Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28153.t1 | XP_003630114.1 | 99.7 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 2.00E-190 | 674.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28153.t1 | Q9C5J9 | 77.3 | 348 | 64 | 7 | 2 | 342 | 3 | 342 | 1.9e-141 | 503.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28153.t1 | G7LBB0 | 99.7 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 1.5e-190 | 674.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene28153 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene28153 | 0.806497 | 7.99E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene28153 | 0.83089 | 2.28E-55 | -1.69E-46 |
| MS.gene054005 | MS.gene28153 | 0.826541 | 2.56E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63514 | MS.gene28153 | PPI |
| MS.gene28153 | MS.gene56256 | PPI |
| MS.gene009458 | MS.gene28153 | PPI |
| MS.gene51627 | MS.gene28153 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28153.t1 | MTR_8g091980 | 99.708 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 0.0 | 697 |
| MS.gene28153.t1 | MTR_8g091980 | 99.640 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 0.0 | 569 |
| MS.gene28153.t1 | MTR_7g103070 | 28.369 | 141 | 76 | 3 | 23 | 162 | 18 | 134 | 1.21e-12 | 66.6 |
| MS.gene28153.t1 | MTR_1g029450 | 30.675 | 163 | 83 | 6 | 23 | 183 | 19 | 153 | 2.61e-12 | 65.9 |
| MS.gene28153.t1 | MTR_1g062760 | 29.078 | 141 | 74 | 4 | 23 | 162 | 16 | 131 | 3.97e-12 | 65.1 |
| MS.gene28153.t1 | MTR_8g006970 | 26.286 | 175 | 96 | 5 | 17 | 189 | 16 | 159 | 4.02e-12 | 65.1 |
| MS.gene28153.t1 | MTR_8g093740 | 31.902 | 163 | 81 | 7 | 23 | 183 | 15 | 149 | 8.75e-12 | 63.9 |
| MS.gene28153.t1 | MTR_8g006970 | 25.749 | 167 | 93 | 4 | 23 | 189 | 10 | 145 | 1.03e-11 | 63.5 |
| MS.gene28153.t1 | MTR_7g081700 | 25.150 | 167 | 94 | 4 | 23 | 189 | 10 | 145 | 4.95e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28153.t1 | AT5G64813 | 77.299 | 348 | 64 | 7 | 2 | 342 | 3 | 342 | 0.0 | 516 |
| MS.gene28153.t1 | AT5G64813 | 77.299 | 348 | 64 | 7 | 2 | 342 | 3 | 342 | 0.0 | 516 |
| MS.gene28153.t1 | AT5G64813 | 77.299 | 348 | 64 | 7 | 2 | 342 | 3 | 342 | 0.0 | 516 |
| MS.gene28153.t1 | AT5G09910 | 70.640 | 344 | 85 | 5 | 2 | 342 | 3 | 333 | 2.35e-164 | 462 |
| MS.gene28153.t1 | AT5G09910 | 70.640 | 344 | 85 | 5 | 2 | 342 | 3 | 333 | 2.35e-164 | 462 |
| MS.gene28153.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 2.98e-145 | 413 |
| MS.gene28153.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 2.98e-145 | 413 |
| MS.gene28153.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 2.98e-145 | 413 |
| MS.gene28153.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 1.19e-13 | 69.7 |
| MS.gene28153.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 1.19e-13 | 69.7 |
| MS.gene28153.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 1.19e-13 | 69.7 |
| MS.gene28153.t1 | AT3G18820 | 25.424 | 177 | 99 | 4 | 22 | 194 | 9 | 156 | 2.22e-12 | 65.9 |
| MS.gene28153.t1 | AT5G03530 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 1.82e-11 | 63.2 |
| MS.gene28153.t1 | AT5G03530 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 1.82e-11 | 63.2 |
| MS.gene28153.t1 | AT2G21880 | 23.936 | 188 | 109 | 5 | 22 | 202 | 10 | 170 | 6.42e-11 | 61.6 |
| MS.gene28153.t1 | AT4G09720 | 28.161 | 174 | 103 | 5 | 22 | 194 | 9 | 161 | 7.66e-11 | 61.6 |
Find 88 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGTTCACCTTATCGTTAA+AGG | 0.183622 | 4.4:+9729345 | MS.gene28153:CDS |
| CCTGTTCCATATATTGTTAT+TGG | 0.188210 | 4.4:+9729869 | MS.gene28153:CDS |
| CATTTCCAGCACACTACTTA+TGG | 0.225792 | 4.4:+9729501 | MS.gene28153:intron |
| TTGTTACCAATAACAATATA+TGG | 0.272612 | 4.4:-9729875 | None:intergenic |
| CACACTACTTATGGAAATTC+TGG | 0.286680 | 4.4:+9729510 | MS.gene28153:CDS |
| GGAACGTGAGAGGGAGAATA+AGG | 0.330995 | 4.4:+9727195 | MS.gene28153:CDS |
| GTTGAACTGTGGGATGTATC+AGG | 0.360390 | 4.4:+9729579 | MS.gene28153:CDS |
| CCTTTGGGATCTGGCGGCCC+TGG | 0.368152 | 4.4:+9729839 | MS.gene28153:CDS |
| TTGAGGCGCTTACTGCAATA+AGG | 0.372575 | 4.4:-9730039 | None:intergenic |
| GCAGCTGAGATTGCTGCAAC+TGG | 0.375965 | 4.4:+9729803 | MS.gene28153:CDS |
| TTCTCATTCTTGCAGGTGTT+GGG | 0.377533 | 4.4:+9729313 | MS.gene28153:intron |
| GAACCAGACAAAGAAAATCT+AGG | 0.383439 | 4.4:-9732037 | None:intergenic |
| ACGCCAATGGGTCGAGAAGC+AGG | 0.392805 | 4.4:+9729958 | MS.gene28153:CDS |
| GATGATCAGTCTTATAATAC+AGG | 0.395791 | 4.4:+9731817 | MS.gene28153:CDS |
| AGGGTTTGGAAACCATGTTC+TGG | 0.396334 | 4.4:+9727170 | None:intergenic |
| CTACTGTACAACCAATTGTC+TGG | 0.410194 | 4.4:-9729389 | None:intergenic |
