AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27330.t1 MTR_1g022045 99.076 649 6 0 1 649 1 649 0.0 1322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27330.t1 AT1G75140 57.014 663 225 16 1 649 1 617 0.0 691
MS.gene27330.t1 AT1G19370 54.795 657 237 16 1 649 1 605 0.0 660

Find 152 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCAGGGTCATTGGATTTA+AGG 0.156932 1.2:+2577287 MS.gene27330:CDS
TCTTGCCTTGCAAGCAATTA+AGG 0.160564 1.2:+2577507 MS.gene27330:CDS
GCTTATTGTTAACCCTAAAA+AGG 0.215485 1.2:+2577537 MS.gene27330:CDS
ATTTGCATCTGCTGTGAAAT+TGG 0.223785 1.2:+2576754 MS.gene27330:CDS
AACCCTTCATGATCCTTAAA+AGG 0.231418 1.2:-2576806 None:intergenic
TTGAATTCACCTTTATAAAT+AGG 0.254344 1.2:-2577784 None:intergenic
TGTAAGTGCTTCCTTCTTCT+TGG 0.258956 1.2:-2577875 None:intergenic
GAATGTTGATACATAGAGTT+TGG 0.278494 1.2:+2577002 MS.gene27330:CDS
CGATACTAGTGGGAAGATTA+AGG 0.281011 1.2:+2577168 MS.gene27330:CDS
ACATGCCATCTCTTCGTTTA+GGG 0.284583 1.2:-2578209 None:intergenic
CTCCGACCCTGCTCGAAAAT+CGG 0.286064 1.2:-2578148 None:intergenic
GTTGTAACTGGTCATGAAAA+TGG 0.297865 1.2:+2576977 MS.gene27330:CDS
TCCAATCTACCTATTTATAA+AGG 0.304783 1.2:+2577775 MS.gene27330:CDS
GATTGTATTGAACATGATTC+AGG 0.304864 1.2:-2576404 None:intergenic
TTTATTGGATTCACCTATTA+CGG 0.311308 1.2:+2576913 MS.gene27330:CDS
GAACATGATTCAGGGCTTAA+AGG 0.316444 1.2:-2576395 None:intergenic
AGTTGAGGATGTAGAGTATG+AGG 0.324989 1.2:+2576655 MS.gene27330:CDS
AAGTAGGTTTACTCAGATAA+AGG 0.325958 1.2:+2576595 MS.gene27330:CDS
AATGAGAGCTTTGTTGTAAC+TGG 0.327015 1.2:+2576965 MS.gene27330:CDS
AACATGCCATCTCTTCGTTT+AGG 0.327521 1.2:-2578210 None:intergenic
TACGAAACCATCGCCGTAAT+AGG 0.332437 1.2:-2576926 None:intergenic
ACCTTTATAAATAGGTAGAT+TGG 0.335847 1.2:-2577776 None:intergenic
GGTTGAGTTTGATACTTTAT+TGG 0.336771 1.2:+2576898 MS.gene27330:CDS
CTCTGAGAGCTCCACTTCTA+AGG 0.342609 1.2:-2578014 None:intergenic
GAATCATCCAACCCCAAGTT+TGG 0.344833 1.2:+2577657 MS.gene27330:CDS
TAAATATAGGGCATCAACTA+TGG 0.349327 1.2:+2578173 MS.gene27330:CDS
AAAATTATCACTATTTGCTT+TGG 0.351578 1.2:-2576456 None:intergenic
TCCCTTGGCATCATCTAGTT+CGG 0.356192 1.2:+2577939 MS.gene27330:CDS
TGAAATCTCTCTGACCAAAA+AGG 0.356568 1.2:-2576731 None:intergenic
CTTGCTTCGTCATCCAAACT+TGG 0.358616 1.2:-2577670 None:intergenic
AACTTGGGGTTGGATGATTC+AGG 0.362507 1.2:-2577654 None:intergenic
ATCAGCATCTGGTGCTCCCT+TGG 0.379867 1.2:+2577924 MS.gene27330:CDS
CTTGCCTTGCAAGCAATTAA+GGG 0.383135 1.2:+2577508 MS.gene27330:CDS
TCCGACCCTGCTCGAAAATC+GGG 0.383603 1.2:-2578147 None:intergenic
CGAAGAGATGGCATGTTTGT+AGG 0.385532 1.2:+2578216 MS.gene27330:CDS
CTCCTCATTATGTGAGAATC+GGG 0.386713 1.2:+2577581 MS.gene27330:CDS
CTTGTTATTGTTGGCCTTGG+AGG 0.394015 1.2:+2577730 MS.gene27330:CDS
CGTGAAAAGCTTGTTATTGT+TGG 0.397360 1.2:+2577721 MS.gene27330:CDS
AGAAACTGGTGCAGGGTCAT+TGG 0.398132 1.2:+2577279 MS.gene27330:CDS
CCCTTGGCATCATCTAGTTC+GGG 0.401741 1.2:+2577940 MS.gene27330:CDS
TGCAGGGTCATTGGATTTAA+GGG 0.401947 1.2:+2577288 MS.gene27330:CDS
TCTCCTCATTATGTGAGAAT+CGG 0.413688 1.2:+2577580 MS.gene27330:CDS
CAGGGTCGGAGATTAAATAT+AGG 0.418410 1.2:+2578160 MS.gene27330:CDS
TTGCTTCGTCATCCAAACTT+GGG 0.426551 1.2:-2577669 None:intergenic
GATCCCTTGGCATCAGCATC+TGG 0.428564 1.2:+2577913 MS.gene27330:CDS
TCAATGGCGGCATCACATAA+AGG 0.434001 1.2:+2576314 None:intergenic
GTAGGAGAGCCATACCTTCT+CGG 0.439682 1.2:-2578048 None:intergenic
