Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28021.t1 | XP_013446743.1 | 96.3 | 594 | 22 | 0 | 1 | 594 | 8 | 601 | 4.9e-310 | 1073.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28021.t1 | F4HVG8 | 60.6 | 538 | 186 | 8 | 55 | 586 | 82 | 599 | 5.1e-174 | 612.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28021.t1 | A0A072U4L7 | 96.3 | 594 | 22 | 0 | 1 | 594 | 8 | 601 | 3.5e-310 | 1073.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene28021 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene28021 | 0.805954 | 1.04E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene28021 | -0.841885 | 3.62E-58 | -1.69E-46 |
| MS.gene050876 | MS.gene28021 | 0.802622 | 5.14E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene28021 | 0.859443 | 4.12E-63 | -1.69E-46 |
| MS.gene052482 | MS.gene28021 | 0.815203 | 1.04E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene28021 | 0.827086 | 1.90E-54 | -1.69E-46 |
| MS.gene056266 | MS.gene28021 | 0.801156 | 1.03E-48 | -1.69E-46 |
| MS.gene056450 | MS.gene28021 | 0.809226 | 2.10E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene28021 | 0.810291 | 1.24E-50 | -1.69E-46 |
| MS.gene056693 | MS.gene28021 | -0.804014 | 2.65E-49 | -1.69E-46 |
| MS.gene057684 | MS.gene28021 | 0.816551 | 5.22E-52 | -1.69E-46 |
| MS.gene057687 | MS.gene28021 | 0.809424 | 1.91E-50 | -1.69E-46 |
| MS.gene058719 | MS.gene28021 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene28021 | 0.818594 | 1.81E-52 | -1.69E-46 |
| MS.gene06042 | MS.gene28021 | -0.829552 | 4.83E-55 | -1.69E-46 |
| MS.gene060595 | MS.gene28021 | -0.802993 | 4.31E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene28021 | 0.812413 | 4.29E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28021.t1 | MTR_8g089810 | 96.296 | 594 | 22 | 0 | 1 | 594 | 8 | 601 | 0.0 | 1183 |
| MS.gene28021.t1 | MTR_8g089810 | 96.479 | 426 | 15 | 0 | 1 | 426 | 8 | 433 | 0.0 | 850 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28021.t1 | AT1G67840 | 61.278 | 532 | 180 | 9 | 61 | 586 | 88 | 599 | 0.0 | 638 |
| MS.gene28021.t1 | AT1G67840 | 54.570 | 372 | 143 | 9 | 61 | 426 | 88 | 439 | 7.86e-124 | 372 |
Find 173 sgRNAs with CRISPR-Local
Find 445 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTTGTTGTTGGCTTCT+TGG | 0.133045 | 4.4:-11346453 | MS.gene28021:CDS |
| AGCTCCAAGTGGAGCATCTT+TGG | 0.305623 | 4.4:+11342105 | None:intergenic |
| GACTATTGCCCGGGAGATAC+TGG | 0.314615 | 4.4:-11342167 | MS.gene28021:CDS |
| GGGTTGAATAATCATGTATC+TGG | 0.315581 | 4.4:-11346377 | MS.gene28021:CDS |
| GGAGGAGAGGGTGAGGGTGG+TGG | 0.328913 | 4.4:+11347853 | None:intergenic |
| TCGTCATCGGAATCGGAGTT+AGG | 0.331639 | 4.4:+11347890 | None:intergenic |
| GGAGTTAGGGTTAGCGTTGA+TGG | 0.333860 | 4.4:+11347904 | None:intergenic |
| GTTACCATATAGTGCATATC+AGG | 0.354489 | 4.4:+11342869 | None:intergenic |
| CGTTCCCGAATCGTTCTTAT+CGG | 0.360871 | 4.4:-11347678 | MS.gene28021:intron |
| GTTAATAAAATGCATAAATC+TGG | 0.375057 | 4.4:-11343505 | MS.gene28021:CDS |
| GTTAAACATCCCTTTGTTGT+TGG | 0.376078 | 4.4:-11346461 | MS.gene28021:CDS |
| TCTGGCTATGGCATATGTTA+TGG | 0.382761 | 4.4:-11346210 | MS.gene28021:CDS |
| CTTGGTTGCTGAGCTTCCAT+TGG | 0.384197 | 4.4:-11346435 | MS.gene28021:CDS |
| AGAACTACAGCTTTACATTC+AGG | 0.395217 | 4.4:+11346491 | None:intergenic |
| TTCTCTTAGTGCTGCTGCCC+AGG | 0.398572 | 4.4:-11343473 | MS.gene28021:CDS |
| CGCGGGTGGAGGAGAGGGTG+AGG | 0.401310 | 4.4:+11347846 | None:intergenic |
| CTGAAAGCCTGGCGCAGAGC+AGG | 0.408438 | 4.4:+11343001 | None:intergenic |
| GAGGCAGAGTCGATGGAAAT+CGG | 0.411945 | 4.4:+11347727 | None:intergenic |
| TGAGCAACACACCTGCATTT+CGG | 0.414216 | 4.4:+11347412 | None:intergenic |
| ATGACGTGGAACTTTGTTGC+TGG | 0.415315 | 4.4:-11342193 | MS.gene28021:CDS |
| AGAACTCTTGGCTGAAGATA+TGG | 0.415896 | 4.4:-11342227 | MS.gene28021:CDS |
| TTCGAAAGAGATGAAGTTGT+TGG | 0.418103 | 4.4:+11347705 | None:intergenic |
| TGACATTGTTGAGGATATCT+TGG | 0.419798 | 4.4:-11344145 | MS.gene28021:CDS |
| CAAGTGGAGCATCTTTGGTC+CGG | 0.421288 | 4.4:+11342110 | None:intergenic |
| TAATGTCAGGATGAATAATC+TGG | 0.421755 | 4.4:-11345768 | MS.gene28021:CDS |
| CTCCACTACGACATGGAATC+AGG | 0.422052 | 4.4:-11343417 | MS.gene28021:intron |
| TAGTTATGTGATGGATCAAC+TGG | 0.423265 | 4.4:-11347555 | MS.gene28021:CDS |
| GGAGGCGAGTGCGCGGGTGG+AGG | 0.425603 | 4.4:+11347835 | None:intergenic |
| GAAGGGGCATCTCTATATCC+TGG | 0.426176 | 4.4:+11343455 | None:intergenic |
| CATTTCGGAAAGTGCGGTCT+CGG | 0.430041 | 4.4:+11347427 | None:intergenic |
| TATGGCATATGTTATGGATC+AGG | 0.432013 | 4.4:-11346204 | MS.gene28021:intron |
| GGTTGCTGAGCTTCCATTGG+TGG | 0.432492 | 4.4:-11346432 | MS.gene28021:CDS |
| ATGCAATGTTTCTGAAGTAT+TGG | 0.436879 | 4.4:-11343122 | MS.gene28021:CDS |
| ACCAAGAAGCCAACAACAAA+GGG | 0.436980 | 4.4:+11346452 | None:intergenic |
| AAAGATGCTCCACTTGGAGC+TGG | 0.439507 | 4.4:-11342103 | MS.gene28021:CDS |
| AAGTGGAGCATCTTTGGTCC+GGG | 0.440131 | 4.4:+11342111 | None:intergenic |
| TGTTGACATTTCACAGTCTC+TGG | 0.441936 | 4.4:-11346228 | MS.gene28021:CDS |
| TGGACCTGATATGCACTATA+TGG | 0.442505 | 4.4:-11342873 | MS.gene28021:intron |
| CGTTGAGATTTGAAGGTAAG+TGG | 0.443076 | 4.4:+11347956 | None:intergenic |
| ATACAGCATCCTGGAGTTGT+TGG | 0.443402 | 4.4:+11344094 | None:intergenic |
| GGTGGAGGAGAGGGTGAGGG+TGG | 0.448628 | 4.4:+11347850 | None:intergenic |
| GGTTAGCGTTGATGGTTTGA+AGG | 0.451992 | 4.4:+11347912 | None:intergenic |
| GCTTTCAGCAACCTTATTGA+AGG | 0.452369 | 4.4:-11342986 | MS.gene28021:CDS |
| GGAGTAAAGCACCTTCAATA+AGG | 0.452645 | 4.4:+11342975 | None:intergenic |
| CCGGTGATCGTCATCGGAAT+CGG | 0.453030 | 4.4:+11347883 | None:intergenic |
| CATGGGAAATTCAGACTCTT+CGG | 0.458256 | 4.4:-11346307 | MS.gene28021:CDS |
| CAATAAGGTTGCTGAAAGCC+TGG | 0.458375 | 4.4:+11342990 | None:intergenic |
| TGAGGGTGGTGGAATTGTTC+CGG | 0.459416 | 4.4:+11347864 | None:intergenic |
| CTTTCAAGCATTCAAACCTT+GGG | 0.461316 | 4.4:-11345644 | MS.gene28021:CDS |
| CCTTTCCTCCAACATGTGTT+CGG | 0.472155 | 4.4:+11342954 | None:intergenic |
| GAGTGCGCGGGTGGAGGAGA+GGG | 0.475562 | 4.4:+11347841 | None:intergenic |
| AGTGAACTCGACAGGGGAGG+TGG | 0.476949 | 4.4:+11347796 | None:intergenic |
| TCTGACTCAGCATCTCCTCC+AGG | 0.476951 | 4.4:+11347509 | None:intergenic |
| CTCGTACTTATTGATGATGA+TGG | 0.476992 | 4.4:-11342893 | MS.gene28021:CDS |
| GGCGGAGGCGAGTGCGCGGG+TGG | 0.478007 | 4.4:+11347832 | None:intergenic |
| ACTTTCAAGCATTCAAACCT+TGG | 0.479091 | 4.4:-11345645 | MS.gene28021:CDS |
| GCGGCATCGTTGAGATTTGA+AGG | 0.481008 | 4.4:+11347949 | None:intergenic |
| GGTTGAATAATCATGTATCT+GGG | 0.481046 | 4.4:-11346376 | MS.gene28021:CDS |
| GGGGAACTCGTGTAGAACTT+TGG | 0.482111 | 4.4:-11342081 | MS.gene28021:CDS |
| AAGATGCTCCACTTGGAGCT+GGG | 0.482234 | 4.4:-11342102 | MS.gene28021:CDS |
| TGCTGGGCTGACTATTGCCC+GGG | 0.486262 | 4.4:-11342176 | MS.gene28021:CDS |
| CGAACCGATAAGAACGATTC+GGG | 0.486961 | 4.4:+11347674 | None:intergenic |
| TTCTGAAGTATTGGCAGACT+TGG | 0.488198 | 4.4:-11343113 | MS.gene28021:CDS |
| CGGGAGATACTGGAGAGTTA+TGG | 0.488539 | 4.4:-11342157 | MS.gene28021:CDS |
| CGTCATCGGAATCGGAGTTA+GGG | 0.488788 | 4.4:+11347891 | None:intergenic |
| TTGCTGGGCTGACTATTGCC+CGG | 0.489104 | 4.4:-11342177 | MS.gene28021:CDS |