| GCTCGTCCTTCCCAGACAAT+TGG | 0.412167 | 4.4:+9729378 | MS.gene28153:CDS |
| TAGCTTTCAGAGACCGAAAC+TGG | 0.435235 | 4.4:-9732007 | None:intergenic |
| CTCTCTCAGAATCACCTTTG+AGG | 0.453797 | 4.4:-9729548 | None:intergenic |
| CCAATAACAATATATGGAAC+AGG | 0.458650 | 4.4:-9729869 | None:intergenic |
| AAAAGAAGCAAGGTATGATA+AGG | 0.458953 | 4.4:+9731554 | MS.gene28153:CDS |
| ATTCGCTGAGAAGATCTTTG+AGG | 0.468161 | 4.4:-9731751 | None:intergenic |
| GTCTGGGAAGGACGAGCAAT+GGG | 0.472190 | 4.4:-9729372 | None:intergenic |
| AGCTGATATTGTTGCAAAAG+AGG | 0.478431 | 4.4:+9729898 | MS.gene28153:CDS |
| CGAAGACTAGTTTGCAGAAG+TGG | 0.478441 | 4.4:+9729780 | MS.gene28153:CDS |
| CTATCCTCAACAACCAGTTT+CGG | 0.481026 | 4.4:+9731994 | MS.gene28153:CDS |
| AGATTGCGTTGAGCCGGAAG+TGG | 0.491900 | 4.4:-9731953 | None:intergenic |
| GTGCTCGTTGTTGGTGACTC+AGG | 0.492664 | 4.4:+9727253 | MS.gene28153:CDS |
| CTCACGTTCCCTCCAGAACA+TGG | 0.493187 | 4.4:-9727182 | None:intergenic |
| GGAGTTAGATTGCGTTGAGC+CGG | 0.493866 | 4.4:-9731959 | None:intergenic |
| AACCCTGCTTCTCGACCCAT+TGG | 0.497798 | 4.4:-9729961 | None:intergenic |
| GGTCAGTGGAAGCTCCTCGC+TGG | 0.499687 | 4.4:-9729993 | None:intergenic |
| TTGTTGATGTTGCACGCCAA+TGG | 0.504775 | 4.4:+9729945 | MS.gene28153:CDS |
| CATAACGGTGGAGTGCTTTG+TGG | 0.506067 | 4.4:+9727220 | MS.gene28153:CDS |
| ATGAAATACCTGCACCTACA+TGG | 0.516650 | 4.4:+9731716 | MS.gene28153:CDS |
| TGGGAGAACCTTTAACGATA+AGG | 0.517212 | 4.4:-9729353 | None:intergenic |
| AACGATAAGGTGAACTAAAG+AGG | 0.519763 | 4.4:-9729340 | None:intergenic |
| TTGGGATCTGGCGGCCCTGG+TGG | 0.522309 | 4.4:+9729842 | MS.gene28153:CDS |
| TGTTGATGTTGCACGCCAAT+GGG | 0.527951 | 4.4:+9729946 | MS.gene28153:CDS |
| TGAGGATAGAGTGTGGGTGG+TGG | 0.530789 | 4.4:-9731980 | None:intergenic |
| GAGATTTCTTTGTTGAACTG+TGG | 0.535232 | 4.4:+9729568 | MS.gene28153:CDS |
| TGAGAAGATCTTTGAGGTGA+AGG | 0.537945 | 4.4:-9731745 | None:intergenic |
| AGATCTTTGAGGTGAAGGAA+TGG | 0.539829 | 4.4:-9731740 | None:intergenic |
| AGTGGAAGCTCCTCGCTGGA+TGG | 0.540163 | 4.4:-9729989 | None:intergenic |
| TACTGTACAACCAATTGTCT+GGG | 0.540418 | 4.4:-9729388 | None:intergenic |
| CAAGTCAGAGTGCTCGTTGT+TGG | 0.544697 | 4.4:+9727244 | MS.gene28153:CDS |
| AACCAGACAAAGAAAATCTA+GGG | 0.551575 | 4.4:-9732036 | None:intergenic |
| GGAAGCATGTTATACTTGTA+CGG | 0.551656 | 4.4:-9731929 | None:intergenic |
| AGATTTCTTTGTTGAACTGT+GGG | 0.551856 | 4.4:+9729569 | MS.gene28153:CDS |
| GGAATGGACCATGTAGGTGC+AGG | 0.556023 | 4.4:-9731724 | None:intergenic |
| CAGCTGAGATTGCTGCAACT+GGG | 0.556342 | 4.4:+9729804 | MS.gene28153:CDS |
| TGTCTGGGAAGGACGAGCAA+TGG | 0.556939 | 4.4:-9729373 | None:intergenic |
| TGTTGAGGATAGAGTGTGGG+TGG | 0.563767 | 4.4:-9731983 | None:intergenic |
| TCTGTGAATAAAAGAGAGAT+CGG | 0.566338 | 4.4:-9729623 | None:intergenic |
| GATTGCGTTGAGCCGGAAGT+GGG | 0.566553 | 4.4:-9731952 | None:intergenic |
| GCTGATATTGTTGCAAAAGA+GGG | 0.567194 | 4.4:+9729899 | MS.gene28153:CDS |
| GCAATAAGGCCTCCACCACC+AGG | 0.569478 | 4.4:-9730025 | None:intergenic |
| AGCTCTTCAAGTAGCCTCAA+AGG | 0.575296 | 4.4:+9729534 | MS.gene28153:CDS |
| CGCCAATGGGTCGAGAAGCA+GGG | 0.583957 | 4.4:+9729959 | MS.gene28153:CDS |
| GAGGGTGCGAGAGGAAGCAG+CGG | 0.585539 | 4.4:+9729917 | MS.gene28153:CDS |
| AGAAGCAAGGTATGATAAGG+AGG | 0.588578 | 4.4:+9731557 | MS.gene28153:CDS |
| TTGCGTTGAGCCGGAAGTGG+GGG | 0.590536 | 4.4:-9731950 | None:intergenic |
| CCAGGAAAACTCTCGGTCAG+TGG | 0.591587 | 4.4:-9730007 | None:intergenic |
| TATGGAACAGGAAGACCACC+AGG | 0.593874 | 4.4:-9729857 | None:intergenic |
| TCCACCACCAGGAAAACTCT+CGG | 0.595121 | 4.4:-9730014 | None:intergenic |
| TGTTCTGGAGGGAACGTGAG+AGG | 0.595631 | 4.4:+9727185 | MS.gene28153:CDS |
| GTTTGGAAACCATGTTCTGG+AGG | 0.608805 | 4.4:+9727173 | None:intergenic |
| CCAGGGCCGCCAGATCCCAA+AGG | 0.609580 | 4.4:-9729839 | None:intergenic |
| GTACAACCAATTGTCTGGGA+AGG | 0.616763 | 4.4:-9729384 | None:intergenic |
| TGGTTGTACAGTAGATGTGA+AGG | 0.618127 | 4.4:+9729398 | MS.gene28153:CDS |
| GTTCTGGAGGGAACGTGAGA+GGG | 0.619113 | 4.4:+9727186 | MS.gene28153:CDS |
| GAAGACTAGTTTGCAGAAGT+GGG | 0.629867 | 4.4:+9729781 | MS.gene28153:CDS |
| TACAGGCAGCAAAAGAAGCA+AGG | 0.630672 | 4.4:+9731544 | MS.gene28153:intron |
| GAGACCGAAACTGGTTGTTG+AGG | 0.633597 | 4.4:-9731998 | None:intergenic |
| TTTGGAAACCATGTTCTGGA+GGG | 0.634282 | 4.4:+9727174 | None:intergenic |
| GGTTGTTGAGGATAGAGTGT+GGG | 0.640336 | 4.4:-9731986 | None:intergenic |
| AGGGAGAATAAGGAACATAA+CGG | 0.642381 | 4.4:+9727205 | MS.gene28153:CDS |
| GTTGCAAAAGAGGGTGCGAG+AGG | 0.651488 | 4.4:+9729908 | MS.gene28153:CDS |
| ATTGCGTTGAGCCGGAAGTG+GGG | 0.655325 | 4.4:-9731951 | None:intergenic |
| AGGGTGCGAGAGGAAGCAGC+GGG | 0.661507 | 4.4:+9729918 | MS.gene28153:CDS |