GCTGATGCCAAGGGATCATC+TGG 0.441468 1.2:-2577907 None:intergenic
AACATGATTCAGGGCTTAAA+GGG 0.444442 1.2:-2576394 None:intergenic
AAGCTTGTTATTGTTGGCCT+TGG 0.452927 1.2:+2577727 MS.gene27330:CDS
GAGAATCGGGGTGCCTCGTC+CGG 0.453539 1.2:+2577594 MS.gene27330:CDS
AGGGATCGAGCGGAGAGGAT+TGG 0.453805 1.2:+2577026 MS.gene27330:CDS
GAGCGGAGAGGATTGGAGTT+CGG 0.454464 1.2:+2577033 MS.gene27330:CDS
TGGTTTGGCTATAACTTTGT+TGG 0.455300 1.2:+2577105 MS.gene27330:CDS
TTGTAACTGGTCATGAAAAT+GGG 0.458526 1.2:+2576978 MS.gene27330:CDS
ACCGTAAGCCTTGGAACGTT+CGG 0.459264 1.2:-2577383 None:intergenic
GTTGAGGATGTAGAGTATGA+GGG 0.463794 1.2:+2576656 MS.gene27330:CDS
TATGAGGGGAAAGCTCAAAA+TGG 0.465348 1.2:+2576671 MS.gene27330:CDS
AGTAGGTTTACTCAGATAAA+GGG 0.466339 1.2:+2576596 MS.gene27330:CDS
GCTCCAGCAGGAAACCTTGT+AGG 0.467929 1.2:-2578066 None:intergenic
ATGTAATGAACTTCAAATGC+AGG 0.472022 1.2:+2577449 MS.gene27330:CDS
TGTGGCAGTTAGCGACGAAA+AGG 0.473396 1.2:+2576838 MS.gene27330:CDS
AATGTTGATACATAGAGTTT+GGG 0.473684 1.2:+2577003 MS.gene27330:CDS
TTAATTTATGTCTTGTTGCT+TGG 0.474510 1.2:+2577424 MS.gene27330:CDS
ACCGAACGTTCCAAGGCTTA+CGG 0.474666 1.2:+2577382 MS.gene27330:CDS
CGATGCCACCGAACGTTCCA+AGG 0.477306 1.2:+2577375 MS.gene27330:CDS
GTTATTGTTGGCCTTGGAGG+TGG 0.480940 1.2:+2577733 MS.gene27330:CDS
AAATCGGGATCAACCGAAGC+TGG 0.485044 1.2:-2578132 None:intergenic
TAGGTACTTGCTGCTCCAGC+AGG 0.488751 1.2:-2578078 None:intergenic
CCATACCTTCTCGGTGGTGG+TGG 0.491401 1.2:-2578039 None:intergenic
AAAAGTACGAAGAACAATAC+AGG 0.493218 1.2:-2577826 None:intergenic
ATCAGCAGAACCAAGTCTAT+AGG 0.499473 1.2:-2578097 None:intergenic
GGCCTTGGAGGTGGTTATGT+TGG 0.500374 1.2:+2577742 MS.gene27330:CDS
GAGCCATACCTTCTCGGTGG+TGG 0.500633 1.2:-2578042 None:intergenic
ATTGTATTGAACATGATTCA+GGG 0.502180 1.2:-2576403 None:intergenic
AAGAACTTCTGCCGATGTCA+TGG 0.502840 1.2:+2577990 MS.gene27330:CDS
TGAAAATCACGAGAATGGTT+TGG 0.504411 1.2:+2577090 MS.gene27330:CDS
GGATCAACCGAAGCTGGCCT+AGG 0.505610 1.2:-2578126 None:intergenic
AGAAGGAAGCACTTACATCA+TGG 0.505670 1.2:+2577881 MS.gene27330:CDS
TTTGAGAAATGGTGATGTGT+TGG 0.505711 1.2:+2576877 MS.gene27330:CDS
ATATCCCTTAATTGCTTGCA+AGG 0.508373 1.2:-2577512 None:intergenic
AGGGTCGGAGATTAAATATA+GGG 0.509764 1.2:+2578161 MS.gene27330:CDS
TCACAATCCTAGGCCAGCTT+CGG 0.513487 1.2:+2578119 MS.gene27330:CDS
CCACCACCACCGAGAAGGTA+TGG 0.519438 1.2:+2578039 MS.gene27330:CDS
CTTAATCTTCCCACTAGTAT+CGG 0.520642 1.2:-2577167 None:intergenic
GTGAATTCAATACCATGCTA+TGG 0.523841 1.2:+2577797 MS.gene27330:CDS
GTTCTGTCACTCCGAGTGCT+AGG 0.526531 1.2:+2577218 MS.gene27330:CDS
TGACGTAAAACCGTAAGCCT+TGG 0.532112 1.2:-2577392 None:intergenic
TCGTCATCCAAACTTGGGGT+TGG 0.534310 1.2:-2577664 None:intergenic
ATGGGGACCAGATGATCCCT+TGG 0.536773 1.2:+2577900 MS.gene27330:CDS
TGCTTCGTCATCCAAACTTG+GGG 0.537547 1.2:-2577668 None:intergenic
TCTCCTACAAGGTTTCCTGC+TGG 0.544977 1.2:+2578063 MS.gene27330:CDS
AGCACCAGATGCTGATGCCA+AGG 0.549033 1.2:-2577917 None:intergenic
TCACCTGAAAATCACGAGAA+TGG 0.550569 1.2:+2577085 MS.gene27330:CDS
TCAATGCTTGAGGAGAAAAC+CGG 0.551859 1.2:-2577613 None:intergenic
GAAGGAAGCACTTACATCAT+GGG 0.552127 1.2:+2577882 MS.gene27330:CDS
GAAGGTATGGCTCTCCTACA+AGG 0.552207 1.2:+2578052 MS.gene27330:CDS
ATCAAAACAACCACAGCAAG+AGG 0.553985 1.2:+2576550 MS.gene27330:CDS
TTCAGAAACAGATTCATCGT+TGG 0.554856 1.2:-2576432 None:intergenic
