Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28330.t1 | XP_003606823.1 | 96.8 | 405 | 13 | 0 | 1 | 405 | 15 | 419 | 5.40E-233 | 816.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28330.t1 | Q9LND7 | 56.2 | 406 | 169 | 3 | 1 | 405 | 15 | 412 | 1.6e-137 | 490.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28330.t1 | G7JEW2 | 96.8 | 405 | 13 | 0 | 1 | 405 | 15 | 419 | 3.9e-233 | 816.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene28330 | -0.802868 | 4.57E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene28330 | -0.813454 | 2.54E-51 | -1.69E-46 |
| MS.gene051349 | MS.gene28330 | -0.800542 | 1.37E-48 | -1.69E-46 |
| MS.gene051452 | MS.gene28330 | -0.824415 | 8.17E-54 | -1.69E-46 |
| MS.gene051757 | MS.gene28330 | -0.803171 | 3.96E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene28330 | -0.800718 | 1.26E-48 | -1.69E-46 |
| MS.gene052309 | MS.gene28330 | 0.819658 | 1.03E-52 | -1.69E-46 |
| MS.gene052358 | MS.gene28330 | 0.802151 | 6.43E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene28330 | -0.812 | 5.28E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene28330 | -0.805599 | 1.23E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene28330 | -0.817052 | 4.03E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene28330 | -0.817317 | 3.51E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene28330 | -0.808862 | 2.51E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene28330 | -0.802759 | 4.82E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28330.t1 | MTR_4g068130 | 96.790 | 405 | 13 | 0 | 1 | 405 | 15 | 419 | 0.0 | 822 |
| MS.gene28330.t1 | MTR_4g068130 | 96.622 | 296 | 10 | 0 | 1 | 296 | 15 | 310 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28330.t1 | AT1G06110 | 56.158 | 406 | 169 | 3 | 1 | 405 | 15 | 412 | 1.82e-171 | 488 |
| MS.gene28330.t1 | AT1G06110 | 55.163 | 368 | 156 | 3 | 1 | 367 | 15 | 374 | 1.64e-150 | 432 |
| MS.gene28330.t1 | AT1G06110 | 54.000 | 300 | 129 | 3 | 1 | 299 | 15 | 306 | 1.31e-112 | 333 |
Find 113 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGTTCTTGCCAGCTTTAT+TGG | 0.192292 | 4.4:+39151380 | MS.gene28330:CDS |
| CTTAGCTTCTGGAAAGTTAT+TGG | 0.196198 | 4.4:-39150248 | None:intergenic |
| TCTATTGGTAAGAAGATTTC+TGG | 0.199473 | 4.4:-39150635 | None:intergenic |
| GGCACTTCTTTGGGAATTAT+TGG | 0.206564 | 4.4:+39150418 | MS.gene28330:CDS |
| TCTTCAATTACCTGACTTAT+AGG | 0.232214 | 4.4:-39150484 | None:intergenic |
| CGACACATCTGGCACTTCTT+TGG | 0.247380 | 4.4:+39150408 | MS.gene28330:CDS |
| AAGTTCACGGAAGCAGATTT+TGG | 0.254589 | 4.4:-39149326 | None:intergenic |
| GTTATTGACACATGAAATTC+TGG | 0.273112 | 4.4:-39149266 | None:intergenic |
| CAAAGAGTTTCCTTAGCTTC+TGG | 0.283133 | 4.4:-39150259 | None:intergenic |
| TCCTTTACCGCTTTCATAAT+GGG | 0.291364 | 4.4:+39150356 | MS.gene28330:CDS |
| ATCCTTTACCGCTTTCATAA+TGG | 0.293459 | 4.4:+39150355 | MS.gene28330:CDS |
| GAACAAAGAGGGGATTCTTC+TGG | 0.316780 | 4.4:-39150826 | None:intergenic |
| TCACCTCCGATGATTCTCTT+TGG | 0.328831 | 4.4:+39149302 | MS.gene28330:CDS |
| TGAAATTCTGGCAATGTCTT+CGG | 0.331618 | 4.4:-39149254 | None:intergenic |
| GACACATCTGGCACTTCTTT+GGG | 0.340145 | 4.4:+39150409 | MS.gene28330:CDS |
| GAATTTCATGTGTCAATAAC+AGG | 0.340741 | 4.4:+39149269 | MS.gene28330:CDS |
| GAAATTCTGGCAATGTCTTC+GGG | 0.342990 | 4.4:-39149253 | None:intergenic |
| GATGGACAGCGAAAAGATTC+AGG | 0.360172 | 4.4:+39150705 | MS.gene28330:CDS |
| TGATAAAACCACGTTGTAAA+CGG | 0.369396 | 4.4:-39150762 | None:intergenic |
| GCCAGCTTTATTGGAGGCAC+TGG | 0.385235 | 4.4:+39151389 | MS.gene28330:CDS |
| ACATGGCATCAAGTCTCTAT+TGG | 0.400860 | 4.4:-39150650 | None:intergenic |
| TCCAAGGATGGGATGGGGTG+TGG | 0.414288 | 4.4:+39153346 | MS.gene28330:intron |
| CAGCAAATTTCGCACAACTT+AGG | 0.416246 | 4.4:+39150511 | MS.gene28330:CDS |
| CACACATCCTTGAGGTTGTA+AGG | 0.423219 | 4.4:-39151341 | None:intergenic |
| AAAAGAAAAGCATACCTTCC+AGG | 0.424053 | 4.4:-39152451 | None:intergenic |
| GGGGTTTCCGAGATGATCAA+TGG | 0.428590 | 4.4:-39149362 | None:intergenic |
| GTCAATGGAGAAGCTGTTAT+AGG | 0.428770 | 4.4:+39151445 | MS.gene28330:CDS |
| ATTCACGAAATGATCATAGA+AGG | 0.432687 | 4.4:-39150449 | None:intergenic |
| TCACCTCTGCCAACATCATC+AGG | 0.438058 | 4.4:+39152400 | MS.gene28330:CDS |
| ACATCATCAGGTTCCATTGA+AGG | 0.440193 | 4.4:+39152412 | MS.gene28330:CDS |
| GAACAACTTCTCACTGTAAG+TGG | 0.442146 | 4.4:-39150575 | None:intergenic |
| AAAGGTAAAGGAACCTTCAA+TGG | 0.442463 | 4.4:-39152425 | None:intergenic |
| TGCAGGAAGCTTATCAAACT+TGG | 0.443709 | 4.4:+39150146 | MS.gene28330:intron |
| TGGAAAGTTATTGGTGAGCC+AGG | 0.447285 | 4.4:-39150239 | None:intergenic |
| AAACCCCACCCCTTCCTTCA+AGG | 0.450980 | 4.4:+39149378 | MS.gene28330:CDS |
| TTCTTTCTCAACTGTACCAA+TGG | 0.465883 | 4.4:+39150595 | MS.gene28330:CDS |
| TTTATCAAACTGCTCGAAGA+AGG | 0.468462 | 4.4:+39150778 | MS.gene28330:CDS |
| TTATTTATTACCTATAAGTC+AGG | 0.471713 | 4.4:+39150474 | MS.gene28330:CDS |
| AGAAGCTGAGATTCAAGAGT+TGG | 0.474189 | 4.4:+39150294 | MS.gene28330:CDS |