| AGTCGCTGAGTGAACTCGAC+AGG | 0.490877 | 4.4:+11347788 | None:intergenic |
| ACGAACCGATAAGAACGATT+CGG | 0.493218 | 4.4:+11347673 | None:intergenic |
| AATTCAGACTCTTCGGATCA+AGG | 0.498498 | 4.4:-11346300 | MS.gene28021:CDS |
| AAATCAATCAAGAAAATGAA+TGG | 0.502569 | 4.4:-11343595 | MS.gene28021:CDS |
| CATTTCACAGTCTCTGGCTA+TGG | 0.502587 | 4.4:-11346222 | MS.gene28021:CDS |
| CGTAGTGGAGCGAGAGCTAA+AGG | 0.502814 | 4.4:+11343430 | None:intergenic |
| AGGCAGAGTCGATGGAAATC+GGG | 0.503639 | 4.4:+11347728 | None:intergenic |
| GTGAAGTTGCACATACCAAC+CGG | 0.505078 | 4.4:+11346272 | None:intergenic |
| CAACATGGCAAAATAATGTC+AGG | 0.505416 | 4.4:-11345781 | MS.gene28021:CDS |
| AGTCGATGGAAATCGGGACT+AGG | 0.507935 | 4.4:+11347734 | None:intergenic |
| CGGAGGGTTGCAGTGTACCC+TGG | 0.509145 | 4.4:-11347527 | MS.gene28021:CDS |
| TCAGATTTAACAACTGCCAT+TGG | 0.509352 | 4.4:+11342055 | None:intergenic |
| CGAGTGCGCGGGTGGAGGAG+AGG | 0.509761 | 4.4:+11347840 | None:intergenic |
| TGATGTTCTCCAACAACTCC+AGG | 0.510841 | 4.4:-11344103 | MS.gene28021:CDS |
| ACCATACGGACAAGAACTCT+TGG | 0.514444 | 4.4:-11342239 | MS.gene28021:CDS |
| ATTGTTCCGGTGATCGTCAT+CGG | 0.516068 | 4.4:+11347877 | None:intergenic |
| GCCAAGAGTTCTTGTCCGTA+TGG | 0.518420 | 4.4:+11342238 | None:intergenic |
| AGAAGAACCTGCTCTGCGCC+AGG | 0.520287 | 4.4:-11343008 | MS.gene28021:CDS |
| CGGACCAAAGATGCTCCACT+TGG | 0.520699 | 4.4:-11342109 | MS.gene28021:CDS |
| ATGGTTTGAAGGAAACAAGA+AGG | 0.523393 | 4.4:+11347923 | None:intergenic |
| TTATTAACAGAGCCATCCCT+TGG | 0.525157 | 4.4:+11343520 | None:intergenic |
| AGTACGAGGGTGCCACCAGC+TGG | 0.526696 | 4.4:+11342908 | None:intergenic |
| TGGATTTGGATAAGAAGTCA+TGG | 0.530715 | 4.4:-11346325 | MS.gene28021:CDS |
| AAGGTTTGAATGCTTGAAAG+TGG | 0.533582 | 4.4:+11345647 | None:intergenic |
| TGACGTGGAACTTTGTTGCT+GGG | 0.538505 | 4.4:-11342192 | MS.gene28021:CDS |
| GTGTCTACTTCTGCACCAGC+TGG | 0.540665 | 4.4:-11342923 | MS.gene28021:CDS |
| GACCGCACTTTCCGAAATGC+AGG | 0.541061 | 4.4:-11347423 | MS.gene28021:intron |
| GAATGGCGGAGGCGAGTGCG+CGG | 0.543708 | 4.4:+11347828 | None:intergenic |
| GCTTTACTCCGAACACATGT+TGG | 0.544894 | 4.4:-11342962 | MS.gene28021:CDS |
| GTTGTTGGAGGCAGAGTCGA+TGG | 0.546582 | 4.4:+11347720 | None:intergenic |
| GAAGGAAACAAGAAGGGTTG+CGG | 0.547746 | 4.4:+11347930 | None:intergenic |
| CATAACTCTCCAGTATCTCC+CGG | 0.547762 | 4.4:+11342158 | None:intergenic |
| GGATTTGGATAAGAAGTCAT+GGG | 0.548844 | 4.4:-11346324 | MS.gene28021:CDS |
| AACAGCATTTGATCTTTGAT+CGG | 0.550290 | 4.4:+11346247 | None:intergenic |
| GATGCTGAGTCAGACGAAGA+AGG | 0.554252 | 4.4:-11347500 | MS.gene28021:CDS |
| CCGATTCCGATGACGATCAC+CGG | 0.554284 | 4.4:-11347883 | MS.gene28021:CDS |
| AATGGCGGAGGCGAGTGCGC+GGG | 0.556940 | 4.4:+11347829 | None:intergenic |
| GTTGAGGATATCTTGGCGCT+AGG | 0.557376 | 4.4:-11344138 | MS.gene28021:CDS |
| AGATGCTCCACTTGGAGCTG+GGG | 0.559112 | 4.4:-11342101 | MS.gene28021:CDS |
| TGGATCAACTGGAGCTGCGG+AGG | 0.559128 | 4.4:-11347544 | MS.gene28021:CDS |
| TCTTCGGATCAAGGATGAGC+CGG | 0.561219 | 4.4:-11346291 | MS.gene28021:CDS |
| TTACTCCGAACACATGTTGG+AGG | 0.561301 | 4.4:-11342959 | MS.gene28021:CDS |
| TGTAGAACTTTGGCTTCCAA+TGG | 0.561959 | 4.4:-11342071 | MS.gene28021:CDS |
| TTGTCAAATATACAGCATCC+TGG | 0.564184 | 4.4:+11344085 | None:intergenic |
| GAGCGAGAGCTAAAGGTGGA+AGG | 0.564292 | 4.4:+11343437 | None:intergenic |
| GCGGGTGGAGGAGAGGGTGA+GGG | 0.565308 | 4.4:+11347847 | None:intergenic |
| TGGTTTGAAGGAAACAAGAA+GGG | 0.568078 | 4.4:+11347924 | None:intergenic |
| TAAAGCTGTAGTTCTTCCCA+TGG | 0.568418 | 4.4:-11346483 | MS.gene28021:CDS |
| AACCAAGAAGCCAACAACAA+AGG | 0.570684 | 4.4:+11346451 | None:intergenic |
| TGTGCAGGTGTACGTTAGAC+CGG | 0.572492 | 4.4:-11347582 | MS.gene28021:intron |
| GAAAGAGATGAAGTTGTTGG+AGG | 0.572888 | 4.4:+11347708 | None:intergenic |
| AGCGAGAGCTAAAGGTGGAA+GGG | 0.573231 | 4.4:+11343438 | None:intergenic |
| ACCGGCAGGTAGTTATGTGA+TGG | 0.574372 | 4.4:-11347564 | MS.gene28021:CDS |
| TCGGCAGATCGCAATCCGGC+GGG | 0.574420 | 4.4:+11347446 | None:intergenic |
| GCGAGAGCTAAAGGTGGAAG+GGG | 0.575580 | 4.4:+11343439 | None:intergenic |
| CAGGTGTACGTTAGACCGGC+AGG | 0.576544 | 4.4:-11347578 | MS.gene28021:CDS |
| CTCGGCAGATCGCAATCCGG+CGG | 0.579636 | 4.4:+11347445 | None:intergenic |
| ATGCATTCACTCACACCATA+CGG | 0.579978 | 4.4:-11342253 | MS.gene28021:CDS |
| TTAGATAGTTCTCCAAGGGA+TGG | 0.581101 | 4.4:-11343532 | MS.gene28021:CDS |
| GTTGTTAGATAGTTCTCCAA+GGG | 0.582478 | 4.4:-11343536 | MS.gene28021:CDS |
| GCAGCAGCACTAAGAGAAAG+TGG | 0.582809 | 4.4:+11343478 | None:intergenic |
| GTTGAGATTTGAAGGTAAGT+GGG | 0.587743 | 4.4:+11347957 | None:intergenic |
| GGTCTCGGCAGATCGCAATC+CGG | 0.588364 | 4.4:+11347442 | None:intergenic |
| GATTTCATATGACATTGTTG+AGG | 0.588742 | 4.4:-11344154 | MS.gene28021:CDS |
| TCTACTTCTGCACCAGCTGG+TGG | 0.590389 | 4.4:-11342920 | MS.gene28021:CDS |
| GATGCTCCACTTGGAGCTGG+GGG | 0.590416 | 4.4:-11342100 | MS.gene28021:CDS |
| TCCATCACATAACTACCTGC+CGG | 0.592041 | 4.4:+11347563 | None:intergenic |
| AAGGGGCATCTCTATATCCT+GGG | 0.593040 | 4.4:+11343456 | None:intergenic |
| TGTGTGAAGGGTCAAAGTGA+TGG | 0.593563 | 4.4:-11346398 | MS.gene28021:CDS |
| CCGAACACATGTTGGAGGAA+AGG | 0.593615 | 4.4:-11342954 | MS.gene28021:CDS |
| GAGCTCGAAACTTGTGTGAA+GGG | 0.594588 | 4.4:-11346410 | MS.gene28021:CDS |
| ACAAAGGGATGTTTAACCAT+GGG | 0.598210 | 4.4:+11346467 | None:intergenic |
| CAAGTTTCGAGCTCCACCAA+TGG | 0.598526 | 4.4:+11346419 | None:intergenic |
| GGAGACTTTACGAATGGCGG+AGG | 0.601002 | 4.4:+11347817 | None:intergenic |
| ATAACTCTCCAGTATCTCCC+GGG | 0.614715 | 4.4:+11342159 | None:intergenic |
| AACAAAGGGATGTTTAACCA+TGG | 0.615358 | 4.4:+11346466 | None:intergenic |
| TCTTCTACAGCAGCTAGCAA+AGG | 0.616929 | 4.4:+11343025 | None:intergenic |
| CTGACTCAGCATCTCCTCCA+GGG | 0.627098 | 4.4:+11347510 | None:intergenic |
| AGTTGTTAGATAGTTCTCCA+AGG | 0.627287 | 4.4:-11343537 | MS.gene28021:CDS |
| CGGATCAAGGATGAGCCGGT+TGG | 0.628083 | 4.4:-11346287 | MS.gene28021:CDS |
| GTCGCTGAGTGAACTCGACA+GGG | 0.629707 | 4.4:+11347789 | None:intergenic |
| GTGTGAAGGGTCAAAGTGAT+GGG | 0.633671 | 4.4:-11346397 | MS.gene28021:CDS |
| GAATAATCATGTATCTGGGG+AGG | 0.635708 | 4.4:-11346372 | MS.gene28021:CDS |
| AATACTTCAGAAACATTGCA+TGG | 0.636997 | 4.4:+11343124 | None:intergenic |
| GGATCAACTGGAGCTGCGGA+GGG | 0.640471 | 4.4:-11347543 | MS.gene28021:CDS |
| GGAGCTCGAAACTTGTGTGA+AGG | 0.642867 | 4.4:-11346411 | MS.gene28021:CDS |
| AGTGGAGCATCTTTGGTCCG+GGG | 0.648290 | 4.4:+11342112 | None:intergenic |
| CATCATCATCAATAAGTACG+AGG | 0.649335 | 4.4:+11342894 | None:intergenic |
| CACCTGCATTTCGGAAAGTG+CGG | 0.653202 | 4.4:+11347421 | None:intergenic |
| GTTGAATAATCATGTATCTG+GGG | 0.655716 | 4.4:-11346375 | MS.gene28021:CDS |
| GCTCTCGCTCCACTACGACA+TGG | 0.656196 | 4.4:-11343424 | MS.gene28021:CDS |
| TACCTGATTCCATGTCGTAG+TGG | 0.661231 | 4.4:+11343415 | None:intergenic |
| CTGAGTGAACTCGACAGGGG+AGG | 0.661874 | 4.4:+11347793 | None:intergenic |
| ATCATCATCAATAAGTACGA+GGG | 0.670541 | 4.4:+11342895 | None:intergenic |
| GGTGGAGACTTTACGAATGG+CGG | 0.670767 | 4.4:+11347814 | None:intergenic |
| GGATGCTGTATATTTGACAA+AGG | 0.675769 | 4.4:-11344082 | MS.gene28021:intron |
| AGTGGAGCGAGAGCTAAAGG+TGG | 0.679241 | 4.4:+11343433 | None:intergenic |