GGATTCACCTATTACGGCGA+TGG 0.555523 1.2:+2576919 MS.gene27330:CDS
CGAAAACATAACCTCTAGCA+AGG 0.557604 1.2:-2577354 None:intergenic
CATAACCTCTAGCAAGGGAA+TGG 0.558567 1.2:-2577348 None:intergenic
GCATCAACTATGGATCCTCC+TGG 0.559135 1.2:+2578183 MS.gene27330:CDS
AAGTGATAAGAAAGTAGTTG+AGG 0.559437 1.2:+2576640 MS.gene27330:CDS
TCAAAATGGTGAGAGAGCTA+AGG 0.560407 1.2:+2576685 MS.gene27330:CDS
CTTGAGGAGAAAACCGGACG+AGG 0.564181 1.2:-2577607 None:intergenic
AAAACTAACGGCCTAGCACT+CGG 0.565802 1.2:-2577229 None:intergenic
TTGAGGATGTAGAGTATGAG+GGG 0.568107 1.2:+2576657 MS.gene27330:CDS
GTTCTGCTGATCACAATCCT+AGG 0.568302 1.2:+2578109 MS.gene27330:CDS
CAAAATGGTGAGAGAGCTAA+GGG 0.568442 1.2:+2576686 MS.gene27330:CDS
ATAAAGGGTGATGTTGATGA+TGG 0.570149 1.2:+2576611 MS.gene27330:CDS
GGTTGGATGATTCAGGAATG+AGG 0.577066 1.2:-2577647 None:intergenic
ACCCCGATTCTCACATAATG+AGG 0.578251 1.2:-2577583 None:intergenic
GTTGATACATAGAGTTTGGG+AGG 0.579213 1.2:+2577006 MS.gene27330:CDS
GTGGCAGTTAGCGACGAAAA+GGG 0.579574 1.2:+2576839 MS.gene27330:CDS
GAAACAGATTCATCGTTGGA+TGG 0.583904 1.2:-2576428 None:intergenic
TGAAGGGTTAAGTAAGTATG+TGG 0.586429 1.2:+2576820 MS.gene27330:CDS
CTTTGCTTCAAGAAAACTAA+CGG 0.587679 1.2:-2577241 None:intergenic
TTGAACCATTCCCTTGCTAG+AGG 0.588040 1.2:+2577343 MS.gene27330:CDS
ACCCGAACTAGATGATGCCA+AGG 0.588300 1.2:-2577941 None:intergenic
ACCACAGCAAGAGGTTCCTA+AGG 0.591540 1.2:+2576559 MS.gene27330:CDS
TTAATTGCTTGCAAGGCAAG+AGG 0.592530 1.2:-2577505 None:intergenic
ACCTTAGGAACCTCTTGCTG+TGG 0.596633 1.2:-2576560 None:intergenic
ATTCTATCAGCCGATACTAG+TGG 0.596692 1.2:+2577157 MS.gene27330:CDS
TTCTATCAGCCGATACTAGT+GGG 0.601289 1.2:+2577158 MS.gene27330:CDS
TCTCTTCGTTTAGGGAAACC+AGG 0.603540 1.2:-2578201 None:intergenic
GCACCAGATGCTGATGCCAA+GGG 0.603889 1.2:-2577916 None:intergenic
ATTAGAGAATCTGAATGCGA+AGG 0.604471 1.2:+2577319 MS.gene27330:CDS
GGTTTCCCTAAACGAAGAGA+TGG 0.605902 1.2:+2578204 MS.gene27330:CDS
GCAGGGTCATTGGATTTAAG+GGG 0.607326 1.2:+2577289 MS.gene27330:CDS
GATGTCATGGACCTTAGAAG+TGG 0.608463 1.2:+2578003 MS.gene27330:CDS
GCAGCAAGTACCTATAGACT+TGG 0.614298 1.2:+2578087 MS.gene27330:CDS
GAGGTCCACCACCACCGAGA+AGG 0.615042 1.2:+2578034 MS.gene27330:CDS
TCTAAGCTCATCAATGCTTG+AGG 0.624847 1.2:-2577623 None:intergenic
ACTTCTAAGGTCCATGACAT+CGG 0.628592 1.2:-2578001 None:intergenic
AGAGTTTGGGAGGGATCGAG+CGG 0.630495 1.2:+2577016 MS.gene27330:CDS
TTCCAACATAACCACCTCCA+AGG 0.632050 1.2:-2577744 None:intergenic
TGTAATGAACTTCAAATGCA+GGG 0.635592 1.2:+2577450 MS.gene27330:CDS
TCACGGTCACTAGCTATCAA+CGG 0.636430 1.2:-2577703 None:intergenic
GAAAACATAACCTCTAGCAA+GGG 0.636680 1.2:-2577353 None:intergenic
TTGATACATAGAGTTTGGGA+GGG 0.638448 1.2:+2577007 MS.gene27330:CDS
TACAGGACTAGTCCATAGCA+TGG 0.656922 1.2:-2577809 None:intergenic
AAGGAAGCACTTACATCATG+GGG 0.662135 1.2:+2577883 MS.gene27330:CDS
CTTAGAAGTGGAGCTCTCAG+AGG 0.667229 1.2:+2578015 MS.gene27330:CDS
GTAAGCCTTGGAACGTTCGG+TGG 0.667431 1.2:-2577380 None:intergenic
TGTAACTGGTCATGAAAATG+GGG 0.671239 1.2:+2576979 MS.gene27330:CDS
TTGGGAGGGATCGAGCGGAG+AGG 0.684923 1.2:+2577021 MS.gene27330:CDS
TCCTCATTATGTGAGAATCG+GGG 0.695613 1.2:+2577582 MS.gene27330:CDS
CCCGAACTAGATGATGCCAA+GGG 0.697441 1.2:-2577940 None:intergenic
GGAGAGCCATACCTTCTCGG+TGG 0.704913 1.2:-2578045 None:intergenic
CTTCGTTTAGGGAAACCAGG+AGG 0.758900 1.2:-2578198 None:intergenic