| GCCCATTATGAAAGCGGTAA+AGG | 0.478015 | 4.4:-39150357 | None:intergenic |
| AGCAGCCACAAGAACATACT+TGG | 0.481685 | 4.4:-39150548 | None:intergenic |
| TTGTCACCTGGACGCAAAAG+TGG | 0.486771 | 4.4:-39152355 | None:intergenic |
| GATCACGATACCGACACATC+TGG | 0.487084 | 4.4:+39150397 | MS.gene28330:CDS |
| CCTTTACCTTTGTACCTGGA+AGG | 0.487933 | 4.4:+39152437 | MS.gene28330:CDS |
| AAGCGGTAAAGGATCCTTGT+AGG | 0.488371 | 4.4:-39150346 | None:intergenic |
| ACTTCTTTGGGAATTATTGG+TGG | 0.492745 | 4.4:+39150421 | MS.gene28330:CDS |
| CTCTCCTACCTGCACACCAT+TGG | 0.499292 | 4.4:-39150860 | None:intergenic |
| CCTCAAGGATGTGTGATCAA+TGG | 0.501342 | 4.4:+39151349 | MS.gene28330:CDS |
| GAAATGAAGAGTGACCTTGA+AGG | 0.511250 | 4.4:-39149392 | None:intergenic |
| TAAGCGTGTCAAAAGGTGTT+GGG | 0.513341 | 4.4:+39150204 | MS.gene28330:CDS |
| GTTCTTGCCAGCTTTATTGG+AGG | 0.513504 | 4.4:+39151383 | MS.gene28330:CDS |
| CTCTGCATTGCTTGTCCCTG+AGG | 0.515170 | 4.4:+39151261 | MS.gene28330:CDS |
| AATCTTTCCAAGGATGGGAT+GGG | 0.521300 | 4.4:+39153340 | MS.gene28330:intron |
| TGCTGTAACCAATGGTGTGC+AGG | 0.521555 | 4.4:+39150852 | MS.gene28330:CDS |
| TAATCTTTCCAAGGATGGGA+TGG | 0.523736 | 4.4:+39153339 | MS.gene28330:intron |
| TCTTGAAGATCAACACCCTC+AGG | 0.523758 | 4.4:-39151277 | None:intergenic |
| TGACCTTGAAGGAAGGGGTG+GGG | 0.528849 | 4.4:-39149381 | None:intergenic |
| CCTTCCAGGTACAAAGGTAA+AGG | 0.532280 | 4.4:-39152437 | None:intergenic |
| CAATAACTTTCCAGAAGCTA+AGG | 0.538757 | 4.4:+39150249 | MS.gene28330:CDS |
| TCCAGTGCCTCCAATAAAGC+TGG | 0.538989 | 4.4:-39151390 | None:intergenic |
| TCTGCATTGCTTGTCCCTGA+GGG | 0.539663 | 4.4:+39151262 | MS.gene28330:CDS |
| GGGTTTCCGAGATGATCAAT+GGG | 0.541622 | 4.4:-39149361 | None:intergenic |
| TCAAATTGCCTCTTCCTACA+AGG | 0.542221 | 4.4:+39150332 | MS.gene28330:CDS |
| TAAAGGATCCTTGTAGGAAG+AGG | 0.548947 | 4.4:-39150340 | None:intergenic |
| TTTCTTGCCCATTATGAAAG+CGG | 0.550873 | 4.4:-39150363 | None:intergenic |
| GGTTCCTTTACCTTTGTACC+TGG | 0.551215 | 4.4:+39152433 | MS.gene28330:CDS |
| AGCTGAGATTCAAGAGTTGG+AGG | 0.553076 | 4.4:+39150297 | MS.gene28330:CDS |
| GTGACCTTGAAGGAAGGGGT+GGG | 0.553140 | 4.4:-39149382 | None:intergenic |
| TTAAGCGTGTCAAAAGGTGT+TGG | 0.554883 | 4.4:+39150203 | MS.gene28330:CDS |
| TTTGGACCAAAGAGAATCAT+CGG | 0.554950 | 4.4:-39149308 | None:intergenic |
| TCCAACATATAGTTGACCAT+TGG | 0.556460 | 4.4:-39150611 | None:intergenic |
| GATTAGTTTGCATCATGAGA+TGG | 0.556689 | 4.4:+39150687 | MS.gene28330:CDS |
| ATCTTTCCAAGGATGGGATG+GGG | 0.556914 | 4.4:+39153341 | MS.gene28330:intron |
| ACCAATGGTCAACTATATGT+TGG | 0.558525 | 4.4:+39150610 | MS.gene28330:CDS |
| CTCTTGTTAAGCGTGTCAAA+AGG | 0.560024 | 4.4:+39150197 | MS.gene28330:CDS |
| GTTGAGTGAGAGAAAGTTCA+CGG | 0.563690 | 4.4:-39149339 | None:intergenic |
| GAAGAGTGACCTTGAAGGAA+GGG | 0.569439 | 4.4:-39149387 | None:intergenic |
| TGGAGAAGCTGTTATAGGAA+TGG | 0.573312 | 4.4:+39151450 | MS.gene28330:CDS |
| GATGTAGTATCTGATGTCAA+TGG | 0.575744 | 4.4:+39151430 | MS.gene28330:CDS |
| TTACAGCAGTTGAACAAAGA+GGG | 0.577693 | 4.4:-39150837 | None:intergenic |
| CAAAGAAGTGCCAGATGTGT+CGG | 0.581288 | 4.4:-39150407 | None:intergenic |
| AAGATCCAAGTATGTTCTTG+TGG | 0.582780 | 4.4:+39150543 | MS.gene28330:CDS |
| ATAAAGCTGGCAAGAACTGT+GGG | 0.586845 | 4.4:-39151377 | None:intergenic |
| AAGAGTGACCTTGAAGGAAG+GGG | 0.587315 | 4.4:-39149386 | None:intergenic |
| CGCATGTCCTTACAACCTCA+AGG | 0.588272 | 4.4:+39151334 | MS.gene28330:CDS |
| TAAACAAACTCTTTGTCACC+TGG | 0.589517 | 4.4:-39152367 | None:intergenic |
| AGCATACCTTCCAGGTACAA+AGG | 0.589560 | 4.4:-39152443 | None:intergenic |
| TGAAGAGTGACCTTGAAGGA+AGG | 0.590117 | 4.4:-39149388 | None:intergenic |
| ACTCAACCCATTGATCATCT+CGG | 0.590506 | 4.4:+39149355 | MS.gene28330:CDS |
| CTCAGGGACAAGCAATGCAG+AGG | 0.595109 | 4.4:-39151260 | None:intergenic |
| AATAAAGCTGGCAAGAACTG+TGG | 0.601208 | 4.4:-39151378 | None:intergenic |
| TGTTCAACTGCTGTAACCAA+TGG | 0.603564 | 4.4:+39150844 | MS.gene28330:CDS |
| TTCTTCTAACCACAGTAGCA+TGG | 0.605979 | 4.4:-39150731 | None:intergenic |
| CCATTGATCACACATCCTTG+AGG | 0.606270 | 4.4:-39151349 | None:intergenic |
| CTTGAGGTTGTAAGGACATG+CGG | 0.606466 | 4.4:-39151333 | None:intergenic |
| AGTGACCTTGAAGGAAGGGG+TGG | 0.608618 | 4.4:-39149383 | None:intergenic |
| GTTACAGCAGTTGAACAAAG+AGG | 0.609032 | 4.4:-39150838 | None:intergenic |
| TTCAGGATGCCATGCTACTG+TGG | 0.609877 | 4.4:+39150722 | MS.gene28330:CDS |
| ATCTTCAAGATGACCGTGAG+AGG | 0.616202 | 4.4:+39151290 | MS.gene28330:CDS |
| ATCAGATTCTGAGGAACACA+TGG | 0.619535 | 4.4:-39150667 | None:intergenic |
| TGCAAACTAATCAGATTCTG+AGG | 0.620468 | 4.4:-39150676 | None:intergenic |
| TACAGCAGTTGAACAAAGAG+GGG | 0.621621 | 4.4:-39150836 | None:intergenic |
| GCTAAGGAAACTCTTTGTGA+AGG | 0.621981 | 4.4:+39150265 | MS.gene28330:CDS |
| AAGAAAATAAGTACCTCTCA+CGG | 0.622624 | 4.4:-39151303 | None:intergenic |
| TGTCACCTGGACGCAAAAGT+GGG | 0.631556 | 4.4:-39152354 | None:intergenic |
| GAACCTGATGATGTTGGCAG+AGG | 0.650453 | 4.4:-39152403 | None:intergenic |