| GGAGGTGGAGACTTTACGAA+TGG | 0.679784 | 4.4:+11347811 | None:intergenic |
| TGTTACTTCAGCAATCAACA+TGG | 0.683428 | 4.4:-11345796 | MS.gene28021:CDS |
| TGATGGATCAACTGGAGCTG+CGG | 0.683645 | 4.4:-11347547 | MS.gene28021:CDS |
| GAATGCTTGAAAGTGGACCA+CGG | 0.687124 | 4.4:+11345654 | None:intergenic |
| TCAAACACAAACCAGATCCG+TGG | 0.690750 | 4.4:-11345671 | MS.gene28021:intron |
| AGGGTTGCAGTGTACCCTGG+AGG | 0.708171 | 4.4:-11347524 | MS.gene28021:CDS |
| TCGCTGAGTGAACTCGACAG+GGG | 0.715910 | 4.4:+11347790 | None:intergenic |
| CACACAAACAAAGAAAAGCG+AGG | 0.726712 | 4.4:-11345609 | MS.gene28021:intron |
| TGGTTGAAGACAATATGACG+TGG | 0.731025 | 4.4:-11342207 | MS.gene28021:CDS |
| TCGTGCGCATTATATCACCC+CGG | 0.768678 | 4.4:-11342129 | MS.gene28021:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAACTAAACTAAATA+AGG | - | chr4.4:11345694-11345713 | MS.gene28021:intron | 10.0% |
| !! | ATAATTAATTCATGTTAAAA+CGG | - | chr4.4:11345071-11345090 | MS.gene28021:intron | 10.0% |
| !!! | ATTGTCTTTTATTTTATTTT+AGG | + | chr4.4:11345619-11345638 | None:intergenic | 10.0% |
| !!! | GTTAAATTTTCATATAATTT+AGG | - | chr4.4:11343370-11343389 | MS.gene28021:intron | 10.0% |
| !! | AAAACAATATTATTACCTTT+AGG | - | chr4.4:11346777-11346796 | MS.gene28021:intron | 15.0% |
| !! | AAACAATATTATTACCTTTA+GGG | - | chr4.4:11346778-11346797 | MS.gene28021:intron | 15.0% |
| !! | AACTATTAAAATCAACTAAA+AGG | - | chr4.4:11346238-11346257 | MS.gene28021:CDS | 15.0% |
| !! | AATTAATTATTATCAAACTG+TGG | + | chr4.4:11345061-11345080 | None:intergenic | 15.0% |
| !! | TGAAGATAAAAAAATTTCAA+AGG | + | chr4.4:11346051-11346070 | None:intergenic | 15.0% |
| !! | TTTAAATTTATCTCGAAAAA+CGG | + | chr4.4:11343237-11343256 | None:intergenic | 15.0% |
| !! | AAAAAATTTCATATACCAGA+GGG | + | chr4.4:11343299-11343318 | None:intergenic | 20.0% |
| !! | AAAAGGATCAATTATATCTT+GGG | - | chr4.4:11343198-11343217 | MS.gene28021:intron | 20.0% |
| !! | AAATCAATCAAGAAAATGAA+TGG | - | chr4.4:11346439-11346458 | MS.gene28021:CDS | 20.0% |
| !! | AACGTTTAATTACAAGTTTA+AGG | + | chr4.4:11344759-11344778 | None:intergenic | 20.0% |
| !! | ACAATAATATTAAAAAGCCT+CGG | - | chr4.4:11344691-11344710 | MS.gene28021:intron | 20.0% |
| !! | ATTAGGGTAACAATTAATTA+AGG | - | chr4.4:11345110-11345129 | MS.gene28021:intron | 20.0% |
| !! | CATAATTATATACACATTGA+AGG | + | chr4.4:11346703-11346722 | None:intergenic | 20.0% |
| !! | GTTAATAAAATGCATAAATC+TGG | - | chr4.4:11346529-11346548 | MS.gene28021:intron | 20.0% |
| !! | TGAATTTAGATTAGGAATTA+GGG | - | chr4.4:11345094-11345113 | MS.gene28021:intron | 20.0% |
| !! | TTAAATTTATCTCGAAAAAC+GGG | + | chr4.4:11343236-11343255 | None:intergenic | 20.0% |
| !! | TTAATTGATAAATTGCTGAA+CGG | - | chr4.4:11342412-11342431 | MS.gene28021:intron | 20.0% |
| !! | TTATATTATTGATGCAACAT+TGG | + | chr4.4:11346759-11346778 | None:intergenic | 20.0% |
| !! | TTATTTACTCTTATTGTTGT+TGG | - | chr4.4:11343468-11343487 | MS.gene28021:CDS | 20.0% |
| !!! | ATATTATTAGGGTGATTTTA+TGG | + | chr4.4:11347559-11347578 | None:intergenic | 20.0% |
| !!! | ATTAATTAAGGTTTAAGACT+TGG | - | chr4.4:11345122-11345141 | MS.gene28021:intron | 20.0% |
| !!! | TAACTTTAAAAGCACAAATT+CGG | + | chr4.4:11344010-11344029 | None:intergenic | 20.0% |
| !!! | TGATTAGAATAAGGTTATTT+TGG | + | chr4.4:11343108-11343127 | None:intergenic | 20.0% |
| !!! | TTATTTTAGGAACGAATATA+TGG | + | chr4.4:11345606-11345625 | None:intergenic | 20.0% |
| !!! | TTCTATTTTCGTATACTTTA+GGG | - | chr4.4:11343421-11343440 | MS.gene28021:CDS | 20.0% |
| !!! | TTTCTATTTTCGTATACTTT+AGG | - | chr4.4:11343420-11343439 | MS.gene28021:CDS | 20.0% |
| ! | AACGTTAATCCTAATTACTA+AGG | - | chr4.4:11344773-11344792 | MS.gene28021:intron | 25.0% |
| ! | AACTATTATCACACATATGT+GGG | - | chr4.4:11345985-11346004 | MS.gene28021:intron | 25.0% |
| ! | AAGGCACATTAATTGATTAT+TGG | + | chr4.4:11346032-11346051 | None:intergenic | 25.0% |
| ! | AAGTAAAGCATGAATGTTTA+TGG | - | chr4.4:11345316-11345335 | MS.gene28021:intron | 25.0% |
| ! | AATTATATACACATTGAAGG+TGG | + | chr4.4:11346700-11346719 | None:intergenic | 25.0% |
| ! | AATTCGGAAAGGAAAAAAAA+AGG | + | chr4.4:11343994-11344013 | None:intergenic | 25.0% |
| ! | ACTCAATCAAAGAATTGTTT+AGG | + | chr4.4:11347657-11347676 | None:intergenic | 25.0% |
| ! | AGACAGTAAAATAAATTGCA+AGG | - | chr4.4:11345242-11345261 | MS.gene28021:intron | 25.0% |
| ! | ATAATAACAGCAATGTTAAC+AGG | - | chr4.4:11343348-11343367 | MS.gene28021:intron | 25.0% |
| ! | ATAGGTTACATACATAAACA+TGG | + | chr4.4:11343150-11343169 | None:intergenic | 25.0% |
| ! | ATAGTTTATAGAGACCAAAT+TGG | + | chr4.4:11346224-11346243 | None:intergenic | 25.0% |
| ! | ATCAATCTAATTCATAGAAG+TGG | + | chr4.4:11344062-11344081 | None:intergenic | 25.0% |
| ! | ATCTTATTCATTTCCTTGAT+TGG | - | chr4.4:11346127-11346146 | MS.gene28021:intron | 25.0% |
| ! | ATTCTGATTCTGTTATGTTA+TGG | - | chr4.4:11342644-11342663 | MS.gene28021:intron | 25.0% |
| ! | CAAAGAATTGTTTAGGTAAA+GGG | + | chr4.4:11347650-11347669 | None:intergenic | 25.0% |
| ! | CAATAATATTAAAAAGCCTC+GGG | - | chr4.4:11344692-11344711 | MS.gene28021:intron | 25.0% |
| ! | GAAAAAATTTCATATACCAG+AGG | + | chr4.4:11343300-11343319 | None:intergenic | 25.0% |
| ! | GAAAAGGATCAATTATATCT+TGG | - | chr4.4:11343197-11343216 | MS.gene28021:intron | 25.0% |
| ! | GCTATAGAGAAATCAATTTA+AGG | + | chr4.4:11344113-11344132 | None:intergenic | 25.0% |
| ! | GTGAATTTAGATTAGGAATT+AGG | - | chr4.4:11345093-11345112 | MS.gene28021:intron | 25.0% |
| ! | TAAAACGGTGAATTTAGATT+AGG | - | chr4.4:11345086-11345105 | MS.gene28021:intron | 25.0% |
| ! | TAAATTGCAAGGAAAGTAAA+AGG | - | chr4.4:11345253-11345272 | MS.gene28021:intron | 25.0% |
| ! | TAGAAACTAAGCAACTAAAA+GGG | - | chr4.4:11345375-11345394 | MS.gene28021:intron | 25.0% |
| ! | TAGTTAAACTACTAAAGAGT+AGG | - | chr4.4:11343258-11343277 | MS.gene28021:intron | 25.0% |
| ! | TATAAATTGACAGGATTCTA+GGG | + | chr4.4:11343331-11343350 | None:intergenic | 25.0% |
| ! | TCAAAAAGAAAATACCCTAA+AGG | + | chr4.4:11346795-11346814 | None:intergenic | 25.0% |
| ! | TCAAAGAATTGTTTAGGTAA+AGG | + | chr4.4:11347651-11347670 | None:intergenic | 25.0% |
| ! | TGCTGTTATTATAAATTGAC+AGG | + | chr4.4:11343340-11343359 | None:intergenic | 25.0% |
| ! | TTAGAAACTAAGCAACTAAA+AGG | - | chr4.4:11345374-11345393 | MS.gene28021:intron | 25.0% |
| ! | TTATAAATTGACAGGATTCT+AGG | + | chr4.4:11343332-11343351 | None:intergenic | 25.0% |
| ! | TTATTCATTCGTTGTGTAAT+TGG | - | chr4.4:11345823-11345842 | MS.gene28021:intron | 25.0% |
| ! | TTCTTATCCAAATCCAAAAA+AGG | + | chr4.4:11343705-11343724 | None:intergenic | 25.0% |
| ! | TTGGATGATAGTAAAGTTTA+GGG | + | chr4.4:11346265-11346284 | None:intergenic | 25.0% |
| ! | TTTGGAAGGAGATATTATTA+GGG | + | chr4.4:11347570-11347589 | None:intergenic | 25.0% |
| !! | AACAATTTTCTTGTAGATCA+AGG | + | chr4.4:11346158-11346177 | None:intergenic | 25.0% |
| !! | CACAATTACTGATTAGAATA+AGG | + | chr4.4:11343117-11343136 | None:intergenic | 25.0% |
| !! | CTTTGTTTAGATAATGACAA+GGG | - | chr4.4:11343871-11343890 | MS.gene28021:intron | 25.0% |
| !! | GTATGATATCTTTTAAACCT+AGG | - | chr4.4:11347621-11347640 | MS.gene28021:intron | 25.0% |
| !! | TCTATTTTCGTATACTTTAG+GGG | - | chr4.4:11343422-11343441 | MS.gene28021:CDS | 25.0% |