| TCAGCTCCTTTGGGATCTGG+CGG | 0.672711 | 4.4:+9729833 | MS.gene28153:CDS |
| ATGATCAGTCTTATAATACA+GGG | 0.679216 | 4.4:+9731818 | MS.gene28153:CDS |
| GAGAATAAGGAACATAACGG+TGG | 0.686740 | 4.4:+9727208 | MS.gene28153:CDS |
| TGGTTGTTGAGGATAGAGTG+TGG | 0.696987 | 4.4:-9731987 | None:intergenic |
| GGGTTTGCTTCCATCCAGCG+AGG | 0.699492 | 4.4:+9729979 | MS.gene28153:CDS |
| GGTGAAGGAATGGACCATGT+AGG | 0.709587 | 4.4:-9731730 | None:intergenic |
| TAGATGAAATATCTTCTCAG+CGG | 0.726315 | 4.4:+9731773 | MS.gene28153:CDS |
| ATGGAACAGGAAGACCACCA+GGG | 0.755247 | 4.4:-9729856 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATCTAAATAGAAAT+AGG | + | chr4.4:9730566-9730585 | MS.gene28153:intron | 10.0% |
| !! | GGTATTTATTATATAATTAA+TGG | - | chr4.4:9728854-9728873 | None:intergenic | 10.0% |
| !!! | AATATTATTTGATTTTGAAT+TGG | + | chr4.4:9728291-9728310 | MS.gene28153:intron | 10.0% |
| !!! | ATAATATTAAATTTTATCAC+AGG | - | chr4.4:9728279-9728298 | None:intergenic | 10.0% |
| !!! | ATTTTTATAAATTAACTTTG+GGG | + | chr4.4:9728433-9728452 | MS.gene28153:intron | 10.0% |
| !!! | CTATTTTTATAAATTAACTT+TGG | + | chr4.4:9728431-9728450 | MS.gene28153:intron | 10.0% |
| !!! | GTAGTTTTAATTTTTTTTTT+TGG | + | chr4.4:9731516-9731535 | MS.gene28153:intron | 10.0% |
| !! | AATGTTTATTATTACTACTA+GGG | + | chr4.4:9728472-9728491 | MS.gene28153:intron | 15.0% |
| !! | ATAAAATTCTATAGAGAATA+TGG | + | chr4.4:9730645-9730664 | MS.gene28153:intron | 15.0% |
| !! | ATATAATCCATTTATAAAGT+AGG | + | chr4.4:9728512-9728531 | MS.gene28153:intron | 15.0% |
| !! | TAAATGAATAAATAAATACG+AGG | - | chr4.4:9731466-9731485 | None:intergenic | 15.0% |
| !! | TAATGTTTATTATTACTACT+AGG | + | chr4.4:9728471-9728490 | MS.gene28153:intron | 15.0% |
| !!! | TAGAAGTTGATTTTTTTTAT+CGG | + | chr4.4:9731147-9731166 | MS.gene28153:intron | 15.0% |
| !!! | TCTAATCTAGTTTTTTTTAA+GGG | - | chr4.4:9731131-9731150 | None:intergenic | 15.0% |
| !!! | TTCTAATCTAGTTTTTTTTA+AGG | - | chr4.4:9731132-9731151 | None:intergenic | 15.0% |
| !!! | TTTTATAAAACTGAAACAAT+AGG | - | chr4.4:9729670-9729689 | None:intergenic | 15.0% |
| !!! | TTTTTATAAATTAACTTTGG+GGG | + | chr4.4:9728434-9728453 | MS.gene28153:intron | 15.0% |
| !! | AACTTAAGATGTTATACTAT+CGG | + | chr4.4:9731342-9731361 | MS.gene28153:intron | 20.0% |
| !! | ACTGTTATAATATTTGATTG+AGG | + | chr4.4:9727922-9727941 | MS.gene28153:intron | 20.0% |
| !! | AGCAAATTAAGAAATAGAAA+CGG | - | chr4.4:9728714-9728733 | None:intergenic | 20.0% |
| !! | TAAAACTACTATAAGAAGAA+TGG | - | chr4.4:9731505-9731524 | None:intergenic | 20.0% |
| !! | TTCAATCAATCAAATATTAC+AGG | + | chr4.4:9728153-9728172 | MS.gene28153:intron | 20.0% |
| !! | TTGTTACCAATAACAATATA+TGG | - | chr4.4:9729878-9729897 | None:intergenic | 20.0% |
| !!! | CAACAACAATAAATTTTGTA+AGG | - | chr4.4:9731889-9731908 | None:intergenic | 20.0% |
| !!! | CTATTTCATCTGATATTTTA+TGG | - | chr4.4:9730445-9730464 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCACTAATGTT+TGG | - | chr4.4:9729193-9729212 | None:intergenic | 20.0% |
| ! | AACAATACATGTATCTTAAG+GGG | + | chr4.4:9730866-9730885 | MS.gene28153:intron | 25.0% |
| ! | AAGTAGGTTAACTTTGTATA+TGG | + | chr4.4:9728177-9728196 | MS.gene28153:intron | 25.0% |
| ! | AATAGAGAGAATCATAAAGT+AGG | - | chr4.4:9729252-9729271 | None:intergenic | 25.0% |
| ! | AATTCATTATCCATAATGAG+TGG | - | chr4.4:9731264-9731283 | None:intergenic | 25.0% |
| ! | ACTTAAGCCTACTTTATAAA+TGG | - | chr4.4:9728522-9728541 | None:intergenic | 25.0% |
| ! | AGAACAATACATGTATCTTA+AGG | + | chr4.4:9730864-9730883 | MS.gene28153:intron | 25.0% |
| ! | AGTAGGTTAACTTTGTATAT+GGG | + | chr4.4:9728178-9728197 | MS.gene28153:intron | 25.0% |
| ! | ATAGAGAGAATCATAAAGTA+GGG | - | chr4.4:9729251-9729270 | None:intergenic | 25.0% |
| ! | ATCAAATATTACAGGAAAGT+AGG | + | chr4.4:9728161-9728180 | MS.gene28153:intron | 25.0% |
| ! | ATGTTTAGATTTGAAGAAAG+TGG | + | chr4.4:9729697-9729716 | MS.gene28153:intron | 25.0% |
| ! | ATTTGAAAAACTCTCAGATA+TGG | + | chr4.4:9728571-9728590 | MS.gene28153:intron | 25.0% |
| ! | CTAAAATTAGCCGTAATATA+TGG | + | chr4.4:9727965-9727984 | MS.gene28153:intron | 25.0% |
| ! | GAACAATACATGTATCTTAA+GGG | + | chr4.4:9730865-9730884 | MS.gene28153:intron | 25.0% |
| ! | TACTAATAAGGGGAAATATT+TGG | + | chr4.4:9730837-9730856 | MS.gene28153:intron | 25.0% |
| ! | TCAAGTATTAACAAGTATAG+TGG | + | chr4.4:9730171-9730190 | MS.gene28153:intron | 25.0% |
| ! | TTAGAAATTAGCATCAACAT+CGG | - | chr4.4:9730145-9730164 | None:intergenic | 25.0% |
| ! | TTCTATAGAGAATATGGAAT+AGG | + | chr4.4:9730651-9730670 | MS.gene28153:intron | 25.0% |
| ! | TTGACAAATGTCAATTTCTT+TGG | + | chr4.4:9728081-9728100 | MS.gene28153:intron | 25.0% |