| CATGGTCGCCGTTTACAACG+TGG | 0.650964 | 4.4:+39150754 | MS.gene28330:CDS |
| ATACTACATCATCATTAGCA+CGG | 0.661033 | 4.4:-39151417 | None:intergenic |
| CTACTGTGGTTAGAAGAACA+TGG | 0.664085 | 4.4:+39150736 | MS.gene28330:CDS |
| ACACGCTTAACAAGAGACCA+AGG | 0.679161 | 4.4:-39150190 | None:intergenic |
| CTTGAAGATCAACACCCTCA+GGG | 0.683244 | 4.4:-39151276 | None:intergenic |
| TCAATGGAACCTGATGATGT+TGG | 0.689960 | 4.4:-39152409 | None:intergenic |
| GGACCAAAGAGAATCATCGG+AGG | 0.726604 | 4.4:-39149305 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATACATTTAAAGAA+AGG | - | chr4.4:39151501-39151520 | None:intergenic | 10.0% |
| !! | TTAAAAAAAAAACACATTTA+AGG | - | chr4.4:39149867-39149886 | None:intergenic | 10.0% |
| !! | AAAAAATAATTAATGTCGAT+GGG | + | chr4.4:39152837-39152856 | MS.gene28330:intron | 15.0% |
| !! | TAAAAAATAATTAATGTCGA+TGG | + | chr4.4:39152836-39152855 | MS.gene28330:intron | 15.0% |
| !! | TCTCCATTTATAAAAATAAA+TGG | - | chr4.4:39152926-39152945 | None:intergenic | 15.0% |
| !!! | AATTATGTTGTTTTATCATA+AGG | + | chr4.4:39149450-39149469 | MS.gene28330:intron | 15.0% |
| !!! | ATTTATTTTTATAAATGGAG+AGG | + | chr4.4:39152925-39152944 | MS.gene28330:intron | 15.0% |
| !!! | CTTCCATTTATTTTTATAAA+TGG | + | chr4.4:39152920-39152939 | MS.gene28330:intron | 15.0% |
| !! | AAACTTTGATACGATATAAA+TGG | - | chr4.4:39151060-39151079 | None:intergenic | 20.0% |
| !! | ATTTATCAAAGTAAGTAGTT+TGG | - | chr4.4:39152322-39152341 | None:intergenic | 20.0% |
| !! | TACATTTAAAGAAAGGATAT+TGG | - | chr4.4:39151494-39151513 | None:intergenic | 20.0% |
| !! | TAGATAATAGATAAGTGAAT+TGG | - | chr4.4:39151149-39151168 | None:intergenic | 20.0% |
| !! | TCATGTATATCAGATAAAAA+GGG | - | chr4.4:39152588-39152607 | None:intergenic | 20.0% |
| !! | TGTTTATCATATATTGAAGA+AGG | - | chr4.4:39153161-39153180 | None:intergenic | 20.0% |
| !! | TTATTTATTACCTATAAGTC+AGG | + | chr4.4:39150474-39150493 | MS.gene28330:CDS | 20.0% |
| !! | TTCATGTATATCAGATAAAA+AGG | - | chr4.4:39152589-39152608 | None:intergenic | 20.0% |
| !! | TTCATTATCTTTGATAAGTT+TGG | + | chr4.4:39152505-39152524 | MS.gene28330:intron | 20.0% |
| !! | TTCTTCAATATATGATAAAC+AGG | + | chr4.4:39153160-39153179 | MS.gene28330:intron | 20.0% |
| !!! | ATATCTAGAAAAGTATACAA+TGG | + | chr4.4:39151970-39151989 | MS.gene28330:intron | 20.0% |
| !!! | TCAAACTAATGTTAACTTTT+GGG | + | chr4.4:39153295-39153314 | MS.gene28330:intron | 20.0% |
| !!! | TTATTAAAGCAAAGTCATTT+TGG | - | chr4.4:39149976-39149995 | None:intergenic | 20.0% |
| !!! | TTCAAACTAATGTTAACTTT+TGG | + | chr4.4:39153294-39153313 | MS.gene28330:intron | 20.0% |
| ! | AATATAGAAGTCTATGTGTT+GGG | + | chr4.4:39152529-39152548 | MS.gene28330:intron | 25.0% |
| ! | ATATGAAAGTAATTGACATG+TGG | + | chr4.4:39150004-39150023 | MS.gene28330:intron | 25.0% |
| ! | ATTGAATCAATGACATTCAA+CGG | - | chr4.4:39153275-39153294 | None:intergenic | 25.0% |
| ! | ATTTAAAGAAAGGATATTGG+AGG | - | chr4.4:39151491-39151510 | None:intergenic | 25.0% |
| ! | CAAACAATAGATACTCTTTA+TGG | - | chr4.4:39152205-39152224 | None:intergenic | 25.0% |
| ! | CAACTATAAATACTTGCATT+CGG | - | chr4.4:39152289-39152308 | None:intergenic | 25.0% |
| ! | CATTAAATAACTGATGTATC+TGG | - | chr4.4:39149631-39149650 | None:intergenic | 25.0% |
| ! | GTATTTATAGTTGAATGAAG+TGG | + | chr4.4:39152296-39152315 | MS.gene28330:intron | 25.0% |
| ! | TCAAACTCAATTTCTTCTTA+AGG | - | chr4.4:39149482-39149501 | None:intergenic | 25.0% |
| ! | TGTTTCTTTATCTCTCAAAA+TGG | - | chr4.4:39152798-39152817 | None:intergenic | 25.0% |
| ! | TTATCTATTATCTAGATCAC+TGG | + | chr4.4:39151155-39151174 | MS.gene28330:intron | 25.0% |
| ! | TTCACATGAAAATTAATCAC+AGG | - | chr4.4:39151204-39151223 | None:intergenic | 25.0% |
| !! | AATTTTCGCATATATTCTGT+TGG | + | chr4.4:39151890-39151909 | MS.gene28330:intron | 25.0% |
| !! | ATTTTCGCATATATTCTGTT+GGG | + | chr4.4:39151891-39151910 | MS.gene28330:intron | 25.0% |
| !! | GTATCTATTGTTTGTAGTTT+TGG | + | chr4.4:39152211-39152230 | MS.gene28330:intron | 25.0% |
| !! | TCTTGGATTTTACACATTTT+GGG | + | chr4.4:39151792-39151811 | MS.gene28330:intron | 25.0% |
| !!! | ATGTCAAGTTTTATATGACA+TGG | - | chr4.4:39151008-39151027 | None:intergenic | 25.0% |
| AAGAAAATAAGTACCTCTCA+CGG | - | chr4.4:39151306-39151325 | None:intergenic | 30.0% | |
| ACACACAAAAGATAGATTGT+GGG | - | chr4.4:39152881-39152900 | None:intergenic | 30.0% | |
| ACTAACTAAATAGACACTTG+AGG | - | chr4.4:39149835-39149854 | None:intergenic | 30.0% | |
| ACTATCTTAGTTTATCTCCT+TGG | + | chr4.4:39151652-39151671 | MS.gene28330:intron | 30.0% | |
| AGGTATTAGAAACTAATCCA+AGG | - | chr4.4:39151672-39151691 | None:intergenic | 30.0% | |
| ATAAATACTTGCATTCGGAA+AGG | - | chr4.4:39152284-39152303 | None:intergenic | 30.0% | |
| ATACTACATCATCATTAGCA+CGG | - | chr4.4:39151420-39151439 | None:intergenic | 30.0% | |
| ATAGGCACCAATAACAATTT+GGG | + | chr4.4:39149734-39149753 | MS.gene28330:intron | 30.0% | |
| ATATAAATGGTAAAACGTCC+GGG | - | chr4.4:39151047-39151066 | None:intergenic | 30.0% | |
| ATATAGAAGTCTATGTGTTG+GGG | + | chr4.4:39152530-39152549 | MS.gene28330:intron | 30.0% | |