| !!! | ATTTTAACGATCAATACTTG+AGG | + | chr4.4:11342699-11342718 | None:intergenic | 25.0% |
| !!! | CAATCTCTAGTTTGTTAAAA+AGG | + | chr4.4:11347230-11347249 | None:intergenic | 25.0% |
| !!! | GGAAATTAGTGCTTATTTTT+TGG | - | chr4.4:11347431-11347450 | MS.gene28021:CDS | 25.0% |
| !!! | TAAGGTTAGTTTTTGATACT+TGG | - | chr4.4:11344161-11344180 | MS.gene28021:intron | 25.0% |
| !!! | TTAGTTTTTGATACTTGGTA+TGG | - | chr4.4:11344166-11344185 | MS.gene28021:intron | 25.0% |
| !!! | TTTAGGGTATTTTCTTTTTG+AGG | - | chr4.4:11346794-11346813 | MS.gene28021:intron | 25.0% |
| AAACTACTAAAGAGTAGGAA+TGG | - | chr4.4:11343263-11343282 | MS.gene28021:intron | 30.0% | |
| AACAGCATTTGATCTTTGAT+CGG | + | chr4.4:11343790-11343809 | None:intergenic | 30.0% | |
| AATACTTCAGAAACATTGCA+TGG | + | chr4.4:11346913-11346932 | None:intergenic | 30.0% | |
| AATCTAATTCATAGAAGTGG+TGG | + | chr4.4:11344059-11344078 | None:intergenic | 30.0% | |
| AATGTTCTACAAGTACATAG+AGG | + | chr4.4:11346088-11346107 | None:intergenic | 30.0% | |
| AATTGAGTACTTTGTTGCAA+GGG | - | chr4.4:11347706-11347725 | MS.gene28021:CDS | 30.0% | |
| ACATAAAGTTTCGATCTTCA+AGG | + | chr4.4:11344896-11344915 | None:intergenic | 30.0% | |
| ACGATTTCATGACAGTTATA+AGG | - | chr4.4:11344143-11344162 | MS.gene28021:CDS | 30.0% | |
| ACTATTATCACACATATGTG+GGG | - | chr4.4:11345986-11346005 | MS.gene28021:intron | 30.0% | |
| AGCAAAATTAGAACATGCTA+AGG | + | chr4.4:11344339-11344358 | None:intergenic | 30.0% | |
| ATAAGTCTAATGACGTAATC+CGG | + | chr4.4:11345154-11345173 | None:intergenic | 30.0% | |
| ATACTCTCACAGTAGAAAAA+TGG | + | chr4.4:11346305-11346324 | None:intergenic | 30.0% | |
| ATCATCATCAATAAGTACGA+GGG | + | chr4.4:11347142-11347161 | None:intergenic | 30.0% | |
| CAACCTTAACCTACAATTAA+CGG | + | chr4.4:11343521-11343540 | None:intergenic | 30.0% | |
| CAACTATTATCACACATATG+TGG | - | chr4.4:11345984-11346003 | MS.gene28021:intron | 30.0% | |
| CACCTATACTACAAGATATT+GGG | + | chr4.4:11343174-11343193 | None:intergenic | 30.0% | |
| CATAAAGTTTCGATCTTCAA+GGG | + | chr4.4:11344895-11344914 | None:intergenic | 30.0% | |
| CTCCTCTAATCAATATCTAA+AGG | + | chr4.4:11344628-11344647 | None:intergenic | 30.0% | |
| CTTACTACTATTACTTCGAT+AGG | + | chr4.4:11344564-11344583 | None:intergenic | 30.0% | |
| CTTGTCTAAATTCACTTGAT+CGG | - | chr4.4:11344955-11344974 | MS.gene28021:intron | 30.0% | |
| GAAACTTGTCCTTAGTAATT+AGG | + | chr4.4:11344785-11344804 | None:intergenic | 30.0% | |
| GATTTCATATGACATTGTTG+AGG | - | chr4.4:11345880-11345899 | MS.gene28021:intron | 30.0% | |
| GCACTAATTTCCTCAAAAAA+TGG | + | chr4.4:11347423-11347442 | None:intergenic | 30.0% | |
| GGAAAGGAAAAAAAAAGGAA+AGG | + | chr4.4:11343989-11344008 | None:intergenic | 30.0% | |
| GGTTGAATAATCATGTATCT+GGG | - | chr4.4:11343658-11343677 | MS.gene28021:intron | 30.0% | |
| GTTGAATAATCATGTATCTG+GGG | - | chr4.4:11343659-11343678 | MS.gene28021:intron | 30.0% | |
| GTTGGATGATAGTAAAGTTT+AGG | + | chr4.4:11346266-11346285 | None:intergenic | 30.0% | |
| GTTTGGAAGGAGATATTATT+AGG | + | chr4.4:11347571-11347590 | None:intergenic | 30.0% | |
| TAAAGCATGAATGTTTATGG+TGG | - | chr4.4:11345319-11345338 | MS.gene28021:intron | 30.0% | |
| TAATGTCAGGATGAATAATC+TGG | - | chr4.4:11344266-11344285 | MS.gene28021:intron | 30.0% | |
| TAATTGAGTACTTTGTTGCA+AGG | - | chr4.4:11347705-11347724 | MS.gene28021:CDS | 30.0% | |
| TACTAACGTTTGGAAATAGA+GGG | + | chr4.4:11343032-11343051 | None:intergenic | 30.0% | |
| TACTACAAGATATTGGGAAT+AGG | + | chr4.4:11343168-11343187 | None:intergenic | 30.0% | |
| TCAGGTTTATATACTTCATC+TGG | - | chr4.4:11343848-11343867 | MS.gene28021:intron | 30.0% | |
| TCATGAAATCGTACAACAAA+CGG | + | chr4.4:11344135-11344154 | None:intergenic | 30.0% | |
| TCGCATCATTCAATAAACTA+GGG | - | chr4.4:11342387-11342406 | MS.gene28021:intron | 30.0% | |
| TGACATAGTAAAGTTTAACC+AGG | + | chr4.4:11345753-11345772 | None:intergenic | 30.0% | |
| TTATCCAAATCCAAAAAAGG+AGG | + | chr4.4:11343702-11343721 | None:intergenic | 30.0% | |
| TTCCCAATATCTTGTAGTAT+AGG | - | chr4.4:11343169-11343188 | MS.gene28021:intron | 30.0% | |
| TTCGCATCATTCAATAAACT+AGG | - | chr4.4:11342386-11342405 | MS.gene28021:intron | 30.0% | |
| ! | AGCCTTTAGATATTGATTAG+AGG | - | chr4.4:11344623-11344642 | MS.gene28021:intron | 30.0% |
| ! | ATTTGGAACGTTTAATTCCA+TGG | - | chr4.4:11347306-11347325 | MS.gene28021:intron | 30.0% |
| ! | TACTCTTATTGTTGTTGGTA+AGG | - | chr4.4:11343473-11343492 | MS.gene28021:CDS | 30.0% |
| ! | TGTTGTTGTTGTAATTCCAT+GGG | - | chr4.4:11347370-11347389 | MS.gene28021:intron | 30.0% |
| ! | TTAAAAGCACAAATTCGGAA+AGG | + | chr4.4:11344005-11344024 | None:intergenic | 30.0% |
| ! | TTGTTGTTGTTGTAATTCCA+TGG | - | chr4.4:11347369-11347388 | MS.gene28021:intron | 30.0% |
| ! | TTTGGAACGTTTAATTCCAT+GGG | - | chr4.4:11347307-11347326 | MS.gene28021:intron | 30.0% |
| !! | ATGCAATGTTTCTGAAGTAT+TGG | - | chr4.4:11346912-11346931 | MS.gene28021:intron | 30.0% |
| !! | GCTTTGTTTAGATAATGACA+AGG | - | chr4.4:11343870-11343889 | MS.gene28021:intron | 30.0% |
| !! | TTTTAGGAACGAATATATGG+TGG | + | chr4.4:11345603-11345622 | None:intergenic | 30.0% |
| !!! | TATGCTTTTTTGTTGATGTC+AGG | - | chr4.4:11346883-11346902 | MS.gene28021:intron | 30.0% |
| !!! | TTATTCACTTCCTCCTTTTT+TGG | - | chr4.4:11343689-11343708 | MS.gene28021:intron | 30.0% |
| AAAAACATTCTCATGACCTG+TGG | - | chr4.4:11347279-11347298 | MS.gene28021:intron | 35.0% | |
| AAAACAGTAAAGCTGCAACA+GGG | - | chr4.4:11345399-11345418 | MS.gene28021:intron | 35.0% | |
| AAAACATTCTCATGACCTGT+GGG | - | chr4.4:11347280-11347299 | MS.gene28021:intron | 35.0% | |
| AACAAAGGGATGTTTAACCA+TGG | + | chr4.4:11343571-11343590 | None:intergenic | 35.0% | |
| AACCTTAAGCTACTAACGTT+TGG | + | chr4.4:11343042-11343061 | None:intergenic | 35.0% | |
| AAGGTTTGAATGCTTGAAAG+TGG | + | chr4.4:11344390-11344409 | None:intergenic | 35.0% | |
| ACAAAGGGATGTTTAACCAT+GGG | + | chr4.4:11343570-11343589 | None:intergenic | 35.0% | |
| ACTTTCAAGCATTCAAACCT+TGG | - | chr4.4:11344389-11344408 | MS.gene28021:intron | 35.0% | |
| AGAACTACAGCTTTACATTC+AGG | + | chr4.4:11343546-11343565 | None:intergenic | 35.0% | |
| AGAATAGTCTAGCAAACCTT+GGG | + | chr4.4:11344921-11344940 | None:intergenic | 35.0% | |
| AGGAGAAAGAGTTAAGAAGT+TGG | - | chr4.4:11344643-11344662 | MS.gene28021:intron | 35.0% | |
| AGTCACTCTTTCTAACTGAT+AGG | - | chr4.4:11344518-11344537 | MS.gene28021:intron | 35.0% | |
| AGTGCGAAAATACGAAGATA+TGG | + | chr4.4:11345539-11345558 | None:intergenic | 35.0% | |
| AGTTGTTAGATAGTTCTCCA+AGG | - | chr4.4:11346497-11346516 | MS.gene28021:CDS | 35.0% | |
| ATCAATTCATAAAGCGAACG+CGG | + | chr4.4:11344992-11345011 | None:intergenic | 35.0% | |
| ATGGTTTGAAGGAAACAAGA+AGG | + | chr4.4:11342114-11342133 | None:intergenic | 35.0% | |
| CAACATGGCAAAATAATGTC+AGG | - | chr4.4:11344253-11344272 | MS.gene28021:intron | 35.0% | |
| CAGTTAGAAAGAGTGACTTA+TGG | + | chr4.4:11344516-11344535 | None:intergenic | 35.0% | |
| CATCATCATCAATAAGTACG+AGG | + | chr4.4:11347143-11347162 | None:intergenic | 35.0% | |
| CCAATATCTTGTAGTATAGG+TGG | - | chr4.4:11343172-11343191 | MS.gene28021:intron | 35.0% | |
| CCACCTATACTACAAGATAT+TGG | + | chr4.4:11343175-11343194 | None:intergenic | 35.0% | |
| CGATCAAGTGAATTTAGACA+AGG | + | chr4.4:11344957-11344976 | None:intergenic | 35.0% | |
