Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29054.t1 | XP_003601103.1 | 99.5 | 196 | 1 | 0 | 1 | 196 | 80 | 275 | 1.50E-105 | 392.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29054.t1 | Q9LIG6 | 84.5 | 194 | 30 | 0 | 1 | 194 | 86 | 279 | 1.6e-92 | 340.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29054.t1 | G7J3M0 | 99.5 | 196 | 1 | 0 | 1 | 196 | 80 | 275 | 1.1e-105 | 392.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038497 | MS.gene29054 | PPI |
| MS.gene25969 | MS.gene29054 | PPI |
| MS.gene61049 | MS.gene29054 | PPI |
| MS.gene83301 | MS.gene29054 | PPI |
| MS.gene009043 | MS.gene29054 | PPI |
| MS.gene009053 | MS.gene29054 | PPI |
| MS.gene70632 | MS.gene29054 | PPI |
| MS.gene29363 | MS.gene29054 | PPI |
| MS.gene069794 | MS.gene29054 | PPI |
| MS.gene022304 | MS.gene29054 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29054.t1 | MTR_3g073070 | 99.490 | 196 | 1 | 0 | 1 | 196 | 80 | 275 | 2.87e-144 | 402 |
| MS.gene29054.t1 | MTR_1g069215 | 98.469 | 196 | 3 | 0 | 1 | 196 | 82 | 277 | 1.16e-142 | 398 |
| MS.gene29054.t1 | MTR_3g073070 | 95.604 | 182 | 8 | 0 | 1 | 182 | 80 | 261 | 3.67e-128 | 362 |
| MS.gene29054.t1 | MTR_2g005900 | 46.269 | 67 | 34 | 1 | 119 | 185 | 85 | 149 | 1.58e-12 | 64.3 |
| MS.gene29054.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 119 | 185 | 103 | 167 | 3.07e-12 | 63.2 |
| MS.gene29054.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 119 | 185 | 103 | 167 | 4.63e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29054.t1 | AT3G20970 | 84.536 | 194 | 30 | 0 | 1 | 194 | 86 | 279 | 1.31e-123 | 350 |
| MS.gene29054.t1 | AT1G51390 | 83.957 | 187 | 30 | 0 | 1 | 187 | 81 | 267 | 5.77e-119 | 338 |
| MS.gene29054.t1 | AT3G20970 | 84.672 | 137 | 21 | 0 | 1 | 137 | 86 | 222 | 1.53e-84 | 249 |
| MS.gene29054.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 119 | 185 | 97 | 161 | 4.97e-13 | 65.1 |
| MS.gene29054.t1 | AT4G25910 | 47.761 | 67 | 33 | 1 | 119 | 185 | 96 | 160 | 6.79e-13 | 65.5 |
| MS.gene29054.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 119 | 185 | 97 | 161 | 8.72e-13 | 65.1 |
Find 48 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATCAAGGAACTTT+TGG | 0.209765 | 3.4:+71984088 | MS.gene29054:CDS |
| TGAAATCTTTGCCGCTATTA+TGG | 0.218248 | 3.4:+71983007 | MS.gene29054:CDS |
| CCACGATGCATCTTCCGATT+TGG | 0.310465 | 3.4:-71982970 | None:intergenic |
| TTCATAGCGGAACGAGGGTT+CGG | 0.314773 | 3.4:-71982755 | None:intergenic |
| ATAATAGCGGCAAAGATTTC+AGG | 0.329502 | 3.4:-71983005 | None:intergenic |
| ATCATGAATTGCTGTGTCTT+TGG | 0.335385 | 3.4:-71983081 | None:intergenic |
| ATTATGGATTTCTACTCTTC+CGG | 0.349184 | 3.4:+71983023 | MS.gene29054:CDS |
| AACATAAGAGACTCTGGATT+TGG | 0.370612 | 3.4:-71982689 | None:intergenic |
| TCATAGCGGAACGAGGGTTC+GGG | 0.382077 | 3.4:-71982754 | None:intergenic |
| GGAACGAGGGTTCGGGAAAT+CGG | 0.395541 | 3.4:-71982747 | None:intergenic |
| CAAAGGTGTGGAACAAGAAT+TGG | 0.398435 | 3.4:+71985048 | MS.gene29054:CDS |
| TTCAGAGTCACCGAAGAACT+TGG | 0.442159 | 3.4:-71984531 | None:intergenic |
| TAGTGGCTGCCCAAGTTCTT+CGG | 0.469327 | 3.4:+71984521 | MS.gene29054:CDS |
| GTCTAGAAAGAGTGGTTCAC+CGG | 0.487455 | 3.4:-71983042 | None:intergenic |
| TCTTCGGTGACTCTGAAGTC+AGG | 0.490374 | 3.4:+71984537 | MS.gene29054:CDS |
| GGTGGGGACATTGTATATTG+TGG | 0.499614 | 3.4:+71984143 | MS.gene29054:CDS |