| ATCGATACTGTTGAAGTTAT+AGG | - | chr4.4:39151692-39151711 | None:intergenic | 30.0% | |
| ATCGATTGTCTTGAAAAATC+TGG | + | chr4.4:39151706-39151725 | MS.gene28330:intron | 30.0% | |
| ATCTCTCAAAATGGAAGAAA+TGG | - | chr4.4:39152789-39152808 | None:intergenic | 30.0% | |
| ATTCACGAAATGATCATAGA+AGG | - | chr4.4:39150452-39150471 | None:intergenic | 30.0% | |
| CAAAGATAATGAAATCACGT+GGG | - | chr4.4:39152498-39152517 | None:intergenic | 30.0% | |
| CAATATAGAAGTCTATGTGT+TGG | + | chr4.4:39152528-39152547 | MS.gene28330:intron | 30.0% | |
| GAATTTCATGTGTCAATAAC+AGG | + | chr4.4:39149269-39149288 | MS.gene28330:CDS | 30.0% | |
| GACTCTAATAATCCAAAGTT+AGG | - | chr4.4:39149550-39149569 | None:intergenic | 30.0% | |
| GATATAAATGGTAAAACGTC+CGG | - | chr4.4:39151048-39151067 | None:intergenic | 30.0% | |
| GTTATTGACACATGAAATTC+TGG | - | chr4.4:39149269-39149288 | None:intergenic | 30.0% | |
| TACACACAAAAGATAGATTG+TGG | - | chr4.4:39152882-39152901 | None:intergenic | 30.0% | |
| TCAAAGATAATGAAATCACG+TGG | - | chr4.4:39152499-39152518 | None:intergenic | 30.0% | |
| TCGATTGTCTTGAAAAATCT+GGG | + | chr4.4:39151707-39151726 | MS.gene28330:intron | 30.0% | |
| TCTATTGGTAAGAAGATTTC+TGG | - | chr4.4:39150638-39150657 | None:intergenic | 30.0% | |
| TCTTCAATTACCTGACTTAT+AGG | - | chr4.4:39150487-39150506 | None:intergenic | 30.0% | |
| TGATAAAACCACGTTGTAAA+CGG | - | chr4.4:39150765-39150784 | None:intergenic | 30.0% | |
| TTAAGTTATTACCCAAGCAT+CGG | - | chr4.4:39151755-39151774 | None:intergenic | 30.0% | |
| TTAGTACTAATGAGATGCAT+GGG | + | chr4.4:39150972-39150991 | MS.gene28330:intron | 30.0% | |
| TTCAAACCTTAATCTTTCCA+AGG | + | chr4.4:39153330-39153349 | MS.gene28330:intron | 30.0% | |
| ! | AGGAATTTTCTATGACATAC+AGG | + | chr4.4:39152557-39152576 | MS.gene28330:intron | 30.0% |
| ! | CAATTTGGGTAAAACCATTT+TGG | + | chr4.4:39149748-39149767 | MS.gene28330:intron | 30.0% |
| ! | CTCTTGGATTTTACACATTT+TGG | + | chr4.4:39151791-39151810 | MS.gene28330:intron | 30.0% |
| ! | GGTTTTACCCAAATTGTTAT+TGG | - | chr4.4:39149744-39149763 | None:intergenic | 30.0% |
| ! | TGGAAAAAGACTAATGCTTT+TGG | - | chr4.4:39150809-39150828 | None:intergenic | 30.0% |
| ! | TTGCATATATGCTTTTCTCT+TGG | + | chr4.4:39151775-39151794 | MS.gene28330:intron | 30.0% |
| !! | AAGCTTTTGTTATGTATCCT+TGG | + | chr4.4:39150173-39150192 | MS.gene28330:CDS | 30.0% |
| !! | AGCTATCTGGAATTTTCTTA+TGG | - | chr4.4:39152724-39152743 | None:intergenic | 30.0% |
| !!! | ATGGTTGGTTTTTTTCTCAT+TGG | + | chr4.4:39151107-39151126 | MS.gene28330:intron | 30.0% |
| !!! | ATGTTGTTTTGACATCTGTA+TGG | + | chr4.4:39153091-39153110 | MS.gene28330:intron | 30.0% |
| AAAGGTAAAGGAACCTTCAA+TGG | - | chr4.4:39152428-39152447 | None:intergenic | 35.0% | |
| AACAACATCTCACTCATTCA+GGG | + | chr4.4:39149949-39149968 | MS.gene28330:intron | 35.0% | |
| AACCTTAATCTTTCCAAGGA+TGG | + | chr4.4:39153334-39153353 | MS.gene28330:intron | 35.0% | |
| AACTGTCAAGTCAACTACTA+TGG | + | chr4.4:39153118-39153137 | MS.gene28330:intron | 35.0% | |
| AAGATCCAAGTATGTTCTTG+TGG | + | chr4.4:39150543-39150562 | MS.gene28330:CDS | 35.0% | |
| AAGTGCATTCTAACTGATCA+AGG | + | chr4.4:39151843-39151862 | MS.gene28330:intron | 35.0% | |
| ACCAATGGTCAACTATATGT+TGG | + | chr4.4:39150610-39150629 | MS.gene28330:CDS | 35.0% | |
| ACCTTAATCTTTCCAAGGAT+GGG | + | chr4.4:39153335-39153354 | MS.gene28330:intron | 35.0% | |
| AGAAAGGATATTGGAGGAAA+AGG | - | chr4.4:39151485-39151504 | None:intergenic | 35.0% | |
| ATCCTTTACCGCTTTCATAA+TGG | + | chr4.4:39150355-39150374 | MS.gene28330:CDS | 35.0% | |
| ATGTTATACTATATGCCTCC+CGG | + | chr4.4:39151026-39151045 | MS.gene28330:intron | 35.0% | |
| CAAAATGGAAGAAATGGAGA+AGG | - | chr4.4:39152783-39152802 | None:intergenic | 35.0% | |
| CAATAACTTTCCAGAAGCTA+AGG | + | chr4.4:39150249-39150268 | MS.gene28330:CDS | 35.0% | |
| CACACATTCATGAACCAAAA+TGG | - | chr4.4:39149765-39149784 | None:intergenic | 35.0% | |
| CATAGGCACCAATAACAATT+TGG | + | chr4.4:39149733-39149752 | MS.gene28330:intron | 35.0% | |
| CTACCTTACTCATAAACGAA+AGG | - | chr4.4:39153248-39153267 | None:intergenic | 35.0% | |
| CTCTGTTAGCATTGTTCATT+CGG | + | chr4.4:39150905-39150924 | MS.gene28330:intron | 35.0% | |
| CTTAGTACTAATGAGATGCA+TGG | + | chr4.4:39150971-39150990 | MS.gene28330:intron | 35.0% | |
| GAAAGGATATTGGAGGAAAA+GGG | - | chr4.4:39151484-39151503 | None:intergenic | 35.0% | |
| GAAATGGAGAAGGTCATAAA+TGG | - | chr4.4:39152773-39152792 | None:intergenic | 35.0% | |
| GATGTAGTATCTGATGTCAA+TGG | + | chr4.4:39151430-39151449 | MS.gene28330:CDS | 35.0% | |
| GTTGGGACAATATAAAAACC+TGG | + | chr4.4:39150221-39150240 | MS.gene28330:CDS | 35.0% | |
| TAAACAAACTCTTTGTCACC+TGG | - | chr4.4:39152370-39152389 | None:intergenic | 35.0% | |
| TAACAACATCTCACTCATTC+AGG | + | chr4.4:39149948-39149967 | MS.gene28330:intron | 35.0% | |
| TACAAAGAAAGAGACACTTG+TGG | + | chr4.4:39149907-39149926 | MS.gene28330:intron | 35.0% | |
| TATGAGAACATGAGATTGTC+CGG | + | chr4.4:39153012-39153031 | MS.gene28330:intron | 35.0% | |