| CTACTAACGTTTGGAAATAG+AGG | + | chr4.4:11343033-11343052 | None:intergenic | 35.0% | |
| CTTTCAAGCATTCAAACCTT+GGG | - | chr4.4:11344390-11344409 | MS.gene28021:intron | 35.0% | |
| GATCAAGGAAAATCCAATCA+AGG | + | chr4.4:11346143-11346162 | None:intergenic | 35.0% | |
| GATTGAGTACTTTGTTGCAA+GGG | - | chr4.4:11347669-11347688 | MS.gene28021:intron | 35.0% | |
| GGATGCTGTATATTTGACAA+AGG | - | chr4.4:11345952-11345971 | MS.gene28021:intron | 35.0% | |
| GGATTTGGATAAGAAGTCAT+GGG | - | chr4.4:11343710-11343729 | MS.gene28021:intron | 35.0% | |
| GGGTTGAATAATCATGTATC+TGG | - | chr4.4:11343657-11343676 | MS.gene28021:intron | 35.0% | |
| GTAACATTGCTTTCTGCAAA+CGG | + | chr4.4:11344224-11344243 | None:intergenic | 35.0% | |
| GTCACTCTTTCTAACTGATA+GGG | - | chr4.4:11344519-11344538 | MS.gene28021:intron | 35.0% | |
| GTTACCATATAGTGCATATC+AGG | + | chr4.4:11347168-11347187 | None:intergenic | 35.0% | |
| GTTGAGATTTGAAGGTAAGT+GGG | + | chr4.4:11342080-11342099 | None:intergenic | 35.0% | |
| GTTGTTAGATAGTTCTCCAA+GGG | - | chr4.4:11346498-11346517 | MS.gene28021:CDS | 35.0% | |
| TAAAACAGTAAAGCTGCAAC+AGG | - | chr4.4:11345398-11345417 | MS.gene28021:intron | 35.0% | |
| TACTAAAGAGTAGGAATGGA+GGG | - | chr4.4:11343267-11343286 | MS.gene28021:intron | 35.0% | |
| TATGGCATATGTTATGGATC+AGG | - | chr4.4:11343830-11343849 | MS.gene28021:intron | 35.0% | |
| TATGTCAGTTCTATAACGAG+TGG | - | chr4.4:11345766-11345785 | MS.gene28021:CDS | 35.0% | |
| TCAGATTTAACAACTGCCAT+TGG | + | chr4.4:11347982-11348001 | None:intergenic | 35.0% | |
| TGACATTGTTGAGGATATCT+TGG | - | chr4.4:11345889-11345908 | MS.gene28021:intron | 35.0% | |
| TGACCGTTAATTGTAGGTTA+AGG | - | chr4.4:11343515-11343534 | MS.gene28021:CDS | 35.0% | |
| TGAGTAGACTTCTTTGTCTT+GGG | + | chr4.4:11345185-11345204 | None:intergenic | 35.0% | |
| TGATTGAGTACTTTGTTGCA+AGG | - | chr4.4:11347668-11347687 | MS.gene28021:intron | 35.0% | |
| TGCTAAGGCTAAGAATAAAG+AGG | + | chr4.4:11344324-11344343 | None:intergenic | 35.0% | |
| TGGATTTGGATAAGAAGTCA+TGG | - | chr4.4:11343709-11343728 | MS.gene28021:intron | 35.0% | |
| TGGTTTGAAGGAAACAAGAA+GGG | + | chr4.4:11342113-11342132 | None:intergenic | 35.0% | |
| TGTAGTATAGGTGGAAGAAA+AGG | - | chr4.4:11343181-11343200 | MS.gene28021:intron | 35.0% | |
| TTAACCTACAATTAACGGTC+AGG | + | chr4.4:11343516-11343535 | None:intergenic | 35.0% | |
| TTCCAAACGTTAGTAGCTTA+AGG | - | chr4.4:11343037-11343056 | MS.gene28021:CDS | 35.0% | |
| TTCGAAAGAGATGAAGTTGT+TGG | + | chr4.4:11342332-11342351 | None:intergenic | 35.0% | |
| TTGCAAGGGATTTGTGAAAA+TGG | - | chr4.4:11347720-11347739 | MS.gene28021:CDS | 35.0% | |
| TTGGTATGGACCTAAATTTC+TGG | - | chr4.4:11344180-11344199 | MS.gene28021:intron | 35.0% | |
| TTGTCAAATATACAGCATCC+TGG | + | chr4.4:11345952-11345971 | None:intergenic | 35.0% | |
| TTTATGACTCATCACTAACC+TGG | - | chr4.4:11345732-11345751 | MS.gene28021:intron | 35.0% | |
| ! | AAAAAGGAAAGTGCATAAGC+AGG | + | chr4.4:11347214-11347233 | None:intergenic | 35.0% |
| ! | AAAAGGAAAGTGCATAAGCA+GGG | + | chr4.4:11347213-11347232 | None:intergenic | 35.0% |
| ! | AGAGTTTTTGTCCAATATGC+AGG | - | chr4.4:11346393-11346412 | MS.gene28021:CDS | 35.0% |
| ! | CAGAATATTAGCCTGCATAT+TGG | + | chr4.4:11346407-11346426 | None:intergenic | 35.0% |
| ! | CTTATTGTTGTTGGTAAGGA+GGG | - | chr4.4:11343477-11343496 | MS.gene28021:CDS | 35.0% |
| ! | GTTAAACATCCCTTTGTTGT+TGG | - | chr4.4:11343573-11343592 | MS.gene28021:CDS | 35.0% |
| ! | TCACACTTCTTGGATTTTGT+TGG | - | chr4.4:11343936-11343955 | MS.gene28021:intron | 35.0% |
| ! | TCTTATTGTTGTTGGTAAGG+AGG | - | chr4.4:11343476-11343495 | MS.gene28021:CDS | 35.0% |
| ! | TGTTACTTCAGCAATCAACA+TGG | - | chr4.4:11344238-11344257 | MS.gene28021:intron | 35.0% |
| !! | CTCGTACTTATTGATGATGA+TGG | - | chr4.4:11347141-11347160 | MS.gene28021:intron | 35.0% |
| !! | TAGTTATGTGATGGATCAAC+TGG | - | chr4.4:11342479-11342498 | MS.gene28021:intron | 35.0% |
| !! | TTTTCTTTGTTTGTGTGGAC+AGG | + | chr4.4:11344422-11344441 | None:intergenic | 35.0% |
| !!! | ACAACTGATGCCATTTTTTG+AGG | - | chr4.4:11347410-11347429 | MS.gene28021:intron | 35.0% |
| !!! | ACTTCCTCCTTTTTTGGATT+TGG | - | chr4.4:11343695-11343714 | MS.gene28021:intron | 35.0% |
| !!! | CTCTTTTGCTGCTTTTTCTT+CGG | + | chr4.4:11345435-11345454 | None:intergenic | 35.0% |
| !!! | TCTTTTGCTGCTTTTTCTTC+GGG | + | chr4.4:11345434-11345453 | None:intergenic | 35.0% |
| AAACATTCTCATGACCTGTG+GGG | - | chr4.4:11347281-11347300 | MS.gene28021:intron | 40.0% | |
| AAAGTTGCATACAGTACGTG+GGG | + | chr4.4:11347487-11347506 | None:intergenic | 40.0% | |
| AACAACCACACCTATTCTCA+TGG | - | chr4.4:11344853-11344872 | MS.gene28021:intron | 40.0% | |
| AACCAAGAAGCCAACAACAA+AGG | + | chr4.4:11343586-11343605 | None:intergenic | 40.0% | |
| AACGTTTAATTCCATGGGCT+GGG | - | chr4.4:11347312-11347331 | MS.gene28021:intron | 40.0% | |
| AATTCAGACTCTTCGGATCA+AGG | - | chr4.4:11343734-11343753 | MS.gene28021:intron | 40.0% | |
| ACAACCACACCTATTCTCAT+GGG | - | chr4.4:11344854-11344873 | MS.gene28021:intron | 40.0% | |
| ACCAAGAAGCCAACAACAAA+GGG | + | chr4.4:11343585-11343604 | None:intergenic | 40.0% | |
| ACGAACCGATAAGAACGATT+CGG | + | chr4.4:11342364-11342383 | None:intergenic | 40.0% | |
| ACTCATGTTCATCGTAGACA+TGG | - | chr4.4:11345204-11345223 | MS.gene28021:intron | 40.0% | |
| AGAACTCTTGGCTGAAGATA+TGG | - | chr4.4:11347807-11347826 | MS.gene28021:CDS | 40.0% | |
| AGACAGCAGAATTCACAGAA+TGG | + | chr4.4:11346728-11346747 | None:intergenic | 40.0% | |
| AGAGTGACTTATGGCAGATA+TGG | + | chr4.4:11344507-11344526 | None:intergenic | 40.0% | |
| ATGAGAATAGGTGTGGTTGT+TGG | + | chr4.4:11344854-11344873 | None:intergenic | 40.0% | |
| ATGCATTCACTCACACCATA+CGG | - | chr4.4:11347781-11347800 | MS.gene28021:CDS | 40.0% | |
| CAAAGTTGCATACAGTACGT+GGG | + | chr4.4:11347488-11347507 | None:intergenic | 40.0% | |
| CACACAAACAAAGAAAAGCG+AGG | - | chr4.4:11344425-11344444 | MS.gene28021:intron | 40.0% | |
| CATGGGAAATTCAGACTCTT+CGG | - | chr4.4:11343727-11343746 | MS.gene28021:intron | 40.0% | |
| CGAAGAAAAAGCAGCAAAAG+AGG | - | chr4.4:11345433-11345452 | MS.gene28021:intron | 40.0% | |
| CGTTGAGATTTGAAGGTAAG+TGG | + | chr4.4:11342081-11342100 | None:intergenic | 40.0% | |
| CTACTAAAGAGTAGGAATGG+AGG | - | chr4.4:11343266-11343285 | MS.gene28021:intron | 40.0% | |
| CTCATGTTCATCGTAGACAT+GGG | - | chr4.4:11345205-11345224 | MS.gene28021:intron | 40.0% | |
| CTCGAAAAACATCGCAGAAA+CGG | - | chr4.4:11342267-11342286 | MS.gene28021:intron | 40.0% | |
| GAAAGAGATGAAGTTGTTGG+AGG | + | chr4.4:11342329-11342348 | None:intergenic | 40.0% | |
| GAATAATCATGTATCTGGGG+AGG | - | chr4.4:11343662-11343681 | MS.gene28021:intron | 40.0% | |
| GAGAATAGTCTAGCAAACCT+TGG | + | chr4.4:11344922-11344941 | None:intergenic | 40.0% | |
| GATATGCTTGTCACACTTCT+TGG | - | chr4.4:11343926-11343945 | MS.gene28021:intron | 40.0% | |
| GCTTTCAGCAACCTTATTGA+AGG | - | chr4.4:11347048-11347067 | MS.gene28021:intron | 40.0% | |
| GGGTAAGTCTATGAAGATGT+GGG | - | chr4.4:11347529-11347548 | MS.gene28021:CDS | 40.0% | |
| GGTAAGTCTATGAAGATGTG+GGG | - | chr4.4:11347530-11347549 | MS.gene28021:CDS | 40.0% | |
| GGTCAGTAGAAACTTTGAGT+TGG | + | chr4.4:11346284-11346303 | None:intergenic | 40.0% | |