GTAACTGGTCATGAAAATGG+GGG 0.767450 1.2:+2576980 MS.gene27330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATCACTATTTGCTT+TGG - chr1.2:2576459-2576478 None:intergenic 20.0%
!! ATACAAGAAAAAGTTTGAAA+TGG + chr1.2:2577477-2577496 MS.gene27330:CDS 20.0%
!! TTGAATTCACCTTTATAAAT+AGG - chr1.2:2577787-2577806 None:intergenic 20.0%
!!! TAAACACAAAAACCTTTTTA+GGG - chr1.2:2577552-2577571 None:intergenic 20.0%
!!! TATAAATGTTTTGCCTTTTA+AGG + chr1.2:2576793-2576812 MS.gene27330:CDS 20.0%
!!! TTAAACACAAAAACCTTTTT+AGG - chr1.2:2577553-2577572 None:intergenic 20.0%
! AATGTTGATACATAGAGTTT+GGG + chr1.2:2577003-2577022 MS.gene27330:CDS 25.0%
! ACCTTTATAAATAGGTAGAT+TGG - chr1.2:2577779-2577798 None:intergenic 25.0%
! ATTGTATTGAACATGATTCA+GGG - chr1.2:2576406-2576425 None:intergenic 25.0%
! TCCAATCTACCTATTTATAA+AGG + chr1.2:2577775-2577794 MS.gene27330:CDS 25.0%
! TTTATTGGATTCACCTATTA+CGG + chr1.2:2576913-2576932 MS.gene27330:CDS 25.0%
!! CAAGATTTTTATCTTCTGTT+TGG + chr1.2:2576337-2576356 MS.gene27330:CDS 25.0%
!! TTAATTTATGTCTTGTTGCT+TGG + chr1.2:2577424-2577443 MS.gene27330:CDS 25.0%
!!! GTTTATGTGTTTTTGAGAAA+TGG + chr1.2:2576866-2576885 MS.gene27330:CDS 25.0%
AAGTAGGTTTACTCAGATAA+AGG + chr1.2:2576595-2576614 MS.gene27330:CDS 30.0%
AAGTGATAAGAAAGTAGTTG+AGG + chr1.2:2576640-2576659 MS.gene27330:CDS 30.0%
AGGTTGTTCAAGAAAAAAGT+AGG + chr1.2:2576579-2576598 MS.gene27330:CDS 30.0%
AGTAGGTTTACTCAGATAAA+GGG + chr1.2:2576596-2576615 MS.gene27330:CDS 30.0%
ATGTAATGAACTTCAAATGC+AGG + chr1.2:2577449-2577468 MS.gene27330:CDS 30.0%
CTTTGCTTCAAGAAAACTAA+CGG - chr1.2:2577244-2577263 None:intergenic 30.0%
GAATGTTGATACATAGAGTT+TGG + chr1.2:2577002-2577021 MS.gene27330:CDS 30.0%
GATTGTATTGAACATGATTC+AGG - chr1.2:2576407-2576426 None:intergenic 30.0%
GCTTATTGTTAACCCTAAAA+AGG + chr1.2:2577537-2577556 MS.gene27330:CDS 30.0%
GGTTGAGTTTGATACTTTAT+TGG + chr1.2:2576898-2576917 MS.gene27330:CDS 30.0%
TGTAATGAACTTCAAATGCA+GGG + chr1.2:2577450-2577469 MS.gene27330:CDS 30.0%
TTGTAACTGGTCATGAAAAT+GGG + chr1.2:2576978-2576997 MS.gene27330:CDS 30.0%
! AAAAGTACGAAGAACAATAC+AGG - chr1.2:2577829-2577848 None:intergenic 30.0%
! CAACAATAACAAGCTTTTCA+CGG - chr1.2:2577723-2577742 None:intergenic 30.0%
! TAAATATAGGGCATCAACTA+TGG + chr1.2:2578173-2578192 MS.gene27330:CDS 30.0%
! TCGGTTTTTATGGAAAATGT+CGG + chr1.2:2577052-2577071 MS.gene27330:CDS 30.0%
! TGGGAAGATTAAGGTTTTTA+AGG + chr1.2:2577177-2577196 MS.gene27330:CDS 30.0%
! TGTTGGAAGTTCATTTTGTA+GGG + chr1.2:2577122-2577141 MS.gene27330:CDS 30.0%
! TTCTTCGTACTTTTCCTATT+CGG + chr1.2:2577835-2577854 MS.gene27330:CDS 30.0%
! TTGTTGGAAGTTCATTTTGT+AGG + chr1.2:2577121-2577140 MS.gene27330:CDS 30.0%
!! CTTATGTTTTTGACAGAAAC+TGG + chr1.2:2577265-2577284 MS.gene27330:CDS 30.0%
!!! CTTTTTTCTTGAACAACCTT+AGG - chr1.2:2576578-2576597 None:intergenic 30.0%
AACATGATTCAGGGCTTAAA+GGG - chr1.2:2576397-2576416 None:intergenic 35.0%
AACCCTTCATGATCCTTAAA+AGG - chr1.2:2576809-2576828 None:intergenic 35.0%
AGGGTCGGAGATTAAATATA+GGG + chr1.2:2578161-2578180 MS.gene27330:CDS 35.0%
ATATCCCTTAATTGCTTGCA+AGG - chr1.2:2577515-2577534 None:intergenic 35.0%
ATTAGAGAATCTGAATGCGA+AGG + chr1.2:2577319-2577338 MS.gene27330:CDS 35.0%
ATTTGCATCTGCTGTGAAAT+TGG + chr1.2:2576754-2576773 MS.gene27330:CDS 35.0%
CTTAATCTTCCCACTAGTAT+CGG - chr1.2:2577170-2577189 None:intergenic 35.0%
GAAAACATAACCTCTAGCAA+GGG - chr1.2:2577356-2577375 None:intergenic 35.0%