| TCCAACATATAGTTGACCAT+TGG | - | chr4.4:39150614-39150633 | None:intergenic | 35.0% | |
| TCCTTTACCGCTTTCATAAT+GGG | + | chr4.4:39150356-39150375 | MS.gene28330:CDS | 35.0% | |
| TCTCCTTTCGTTTATGAGTA+AGG | + | chr4.4:39153242-39153261 | MS.gene28330:intron | 35.0% | |
| TCTGTTAGCATTGTTCATTC+GGG | + | chr4.4:39150906-39150925 | MS.gene28330:intron | 35.0% | |
| TGAAATTCTGGCAATGTCTT+CGG | - | chr4.4:39149257-39149276 | None:intergenic | 35.0% | |
| TGCAAACTAATCAGATTCTG+AGG | - | chr4.4:39150679-39150698 | None:intergenic | 35.0% | |
| TTACAGCAGTTGAACAAAGA+GGG | - | chr4.4:39150840-39150859 | None:intergenic | 35.0% | |
| TTCTTTCTCAACTGTACCAA+TGG | + | chr4.4:39150595-39150614 | MS.gene28330:CDS | 35.0% | |
| TTGAAGTTTATCTTCCAGCA+GGG | + | chr4.4:39151934-39151953 | MS.gene28330:intron | 35.0% | |
| TTGATCAGTTAGAATGCACT+TGG | - | chr4.4:39151844-39151863 | None:intergenic | 35.0% | |
| TTTATCAAACTGCTCGAAGA+AGG | + | chr4.4:39150778-39150797 | MS.gene28330:CDS | 35.0% | |
| TTTCTTGCCCATTATGAAAG+CGG | - | chr4.4:39150366-39150385 | None:intergenic | 35.0% | |
| TTTGGACCAAAGAGAATCAT+CGG | - | chr4.4:39149311-39149330 | None:intergenic | 35.0% | |
| ! | AAAAGAAAAGCATACCTTCC+AGG | - | chr4.4:39152454-39152473 | None:intergenic | 35.0% |
| ! | ACTTCTTTGGGAATTATTGG+TGG | + | chr4.4:39150421-39150440 | MS.gene28330:CDS | 35.0% |
| ! | ATTTATAGCTTGCAAGCAGA+CGG | + | chr4.4:39152116-39152135 | MS.gene28330:intron | 35.0% |
| ! | CTTAGCTTCTGGAAAGTTAT+TGG | - | chr4.4:39150251-39150270 | None:intergenic | 35.0% |
| ! | TACCTTAACGGTGTATTTTC+CGG | + | chr4.4:39153048-39153067 | MS.gene28330:intron | 35.0% |
| ! | TCATAAACGCTGTACTGTTT+TGG | + | chr4.4:39152167-39152186 | MS.gene28330:intron | 35.0% |
| ! | TCCAGATTTTACGAGACTTA+GGG | - | chr4.4:39152033-39152052 | None:intergenic | 35.0% |
| !! | CTTTGAGGTATGTACCTTAA+CGG | + | chr4.4:39153036-39153055 | MS.gene28330:intron | 35.0% |
| !! | GATTAGTTTGCATCATGAGA+TGG | + | chr4.4:39150687-39150706 | MS.gene28330:CDS | 35.0% |
| !!! | TTTTCTCATTGGTGTTGCAT+GGG | + | chr4.4:39151118-39151137 | MS.gene28330:intron | 35.0% |
| !!! | TTTTTCTCATTGGTGTTGCA+TGG | + | chr4.4:39151117-39151136 | MS.gene28330:intron | 35.0% |
| AACACTTCAGATTGAAGGTC+TGG | - | chr4.4:39150066-39150085 | None:intergenic | 40.0% | |
| AAGAAAGAGACACTTGTGGA+TGG | + | chr4.4:39149911-39149930 | MS.gene28330:intron | 40.0% | |
| AAGGTACATACCTCAAAGAC+CGG | - | chr4.4:39153034-39153053 | None:intergenic | 40.0% | |
| AATAAAGCTGGCAAGAACTG+TGG | - | chr4.4:39151381-39151400 | None:intergenic | 40.0% | |
| AATCTTTCCAAGGATGGGAT+GGG | + | chr4.4:39153340-39153359 | MS.gene28330:intron | 40.0% | |
| AATTGAGTTTGAATCCCAGC+TGG | + | chr4.4:39149490-39149509 | MS.gene28330:intron | 40.0% | |
| ACACCAACACTTCAGATTGA+AGG | - | chr4.4:39150071-39150090 | None:intergenic | 40.0% | |
| ACACTTCAGATTGAAGGTCT+GGG | - | chr4.4:39150065-39150084 | None:intergenic | 40.0% | |
| ACATCATCAGGTTCCATTGA+AGG | + | chr4.4:39152412-39152431 | MS.gene28330:CDS | 40.0% | |
| ACATGGCATCAAGTCTCTAT+TGG | - | chr4.4:39150653-39150672 | None:intergenic | 40.0% | |
| ACCCTAAGTCTCGTAAAATC+TGG | + | chr4.4:39152029-39152048 | MS.gene28330:intron | 40.0% | |
| ACTCAACCCATTGATCATCT+CGG | + | chr4.4:39149355-39149374 | MS.gene28330:CDS | 40.0% | |
| AGAAGCTGAGATTCAAGAGT+TGG | + | chr4.4:39150294-39150313 | MS.gene28330:CDS | 40.0% | |
| AGGATCTCAACTCGTTGTTT+AGG | + | chr4.4:39152945-39152964 | MS.gene28330:intron | 40.0% | |
| AGGATCTCACTACTAGCTAT+TGG | + | chr4.4:39153180-39153199 | MS.gene28330:intron | 40.0% | |
| ATAAAGCTGGCAAGAACTGT+GGG | - | chr4.4:39151380-39151399 | None:intergenic | 40.0% | |
| ATGCTAACAGAGCAAGCATA+AGG | - | chr4.4:39150897-39150916 | None:intergenic | 40.0% | |
| CAAAGAGTTTCCTTAGCTTC+TGG | - | chr4.4:39150262-39150281 | None:intergenic | 40.0% | |
| CAGCAAATTTCGCACAACTT+AGG | + | chr4.4:39150511-39150530 | MS.gene28330:CDS | 40.0% | |
| CAGTCAATCAATGCATGCAT+CGG | - | chr4.4:39152066-39152085 | None:intergenic | 40.0% | |
| CCAACAGTCAAGCATGTATT+AGG | - | chr4.4:39151561-39151580 | None:intergenic | 40.0% | |
| CCTAATACATGCTTGACTGT+TGG | + | chr4.4:39151558-39151577 | MS.gene28330:intron | 40.0% | |
| CTACTGTGGTTAGAAGAACA+TGG | + | chr4.4:39150736-39150755 | MS.gene28330:CDS | 40.0% | |
| CTCTTGTTAAGCGTGTCAAA+AGG | + | chr4.4:39150197-39150216 | MS.gene28330:CDS | 40.0% | |
| GAAATGAAGAGTGACCTTGA+AGG | - | chr4.4:39149395-39149414 | None:intergenic | 40.0% | |
| GAAATTCTGGCAATGTCTTC+GGG | - | chr4.4:39149256-39149275 | None:intergenic | 40.0% | |
| GAACAACTTCTCACTGTAAG+TGG | - | chr4.4:39150578-39150597 | None:intergenic | 40.0% | |
| GCTAAGGAAACTCTTTGTGA+AGG | + | chr4.4:39150265-39150284 | MS.gene28330:CDS | 40.0% | |
| GGATCTCAACTCGTTGTTTA+GGG | + | chr4.4:39152946-39152965 | MS.gene28330:intron | 40.0% | |
| GTCAATGGAGAAGCTGTTAT+AGG | + | chr4.4:39151445-39151464 | MS.gene28330:CDS | 40.0% | |
| GTTACAGCAGTTGAACAAAG+AGG | - | chr4.4:39150841-39150860 | None:intergenic | 40.0% | |