| GTGAGTAGACTTCTTTGTCT+TGG | + | chr4.4:11345186-11345205 | None:intergenic | 40.0% | |
| GTTTAGGTAAAGGGTTTCCT+AGG | + | chr4.4:11347641-11347660 | None:intergenic | 40.0% | |
| TAAAGCTGTAGTTCTTCCCA+TGG | - | chr4.4:11343551-11343570 | MS.gene28021:CDS | 40.0% | |
| TAACGAGTGGTTAATAAGCC+AGG | - | chr4.4:11345779-11345798 | MS.gene28021:CDS | 40.0% | |
| TAGAGACCAAATTGGTGAGA+TGG | + | chr4.4:11346216-11346235 | None:intergenic | 40.0% | |
| TATACTGTCTATACAGCCCA+TGG | + | chr4.4:11347389-11347408 | None:intergenic | 40.0% | |
| TCATGTTCATCGTAGACATG+GGG | - | chr4.4:11345206-11345225 | MS.gene28021:intron | 40.0% | |
| TCGAAACTTTATGTGTCCCA+AGG | - | chr4.4:11344902-11344921 | MS.gene28021:intron | 40.0% | |
| TCTGGCTATGGCATATGTTA+TGG | - | chr4.4:11343824-11343843 | MS.gene28021:intron | 40.0% | |
| TGGAATCAGGTAGGTTTGAT+TGG | - | chr4.4:11346630-11346649 | MS.gene28021:intron | 40.0% | |
| TGGACCTGATATGCACTATA+TGG | - | chr4.4:11347161-11347180 | MS.gene28021:intron | 40.0% | |
| TGGTTGAAGACAATATGACG+TGG | - | chr4.4:11347827-11347846 | MS.gene28021:CDS | 40.0% | |
| TGTCTTGAAGCGAAAGAAAG+AGG | + | chr4.4:11345576-11345595 | None:intergenic | 40.0% | |
| TGTTGACATTTCACAGTCTC+TGG | - | chr4.4:11343806-11343825 | MS.gene28021:intron | 40.0% | |
| TTAAAAAGCCTCGGGATCAT+TGG | - | chr4.4:11344700-11344719 | MS.gene28021:intron | 40.0% | |
| TTAGATAGTTCTCCAAGGGA+TGG | - | chr4.4:11346502-11346521 | MS.gene28021:CDS | 40.0% | |
| TTATTAACAGAGCCATCCCT+TGG | + | chr4.4:11346517-11346536 | None:intergenic | 40.0% | |
| TTGTGCAGCAAGGAAATGTT+TGG | + | chr4.4:11347588-11347607 | None:intergenic | 40.0% | |
| ! | AAAGGAAAGTGCATAAGCAG+GGG | + | chr4.4:11347212-11347231 | None:intergenic | 40.0% |
| ! | AGGAACGAATATATGGTGGA+AGG | + | chr4.4:11345599-11345618 | None:intergenic | 40.0% |
| ! | CTTCTTGGATTTTGTTGGAG+TGG | - | chr4.4:11343941-11343960 | MS.gene28021:intron | 40.0% |
| ! | GGAGTAAAGCACCTTCAATA+AGG | + | chr4.4:11347062-11347081 | None:intergenic | 40.0% |
| ! | GTTTAAGACTTGGCTTGATC+CGG | - | chr4.4:11345132-11345151 | MS.gene28021:intron | 40.0% |
| ! | TGTAGAACTTTGGCTTCCAA+TGG | - | chr4.4:11347963-11347982 | MS.gene28021:CDS | 40.0% |
| !! | AGTCATTTTAATGTTCCCGC+CGG | - | chr4.4:11342573-11342592 | MS.gene28021:intron | 40.0% |
| !! | CGTTTTTGATTCTGAGCAAG+AGG | + | chr4.4:11346961-11346980 | None:intergenic | 40.0% |
| !! | CTCGCTTTTCTTTGTTTGTG+TGG | + | chr4.4:11344427-11344446 | None:intergenic | 40.0% |
| !! | GACCTAAATTTCTGGCTCAT+CGG | - | chr4.4:11344188-11344207 | MS.gene28021:intron | 40.0% |
| !! | TCGTTTTTGTTGTGTTGTGC+AGG | - | chr4.4:11342437-11342456 | MS.gene28021:intron | 40.0% |
| !! | TTCTGAAGTATTGGCAGACT+TGG | - | chr4.4:11346921-11346940 | MS.gene28021:intron | 40.0% |
| AAAAGCAGCAAAAGAGGCTC+TGG | - | chr4.4:11345439-11345458 | MS.gene28021:intron | 45.0% | |
| AAACTCTACATCAGACGCAC+TGG | + | chr4.4:11346380-11346399 | None:intergenic | 45.0% | |
| AAAGCAGCAAAAGAGGCTCT+GGG | - | chr4.4:11345440-11345459 | MS.gene28021:intron | 45.0% | |
| AAAGCTGCAACAGGGTAACT+TGG | - | chr4.4:11345407-11345426 | MS.gene28021:intron | 45.0% | |
| AACGTTCCAAATTTCCCCAC+AGG | + | chr4.4:11347298-11347317 | None:intergenic | 45.0% | |
| AACTTCGCCATCTCATCAGT+TGG | + | chr4.4:11345805-11345824 | None:intergenic | 45.0% | |
| AAGCTGCAACAGGGTAACTT+GGG | - | chr4.4:11345408-11345427 | MS.gene28021:intron | 45.0% | |
| ACCATACGGACAAGAACTCT+TGG | - | chr4.4:11347795-11347814 | MS.gene28021:CDS | 45.0% | |
| ACTACGACATGGAATCAGGT+AGG | - | chr4.4:11346621-11346640 | MS.gene28021:intron | 45.0% | |
| AGAATAGGTGTGGTTGTTGG+AGG | + | chr4.4:11344851-11344870 | None:intergenic | 45.0% | |
| AGGCAATCACCCATGAGAAT+AGG | + | chr4.4:11344866-11344885 | None:intergenic | 45.0% | |
| ATAACTCTCCAGTATCTCCC+GGG | + | chr4.4:11347878-11347897 | None:intergenic | 45.0% | |
| ATACAGCATCCTGGAGTTGT+TGG | + | chr4.4:11345943-11345962 | None:intergenic | 45.0% | |
| ATCACCCATGAGAATAGGTG+TGG | + | chr4.4:11344861-11344880 | None:intergenic | 45.0% | |
| ATGACGTGGAACTTTGTTGC+TGG | - | chr4.4:11347841-11347860 | MS.gene28021:CDS | 45.0% | |
| ATGATGAACCAATGATCCCG+AGG | + | chr4.4:11344711-11344730 | None:intergenic | 45.0% | |
| ATGCTTCGCAGTAGTATCTC+GGG | - | chr4.4:11347509-11347528 | MS.gene28021:CDS | 45.0% | |
| ATTGTTCCGGTGATCGTCAT+CGG | + | chr4.4:11342160-11342179 | None:intergenic | 45.0% | |
| CAATAAGGTTGCTGAAAGCC+TGG | + | chr4.4:11347047-11347066 | None:intergenic | 45.0% | |
| CACCGATGAGCCAGAAATTT+AGG | + | chr4.4:11344193-11344212 | None:intergenic | 45.0% | |
| CATAACTCTCCAGTATCTCC+CGG | + | chr4.4:11347879-11347898 | None:intergenic | 45.0% | |
| CATGCTTCGCAGTAGTATCT+CGG | - | chr4.4:11347508-11347527 | MS.gene28021:CDS | 45.0% | |
| CATGTTCATCGTAGACATGG+GGG | - | chr4.4:11345207-11345226 | MS.gene28021:intron | 45.0% | |
| CATTTCACAGTCTCTGGCTA+TGG | - | chr4.4:11343812-11343831 | MS.gene28021:intron | 45.0% | |
| CCTTTCCTCCAACATGTGTT+CGG | + | chr4.4:11347083-11347102 | None:intergenic | 45.0% | |
| CGAACCGATAAGAACGATTC+GGG | + | chr4.4:11342363-11342382 | None:intergenic | 45.0% | |
| CGGGTAAGTCTATGAAGATG+TGG | - | chr4.4:11347528-11347547 | MS.gene28021:CDS | 45.0% | |
| CGTTCCCGAATCGTTCTTAT+CGG | - | chr4.4:11342356-11342375 | MS.gene28021:intron | 45.0% | |
| CTGTCACCATCTCACCAATT+TGG | - | chr4.4:11346207-11346226 | MS.gene28021:CDS | 45.0% | |
| CTTCTTTGTCTTGGGATCGT+TGG | + | chr4.4:11345177-11345196 | None:intergenic | 45.0% | |
| GAACGTTTAATTCCATGGGC+TGG | - | chr4.4:11347311-11347330 | MS.gene28021:intron | 45.0% | |
| GAAGGAAACAAGAAGGGTTG+CGG | + | chr4.4:11342107-11342126 | None:intergenic | 45.0% | |
| GAATAGGTGTGGTTGTTGGA+GGG | + | chr4.4:11344850-11344869 | None:intergenic | 45.0% | |
| GAATGCTTGAAAGTGGACCA+CGG | + | chr4.4:11344383-11344402 | None:intergenic | 45.0% | |
| GAGCTCGAAACTTGTGTGAA+GGG | - | chr4.4:11343624-11343643 | MS.gene28021:intron | 45.0% | |
| GCAAAGTTGCATACAGTACG+TGG | + | chr4.4:11347489-11347508 | None:intergenic | 45.0% | |
| GCAGCAAGGAAATGTTTGGA+AGG | + | chr4.4:11347584-11347603 | None:intergenic | 45.0% | |
| GCTCAAATCTTTGTGCAGCA+AGG | + | chr4.4:11347598-11347617 | None:intergenic | 45.0% | |
| GCTTTACTCCGAACACATGT+TGG | - | chr4.4:11347072-11347091 | MS.gene28021:intron | 45.0% | |
| GGTGAGATGGTGACAGTTTA+GGG | + | chr4.4:11346203-11346222 | None:intergenic | 45.0% | |
| GTGAAGTTGCACATACCAAC+CGG | + | chr4.4:11343765-11343784 | None:intergenic | 45.0% | |
| GTGTGAAGGGTCAAAGTGAT+GGG | - | chr4.4:11343637-11343656 | MS.gene28021:intron | 45.0% | |
| TACCTGATTCCATGTCGTAG+TGG | + | chr4.4:11346622-11346641 | None:intergenic | 45.0% | |
| TAGATTGACCAACTCCCTAG+CGG | + | chr4.4:11344600-11344619 | None:intergenic | 45.0% | |
| TCAAACACAAACCAGATCCG+TGG | - | chr4.4:11344363-11344382 | MS.gene28021:intron | 45.0% | |
| TCATGACCTGTGGGGAAATT+TGG | - | chr4.4:11347289-11347308 | MS.gene28021:intron | 45.0% | |
| TCCATCACATAACTACCTGC+CGG | + | chr4.4:11342474-11342493 | None:intergenic | 45.0% | |
| TCTCATGGGTGATTGCCTTT+GGG | - | chr4.4:11344868-11344887 | MS.gene28021:intron | 45.0% | |
| TCTTCTACAGCAGCTAGCAA+AGG | + | chr4.4:11347012-11347031 | None:intergenic | 45.0% | |
| TGAAGCGAAAGAAAGAGGAC+TGG | + | chr4.4:11345571-11345590 | None:intergenic | 45.0% | |