| ! | TTGGAATTTAGAAATCCATT+GGG | + | chr4.4:9727837-9727856 | MS.gene28153:intron | 25.0% |
| ! | TTTCATGTCAAAAAAGCTTT+GGG | + | chr4.4:9729140-9729159 | MS.gene28153:intron | 25.0% |
| !! | AAATTGGTAGTACTAATAAG+GGG | + | chr4.4:9730827-9730846 | MS.gene28153:intron | 25.0% |
| !! | ACAAATTGGTAGTACTAATA+AGG | + | chr4.4:9730825-9730844 | MS.gene28153:intron | 25.0% |
| !! | ATGATCAGTCTTATAATACA+GGG | + | chr4.4:9731818-9731837 | MS.gene28153:CDS | 25.0% |
| !! | ATTAAGATGTCTCTGAAAAA+TGG | - | chr4.4:9729276-9729295 | None:intergenic | 25.0% |
| !! | CAAATTGGTAGTACTAATAA+GGG | + | chr4.4:9730826-9730845 | MS.gene28153:intron | 25.0% |
| !! | CTCTTTTATTCACAGATTAA+TGG | + | chr4.4:9729630-9729649 | MS.gene28153:CDS | 25.0% |
| !! | GTTTAAGTTAGAATTAACTC+TGG | + | chr4.4:9727420-9727439 | MS.gene28153:intron | 25.0% |
| !! | TTTGGAATTTAGAAATCCAT+TGG | + | chr4.4:9727836-9727855 | MS.gene28153:intron | 25.0% |
| !! | TTTTCATGTCAAAAAAGCTT+TGG | + | chr4.4:9729139-9729158 | MS.gene28153:intron | 25.0% |
| !! | TTTTGAATTGGTTAAAGTTC+AGG | + | chr4.4:9728303-9728322 | MS.gene28153:intron | 25.0% |
| !!! | ACTTTACTGTGATTTTTTAG+CGG | + | chr4.4:9727751-9727770 | MS.gene28153:intron | 25.0% |
| !!! | ATGGAATAGCTTTGTTTTAA+TGG | - | chr4.4:9730358-9730377 | None:intergenic | 25.0% |
| !!! | ATTTTTTTATGACGTGAATC+AGG | - | chr4.4:9728821-9728840 | None:intergenic | 25.0% |
| !!! | GAAATAGAGCTATTTTAGAA+GGG | + | chr4.4:9730458-9730477 | MS.gene28153:intron | 25.0% |
| !!! | GATTTTGATAGAATTGATTC+CGG | + | chr4.4:9727351-9727370 | MS.gene28153:intron | 25.0% |
| !!! | TGAAATAGAGCTATTTTAGA+AGG | + | chr4.4:9730457-9730476 | MS.gene28153:intron | 25.0% |
| !!! | TGGAATAGCTTTGTTTTAAT+GGG | - | chr4.4:9730357-9730376 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGGATGACTAC+AGG | + | chr4.4:9731527-9731546 | MS.gene28153:intron | 25.0% |
| AAAAGAAGCAAGGTATGATA+AGG | + | chr4.4:9731554-9731573 | MS.gene28153:CDS | 30.0% | |
| AAACATTGAAGAAACACAGA+TGG | - | chr4.4:9731034-9731053 | None:intergenic | 30.0% | |
| AACCAGACAAAGAAAATCTA+GGG | - | chr4.4:9732039-9732058 | None:intergenic | 30.0% | |
| ACAAATAGTTAAATGCCAAG+TGG | - | chr4.4:9730420-9730439 | None:intergenic | 30.0% | |
| AGAGTCAGATTAGTAAAAAC+AGG | - | chr4.4:9730388-9730407 | None:intergenic | 30.0% | |
| AGATTTCTTTGTTGAACTGT+GGG | + | chr4.4:9729569-9729588 | MS.gene28153:CDS | 30.0% | |
| AGGTAAGCATTTCACATTAT+AGG | + | chr4.4:9729418-9729437 | MS.gene28153:intron | 30.0% | |
| AGTAAAGCAGATCATTTCTA+TGG | - | chr4.4:9730513-9730532 | None:intergenic | 30.0% | |
| AGTACAATCAATTAAGCCTA+AGG | - | chr4.4:9728986-9729005 | None:intergenic | 30.0% | |
| AGTGACACAAAATTTAGTTG+AGG | - | chr4.4:9730059-9730078 | None:intergenic | 30.0% | |
| ATAAATGTACTCTACACACT+CGG | - | chr4.4:9727998-9728017 | None:intergenic | 30.0% | |
| ATAAGCACAACTGATACTTT+AGG | - | chr4.4:9731400-9731419 | None:intergenic | 30.0% | |
| ATCAACATCGGAATTATTCA+TGG | - | chr4.4:9730133-9730152 | None:intergenic | 30.0% | |
| ATTGTTTGAACTTCATTTGC+AGG | + | chr4.4:9729722-9729741 | MS.gene28153:intron | 30.0% | |
| CAAATGTGTCTATACTCAAA+GGG | - | chr4.4:9730784-9730803 | None:intergenic | 30.0% | |
| CCAATAACAATATATGGAAC+AGG | - | chr4.4:9729872-9729891 | None:intergenic | 30.0% | |
| CCTGTTCCATATATTGTTAT+TGG | + | chr4.4:9729869-9729888 | MS.gene28153:CDS | 30.0% | |
| CTACTTCTAATCTAGATAGT+TGG | - | chr4.4:9731104-9731123 | None:intergenic | 30.0% | |
| GATGTTGATGCTAATTTCTA+AGG | + | chr4.4:9730144-9730163 | MS.gene28153:intron | 30.0% | |
| GGTAAGCATTTCACATTATA+GGG | + | chr4.4:9729419-9729438 | MS.gene28153:intron | 30.0% | |
| GTAAAGCAGATCATTTCTAT+GGG | - | chr4.4:9730512-9730531 | None:intergenic | 30.0% | |
| TAAACGATGAATAGTGTGTT+TGG | + | chr4.4:9729054-9729073 | MS.gene28153:intron | 30.0% | |
| TAAGTTAGAATTAACTCTGG+AGG | + | chr4.4:9727423-9727442 | MS.gene28153:intron | 30.0% | |
| TAGAGAGAATCATAAAGTAG+GGG | - | chr4.4:9729250-9729269 | None:intergenic | 30.0% | |
| TAGATGAAATATCTTCTCAG+CGG | + | chr4.4:9731773-9731792 | MS.gene28153:CDS | 30.0% | |
| TATGATGAATTTAACTCAGC+TGG | + | chr4.4:9727655-9727674 | MS.gene28153:intron | 30.0% | |
| TCAAATGTGTCTATACTCAA+AGG | - | chr4.4:9730785-9730804 | None:intergenic | 30.0% | |
| TCTGTGAATAAAAGAGAGAT+CGG | - | chr4.4:9729626-9729645 | None:intergenic | 30.0% | |
| TCTTCTCCTAATCAACTAAA+AGG | - | chr4.4:9731686-9731705 | None:intergenic | 30.0% | |
| TGGGATGTAAAAAAAGAATC+CGG | + | chr4.4:9729159-9729178 | MS.gene28153:intron | 30.0% | |
| TTAGTACTACCAATTTGTCT+TGG | - | chr4.4:9730823-9730842 | None:intergenic | 30.0% | |
| TTAGTTCACCTTATCGTTAA+AGG | + | chr4.4:9729345-9729364 | MS.gene28153:CDS | 30.0% | |