| GTTGAAGTTTATCTTCCAGC+AGG | + | chr4.4:39151933-39151952 | MS.gene28330:intron | 40.0% | |
| GTTGAGTGAGAGAAAGTTCA+CGG | - | chr4.4:39149342-39149361 | None:intergenic | 40.0% | |
| GTTGTTTAGGGACTTCAGAA+TGG | + | chr4.4:39152958-39152977 | MS.gene28330:intron | 40.0% | |
| TAAAGGATCCTTGTAGGAAG+AGG | - | chr4.4:39150343-39150362 | None:intergenic | 40.0% | |
| TAATCCAAAGTTAGGTCGAG+AGG | - | chr4.4:39149542-39149561 | None:intergenic | 40.0% | |
| TAATCTTTCCAAGGATGGGA+TGG | + | chr4.4:39153339-39153358 | MS.gene28330:intron | 40.0% | |
| TACAGCAGTTGAACAAAGAG+GGG | - | chr4.4:39150839-39150858 | None:intergenic | 40.0% | |
| TATGTATGTCTCCGATGCTT+GGG | + | chr4.4:39151741-39151760 | MS.gene28330:intron | 40.0% | |
| TCAAATTGCCTCTTCCTACA+AGG | + | chr4.4:39150332-39150351 | MS.gene28330:CDS | 40.0% | |
| TCCCATCCTTGGAAAGATTA+AGG | - | chr4.4:39153339-39153358 | None:intergenic | 40.0% | |
| TCTGCTAAACAACAGCTATC+TGG | - | chr4.4:39152737-39152756 | None:intergenic | 40.0% | |
| TGCAAGATCAGCTCATAACA+AGG | - | chr4.4:39152009-39152028 | None:intergenic | 40.0% | |
| TGCAGGAAGCTTATCAAACT+TGG | + | chr4.4:39150146-39150165 | MS.gene28330:intron | 40.0% | |
| TGCTAACAGAGCAAGCATAA+GGG | - | chr4.4:39150896-39150915 | None:intergenic | 40.0% | |
| TGGAGAAGCTGTTATAGGAA+TGG | + | chr4.4:39151450-39151469 | MS.gene28330:CDS | 40.0% | |
| TGTTCAACTGCTGTAACCAA+TGG | + | chr4.4:39150844-39150863 | MS.gene28330:CDS | 40.0% | |
| TTCAGAATGGCCAAGTAAGT+TGG | + | chr4.4:39152971-39152990 | MS.gene28330:intron | 40.0% | |
| TTCTTCTAACCACAGTAGCA+TGG | - | chr4.4:39150734-39150753 | None:intergenic | 40.0% | |
| TTGCGATTTCGATACATCCA+TGG | - | chr4.4:39149806-39149825 | None:intergenic | 40.0% | |
| ! | AAGTTCACGGAAGCAGATTT+TGG | - | chr4.4:39149329-39149348 | None:intergenic | 40.0% |
| ! | AATGGCCAAGTAAGTTGGAT+AGG | + | chr4.4:39152976-39152995 | MS.gene28330:intron | 40.0% |
| ! | ACAGTTCTTGCCAGCTTTAT+TGG | + | chr4.4:39151380-39151399 | MS.gene28330:CDS | 40.0% |
| ! | ACATCCATGGACTATAAGGA+CGG | - | chr4.4:39149793-39149812 | None:intergenic | 40.0% |
| ! | ACCTTAACGGTGTATTTTCC+GGG | + | chr4.4:39153049-39153068 | MS.gene28330:intron | 40.0% |
| ! | AGACCTTCAATCTGAAGTGT+TGG | + | chr4.4:39150065-39150084 | MS.gene28330:intron | 40.0% |
| ! | ATCAGATTCTGAGGAACACA+TGG | - | chr4.4:39150670-39150689 | None:intergenic | 40.0% |
| ! | ATGGCCAAGTAAGTTGGATA+GGG | + | chr4.4:39152977-39152996 | MS.gene28330:intron | 40.0% |
| ! | CGATACATCCATGGACTATA+AGG | - | chr4.4:39149797-39149816 | None:intergenic | 40.0% |
| ! | CTCCAGATTTTACGAGACTT+AGG | - | chr4.4:39152034-39152053 | None:intergenic | 40.0% |
| ! | GGCACTTCTTTGGGAATTAT+TGG | + | chr4.4:39150418-39150437 | MS.gene28330:CDS | 40.0% |
| ! | TCAATGGAACCTGATGATGT+TGG | - | chr4.4:39152412-39152431 | None:intergenic | 40.0% |
| ! | TGTATTTTCCGGGTCAAATG+AGG | + | chr4.4:39153059-39153078 | MS.gene28330:intron | 40.0% |
| ! | TGTGGATGGATTTGCAACTT+TGG | + | chr4.4:39149925-39149944 | MS.gene28330:intron | 40.0% |
| ! | TTAAGCGTGTCAAAAGGTGT+TGG | + | chr4.4:39150203-39150222 | MS.gene28330:CDS | 40.0% |
| ! | TTTATAGCTTGCAAGCAGAC+GGG | + | chr4.4:39152117-39152136 | MS.gene28330:intron | 40.0% |
| !! | CATGAGTTTTGATGCTTGCA+AGG | - | chr4.4:39153375-39153394 | None:intergenic | 40.0% |
| !! | TAAACGCTGTACTGTTTTGG+TGG | + | chr4.4:39152170-39152189 | MS.gene28330:intron | 40.0% |
| !! | TAAGCGTGTCAAAAGGTGTT+GGG | + | chr4.4:39150204-39150223 | MS.gene28330:CDS | 40.0% |
| !! | TTCAATCTGAAGTGTTGGTG+TGG | + | chr4.4:39150070-39150089 | MS.gene28330:intron | 40.0% |
| !! | TTCTAAAACTGATTCCCTGC+TGG | - | chr4.4:39151951-39151970 | None:intergenic | 40.0% |
| AAGAGTGACCTTGAAGGAAG+GGG | - | chr4.4:39149389-39149408 | None:intergenic | 45.0% | |
| AAGCGGTAAAGGATCCTTGT+AGG | - | chr4.4:39150349-39150368 | None:intergenic | 45.0% | |
| ACACGCTTAACAAGAGACCA+AGG | - | chr4.4:39150193-39150212 | None:intergenic | 45.0% | |
| ACATGTGGTCAGTGTCGTAT+GGG | + | chr4.4:39150019-39150038 | MS.gene28330:intron | 45.0% | |
| ACCCGGAAAATACACCGTTA+AGG | - | chr4.4:39153053-39153072 | None:intergenic | 45.0% | |
| ACTGATCAAGGTCTGATTGC+TGG | + | chr4.4:39151855-39151874 | MS.gene28330:intron | 45.0% | |
| ACTTCAGATTGAAGGTCTGG+GGG | - | chr4.4:39150063-39150082 | None:intergenic | 45.0% | |
| AGCAGCCACAAGAACATACT+TGG | - | chr4.4:39150551-39150570 | None:intergenic | 45.0% | |
| AGCATACCTTCCAGGTACAA+AGG | - | chr4.4:39152446-39152465 | None:intergenic | 45.0% | |
| AGCTGAGATTCAAGAGTTGG+AGG | + | chr4.4:39150297-39150316 | MS.gene28330:CDS | 45.0% | |
| AGTCTATGTGTTGGGGTTTG+AGG | + | chr4.4:39152537-39152556 | MS.gene28330:intron | 45.0% | |
| AGTGACACATAGACGAACAC+CGG | + | chr4.4:39149689-39149708 | MS.gene28330:intron | 45.0% | |
| AGTGCTAGGCTTAGTTGAAC+TGG | + | chr4.4:39152091-39152110 | MS.gene28330:intron | 45.0% | |
| AGTTTGAATCCCAGCTGGAA+CGG | + | chr4.4:39149495-39149514 | MS.gene28330:intron | 45.0% | |
| ATCTTCAAGATGACCGTGAG+AGG | + | chr4.4:39151290-39151309 | MS.gene28330:CDS | 45.0% | |
| ATCTTTCCAAGGATGGGATG+GGG | + | chr4.4:39153341-39153360 | MS.gene28330:intron | 45.0% | |