GTGAATTCAATACCATGCTA+TGG + chr1.2:2577797-2577816 MS.gene27330:CDS 35.0%
GTTGTAACTGGTCATGAAAA+TGG + chr1.2:2576977-2576996 MS.gene27330:CDS 35.0%
TCTCCTCATTATGTGAGAAT+CGG + chr1.2:2577580-2577599 MS.gene27330:CDS 35.0%
TGAAAATCACGAGAATGGTT+TGG + chr1.2:2577090-2577109 MS.gene27330:CDS 35.0%
TGAAATCTCTCTGACCAAAA+AGG - chr1.2:2576734-2576753 None:intergenic 35.0%
TGAAGGGTTAAGTAAGTATG+TGG + chr1.2:2576820-2576839 MS.gene27330:CDS 35.0%
TGTAACTGGTCATGAAAATG+GGG + chr1.2:2576979-2576998 MS.gene27330:CDS 35.0%
TTCAGAAACAGATTCATCGT+TGG - chr1.2:2576435-2576454 None:intergenic 35.0%
TTGATACATAGAGTTTGGGA+GGG + chr1.2:2577007-2577026 MS.gene27330:CDS 35.0%
! AAACCATTCTCGTGATTTTC+AGG - chr1.2:2577091-2577110 None:intergenic 35.0%
! AAGGAAAGCAGTGTGTTTTA+TGG + chr1.2:2577196-2577215 MS.gene27330:CDS 35.0%
! ATAAAGGGTGATGTTGATGA+TGG + chr1.2:2576611-2576630 MS.gene27330:CDS 35.0%
! TGACCAAAAAGGAGTATACT+TGG - chr1.2:2576723-2576742 None:intergenic 35.0%
! TGACCAAGTATACTCCTTTT+TGG + chr1.2:2576717-2576736 MS.gene27330:CDS 35.0%
! TGGTTTGGCTATAACTTTGT+TGG + chr1.2:2577105-2577124 MS.gene27330:CDS 35.0%
! TTTGAGAAATGGTGATGTGT+TGG + chr1.2:2576877-2576896 MS.gene27330:CDS 35.0%
!! AATGAGAGCTTTGTTGTAAC+TGG + chr1.2:2576965-2576984 MS.gene27330:CDS 35.0%
!! CGTGAAAAGCTTGTTATTGT+TGG + chr1.2:2577721-2577740 MS.gene27330:CDS 35.0%
!! TGCCTTTTAAGGATCATGAA+GGG + chr1.2:2576804-2576823 MS.gene27330:CDS 35.0%
!! TTGCCTTTTAAGGATCATGA+AGG + chr1.2:2576803-2576822 MS.gene27330:CDS 35.0%
!!! CGTTAGTTTTCTTGAAGCAA+AGG + chr1.2:2577242-2577261 MS.gene27330:CDS 35.0%
!!! GCATTTTTTTGCCAAGAAGA+AGG + chr1.2:2577864-2577883 MS.gene27330:CDS 35.0%
AACATGCCATCTCTTCGTTT+AGG - chr1.2:2578213-2578232 None:intergenic 40.0%
ACATGCCATCTCTTCGTTTA+GGG - chr1.2:2578212-2578231 None:intergenic 40.0%
AGTTGAGGATGTAGAGTATG+AGG + chr1.2:2576655-2576674 MS.gene27330:CDS 40.0%
ATCAAAACAACCACAGCAAG+AGG + chr1.2:2576550-2576569 MS.gene27330:CDS 40.0%
ATCAGCAGAACCAAGTCTAT+AGG - chr1.2:2578100-2578119 None:intergenic 40.0%
ATTCTATCAGCCGATACTAG+TGG + chr1.2:2577157-2577176 MS.gene27330:CDS 40.0%
CAAAATGGTGAGAGAGCTAA+GGG + chr1.2:2576686-2576705 MS.gene27330:CDS 40.0%
CAGGGTCGGAGATTAAATAT+AGG + chr1.2:2578160-2578179 MS.gene27330:CDS 40.0%
CGAAAACATAACCTCTAGCA+AGG - chr1.2:2577357-2577376 None:intergenic 40.0%
CGATACTAGTGGGAAGATTA+AGG + chr1.2:2577168-2577187 MS.gene27330:CDS 40.0%
CTCCTCATTATGTGAGAATC+GGG + chr1.2:2577581-2577600 MS.gene27330:CDS 40.0%
CTTGCCTTGCAAGCAATTAA+GGG + chr1.2:2577508-2577527 MS.gene27330:CDS 40.0%
GAAACAGATTCATCGTTGGA+TGG - chr1.2:2576431-2576450 None:intergenic 40.0%
GAACATGATTCAGGGCTTAA+AGG - chr1.2:2576398-2576417 None:intergenic 40.0%
GTAACTGGTCATGAAAATGG+GGG + chr1.2:2576980-2576999 MS.gene27330:CDS 40.0%
GTTGAGGATGTAGAGTATGA+GGG + chr1.2:2576656-2576675 MS.gene27330:CDS 40.0%
GTTGATACATAGAGTTTGGG+AGG + chr1.2:2577006-2577025 MS.gene27330:CDS 40.0%
TATGAGGGGAAAGCTCAAAA+TGG + chr1.2:2576671-2576690 MS.gene27330:CDS 40.0%
TCAAAATGGTGAGAGAGCTA+AGG + chr1.2:2576685-2576704 MS.gene27330:CDS 40.0%
TCAATGCTTGAGGAGAAAAC+CGG - chr1.2:2577616-2577635 None:intergenic 40.0%
TCACCTGAAAATCACGAGAA+TGG + chr1.2:2577085-2577104 MS.gene27330:CDS 40.0%
TCCTCATTATGTGAGAATCG+GGG + chr1.2:2577582-2577601 MS.gene27330:CDS 40.0%
TCTAAGCTCATCAATGCTTG+AGG - chr1.2:2577626-2577645 None:intergenic 40.0%
