CDS | 50.0% | |
GTAGGAGAGCCATACCTTCT+CGG | - | chr1.2:2578051-2578070 | None:intergenic | 50.0% | |
GTGGCAGTTAGCGACGAAAA+GGG | + | chr1.2:2576839-2576858 | MS.gene27330:CDS | 50.0% | |
TCACAATCCTAGGCCAGCTT+CGG | + | chr1.2:2578119-2578138 | MS.gene27330:CDS | 50.0% | |
TCGTCATCCAAACTTGGGGT+TGG | - | chr1.2:2577667-2577686 | None:intergenic | 50.0% | |
TCTCCTACAAGGTTTCCTGC+TGG | + | chr1.2:2578063-2578082 | MS.gene27330:CDS | 50.0% | |
TGTGGCAGTTAGCGACGAAA+AGG | + | chr1.2:2576838-2576857 | MS.gene27330:CDS | 50.0% | |
! | CCCTTGGCATCATCTAGTTC+GGG | + | chr1.2:2577940-2577959 | MS.gene27330:CDS | 50.0% |
! | CTCTGAGAGCTCCACTTCTA+AGG | - | chr1.2:2578017-2578036 | None:intergenic | 50.0% |
! | GAAGGTATGGCTCTCCTACA+AGG | + | chr1.2:2578052-2578071 | MS.gene27330:CDS | 50.0% |
!! | GTTATTGTTGGCCTTGGAGG+TGG | + | chr1.2:2577733-2577752 | MS.gene27330:CDS | 50.0% |
!! | GTTGATCCCGATTTTCGAGC+AGG | + | chr1.2:2578141-2578160 | MS.gene27330:CDS | 50.0% |
AGAGTTTGGGAGGGATCGAG+CGG | + | chr1.2:2577016-2577035 | MS.gene27330:CDS | 55.0% | |
AGCACCAGATGCTGATGCCA+AGG | - | chr1.2:2577920-2577939 | None:intergenic | 55.0% | |
ATCAGCATCTGGTGCTCCCT+TGG | + | chr1.2:2577924-2577943 | MS.gene27330:CDS | 55.0% | |
ATGGGGACCAGATGATCCCT+TGG | + | chr1.2:2577900-2577919 | MS.gene27330:CDS | 55.0% | |
CTCCGACCCTGCTCGAAAAT+CGG | - | chr1.2:2578151-2578170 | None:intergenic | 55.0% | |
CTTGAGGAGAAAACCGGACG+AGG | - | chr1.2:2577610-2577629 | None:intergenic | 55.0% | |
GAGCGGAGAGGATTGGAGTT+CGG | + | chr1.2:2577033-2577052 | MS.gene27330:CDS | 55.0% | |
GATCCCTTGGCATCAGCATC+TGG | + | chr1.2:2577913-2577932 | MS.gene27330:CDS | 55.0% | |
GCACCAGATGCTGATGCCAA+GGG | - | chr1.2:2577919-2577938 | None:intergenic | 55.0% | |
GCTCCAGCAGGAAACCTTGT+AGG | - | chr1.2:2578069-2578088 | None:intergenic | 55.0% | |
GCTGATGCCAAGGGATCATC+TGG | - | chr1.2:2577910-2577929 | None:intergenic | 55.0% | |
GGCCTTGGAGGTGGTTATGT+TGG | + | chr1.2:2577742-2577761 | MS.gene27330:CDS | 55.0% | |
GTAAGCCTTGGAACGTTCGG+TGG | - | chr1.2:2577383-2577402 | None:intergenic | 55.0% | |
GTTCTGTCACTCCGAGTGCT+AGG | + | chr1.2:2577218-2577237 | MS.gene27330:CDS | 55.0% | |
TCCGACCCTGCTCGAAAATC+GGG | - | chr1.2:2578150-2578169 | None:intergenic | 55.0% | |
! | TAGGTACTTGCTGCTCCAGC+AGG | - | chr1.2:2578081-2578100 | None:intergenic | 55.0% |
!! | TCCCGATTTTCGAGCAGGGT+CGG | + | chr1.2:2578146-2578165 | MS.gene27330:CDS | 55.0% |
AGGGATCGAGCGGAGAGGAT+TGG | + | chr1.2:2577026-2577045 | MS.gene27330:CDS | 60.0% | |
CCACCACCACCGAGAAGGTA+TGG | + | chr1.2:2578039-2578058 | MS.gene27330:CDS | 60.0% | |
CGATGCCACCGAACGTTCCA+AGG | + | chr1.2:2577375-2577394 | MS.gene27330:CDS | 60.0% | |
GAGCCATACCTTCTCGGTGG+TGG | - | chr1.2:2578045-2578064 | None:intergenic | 60.0% | |
GGAGAGCCATACCTTCTCGG+TGG | - | chr1.2:2578048-2578067 | None:intergenic | 60.0% | |
! | CCATACCTTCTCGGTGGTGG+TGG | - | chr1.2:2578042-2578061 | None:intergenic | 60.0% |
! | GGATCAACCGAAGCTGGCCT+AGG | - | chr1.2:2578129-2578148 | None:intergenic | 60.0% |
GAGGTCCACCACCACCGAGA+AGG | + | chr1.2:2578034-2578053 | MS.gene27330:CDS | 65.0% | |
TTGGGAGGGATCGAGCGGAG+AGG | + | chr1.2:2577021-2577040 | MS.gene27330:CDS | 65.0% | |
! | GAGAATCGGGGTGCCTCGTC+CGG | + | chr1.2:2577594-2577613 | MS.gene27330:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 2576317 | 2578266 | 2576317 | ID=MS.gene27330 |
chr1.2 | mRNA | 2576317 | 2578266 | 2576317 | ID=MS.gene27330.t1;Parent=MS.gene27330 |
chr1.2 | exon | 2576317 | 2578266 | 2576317 | ID=MS.gene27330.t1.exon1;Parent=MS.gene27330.t1 |
chr1.2 | CDS | 2576317 | 2578266 | 2576317 | ID=cds.MS.gene27330.t1;Parent=MS.gene27330.t1 |
Gene Sequence |
Protein sequence |