| ATGAGATTGTCCGGTCTTTG+AGG | + | chr4.4:39153021-39153040 | MS.gene28330:intron | 45.0% | |
| CACACATCCTTGAGGTTGTA+AGG | - | chr4.4:39151344-39151363 | None:intergenic | 45.0% | |
| CACTTCAGATTGAAGGTCTG+GGG | - | chr4.4:39150064-39150083 | None:intergenic | 45.0% | |
| CCATTGATCACACATCCTTG+AGG | - | chr4.4:39151352-39151371 | None:intergenic | 45.0% | |
| CCTCAAGGATGTGTGATCAA+TGG | + | chr4.4:39151349-39151368 | MS.gene28330:CDS | 45.0% | |
| CCTTCCAGGTACAAAGGTAA+AGG | - | chr4.4:39152440-39152459 | None:intergenic | 45.0% | |
| CCTTTACCTTTGTACCTGGA+AGG | + | chr4.4:39152437-39152456 | MS.gene28330:CDS | 45.0% | |
| CTATGTATGTCTCCGATGCT+TGG | + | chr4.4:39151740-39151759 | MS.gene28330:intron | 45.0% | |
| CTCTGTCTATCTTAACCCCT+CGG | - | chr4.4:39149586-39149605 | None:intergenic | 45.0% | |
| CTTACCTCTCGACCTAACTT+TGG | + | chr4.4:39149535-39149554 | MS.gene28330:intron | 45.0% | |
| CTTGAAGATCAACACCCTCA+GGG | - | chr4.4:39151279-39151298 | None:intergenic | 45.0% | |
| CTTGAGGTTGTAAGGACATG+CGG | - | chr4.4:39151336-39151355 | None:intergenic | 45.0% | |
| GAACAAAGAGGGGATTCTTC+TGG | - | chr4.4:39150829-39150848 | None:intergenic | 45.0% | |
| GAAGAGTGACCTTGAAGGAA+GGG | - | chr4.4:39149390-39149409 | None:intergenic | 45.0% | |
| GACACATCTGGCACTTCTTT+GGG | + | chr4.4:39150409-39150428 | MS.gene28330:CDS | 45.0% | |
| GATGGACAGCGAAAAGATTC+AGG | + | chr4.4:39150705-39150724 | MS.gene28330:CDS | 45.0% | |
| GATTGACTGCATTCAGTGCT+AGG | + | chr4.4:39152077-39152096 | MS.gene28330:intron | 45.0% | |
| GCATTTGAGGAGAGAATGGT+TGG | + | chr4.4:39151092-39151111 | MS.gene28330:intron | 45.0% | |
| GCCCATTATGAAAGCGGTAA+AGG | - | chr4.4:39150360-39150379 | None:intergenic | 45.0% | |
| GCTAACAGAGCAAGCATAAG+GGG | - | chr4.4:39150895-39150914 | None:intergenic | 45.0% | |
| GGAGAAGGTCATAAATGGAG+AGG | - | chr4.4:39152768-39152787 | None:intergenic | 45.0% | |
| GGGTTTCCGAGATGATCAAT+GGG | - | chr4.4:39149364-39149383 | None:intergenic | 45.0% | |
| GGTTCCTTTACCTTTGTACC+TGG | + | chr4.4:39152433-39152452 | MS.gene28330:CDS | 45.0% | |
| TAAATGGTAAAACGTCCGGG+AGG | - | chr4.4:39151044-39151063 | None:intergenic | 45.0% | |
| TACACCGTCCTTATAGTCCA+TGG | + | chr4.4:39149786-39149805 | MS.gene28330:intron | 45.0% | |
| TCACCCCTATCCAACTTACT+TGG | - | chr4.4:39152984-39153003 | None:intergenic | 45.0% | |
| TCACCTCCGATGATTCTCTT+TGG | + | chr4.4:39149302-39149321 | MS.gene28330:CDS | 45.0% | |
| TCACTATCAGTGGTCATGTC+CGG | - | chr4.4:39149711-39149730 | None:intergenic | 45.0% | |
| TCTTGAAGATCAACACCCTC+AGG | - | chr4.4:39151280-39151299 | None:intergenic | 45.0% | |
| TGAAGAGTGACCTTGAAGGA+AGG | - | chr4.4:39149391-39149410 | None:intergenic | 45.0% | |
| TGCTGCATTTGAGGAGAGAA+TGG | + | chr4.4:39151088-39151107 | MS.gene28330:intron | 45.0% | |
| TGCTTGCGAGGTTGAAATTG+AGG | - | chr4.4:39152147-39152166 | None:intergenic | 45.0% | |
| TGGAAAGTTATTGGTGAGCC+AGG | - | chr4.4:39150242-39150261 | None:intergenic | 45.0% | |
| TTCATCCCACAAGTTCAACC+CGG | - | chr4.4:39152689-39152708 | None:intergenic | 45.0% | |
| ! | AAGATACCGGGTTGAACTTG+TGG | + | chr4.4:39152680-39152699 | MS.gene28330:intron | 45.0% |
| ! | AGATACCGGGTTGAACTTGT+GGG | + | chr4.4:39152681-39152700 | MS.gene28330:intron | 45.0% |
| ! | AGTAAGTTGGATAGGGGTGA+TGG | + | chr4.4:39152984-39153003 | MS.gene28330:intron | 45.0% |
| ! | GACCACTGATAGTGACACAT+AGG | + | chr4.4:39149716-39149735 | MS.gene28330:intron | 45.0% |
| ! | TCTGAGATCTGCTGCATTTG+AGG | + | chr4.4:39151079-39151098 | MS.gene28330:intron | 45.0% |
| ! | TGCCTATGTGTCACTATCAG+TGG | - | chr4.4:39149721-39149740 | None:intergenic | 45.0% |
| ! | TGGCCAAGTAAGTTGGATAG+GGG | + | chr4.4:39152978-39152997 | MS.gene28330:intron | 45.0% |
| !! | CAAAGAAGTGCCAGATGTGT+CGG | - | chr4.4:39150410-39150429 | None:intergenic | 45.0% |
| !! | GTATGTGAGTGTTGAGCCAT+GGG | + | chr4.4:39152645-39152664 | MS.gene28330:intron | 45.0% |
| !! | GTTCTTGCCAGCTTTATTGG+AGG | + | chr4.4:39151383-39151402 | MS.gene28330:CDS | 45.0% |
| !! | TGTATGTGAGTGTTGAGCCA+TGG | + | chr4.4:39152644-39152663 | MS.gene28330:intron | 45.0% |
| !! | TGTGTTTTGTTGTGCTGTGC+AGG | + | chr4.4:39150129-39150148 | MS.gene28330:intron | 45.0% |
| ATCTTAACCCCTCGGTCACA+AGG | - | chr4.4:39149578-39149597 | None:intergenic | 50.0% | |
| CAGCGTTTATGATGCTTGCG+AGG | - | chr4.4:39152159-39152178 | None:intergenic | 50.0% | |
| CGACACATCTGGCACTTCTT+TGG | + | chr4.4:39150408-39150427 | MS.gene28330:CDS | 50.0% | |
| CGCATGTCCTTACAACCTCA+AGG | + | chr4.4:39151334-39151353 | MS.gene28330:CDS | 50.0% | |
| GACATGTGGTCAGTGTCGTA+TGG | + | chr4.4:39150018-39150037 | MS.gene28330:intron | 50.0% | |
| GACCACAACCTCATTTGACC+CGG | - | chr4.4:39153070-39153089 | None:intergenic | 50.0% | |
| GATCACGATACCGACACATC+TGG | + | chr4.4:39150397-39150416 | MS.gene28330:CDS | 50.0% | |
| GATGGGATCCACTTAGTGGT+AGG | + | chr4.4:39152854-39152873 | MS.gene28330:intron | 50.0% | |
| GGACCAAAGAGAATCATCGG+AGG | - | chr4.4:39149308-39149327 | None:intergenic | 50.0% | |