TCTTGCCTTGCAAGCAATTA+AGG + chr1.2:2577507-2577526 MS.gene27330:CDS 40.0%
TGCAGGGTCATTGGATTTAA+GGG + chr1.2:2577288-2577307 MS.gene27330:CDS 40.0%
TGTAAGTGCTTCCTTCTTCT+TGG - chr1.2:2577878-2577897 None:intergenic 40.0%
TTAATTGCTTGCAAGGCAAG+AGG - chr1.2:2577508-2577527 None:intergenic 40.0%
TTCTATCAGCCGATACTAGT+GGG + chr1.2:2577158-2577177 MS.gene27330:CDS 40.0%
TTGAGGATGTAGAGTATGAG+GGG + chr1.2:2576657-2576676 MS.gene27330:CDS 40.0%
TTGCTTCGTCATCCAAACTT+GGG - chr1.2:2577672-2577691 None:intergenic 40.0%
! GGATTGGAGTTCGGTTTTTA+TGG + chr1.2:2577042-2577061 MS.gene27330:CDS 40.0%
! TGGAAGTTCATTTTGTAGGG+AGG + chr1.2:2577125-2577144 MS.gene27330:CDS 40.0%
! TTTTGACAGAAACTGGTGCA+GGG + chr1.2:2577272-2577291 MS.gene27330:CDS 40.0%
! TTTTTGACAGAAACTGGTGC+AGG + chr1.2:2577271-2577290 MS.gene27330:CDS 40.0%
!! AAAAATGCCAAGCACCGAAT+AGG - chr1.2:2577852-2577871 None:intergenic 40.0%
!! AAGCTTGTTATTGTTGGCCT+TGG + chr1.2:2577727-2577746 MS.gene27330:CDS 40.0%
!! AAGGAAGCACTTACATCATG+GGG + chr1.2:2577883-2577902 MS.gene27330:CDS 40.0%
!! ACTTCTAAGGTCCATGACAT+CGG - chr1.2:2578004-2578023 None:intergenic 40.0%
!! AGAAGGAAGCACTTACATCA+TGG + chr1.2:2577881-2577900 MS.gene27330:CDS 40.0%
!! GAAGGAAGCACTTACATCAT+GGG + chr1.2:2577882-2577901 MS.gene27330:CDS 40.0%
!!! TACTTTTCCTATTCGGTGCT+TGG + chr1.2:2577842-2577861 MS.gene27330:CDS 40.0%
AAAACTAACGGCCTAGCACT+CGG - chr1.2:2577232-2577251 None:intergenic 45.0%
AACTTGGGGTTGGATGATTC+AGG - chr1.2:2577657-2577676 None:intergenic 45.0%
AAGAACTTCTGCCGATGTCA+TGG + chr1.2:2577990-2578009 MS.gene27330:CDS 45.0%
ACCCCGATTCTCACATAATG+AGG - chr1.2:2577586-2577605 None:intergenic 45.0%
CATAACCTCTAGCAAGGGAA+TGG - chr1.2:2577351-2577370 None:intergenic 45.0%
CGAAGAGATGGCATGTTTGT+AGG + chr1.2:2578216-2578235 MS.gene27330:CDS 45.0%
CTTGCTTCGTCATCCAAACT+TGG - chr1.2:2577673-2577692 None:intergenic 45.0%
GAATCATCCAACCCCAAGTT+TGG + chr1.2:2577657-2577676 MS.gene27330:CDS 45.0%
GATGTCATGGACCTTAGAAG+TGG + chr1.2:2578003-2578022 MS.gene27330:CDS 45.0%
GCAGCAAGTACCTATAGACT+TGG + chr1.2:2578087-2578106 MS.gene27330:CDS 45.0%
GCAGGGTCATTGGATTTAAG+GGG + chr1.2:2577289-2577308 MS.gene27330:CDS 45.0%
GGTTGGATGATTCAGGAATG+AGG - chr1.2:2577650-2577669 None:intergenic 45.0%
GGTTTCCCTAAACGAAGAGA+TGG + chr1.2:2578204-2578223 MS.gene27330:CDS 45.0%
GTGCAGGGTCATTGGATTTA+AGG + chr1.2:2577287-2577306 MS.gene27330:CDS 45.0%
GTTCTGCTGATCACAATCCT+AGG + chr1.2:2578109-2578128 MS.gene27330:CDS 45.0%
TACGAAACCATCGCCGTAAT+AGG - chr1.2:2576929-2576948 None:intergenic 45.0%
TCACGGTCACTAGCTATCAA+CGG - chr1.2:2577706-2577725 None:intergenic 45.0%
TCCCTTGGCATCATCTAGTT+CGG + chr1.2:2577939-2577958 MS.gene27330:CDS 45.0%
TCTCTTCGTTTAGGGAAACC+AGG - chr1.2:2578204-2578223 None:intergenic 45.0%
TGACGTAAAACCGTAAGCCT+TGG - chr1.2:2577395-2577414 None:intergenic 45.0%
TGCTTCGTCATCCAAACTTG+GGG - chr1.2:2577671-2577690 None:intergenic 45.0%
TTCCAACATAACCACCTCCA+AGG - chr1.2:2577747-2577766 None:intergenic 45.0%
TTGAACCATTCCCTTGCTAG+AGG + chr1.2:2577343-2577362 MS.gene27330:CDS 45.0%
! GCTTACGGTTTTACGTCAGA+TGG + chr1.2:2577397-2577416 MS.gene27330:CDS 45.0%
!! CTTGTTATTGTTGGCCTTGG+AGG + chr1.2:2577730-2577749 MS.gene27330:CDS 45.0%
!! TACAGGACTAGTCCATAGCA+TGG - chr1.2:2577812-2577831 None:intergenic 45.0%
!! TTGATCCCGATTTTCGAGCA+GGG + chr1.2:2578142-2578161 MS.gene27330:CDS 45.0%