| TTCTTTATAGCCACTCATTA+TGG | + | chr4.4:9731251-9731270 | MS.gene28153:intron | 30.0% | |
| ! | ATCATCTAAAGCATAGAAAG+TGG | - | chr4.4:9730099-9730118 | None:intergenic | 30.0% |
| ! | CTTAAGGGGTCTTATAAATA+GGG | + | chr4.4:9730880-9730899 | MS.gene28153:intron | 30.0% |
| ! | GATGATCAGTCTTATAATAC+AGG | + | chr4.4:9731817-9731836 | MS.gene28153:CDS | 30.0% |
| ! | TCTTAAGGGGTCTTATAAAT+AGG | + | chr4.4:9730879-9730898 | MS.gene28153:intron | 30.0% |
| ! | TGATATTTTCTCATTCTTGC+AGG | + | chr4.4:9729306-9729325 | MS.gene28153:intron | 30.0% |
| !! | ATCGCAGGACTTTTAAAAAT+TGG | - | chr4.4:9731005-9731024 | None:intergenic | 30.0% |
| !! | GCTTCTAAGGTACATAAATA+AGG | - | chr4.4:9727701-9727720 | None:intergenic | 30.0% |
| !! | TTCTTCAACTTACTTTTAGC+CGG | - | chr4.4:9727373-9727392 | None:intergenic | 30.0% |
| !! | TTTGTTCTGTACTTTAAAGC+TGG | + | chr4.4:9730215-9730234 | MS.gene28153:intron | 30.0% |
| !!! | CTTTACTGTGATTTTTTAGC+GGG | + | chr4.4:9727752-9727771 | MS.gene28153:intron | 30.0% |
| !!! | TTTACTGTGATTTTTTAGCG+GGG | + | chr4.4:9727753-9727772 | MS.gene28153:intron | 30.0% |
| !!! | TTTTTGAAGTGTGCAAGTTA+TGG | + | chr4.4:9727598-9727617 | MS.gene28153:intron | 30.0% |
| AACATCGGAATTATTCATGG+AGG | - | chr4.4:9730130-9730149 | None:intergenic | 35.0% | |
| AACGATAAGGTGAACTAAAG+AGG | - | chr4.4:9729343-9729362 | None:intergenic | 35.0% | |
| AAGCTACTATTTGTAGCTTG+TGG | - | chr4.4:9729114-9729133 | None:intergenic | 35.0% | |
| AATTTCCATAAGTAGTGTGC+TGG | - | chr4.4:9729509-9729528 | None:intergenic | 35.0% | |
| ACACTGTTTATTCGATCACA+TGG | - | chr4.4:9730981-9731000 | None:intergenic | 35.0% | |
| ACCATTTCAGATACAGTGAT+AGG | - | chr4.4:9730290-9730309 | None:intergenic | 35.0% | |
| AGAACTTAGAAGTAGGAAGA+TGG | + | chr4.4:9728030-9728049 | MS.gene28153:intron | 35.0% | |
| AGAGAGAATCATAAAGTAGG+GGG | - | chr4.4:9729249-9729268 | None:intergenic | 35.0% | |
| AGCTGATATTGTTGCAAAAG+AGG | + | chr4.4:9729898-9729917 | MS.gene28153:CDS | 35.0% | |
| AGGGAGAATAAGGAACATAA+CGG | + | chr4.4:9727205-9727224 | MS.gene28153:CDS | 35.0% | |
| AGTATTTCGTCAAATCAAGC+AGG | - | chr4.4:9728681-9728700 | None:intergenic | 35.0% | |
| ATTCCTCTATGACAAATCTG+TGG | - | chr4.4:9728547-9728566 | None:intergenic | 35.0% | |
| CACACTACTTATGGAAATTC+TGG | + | chr4.4:9729510-9729529 | MS.gene28153:CDS | 35.0% | |
| CATCCATCAACTAAACTCTA+AGG | - | chr4.4:9730314-9730333 | None:intergenic | 35.0% | |
| CCATTTCAGATACAGTGATA+GGG | - | chr4.4:9730289-9730308 | None:intergenic | 35.0% | |
| CTACTATAAGAAGAATGGAC+TGG | - | chr4.4:9731500-9731519 | None:intergenic | 35.0% | |
| CTGTAATGCAAACGACTATA+TGG | + | chr4.4:9728234-9728253 | MS.gene28153:intron | 35.0% | |
| GAACCAGACAAAGAAAATCT+AGG | - | chr4.4:9732040-9732059 | None:intergenic | 35.0% | |
| GAGATTTCTTTGTTGAACTG+TGG | + | chr4.4:9729568-9729587 | MS.gene28153:CDS | 35.0% | |
| GCTGATATTGTTGCAAAAGA+GGG | + | chr4.4:9729899-9729918 | MS.gene28153:CDS | 35.0% | |
| GTACCTTAGAGTTTAGTTGA+TGG | + | chr4.4:9730308-9730327 | MS.gene28153:intron | 35.0% | |
| GTCAGATTAGTAAAAACAGG+AGG | - | chr4.4:9730385-9730404 | None:intergenic | 35.0% | |
| TAAAGCACAAAGCTCTTCTA+AGG | - | chr4.4:9727731-9727750 | None:intergenic | 35.0% | |
| TACTGTACAACCAATTGTCT+GGG | - | chr4.4:9729391-9729410 | None:intergenic | 35.0% | |
| TATGACGTGAATCAGGAAAA+GGG | - | chr4.4:9728814-9728833 | None:intergenic | 35.0% | |
| TCAAGACTTGAGTGAATCAT+AGG | + | chr4.4:9727398-9727417 | MS.gene28153:intron | 35.0% | |
| TCCTAATCAACTAAAAGGAG+AGG | - | chr4.4:9731681-9731700 | None:intergenic | 35.0% | |
| TTATGACGTGAATCAGGAAA+AGG | - | chr4.4:9728815-9728834 | None:intergenic | 35.0% | |
| TTCCTCTATGACAAATCTGT+GGG | - | chr4.4:9728546-9728565 | None:intergenic | 35.0% | |
| ! | CTTTTCAGTCCAAGACAAAT+TGG | + | chr4.4:9730811-9730830 | MS.gene28153:intron | 35.0% |
| ! | GAATAGTGTGTTTGGAATTG+CGG | + | chr4.4:9729062-9729081 | MS.gene28153:intron | 35.0% |
| ! | GGAAGCATGTTATACTTGTA+CGG | - | chr4.4:9731932-9731951 | None:intergenic | 35.0% |
| ! | TACCCTAGATTTTCTTTGTC+TGG | + | chr4.4:9732034-9732053 | MS.gene28153:CDS | 35.0% |
| ! | TACTATTTGTAGCTTGTGGT+TGG | - | chr4.4:9729110-9729129 | None:intergenic | 35.0% |
| ! | TGTGATTAAGTTTTTCCGCA+TGG | + | chr4.4:9731581-9731600 | MS.gene28153:CDS | 35.0% |
| !! | AAGTCAAGTTGATTGAGTGA+AGG | + | chr4.4:9727805-9727824 | MS.gene28153:intron | 35.0% |
| !! | ACCTCTCCTTTTAGTTGATT+AGG | + | chr4.4:9731677-9731696 | MS.gene28153:intron | 35.0% |
| !! | AGTTTAGTTGATGGATGAAG+AGG | + | chr4.4:9730317-9730336 | MS.gene28153:intron | 35.0% |
| !! | CTGCTTTAGAACTTAGAAGT+AGG | + | chr4.4:9728023-9728042 | MS.gene28153:intron | 35.0% |