| TGACGTGGAACTTTGTTGCT+GGG | - | chr4.4:11347842-11347861 | MS.gene28021:CDS | 45.0% | |
| TGAGCAACACACCTGCATTT+CGG | + | chr4.4:11342625-11342644 | None:intergenic | 45.0% | |
| TGAGCCTGACCGTTAATTGT+AGG | - | chr4.4:11343509-11343528 | MS.gene28021:CDS | 45.0% | |
| TGATGTTCTCCAACAACTCC+AGG | - | chr4.4:11345931-11345950 | MS.gene28021:intron | 45.0% | |
| TGGTGAGATGGTGACAGTTT+AGG | + | chr4.4:11346204-11346223 | None:intergenic | 45.0% | |
| TGTGTGAAGGGTCAAAGTGA+TGG | - | chr4.4:11343636-11343655 | MS.gene28021:intron | 45.0% | |
| TTACTCCGAACACATGTTGG+AGG | - | chr4.4:11347075-11347094 | MS.gene28021:intron | 45.0% | |
| TTCTCATGGGTGATTGCCTT+TGG | - | chr4.4:11344867-11344886 | MS.gene28021:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr4.4:11347340-11347359 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.4:11347341-11347360 | None:intergenic | 45.0% |
| ! | CGGATCTGGTTTGTGTTTGA+AGG | + | chr4.4:11344363-11344382 | None:intergenic | 45.0% |
| ! | GTATACTTTAGGGGCTGAGT+AGG | - | chr4.4:11343431-11343450 | MS.gene28021:CDS | 45.0% |
| ! | TGTGGACAGGATTTTACCCA+AGG | + | chr4.4:11344409-11344428 | None:intergenic | 45.0% |
| !! | AAGGGGCATCTCTATATCCT+GGG | + | chr4.4:11346581-11346600 | None:intergenic | 45.0% |
| !! | AGTAAGAGTATCGTTCCGCT+AGG | - | chr4.4:11344582-11344601 | MS.gene28021:intron | 45.0% |
| !! | ATACACTCACTGACTTCGAG+AGG | + | chr4.4:11344827-11344846 | None:intergenic | 45.0% |
| !! | GGTTAGCGTTGATGGTTTGA+AGG | + | chr4.4:11342125-11342144 | None:intergenic | 45.0% |
| !! | GTAAGAGTATCGTTCCGCTA+GGG | - | chr4.4:11344583-11344602 | MS.gene28021:intron | 45.0% |
| !! | TCCCTTTGTTGTTGGCTTCT+TGG | - | chr4.4:11343581-11343600 | MS.gene28021:CDS | 45.0% |
| AAAGATGCTCCACTTGGAGC+TGG | - | chr4.4:11347931-11347950 | MS.gene28021:CDS | 50.0% | |
| AAGATGCTCCACTTGGAGCT+GGG | - | chr4.4:11347932-11347951 | MS.gene28021:CDS | 50.0% | |
| ACCAAGTCAGAAGCTTGGCA+CGG | + | chr4.4:11345499-11345518 | None:intergenic | 50.0% | |
| ACCGGCAGGTAGTTATGTGA+TGG | - | chr4.4:11342470-11342489 | MS.gene28021:intron | 50.0% | |
| AGCGAGAGCTAAAGGTGGAA+GGG | + | chr4.4:11346599-11346618 | None:intergenic | 50.0% | |
| AGGCAGAGTCGATGGAAATC+GGG | + | chr4.4:11342309-11342328 | None:intergenic | 50.0% | |
| AGTCGATGGAAATCGGGACT+AGG | + | chr4.4:11342303-11342322 | None:intergenic | 50.0% | |
| CAAGTTTCGAGCTCCACCAA+TGG | + | chr4.4:11343618-11343637 | None:intergenic | 50.0% | |
| CACCTGCATTTCGGAAAGTG+CGG | + | chr4.4:11342616-11342635 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.4:11347339-11347358 | MS.gene28021:intron | 50.0% | |
| CCGAACACATGTTGGAGGAA+AGG | - | chr4.4:11347080-11347099 | MS.gene28021:intron | 50.0% | |
| CGGGAGATACTGGAGAGTTA+TGG | - | chr4.4:11347877-11347896 | MS.gene28021:CDS | 50.0% | |
| CGTCATCGGAATCGGAGTTA+GGG | + | chr4.4:11342146-11342165 | None:intergenic | 50.0% | |
| CTCCACTACGACATGGAATC+AGG | - | chr4.4:11346617-11346636 | MS.gene28021:intron | 50.0% | |
| CTTGGTTGCTGAGCTTCCAT+TGG | - | chr4.4:11343599-11343618 | MS.gene28021:CDS | 50.0% | |
| GAACGCGGAGGGTTTGATAA+TGG | + | chr4.4:11345034-11345053 | None:intergenic | 50.0% | |
| GAGGCAGAGTCGATGGAAAT+CGG | + | chr4.4:11342310-11342329 | None:intergenic | 50.0% | |
| GATGCTGAGTCAGACGAAGA+AGG | - | chr4.4:11342534-11342553 | MS.gene28021:intron | 50.0% | |
| GCAGCAGCACTAAGAGAAAG+TGG | + | chr4.4:11346559-11346578 | None:intergenic | 50.0% | |
| GCCAAGAGTTCTTGTCCGTA+TGG | + | chr4.4:11347799-11347818 | None:intergenic | 50.0% | |
| GCGGCATCGTTGAGATTTGA+AGG | + | chr4.4:11342088-11342107 | None:intergenic | 50.0% | |
| GGAGCTCGAAACTTGTGTGA+AGG | - | chr4.4:11343623-11343642 | MS.gene28021:intron | 50.0% | |
| GGAGGTGGAGACTTTACGAA+TGG | + | chr4.4:11342226-11342245 | None:intergenic | 50.0% | |
| GGGGAACTCGTGTAGAACTT+TGG | - | chr4.4:11347953-11347972 | MS.gene28021:CDS | 50.0% | |
| GGTGGAGACTTTACGAATGG+CGG | + | chr4.4:11342223-11342242 | None:intergenic | 50.0% | |
| GTACCCCACTTAGTGGGATA+AGG | - | chr4.4:11347334-11347353 | MS.gene28021:intron | 50.0% | |
| GTTGAGGATATCTTGGCGCT+AGG | - | chr4.4:11345896-11345915 | MS.gene28021:intron | 50.0% | |
| TCAAACTGTGGAAGCGAACG+CGG | + | chr4.4:11345049-11345068 | None:intergenic | 50.0% | |
| TCGATCTTCAAGGGTCCCAA+AGG | + | chr4.4:11344886-11344905 | None:intergenic | 50.0% | |
| TCGTCATCGGAATCGGAGTT+AGG | + | chr4.4:11342147-11342166 | None:intergenic | 50.0% | |
| TCGTGCGCATTATATCACCC+CGG | - | chr4.4:11347905-11347924 | MS.gene28021:CDS | 50.0% | |
| TCTTCGGATCAAGGATGAGC+CGG | - | chr4.4:11343743-11343762 | MS.gene28021:intron | 50.0% | |
| TGTGCAGGTGTACGTTAGAC+CGG | - | chr4.4:11342452-11342471 | MS.gene28021:intron | 50.0% | |
| TTCCCACCAAGTCAGAAGCT+TGG | + | chr4.4:11345504-11345523 | None:intergenic | 50.0% | |
| TTGAAAGTGGACCACGGATC+TGG | + | chr4.4:11344377-11344396 | None:intergenic | 50.0% | |
| ! | AAGTGGAGCATCTTTGGTCC+GGG | + | chr4.4:11347926-11347945 | None:intergenic | 50.0% |
| ! | AGCTCCAAGTGGAGCATCTT+TGG | + | chr4.4:11347932-11347951 | None:intergenic | 50.0% |
| ! | CAAGTGGAGCATCTTTGGTC+CGG | + | chr4.4:11347927-11347946 | None:intergenic | 50.0% |
| ! | CATTTCGGAAAGTGCGGTCT+CGG | + | chr4.4:11342610-11342629 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.4:11347342-11347361 | None:intergenic | 50.0% |
| ! | GGAGTTAGGGTTAGCGTTGA+TGG | + | chr4.4:11342133-11342152 | None:intergenic | 50.0% |
| ! | GTGGGATAAGGCTTGGTTGT+TGG | - | chr4.4:11347346-11347365 | MS.gene28021:intron | 50.0% |
| ! | TGATGGATCAACTGGAGCTG+CGG | - | chr4.4:11342487-11342506 | MS.gene28021:intron | 50.0% |
| !! | GAAGGGGCATCTCTATATCC+TGG | + | chr4.4:11346582-11346601 | None:intergenic | 50.0% |
| !! | TGAGGGTGGTGGAATTGTTC+CGG | + | chr4.4:11342173-11342192 | None:intergenic | 50.0% |
| !! | TGCCAAGCTTCTGACTTGGT+GGG | - | chr4.4:11345499-11345518 | MS.gene28021:intron | 50.0% |
| AATGGAGGGAGTAGTCCCTC+TGG | - | chr4.4:11343281-11343300 | MS.gene28021:intron | 55.0% | |
| AGATGCTCCACTTGGAGCTG+GGG | - | chr4.4:11347933-11347952 | MS.gene28021:CDS | 55.0% | |
| AGCCAGGCCAACTGATGAGA+TGG | - | chr4.4:11345795-11345814 | MS.gene28021:CDS | 55.0% | |
| AGTCGCTGAGTGAACTCGAC+AGG | + | chr4.4:11342249-11342268 | None:intergenic | 55.0% | |
| AGTGGAGCGAGAGCTAAAGG+TGG | + | chr4.4:11346604-11346623 | None:intergenic | 55.0% | |
| CCGATTCCGATGACGATCAC+CGG | - | chr4.4:11342151-11342170 | MS.gene28021:CDS | 55.0% | |
| CCGGTGATCGTCATCGGAAT+CGG | + | chr4.4:11342154-11342173 | None:intergenic | 55.0% | |
| CGGACCAAAGATGCTCCACT+TGG | - | chr4.4:11347925-11347944 | MS.gene28021:CDS | 55.0% | |
| CTGACTCAGCATCTCCTCCA+GGG | + | chr4.4:11342527-11342546 | None:intergenic | 55.0% | |
| GACCGCACTTTCCGAAATGC+AGG | - | chr4.4:11342611-11342630 | MS.gene28021:intron | 55.0% | |
| GACTATTGCCCGGGAGATAC+TGG | - | chr4.4:11347867-11347886 | MS.gene28021:CDS | 55.0% | |
| GAGCGAGAGCTAAAGGTGGA+AGG | + | chr4.4:11346600-11346619 | None:intergenic | 55.0% | |
| GCGAGAGCTAAAGGTGGAAG+GGG | + | chr4.4:11346598-11346617 | None:intergenic | 55.0% | |
| GGAGACTTTACGAATGGCGG+AGG | + | chr4.4:11342220-11342239 | None:intergenic | 55.0% | |
| GGTTGCTGAGCTTCCATTGG+TGG | - | chr4.4:11343602-11343621 | MS.gene28021:CDS | 55.0% | |
| GTATCGTTCCGCTAGGGAGT+TGG | - | chr4.4:11344589-11344608 | MS.gene28021:intron | 55.0% | |