| GGGGTTTCCGAGATGATCAA+TGG | - | chr4.4:39149365-39149384 | None:intergenic | 50.0% | |
| GTAACCAATGGTGTGCAGGT+AGG | + | chr4.4:39150856-39150875 | MS.gene28330:intron | 50.0% | |
| TCACCTCTGCCAACATCATC+AGG | + | chr4.4:39152400-39152419 | MS.gene28330:CDS | 50.0% | |
| TCCAGTGCCTCCAATAAAGC+TGG | - | chr4.4:39151393-39151412 | None:intergenic | 50.0% | |
| TCTGCATTGCTTGTCCCTGA+GGG | + | chr4.4:39151262-39151281 | MS.gene28330:CDS | 50.0% | |
| TCTTAACCCCTCGGTCACAA+GGG | - | chr4.4:39149577-39149596 | None:intergenic | 50.0% | |
| TGCTGTAACCAATGGTGTGC+AGG | + | chr4.4:39150852-39150871 | MS.gene28330:CDS | 50.0% | |
| TGTCACCTGGACGCAAAAGT+GGG | - | chr4.4:39152357-39152376 | None:intergenic | 50.0% | |
| TGTCGATGGGATCCACTTAG+TGG | + | chr4.4:39152850-39152869 | MS.gene28330:intron | 50.0% | |
| TTCAGGATGCCATGCTACTG+TGG | + | chr4.4:39150722-39150741 | MS.gene28330:CDS | 50.0% | |
| TTCCGGGTCAAATGAGGTTG+TGG | + | chr4.4:39153065-39153084 | MS.gene28330:intron | 50.0% | |
| TTGTCACCTGGACGCAAAAG+TGG | - | chr4.4:39152358-39152377 | None:intergenic | 50.0% | |
| TTGTGGGTCCTACCACTAAG+TGG | - | chr4.4:39152865-39152884 | None:intergenic | 50.0% | |
| ! | GAACCTGATGATGTTGGCAG+AGG | - | chr4.4:39152406-39152425 | None:intergenic | 50.0% |
| !! | AGTTGGATAGGGGTGATGGA+TGG | + | chr4.4:39152988-39153007 | MS.gene28330:intron | 50.0% |
| AAACCCCACCCCTTCCTTCA+AGG | + | chr4.4:39149378-39149397 | MS.gene28330:CDS | 55.0% | |
| AGTCCTTTCCCTTGTGACCG+AGG | + | chr4.4:39149566-39149585 | MS.gene28330:intron | 55.0% | |
| AGTGACCTTGAAGGAAGGGG+TGG | - | chr4.4:39149386-39149405 | None:intergenic | 55.0% | |
| ATCCCAGCTGGAACGGTCTT+TGG | + | chr4.4:39149502-39149521 | MS.gene28330:intron | 55.0% | |
| CATGGTCGCCGTTTACAACG+TGG | + | chr4.4:39150754-39150773 | MS.gene28330:CDS | 55.0% | |
| CTCAGGGACAAGCAATGCAG+AGG | - | chr4.4:39151263-39151282 | None:intergenic | 55.0% | |
| CTCTCCTACCTGCACACCAT+TGG | - | chr4.4:39150863-39150882 | None:intergenic | 55.0% | |
| CTCTGCATTGCTTGTCCCTG+AGG | + | chr4.4:39151261-39151280 | MS.gene28330:CDS | 55.0% | |
| GACCAAAGACCGTTCCAGCT+GGG | - | chr4.4:39149507-39149526 | None:intergenic | 55.0% | |
| GTCCTTTCCCTTGTGACCGA+GGG | + | chr4.4:39149567-39149586 | MS.gene28330:intron | 55.0% | |
| GTGACCTTGAAGGAAGGGGT+GGG | - | chr4.4:39149385-39149404 | None:intergenic | 55.0% | |
| TCCTTTCCCTTGTGACCGAG+GGG | + | chr4.4:39149568-39149587 | MS.gene28330:intron | 55.0% | |
| TGACCAAAGACCGTTCCAGC+TGG | - | chr4.4:39149508-39149527 | None:intergenic | 55.0% | |
| TGACCTTGAAGGAAGGGGTG+GGG | - | chr4.4:39149384-39149403 | None:intergenic | 55.0% | |
| !! | CAGTACCCACTTTTGCGTCC+AGG | + | chr4.4:39152349-39152368 | MS.gene28330:intron | 55.0% |
| !! | GCCAGCTTTATTGGAGGCAC+TGG | + | chr4.4:39151389-39151408 | MS.gene28330:CDS | 55.0% |
| !! | GTGAGTGTTGAGCCATGGGT+GGG | + | chr4.4:39152649-39152668 | MS.gene28330:intron | 55.0% |
| !! | GTGGGGGGTGTTGAAGATAC+CGG | + | chr4.4:39152667-39152686 | MS.gene28330:intron | 55.0% |
| !! | TGAGTGTTGAGCCATGGGTG+GGG | + | chr4.4:39152650-39152669 | MS.gene28330:intron | 55.0% |
| !! | TGGGGGGTGTTGAAGATACC+GGG | + | chr4.4:39152668-39152687 | MS.gene28330:intron | 55.0% |
| !! | TGTGAGTGTTGAGCCATGGG+TGG | + | chr4.4:39152648-39152667 | MS.gene28330:intron | 55.0% |
| ACCCCTCGGTCACAAGGGAA+AGG | - | chr4.4:39149572-39149591 | None:intergenic | 60.0% | |
| TCCAAGGATGGGATGGGGTG+TGG | + | chr4.4:39153346-39153365 | MS.gene28330:intron | 60.0% | |
| TCCACACCCCATCCCATCCT+TGG | - | chr4.4:39153350-39153369 | None:intergenic | 60.0% | |
| TCTTCAACACCCCCCACCCA+TGG | - | chr4.4:39152664-39152683 | None:intergenic | 60.0% | |
| ! | AGTGTTGAGCCATGGGTGGG+GGG | + | chr4.4:39152652-39152671 | MS.gene28330:intron | 60.0% |
| !! | GAGTGTTGAGCCATGGGTGG+GGG | + | chr4.4:39152651-39152670 | MS.gene28330:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39149238 | 39153442 | 39149238 | ID=MS.gene28330 |
| chr4.4 | mRNA | 39149238 | 39153442 | 39149238 | ID=MS.gene28330.t1;Parent=MS.gene28330 |
| chr4.4 | exon | 39149238 | 39149399 | 39149238 | ID=MS.gene28330.t1.exon1;Parent=MS.gene28330.t1 |
| chr4.4 | CDS | 39149238 | 39149399 | 39149238 | ID=cds.MS.gene28330.t1;Parent=MS.gene28330.t1 |
| chr4.4 | exon | 39150151 | 39150873 | 39150151 | ID=MS.gene28330.t1.exon2;Parent=MS.gene28330.t1 |
| chr4.4 | CDS | 39150151 | 39150873 | 39150151 | ID=cds.MS.gene28330.t1;Parent=MS.gene28330.t1 |
| chr4.4 | exon | 39151253 | 39151471 | 39151253 | ID=MS.gene28330.t1.exon3;Parent=MS.gene28330.t1 |
| chr4.4 | CDS | 39151253 | 39151471 | 39151253 | ID=cds.MS.gene28330.t1;Parent=MS.gene28330.t1 |
| chr4.4 | exon | 39152352 | 39152458 | 39152352 | ID=MS.gene28330.t1.exon4;Parent=MS.gene28330.t1 |
| chr4.4 | CDS | 39152352 | 39152458 | 39152352 | ID=cds.MS.gene28330.t1;Parent=MS.gene28330.t1 |
| chr4.4 | exon | 39153352 | 39153442 | 39153352 | ID=MS.gene28330.t1.exon5;Parent=MS.gene28330.t1 |
| chr4.4 | CDS | 39153352 | 39153442 | 39153352 | ID=cds.MS.gene28330.t1;Parent=MS.gene28330.t1 |
| Gene Sequence |
| Protein sequence |