| ACTTAGAAGTAGGAAGATGG+TGG | + | chr4.4:9728033-9728052 | MS.gene28153:intron | 40.0% | |
| AGAAGCAAGGTATGATAAGG+AGG | + | chr4.4:9731557-9731576 | MS.gene28153:CDS | 40.0% | |
| AGTAAAAACAGGAGGCAACA+TGG | - | chr4.4:9730377-9730396 | None:intergenic | 40.0% | |
| ATGAAATACCTGCACCTACA+TGG | + | chr4.4:9731716-9731735 | MS.gene28153:CDS | 40.0% | |
| ATGGAATAGGTTACTCTGTC+AGG | + | chr4.4:9730664-9730683 | MS.gene28153:intron | 40.0% | |
| ATTCGCTGAGAAGATCTTTG+AGG | - | chr4.4:9731754-9731773 | None:intergenic | 40.0% | |
| CAAAGACATTACTGACCATG+CGG | - | chr4.4:9731599-9731618 | None:intergenic | 40.0% | |
| CATTTCCAGCACACTACTTA+TGG | + | chr4.4:9729501-9729520 | MS.gene28153:intron | 40.0% | |
| CCCTATCACTGTATCTGAAA+TGG | + | chr4.4:9730286-9730305 | MS.gene28153:intron | 40.0% | |
| CCTAAGGATAGACAACTTGA+GGG | - | chr4.4:9728970-9728989 | None:intergenic | 40.0% | |
| CGGCATGACACCATATATTA+CGG | - | chr4.4:9727978-9727997 | None:intergenic | 40.0% | |
| CTAATGTTTGGATTCACGTC+CGG | - | chr4.4:9729181-9729200 | None:intergenic | 40.0% | |
| CTACTGTACAACCAATTGTC+TGG | - | chr4.4:9729392-9729411 | None:intergenic | 40.0% | |
| CTATCCTCAACAACCAGTTT+CGG | + | chr4.4:9731994-9732013 | MS.gene28153:CDS | 40.0% | |
| GACTCTCTACTATATCCACT+TGG | + | chr4.4:9730402-9730421 | MS.gene28153:intron | 40.0% | |
| GAGAATAAGGAACATAACGG+TGG | + | chr4.4:9727208-9727227 | MS.gene28153:CDS | 40.0% | |
| GAGAGAATCATAAAGTAGGG+GGG | - | chr4.4:9729248-9729267 | None:intergenic | 40.0% | |
| GATGAATTTAACTCAGCTGG+TGG | + | chr4.4:9727658-9727677 | MS.gene28153:intron | 40.0% | |
| GCACTAGTACAAAATCCCAA+TGG | - | chr4.4:9727855-9727874 | None:intergenic | 40.0% | |
| GTAGTGTGCTGGAAATGAAA+CGG | - | chr4.4:9729498-9729517 | None:intergenic | 40.0% | |
| GTATATGGGTGTTTGACTCT+AGG | + | chr4.4:9728192-9728211 | MS.gene28153:intron | 40.0% | |
| TCTGCTTTACTTGACTGATG+AGG | + | chr4.4:9730522-9730541 | MS.gene28153:intron | 40.0% | |
| TGGGAGAACCTTTAACGATA+AGG | - | chr4.4:9729356-9729375 | None:intergenic | 40.0% | |
| TGGTTGTACAGTAGATGTGA+AGG | + | chr4.4:9729398-9729417 | MS.gene28153:CDS | 40.0% | |
| TTCCCACAGATTTGTCATAG+AGG | + | chr4.4:9728541-9728560 | MS.gene28153:intron | 40.0% | |
| TTCTCATTCTTGCAGGTGTT+GGG | + | chr4.4:9729313-9729332 | MS.gene28153:intron | 40.0% | |
| TTTCTCATTCTTGCAGGTGT+TGG | + | chr4.4:9729312-9729331 | MS.gene28153:intron | 40.0% | |
| ! | AAGGGCATAAGTTTGGACTT+GGG | - | chr4.4:9729010-9729029 | None:intergenic | 40.0% |
| ! | AATTTTGTCTCCTGCAGTAG+TGG | + | chr4.4:9727496-9727515 | MS.gene28153:intron | 40.0% |
| ! | AGGGGTCTTATAAATAGGGA+CGG | + | chr4.4:9730884-9730903 | MS.gene28153:intron | 40.0% |
| ! | CCATCTGACTTTCTGTTTTC+CGG | - | chr4.4:9728875-9728894 | None:intergenic | 40.0% |
| !! | AAAGCTCTTCTAAGGTAAGC+TGG | - | chr4.4:9727723-9727742 | None:intergenic | 40.0% |
| !! | ACATATGAGAGAAGTGCCTA+AGG | - | chr4.4:9730705-9730724 | None:intergenic | 40.0% |
| !! | AGATCTTTGAGGTGAAGGAA+TGG | - | chr4.4:9731743-9731762 | None:intergenic | 40.0% |
| !! | CATATGAGAGAAGTGCCTAA+GGG | - | chr4.4:9730704-9730723 | None:intergenic | 40.0% |
| !! | GAAGACTAGTTTGCAGAAGT+GGG | + | chr4.4:9729781-9729800 | MS.gene28153:CDS | 40.0% |
| !! | TCAAGTTGATTGAGTGAAGG+AGG | + | chr4.4:9727808-9727827 | MS.gene28153:intron | 40.0% |
| !! | TGAGAAGATCTTTGAGGTGA+AGG | - | chr4.4:9731748-9731767 | None:intergenic | 40.0% |
| !! | TTCTGTACTTTAAAGCTGGC+TGG | + | chr4.4:9730219-9730238 | MS.gene28153:intron | 40.0% |
| AACCAAACACACTCGTTGAG+AGG | - | chr4.4:9727314-9727333 | None:intergenic | 45.0% | |
| ACCAAACACACTCGTTGAGA+GGG | - | chr4.4:9727313-9727332 | None:intergenic | 45.0% | |
| AGAATCATAAAGTAGGGGGG+AGG | - | chr4.4:9729245-9729264 | None:intergenic | 45.0% | |
| AGCTCTTCAAGTAGCCTCAA+AGG | + | chr4.4:9729534-9729553 | MS.gene28153:CDS | 45.0% | |
| AGTTGACTGATGCACATCGA+AGG | - | chr4.4:9729029-9729048 | None:intergenic | 45.0% | |
| ATGCTTAGTTCCACTACTGC+AGG | - | chr4.4:9727509-9727528 | None:intergenic | 45.0% | |
| CACACACAGCTATAAAAGCG+AGG | - | chr4.4:9728393-9728412 | None:intergenic | 45.0% | |
| CACAGATGGTTGAAAATCGC+AGG | - | chr4.4:9731020-9731039 | None:intergenic | 45.0% | |
| CCGGAAAACAGAAAGTCAGA+TGG | + | chr4.4:9728872-9728891 | MS.gene28153:intron | 45.0% | |
| CGTACTTTCGAGATCTATGC+TGG | + | chr4.4:9728105-9728124 | MS.gene28153:intron | 45.0% | |
| CTCTCTCAGAATCACCTTTG+AGG | - | chr4.4:9729551-9729570 | None:intergenic | 45.0% | |
| GAATCATAAAGTAGGGGGGA+GGG | - | chr4.4:9729244-9729263 | None:intergenic | 45.0% | |
| GATGTGCATCAGTCAACTGT+AGG | + | chr4.4:9729031-9729050 | MS.gene28153:intron | 45.0% | |
| GCCTAAGGATAGACAACTTG+AGG | - | chr4.4:9728971-9728990 | None:intergenic | 45.0% | |