| GTCGCTGAGTGAACTCGACA+GGG | + | chr4.4:11342248-11342267 | None:intergenic | 55.0% | |
| GTGTCTACTTCTGCACCAGC+TGG | - | chr4.4:11347111-11347130 | MS.gene28021:intron | 55.0% | |
| GTTGTTGGAGGCAGAGTCGA+TGG | + | chr4.4:11342317-11342336 | None:intergenic | 55.0% | |
| TCGCTGAGTGAACTCGACAG+GGG | + | chr4.4:11342247-11342266 | None:intergenic | 55.0% | |
| TCTACTTCTGCACCAGCTGG+TGG | - | chr4.4:11347114-11347133 | MS.gene28021:intron | 55.0% | |
| TCTGACTCAGCATCTCCTCC+AGG | + | chr4.4:11342528-11342547 | None:intergenic | 55.0% | |
| TTCGATAGGCCGTGCACTTG+CGG | + | chr4.4:11344550-11344569 | None:intergenic | 55.0% | |
| TTGCTGGGCTGACTATTGCC+CGG | - | chr4.4:11347857-11347876 | MS.gene28021:CDS | 55.0% | |
| ! | AGTGGAGCATCTTTGGTCCG+GGG | + | chr4.4:11347925-11347944 | None:intergenic | 55.0% |
| ! | CGTAGTGGAGCGAGAGCTAA+AGG | + | chr4.4:11346607-11346626 | None:intergenic | 55.0% |
| ! | TTCTCTTAGTGCTGCTGCCC+AGG | - | chr4.4:11346561-11346580 | MS.gene28021:intron | 55.0% |
| !! | GTGCCAAGCTTCTGACTTGG+TGG | - | chr4.4:11345498-11345517 | MS.gene28021:intron | 55.0% |
| AACTGTGGAAGCGAACGCGG+AGG | + | chr4.4:11345046-11345065 | None:intergenic | 60.0% | |
| ACTGTGGAAGCGAACGCGGA+GGG | + | chr4.4:11345045-11345064 | None:intergenic | 60.0% | |
| AGAAGAACCTGCTCTGCGCC+AGG | - | chr4.4:11347026-11347045 | MS.gene28021:intron | 60.0% | |
| AGGGCCAAACCGCAAGTGCA+CGG | - | chr4.4:11344538-11344557 | MS.gene28021:intron | 60.0% | |
| AGGGTTGCAGTGTACCCTGG+AGG | - | chr4.4:11342510-11342529 | MS.gene28021:intron | 60.0% | |
| AGTGAACTCGACAGGGGAGG+TGG | + | chr4.4:11342241-11342260 | None:intergenic | 60.0% | |
| CAGGTGTACGTTAGACCGGC+AGG | - | chr4.4:11342456-11342475 | MS.gene28021:intron | 60.0% | |
| CGCCATCTCATCAGTTGGCC+TGG | + | chr4.4:11345800-11345819 | None:intergenic | 60.0% | |
| CGGATCAAGGATGAGCCGGT+TGG | - | chr4.4:11343747-11343766 | MS.gene28021:intron | 60.0% | |
| CTGAGTGAACTCGACAGGGG+AGG | + | chr4.4:11342244-11342263 | None:intergenic | 60.0% | |
| GATGCTCCACTTGGAGCTGG+GGG | - | chr4.4:11347934-11347953 | MS.gene28021:CDS | 60.0% | |
| GCCAGTGCCAACATGTGGCA+CGG | + | chr4.4:11345477-11345496 | None:intergenic | 60.0% | |
| GCCGTGCCAAGCTTCTGACT+TGG | - | chr4.4:11345495-11345514 | MS.gene28021:intron | 60.0% | |
| GCTCTCGCTCCACTACGACA+TGG | - | chr4.4:11346610-11346629 | MS.gene28021:intron | 60.0% | |
| GGATCAACTGGAGCTGCGGA+GGG | - | chr4.4:11342491-11342510 | MS.gene28021:intron | 60.0% | |
| GGCTGGGTACCCCACTTAGT+GGG | - | chr4.4:11347328-11347347 | MS.gene28021:intron | 60.0% | |
| GGTCTCGGCAGATCGCAATC+CGG | + | chr4.4:11342595-11342614 | None:intergenic | 60.0% | |
| TAGGCCGTGCACTTGCGGTT+TGG | + | chr4.4:11344545-11344564 | None:intergenic | 60.0% | |
| TGCTGGGCTGACTATTGCCC+GGG | - | chr4.4:11347858-11347877 | MS.gene28021:CDS | 60.0% | |
| TGGATCAACTGGAGCTGCGG+AGG | - | chr4.4:11342490-11342509 | MS.gene28021:intron | 60.0% | |
| ! | TAAGTGGGGTACCCAGCCCA+TGG | + | chr4.4:11347326-11347345 | None:intergenic | 60.0% |
| !! | GCAAAAGAGGCTCTGGGAGG+TGG | - | chr4.4:11345446-11345465 | MS.gene28021:intron | 60.0% |
| !! | GCAGCAAAAGAGGCTCTGGG+AGG | - | chr4.4:11345443-11345462 | MS.gene28021:intron | 60.0% |
| CGAGTTCCCCCAGCTCCAAG+TGG | + | chr4.4:11347943-11347962 | None:intergenic | 65.0% | |
| CGGAGGGTTGCAGTGTACCC+TGG | - | chr4.4:11342507-11342526 | MS.gene28021:intron | 65.0% | |
| CTCGGCAGATCGCAATCCGG+CGG | + | chr4.4:11342592-11342611 | None:intergenic | 65.0% | |
| CTGAAAGCCTGGCGCAGAGC+AGG | + | chr4.4:11347036-11347055 | None:intergenic | 65.0% | |
| GCACGGCCAGTGCCAACATG+TGG | + | chr4.4:11345482-11345501 | None:intergenic | 65.0% | |
| GCCGTGCCACATGTTGGCAC+TGG | - | chr4.4:11345473-11345492 | MS.gene28021:intron | 65.0% | |
| GGGCTGGGTACCCCACTTAG+TGG | - | chr4.4:11347327-11347346 | MS.gene28021:intron | 65.0% | |
| TCGGCAGATCGCAATCCGGC+GGG | + | chr4.4:11342591-11342610 | None:intergenic | 65.0% | |
| !! | AGAGGCTCTGGGAGGTGGCA+CGG | - | chr4.4:11345451-11345470 | MS.gene28021:intron | 65.0% |
| !! | AGTACGAGGGTGCCACCAGC+TGG | + | chr4.4:11347129-11347148 | None:intergenic | 65.0% |
| GAGTGCGCGGGTGGAGGAGA+GGG | + | chr4.4:11342196-11342215 | None:intergenic | 70.0% | |
| GCGGGTGGAGGAGAGGGTGA+GGG | + | chr4.4:11342190-11342209 | None:intergenic | 70.0% | |
| GGAGGAGAGGGTGAGGGTGG+TGG | + | chr4.4:11342184-11342203 | None:intergenic | 70.0% | |
| GGCACGGCCGTGCCACATGT+TGG | - | chr4.4:11345467-11345486 | MS.gene28021:intron | 70.0% | |
| GGTGGAGGAGAGGGTGAGGG+TGG | + | chr4.4:11342187-11342206 | None:intergenic | 70.0% | |
| ! | AATGGCGGAGGCGAGTGCGC+GGG | + | chr4.4:11342208-11342227 | None:intergenic | 70.0% |
| ! | GAATGGCGGAGGCGAGTGCG+CGG | + | chr4.4:11342209-11342228 | None:intergenic | 70.0% |
| CGAGTGCGCGGGTGGAGGAG+AGG | + | chr4.4:11342197-11342216 | None:intergenic | 75.0% | |
| CGCGGGTGGAGGAGAGGGTG+AGG | + | chr4.4:11342191-11342210 | None:intergenic | 75.0% | |
| ! | GGAGGCGAGTGCGCGGGTGG+AGG | + | chr4.4:11342202-11342221 | None:intergenic | 80.0% |
| ! | GGCGGAGGCGAGTGCGCGGG+TGG | + | chr4.4:11342205-11342224 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11342048 | 11348008 | 11342048 | ID=MS.gene28021 |
| chr4.4 | mRNA | 11342048 | 11348008 | 11342048 | ID=MS.gene28021.t1;Parent=MS.gene28021 |
| chr4.4 | exon | 11347679 | 11348008 | 11347679 | ID=MS.gene28021.t1.exon1;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11347679 | 11348008 | 11347679 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| chr4.4 | exon | 11347424 | 11347597 | 11347424 | ID=MS.gene28021.t1.exon2;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11347424 | 11347597 | 11347424 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| chr4.4 | exon | 11346205 | 11346525 | 11346205 | ID=MS.gene28021.t1.exon3;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11346205 | 11346525 | 11346205 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| chr4.4 | exon | 11345760 | 11345825 | 11345760 | ID=MS.gene28021.t1.exon4;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11345760 | 11345825 | 11345760 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| chr4.4 | exon | 11345610 | 11345678 | 11345610 | ID=MS.gene28021.t1.exon5;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11345610 | 11345678 | 11345610 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| chr4.4 | exon | 11344083 | 11344175 | 11344083 | ID=MS.gene28021.t1.exon6;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11344083 | 11344175 | 11344083 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| chr4.4 | exon | 11343418 | 11343641 | 11343418 | ID=MS.gene28021.t1.exon7;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11343418 | 11343641 | 11343418 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| chr4.4 | exon | 11342874 | 11343147 | 11342874 | ID=MS.gene28021.t1.exon8;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11342874 | 11343147 | 11342874 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| chr4.4 | exon | 11342048 | 11342281 | 11342048 | ID=MS.gene28021.t1.exon9;Parent=MS.gene28021.t1 |
| chr4.4 | CDS | 11342048 | 11342281 | 11342048 | ID=cds.MS.gene28021.t1;Parent=MS.gene28021.t1 |
| Gene Sequence |
| Protein sequence |