AAATCGGGATCAACCGAAGC+TGG - chr1.2:2578135-2578154 None:intergenic 50.0%
ACCACAGCAAGAGGTTCCTA+AGG + chr1.2:2576559-2576578 MS.gene27330:CDS 50.0%
ACCCGAACTAGATGATGCCA+AGG - chr1.2:2577944-2577963 None:intergenic 50.0%
ACCGAACGTTCCAAGGCTTA+CGG + chr1.2:2577382-2577401 MS.gene27330:CDS 50.0%
ACCGTAAGCCTTGGAACGTT+CGG - chr1.2:2577386-2577405 None:intergenic 50.0%
ACCTTAGGAACCTCTTGCTG+TGG - chr1.2:2576563-2576582 None:intergenic 50.0%
AGAAACTGGTGCAGGGTCAT+TGG + chr1.2:2577279-2577298 MS.gene27330:CDS 50.0%
CCCGAACTAGATGATGCCAA+GGG - chr1.2:2577943-2577962 None:intergenic 50.0%
CTTAGAAGTGGAGCTCTCAG+AGG + chr1.2:2578015-2578034 MS.gene27330:CDS 50.0%
CTTCGTTTAGGGAAACCAGG+AGG - chr1.2:2578201-2578220 None:intergenic 50.0%
GCATCAACTATGGATCCTCC+TGG + chr1.2:2578183-2578202 MS.gene27330:CDS 50.0%
GGATTCACCTATTACGGCGA+TGG + chr1.2:2576919-2576938 MS.gene27330:CDS 50.0%
GTAGGAGAGCCATACCTTCT+CGG - chr1.2:2578051-2578070 None:intergenic 50.0%
GTGGCAGTTAGCGACGAAAA+GGG + chr1.2:2576839-2576858 MS.gene27330:CDS 50.0%
TCACAATCCTAGGCCAGCTT+CGG + chr1.2:2578119-2578138 MS.gene27330:CDS 50.0%
TCGTCATCCAAACTTGGGGT+TGG - chr1.2:2577667-2577686 None:intergenic 50.0%
TCTCCTACAAGGTTTCCTGC+TGG + chr1.2:2578063-2578082 MS.gene27330:CDS 50.0%
TGTGGCAGTTAGCGACGAAA+AGG + chr1.2:2576838-2576857 MS.gene27330:CDS 50.0%
! CCCTTGGCATCATCTAGTTC+GGG + chr1.2:2577940-2577959 MS.gene27330:CDS 50.0%
! CTCTGAGAGCTCCACTTCTA+AGG - chr1.2:2578017-2578036 None:intergenic 50.0%
! GAAGGTATGGCTCTCCTACA+AGG + chr1.2:2578052-2578071 MS.gene27330:CDS 50.0%
!! GTTATTGTTGGCCTTGGAGG+TGG + chr1.2:2577733-2577752 MS.gene27330:CDS 50.0%
!! GTTGATCCCGATTTTCGAGC+AGG + chr1.2:2578141-2578160 MS.gene27330:CDS 50.0%
AGAGTTTGGGAGGGATCGAG+CGG + chr1.2:2577016-2577035 MS.gene27330:CDS 55.0%
AGCACCAGATGCTGATGCCA+AGG - chr1.2:2577920-2577939 None:intergenic 55.0%
ATCAGCATCTGGTGCTCCCT+TGG + chr1.2:2577924-2577943 MS.gene27330:CDS 55.0%
ATGGGGACCAGATGATCCCT+TGG + chr1.2:2577900-2577919 MS.gene27330:CDS 55.0%
CTCCGACCCTGCTCGAAAAT+CGG - chr1.2:2578151-2578170 None:intergenic 55.0%
CTTGAGGAGAAAACCGGACG+AGG - chr1.2:2577610-2577629 None:intergenic 55.0%
GAGCGGAGAGGATTGGAGTT+CGG + chr1.2:2577033-2577052 MS.gene27330:CDS 55.0%
GATCCCTTGGCATCAGCATC+TGG + chr1.2:2577913-2577932 MS.gene27330:CDS 55.0%
GCACCAGATGCTGATGCCAA+GGG - chr1.2:2577919-2577938 None:intergenic 55.0%
GCTCCAGCAGGAAACCTTGT+AGG - chr1.2:2578069-2578088 None:intergenic 55.0%
GCTGATGCCAAGGGATCATC+TGG - chr1.2:2577910-2577929 None:intergenic 55.0%
GGCCTTGGAGGTGGTTATGT+TGG + chr1.2:2577742-2577761 MS.gene27330:CDS 55.0%
GTAAGCCTTGGAACGTTCGG+TGG - chr1.2:2577383-2577402 None:intergenic 55.0%
GTTCTGTCACTCCGAGTGCT+AGG + chr1.2:2577218-2577237 MS.gene27330:CDS 55.0%
TCCGACCCTGCTCGAAAATC+GGG - chr1.2:2578150-2578169 None:intergenic 55.0%
! TAGGTACTTGCTGCTCCAGC+AGG - chr1.2:2578081-2578100 None:intergenic 55.0%
!! TCCCGATTTTCGAGCAGGGT+CGG + chr1.2:2578146-2578165 MS.gene27330:CDS 55.0%
AGGGATCGAGCGGAGAGGAT+TGG + chr1.2:2577026-2577045 MS.gene27330:CDS 60.0%
CCACCACCACCGAGAAGGTA+TGG + chr1.2:2578039-2578058 MS.gene27330:CDS 60.0%
CGATGCCACCGAACGTTCCA+AGG + chr1.2:2577375-2577394 MS.gene27330:CDS 60.0%
GAGCCATACCTTCTCGGTGG+TGG - chr1.2:2578045-2578064 None:intergenic 60.0%
GGAGAGCCATACCTTCTCGG+TGG - chr1.2:2578048-2578067 None:intergenic 60.0%
! CCATACCTTCTCGGTGGTGG+TGG - chr1.2:2578042-2578061 None:intergenic 60.0%