| GGTTGTTGAGGATAGAGTGT+GGG | - | chr4.4:9731989-9732008 | None:intergenic | 45.0% | |
| GTACAACCAATTGTCTGGGA+AGG | - | chr4.4:9729387-9729406 | None:intergenic | 45.0% | |
| GTCCTATGTAGAAGACCCTT+AGG | + | chr4.4:9730686-9730705 | MS.gene28153:intron | 45.0% | |
| GTTGAACTGTGGGATGTATC+AGG | + | chr4.4:9729579-9729598 | MS.gene28153:CDS | 45.0% | |
| GTTGACTGATGCACATCGAA+GGG | - | chr4.4:9729028-9729047 | None:intergenic | 45.0% | |
| GTTGATTGAGTGAAGGAGGT+TGG | + | chr4.4:9727812-9727831 | MS.gene28153:intron | 45.0% | |
| TACAGGCAGCAAAAGAAGCA+AGG | + | chr4.4:9731544-9731563 | MS.gene28153:intron | 45.0% | |
| TAGACAACTTGAGGGCAGTT+TGG | - | chr4.4:9728962-9728981 | None:intergenic | 45.0% | |
| TAGCTTTCAGAGACCGAAAC+TGG | - | chr4.4:9732010-9732029 | None:intergenic | 45.0% | |
| TGAGTGAAGGAGGTTGGATT+TGG | + | chr4.4:9727818-9727837 | MS.gene28153:intron | 45.0% | |
| TGCCACTGAAACTCGTAGAT+CGG | + | chr4.4:9727872-9727891 | MS.gene28153:intron | 45.0% | |
| TGCCTAAGGGTCTTCTACAT+AGG | - | chr4.4:9730691-9730710 | None:intergenic | 45.0% | |
| TGGTTGTTGAGGATAGAGTG+TGG | - | chr4.4:9731990-9732009 | None:intergenic | 45.0% | |
| TGTTGATGTTGCACGCCAAT+GGG | + | chr4.4:9729946-9729965 | MS.gene28153:CDS | 45.0% | |
| TTGTTGATGTTGCACGCCAA+TGG | + | chr4.4:9729945-9729964 | MS.gene28153:CDS | 45.0% | |
| ! | CACATCGAAGGGCATAAGTT+TGG | - | chr4.4:9729017-9729036 | None:intergenic | 45.0% |
| ! | CCCTCAAGTTGTCTATCCTT+AGG | + | chr4.4:9728967-9728986 | MS.gene28153:intron | 45.0% |
| ! | CTAAGGTAAGCTGGCTTCTA+AGG | - | chr4.4:9727714-9727733 | None:intergenic | 45.0% |
| ! | GAAGGGCATAAGTTTGGACT+TGG | - | chr4.4:9729011-9729030 | None:intergenic | 45.0% |
| ! | GGGACATTTTCAGCTCCTTT+GGG | + | chr4.4:9729824-9729843 | MS.gene28153:CDS | 45.0% |
| ! | TGGGACATTTTCAGCTCCTT+TGG | + | chr4.4:9729823-9729842 | MS.gene28153:CDS | 45.0% |
| ! | TTGAGGCGCTTACTGCAATA+AGG | - | chr4.4:9730042-9730061 | None:intergenic | 45.0% |
| !! | CGAAGACTAGTTTGCAGAAG+TGG | + | chr4.4:9729780-9729799 | MS.gene28153:CDS | 45.0% |
| !! | TTGACTTTTTCCACACGACG+CGG | - | chr4.4:9727792-9727811 | None:intergenic | 45.0% |
| !!! | CTGTGATTTTTTAGCGGGGA+TGG | + | chr4.4:9727757-9727776 | MS.gene28153:intron | 45.0% |
| !!! | TTTTCAGCTCCTTTGGGATC+TGG | + | chr4.4:9729830-9729849 | MS.gene28153:CDS | 45.0% |
| !! | AATTATAAATATATCAAATT+CGG | - | chr4.4:9727544-9727563 | None:intergenic | 5.0% |
| !! | ATTAATTATATAATAAATAC+CGG | + | chr4.4:9728853-9728872 | MS.gene28153:intron | 5.0% |
| !! | TAAATTTAAACAAAAAATAA+AGG | - | chr4.4:9731632-9731651 | None:intergenic | 5.0% |
| !!! | TATTTTTATAAATTAACTTT+GGG | + | chr4.4:9728432-9728451 | MS.gene28153:intron | 5.0% |
| !!! | TATTTTTTGTTTAAATTTAT+GGG | + | chr4.4:9731633-9731652 | MS.gene28153:intron | 5.0% |
| !!! | TTATTTTTTGTTTAAATTTA+TGG | + | chr4.4:9731632-9731651 | MS.gene28153:intron | 5.0% |
| !!! | TTTGATATATTTATAATTTT+TGG | + | chr4.4:9727546-9727565 | MS.gene28153:intron | 5.0% |
| ATGGAACAGGAAGACCACCA+GGG | - | chr4.4:9729859-9729878 | None:intergenic | 50.0% | |
| CAGCTGAGATTGCTGCAACT+GGG | + | chr4.4:9729804-9729823 | MS.gene28153:CDS | 50.0% | |
| CTGAAACTCGTAGATCGGGA+CGG | + | chr4.4:9727877-9727896 | MS.gene28153:intron | 50.0% | |
| GAGACCGAAACTGGTTGTTG+AGG | - | chr4.4:9732001-9732020 | None:intergenic | 50.0% | |
| GCCACTGAAACTCGTAGATC+GGG | + | chr4.4:9727873-9727892 | MS.gene28153:intron | 50.0% | |
| GGAACGTGAGAGGGAGAATA+AGG | + | chr4.4:9727195-9727214 | MS.gene28153:CDS | 50.0% | |
| GGAGTTAGATTGCGTTGAGC+CGG | - | chr4.4:9731962-9731981 | None:intergenic | 50.0% | |
| GGTGAAGGAATGGACCATGT+AGG | - | chr4.4:9731733-9731752 | None:intergenic | 50.0% | |
| GTGTGCTGGAAATGAAACGG+AGG | - | chr4.4:9729495-9729514 | None:intergenic | 50.0% | |
| TAACATGCTTCCCCCACTTC+CGG | + | chr4.4:9731940-9731959 | MS.gene28153:CDS | 50.0% | |
| TATGGAACAGGAAGACCACC+AGG | - | chr4.4:9729860-9729879 | None:intergenic | 50.0% | |
| TCCACCACCAGGAAAACTCT+CGG | - | chr4.4:9730017-9730036 | None:intergenic | 50.0% | |
| TCCCGATCTACGAGTTTCAG+TGG | - | chr4.4:9727877-9727896 | None:intergenic | 50.0% | |
| TCCCTCTCAACGAGTGTGTT+TGG | + | chr4.4:9727309-9727328 | MS.gene28153:intron | 50.0% | |
| TGTTGAGGATAGAGTGTGGG+TGG | - | chr4.4:9731986-9732005 | None:intergenic | 50.0% | |
| ! | CAAGTCAGAGTGCTCGTTGT+TGG | + | chr4.4:9727244-9727263 | MS.gene28153:CDS | 50.0% |
| ! | CATAACGGTGGAGTGCTTTG+TGG | + | chr4.4:9727220-9727239 | MS.gene28153:CDS | 50.0% |
| !! | TGACTTTTTCCACACGACGC+GGG | - | chr4.4:9727791-9727810 | None:intergenic | 50.0% |
| AACCCTGCTTCTCGACCCAT+TGG | - | chr4.4:9729964-9729983 | None:intergenic | 55.0% | |
| AGATTGCGTTGAGCCGGAAG+TGG | - | chr4.4:9731956-9731975 | None:intergenic | 55.0% | |
| AGGGCAAGCAGTCACATGCT+CGG | - | chr4.4:9729225-9729244 | None:intergenic | 55.0% | |
| ATTGCGTTGAGCCGGAAGTG+GGG | - | chr4.4:9731954-9731973 | None:intergenic | 55.0% | |
| CCAGGAAAACTCTCGGTCAG+TGG | - | chr4.4:9730010-9730029 | None:intergenic | 55.0% | |
| GAAAATTTCCCCGCGTCGTG+TGG | + | chr4.4:9727779-9727798 | MS.gene28153:intron | 55.0% | |
| GATTGCGTTGAGCCGGAAGT+GGG | - | chr4.4:9731955-9731974 | None:intergenic | 55.0% | |
| GCAGCTGAGATTGCTGCAAC+TGG | + | chr4.4:9729803-9729822 | MS.gene28153:CDS | 55.0% | |
| GCTCGTCCTTCCCAGACAAT+TGG | + | chr4.4:9729378-9729397 | MS.gene28153:CDS | 55.0% | |
| GGAATGGACCATGTAGGTGC+AGG | - | chr4.4:9731727-9731746 | None:intergenic | 55.0% | |
| GTCTGGGAAGGACGAGCAAT+GGG | - | chr4.4:9729375-9729394 | None:intergenic | 55.0% | |
| TGAGGATAGAGTGTGGGTGG+TGG | - | chr4.4:9731983-9732002 | None:intergenic | 55.0% | |
| TGTCTGGGAAGGACGAGCAA+TGG | - | chr4.4:9729376-9729395 | None:intergenic | 55.0% | |
| ! | ACCGAGAGTTTTCCTGGTGG+TGG | + | chr4.4:9730013-9730032 | MS.gene28153:CDS | 55.0% |
| ! | CCACTGACCGAGAGTTTTCC+TGG | + | chr4.4:9730007-9730026 | MS.gene28153:CDS | 55.0% |
| ! | CTGACCGAGAGTTTTCCTGG+TGG | + | chr4.4:9730010-9730029 | MS.gene28153:CDS | 55.0% |
| ! | GTTGCAAAAGAGGGTGCGAG+AGG | + | chr4.4:9729908-9729927 | MS.gene28153:CDS | 55.0% |
| !! | GACTTTTTCCACACGACGCG+GGG | - | chr4.4:9727790-9727809 | None:intergenic | 55.0% |
| !! | GTGCTCGTTGTTGGTGACTC+AGG | + | chr4.4:9727253-9727272 | MS.gene28153:CDS | 55.0% |
| !! | GTTCTGGAGGGAACGTGAGA+GGG | + | chr4.4:9727186-9727205 | MS.gene28153:CDS | 55.0% |
| !! | TCAGCTCCTTTGGGATCTGG+CGG | + | chr4.4:9729833-9729852 | MS.gene28153:CDS | 55.0% |
| !! | TGTTCTGGAGGGAACGTGAG+AGG | + | chr4.4:9727185-9727204 | MS.gene28153:CDS | 55.0% |
| !!! | GAGAGTTTTCCTGGTGGTGG+AGG | + | chr4.4:9730016-9730035 | MS.gene28153:CDS | 55.0% |
| ACGCCAATGGGTCGAGAAGC+AGG | + | chr4.4:9729958-9729977 | MS.gene28153:CDS | 60.0% | |
| AGTGGAAGCTCCTCGCTGGA+TGG | - | chr4.4:9729992-9730011 | None:intergenic | 60.0% | |
| CGCCAATGGGTCGAGAAGCA+GGG | + | chr4.4:9729959-9729978 | MS.gene28153:CDS | 60.0% | |
| GCAATAAGGCCTCCACCACC+AGG | - | chr4.4:9730028-9730047 | None:intergenic | 60.0% | |
| GGAGCTGAGCGAAGCTAGTG+TGG | + | chr4.4:9728324-9728343 | MS.gene28153:intron | 60.0% | |
| TTGCGTTGAGCCGGAAGTGG+GGG | - | chr4.4:9731953-9731972 | None:intergenic | 60.0% | |
| ! | GGGTTTGCTTCCATCCAGCG+AGG | + | chr4.4:9729979-9729998 | MS.gene28153:CDS | 60.0% |
| AGGGTGCGAGAGGAAGCAGC+GGG | + | chr4.4:9729918-9729937 | MS.gene28153:CDS | 65.0% | |
| GGTCAGTGGAAGCTCCTCGC+TGG | - | chr4.4:9729996-9730015 | None:intergenic | 65.0% | |
| ! | GAGGGTGCGAGAGGAAGCAG+CGG | + | chr4.4:9729917-9729936 | MS.gene28153:CDS | 65.0% |
| CCAGGGCCGCCAGATCCCAA+AGG | - | chr4.4:9729842-9729861 | None:intergenic | 70.0% | |
| TTGGGATCTGGCGGCCCTGG+TGG | + | chr4.4:9729842-9729861 | MS.gene28153:CDS | 70.0% | |
| !! | CCTTTGGGATCTGGCGGCCC+TGG | + | chr4.4:9729839-9729858 | MS.gene28153:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9727184 | 9732111 | 9727184 | ID=MS.gene28153 |
| chr4.4 | mRNA | 9727184 | 9732111 | 9727184 | ID=MS.gene28153.t1;Parent=MS.gene28153 |
| chr4.4 | exon | 9727184 | 9727274 | 9727184 | ID=MS.gene28153.t1.exon1;Parent=MS.gene28153.t1 |
| chr4.4 | CDS | 9727184 | 9727274 | 9727184 | ID=cds.MS.gene28153.t1;Parent=MS.gene28153.t1 |
| chr4.4 | exon | 9729328 | 9729419 | 9729328 | ID=MS.gene28153.t1.exon2;Parent=MS.gene28153.t1 |
| chr4.4 | CDS | 9729328 | 9729419 | 9729328 | ID=cds.MS.gene28153.t1;Parent=MS.gene28153.t1 |
| chr4.4 | exon | 9729510 | 9729651 | 9729510 | ID=MS.gene28153.t1.exon3;Parent=MS.gene28153.t1 |
| chr4.4 | CDS | 9729510 | 9729651 | 9729510 | ID=cds.MS.gene28153.t1;Parent=MS.gene28153.t1 |
| chr4.4 | exon | 9729744 | 9730048 | 9729744 | ID=MS.gene28153.t1.exon4;Parent=MS.gene28153.t1 |
| chr4.4 | CDS | 9729744 | 9730048 | 9729744 | ID=cds.MS.gene28153.t1;Parent=MS.gene28153.t1 |
| chr4.4 | exon | 9731549 | 9731602 | 9731549 | ID=MS.gene28153.t1.exon5;Parent=MS.gene28153.t1 |
| chr4.4 | CDS | 9731549 | 9731602 | 9731549 | ID=cds.MS.gene28153.t1;Parent=MS.gene28153.t1 |
| chr4.4 | exon | 9731691 | 9731839 | 9731691 | ID=MS.gene28153.t1.exon6;Parent=MS.gene28153.t1 |
| chr4.4 | CDS | 9731691 | 9731839 | 9731691 | ID=cds.MS.gene28153.t1;Parent=MS.gene28153.t1 |
| chr4.4 | exon | 9731916 | 9732111 | 9731916 | ID=MS.gene28153.t1.exon7;Parent=MS.gene28153.t1 |
| chr4.4 | CDS | 9731916 | 9732111 | 9731916 | ID=cds.MS.gene28153.t1;Parent=MS.gene28153.t1 |
| Gene Sequence |
| Protein sequence |