! GGATCAACCGAAGCTGGCCT+AGG - chr1.2:2578129-2578148 None:intergenic 60.0%
GAGGTCCACCACCACCGAGA+AGG + chr1.2:2578034-2578053 MS.gene27330:CDS 65.0%
TTGGGAGGGATCGAGCGGAG+AGG + chr1.2:2577021-2577040 MS.gene27330:CDS 65.0%
! GAGAATCGGGGTGCCTCGTC+CGG + chr1.2:2577594-2577613 MS.gene27330:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 2576317 2578266 2576317 ID=MS.gene27330
chr1.2 mRNA 2576317 2578266 2576317 ID=MS.gene27330.t1;Parent=MS.gene27330
chr1.2 exon 2576317 2578266 2576317 ID=MS.gene27330.t1.exon1;Parent=MS.gene27330.t1
chr1.2 CDS 2576317 2578266 2576317 ID=cds.MS.gene27330.t1;Parent=MS.gene27330.t1
Gene Sequence

>MS.gene27330

ATGGCGGCATCACATAAAGGCAAGATTTTTATCTTCTGTTTGGTATTATTTTTATCTTTTCTTTATGTTTCTAGTGACCCTTTAAGCCCTGAATCATGTTCAATACAATCACCATCCAACGATGAATCTGTTTCTGAATCCAAAGCAAATAGTGATAATTTTAATCAACAAGTTTTGTTGAATAAGCTTGAAGAGTTAGTGAGAAATCTAAGTGATATAGTTGCAAGATTAGAATCAAAACAACCACAGCAAGAGGTTCCTAAGGTTGTTCAAGAAAAAAGTAGGTTTACTCAGATAAAGGGTGATGTTGATGATGGAAGATCAAGTGATAAGAAAGTAGTTGAGGATGTAGAGTATGAGGGGAAAGCTCAAAATGGTGAGAGAGCTAAGGGAATGTCTGTGACCAAGTATACTCCTTTTTGGTCAGAGAGATTTCAATTTGCATCTGCTGTGAAATTGGATTCTGATGCAACTTGTATAAATGTTTTGCCTTTTAAGGATCATGAAGGGTTAAGTAAGTATGTGGCAGTTAGCGACGAAAAGGGAAGAGTTTATGTGTTTTTGAGAAATGGTGATGTGTTGGTTGAGTTTGATACTTTATTGGATTCACCTATTACGGCGATGGTTTCGTATACTTCTGCTTATAAGAATGAGAGCTTTGTTGTAACTGGTCATGAAAATGGGGGAATGTTGATACATAGAGTTTGGGAGGGATCGAGCGGAGAGGATTGGAGTTCGGTTTTTATGGAAAATGTCGGTAAGTTTGTGTCACCTGAAAATCACGAGAATGGTTTGGCTATAACTTTGTTGGAAGTTCATTTTGTAGGGAGGATGAAGTACATTCTATCAGCCGATACTAGTGGGAAGATTAAGGTTTTTAAGGAAAGCAGTGTGTTTTATGGTTCTGTCACTCCGAGTGCTAGGCCGTTAGTTTTCTTGAAGCAAAGGCTTATGTTTTTGACAGAAACTGGTGCAGGGTCATTGGATTTAAGGGGCATGAAAATTAGAGAATCTGAATGCGAAGGATTGAACCATTCCCTTGCTAGAGGTTATGTTTTCGATGCCACCGAACGTTCCAAGGCTTACGGTTTTACGTCAGATGGCGATTTAATTTATGTCTTGTTGCTTGGTGATGTAATGAACTTCAAATGCAGGGTTAGATACAAGAAAAAGTTTGAAATGGATGAGCCTCTTGCCTTGCAAGCAATTAAGGGATATTTGCTTATTGTTAACCCTAAAAAGGTTTTTGTGTTTAATGTTTCGTCTCCTCATTATGTGAGAATCGGGGTGCCTCGTCCGGTTTTCTCCTCAAGCATTGATGAGCTTAGATCCTCATTCCTGAATCATCCAACCCCAAGTTTGGATGACGAAGCAAGAGTGATGATACCGTTGATAGCTAGTGACCGTGAAAAGCTTGTTATTGTTGGCCTTGGAGGTGGTTATGTTGGAATGTATCATTCCAATCTACCTATTTATAAAGGTGAATTCAATACCATGCTATGGACTAGTCCTGTATTGTTCTTCGTACTTTTCCTATTCGGTGCTTGGCATTTTTTTGCCAAGAAGAAGGAAGCACTTACATCATGGGGACCAGATGATCCCTTGGCATCAGCATCTGGTGCTCCCTTGGCATCATCTAGTTCGGGTGAAAGATCTTTTGTCGACTCTTCTTCAAGAACTTCTGCCGATGTCATGGACCTTAGAAGTGGAGCTCTCAGAGGTCCACCACCACCGAGAAGGTATGGCTCTCCTACAAGGTTTCCTGCTGGAGCAGCAAGTACCTATAGACTTGGTTCTGCTGATCACAATCCTAGGCCAGCTTCGGTTGATCCCGATTTTCGAGCAGGGTCGGAGATTAAATATAGGGCATCAACTATGGATCCTCCTGGTTTCCCTAAACGAAGAGATGGCATGTTTGTAGGAAATCAAGCTGTAAATGATCGCAGTTGA

Protein sequence

>MS.gene27330.t1

MAASHKGKIFIFCLVLFLSFLYVSSDPLSPESCSIQSPSNDESVSESKANSDNFNQQVLLNKLEELVRNLSDIVARLESKQPQQEVPKVVQEKSRFTQIKGDVDDGRSSDKKVVEDVEYEGKAQNGERAKGMSVTKYTPFWSERFQFASAVKLDSDATCINVLPFKDHEGLSKYVAVSDEKGRVYVFLRNGDVLVEFDTLLDSPITAMVSYTSAYKNESFVVTGHENGGMLIHRVWEGSSGEDWSSVFMENVGKFVSPENHENGLAITLLEVHFVGRMKYILSADTSGKIKVFKESSVFYGSVTPSARPLVFLKQRLMFLTETGAGSLDLRGMKIRESECEGLNHSLARGYVFDATERSKAYGFTSDGDLIYVLLLGDVMNFKCRVRYKKKFEMDEPLALQAIKGYLLIVNPKKVFVFNVSSPHYVRIGVPRPVFSSSIDELRSSFLNHPTPSLDDEARVMIPLIASDREKLVIVGLGGGYVGMYHSNLPIYKGEFNTMLWTSPVLFFVLFLFGAWHFFAKKKEALTSWGPDDPLASASGAPLASSSSGERSFVDSSSRTSADVMDLRSGALRGPPPPRRYGSPTRFPAGAASTYRLGSADHNPRPASVDPDFRAGSEIKYRASTMDPPGFPKRRDGMFVGNQAVNDRS