| AGAATTGGATGGCGAGGAAG+AGG | 0.507801 | 3.4:+71985063 | MS.gene29054:CDS |
| TGAAACAGTTGCAATGATCA+AGG | 0.511525 | 3.4:+71984079 | MS.gene29054:CDS |
| GAAGAGGAAGCAGCTTTAAG+TGG | 0.530262 | 3.4:+71985079 | MS.gene29054:CDS |
| GTGAAAATTGATTTAGCGAG+AGG | 0.538554 | 3.4:-71982782 | None:intergenic |
| GGATGAAACATAAGAGACTC+TGG | 0.539372 | 3.4:-71982695 | None:intergenic |
| ACATCCATGACAGGTTTACC+AGG | 0.541119 | 3.4:-71982716 | None:intergenic |
| CGACCAACTGTACAAGATGA+TGG | 0.541545 | 3.4:+71984122 | MS.gene29054:CDS |
| AATTGCTGTGTCTTTGGAAG+CGG | 0.555636 | 3.4:-71983075 | None:intergenic |
| ATCGTCAAACTTAAAATGCA+AGG | 0.563819 | 3.4:+71984492 | MS.gene29054:CDS |
| CAACTGTACAAGATGATGGT+GGG | 0.564735 | 3.4:+71984126 | MS.gene29054:CDS |
| TTGCTGCATTTACAGGTCAA+AGG | 0.565990 | 3.4:+71985031 | MS.gene29054:intron |
| CCACCATCATCTTGTACAGT+TGG | 0.572483 | 3.4:-71984125 | None:intergenic |
| GAGTCTCTTATGTTTCATCC+TGG | 0.574002 | 3.4:+71982698 | MS.gene29054:CDS |
| GGTAAACCTGTCATGGATGT+TGG | 0.587174 | 3.4:+71982719 | MS.gene29054:CDS |
| TCATCCTGGTAAACCTGTCA+TGG | 0.592000 | 3.4:+71982712 | MS.gene29054:CDS |
| CAAATCGGAAGATGCATCGT+GGG | 0.592355 | 3.4:+71982971 | MS.gene29054:CDS |
| GCTTGAGAGTCTAGAAAGAG+TGG | 0.594156 | 3.4:-71983050 | None:intergenic |
| AACTGTACAAGATGATGGTG+GGG | 0.603309 | 3.4:+71984127 | MS.gene29054:CDS |
| GCGCTACCAACATCCATGAC+AGG | 0.609183 | 3.4:-71982725 | None:intergenic |
| TCAGAGTCACCGAAGAACTT+GGG | 0.610880 | 3.4:-71984530 | None:intergenic |
| AAAATGCAAGGAGCGTGTAG+TGG | 0.619177 | 3.4:+71984504 | MS.gene29054:CDS |
| CCAACTGTACAAGATGATGG+TGG | 0.622834 | 3.4:+71984125 | MS.gene29054:CDS |
| GCATTTACAGGTCAAAGGTG+TGG | 0.632082 | 3.4:+71985036 | MS.gene29054:intron |
| AAGAGACTCTGGATTTGGAG+TGG | 0.639473 | 3.4:-71982684 | None:intergenic |
| GGAGAATTCATAGCGGAACG+AGG | 0.644818 | 3.4:-71982761 | None:intergenic |
| GGAACAAGAATTGGATGGCG+AGG | 0.646815 | 3.4:+71985057 | MS.gene29054:CDS |
| GAGAATTCATAGCGGAACGA+GGG | 0.651131 | 3.4:-71982760 | None:intergenic |
| CCAAATCGGAAGATGCATCG+TGG | 0.660421 | 3.4:+71982970 | MS.gene29054:CDS |
| AGAGTAGAAATCCATAATAG+CGG | 0.670498 | 3.4:-71983018 | None:intergenic |
| GGTGTGGAACAAGAATTGGA+TGG | 0.704531 | 3.4:+71985052 | MS.gene29054:CDS |
| GCTGATGCATTATGTACCTG+AGG | 0.715793 | 3.4:+71984572 | MS.gene29054:CDS |
| AGCGAGAGGAGAATTCATAG+CGG | 0.791927 | 3.4:-71982768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGAAATTTAAGTAAA+AGG | - | chr3.4:71983169-71983188 | None:intergenic | 10.0% |
| !! | ATACAAATTTAAGAAATGAA+AGG | - | chr3.4:71982875-71982894 | None:intergenic | 15.0% |
| !! | ATTTGATAAATATCATTAGT+TGG | - | chr3.4:71983407-71983426 | None:intergenic | 15.0% |
| !! | CTTGTAATTTAATTATTGTT+TGG | - | chr3.4:71983454-71983473 | None:intergenic | 15.0% |
| !! | GTTTCTCAATATAATATAAT+TGG | - | chr3.4:71984995-71985014 | None:intergenic | 15.0% |
| !!! | ATTATGTTTTTTTTATTTGC+AGG | - | chr3.4:71983705-71983724 | None:intergenic | 15.0% |
| !!! | ATTTGTAATATTCTGTTTTT+AGG | - | chr3.4:71983595-71983614 | None:intergenic | 15.0% |
| !!! | TTATGTTTTTTTTATTTGCA+GGG | - | chr3.4:71983704-71983723 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAACAAAAAAATC+AGG | + | chr3.4:71983849-71983868 | MS.gene29054:intron | 15.0% |
| !!! | TTTTTTTTTTTAATTGTTGC+AGG | + | chr3.4:71982906-71982925 | MS.gene29054:intron | 15.0% |
| !! | ATTGGACAATTCATATAAAA+TGG | - | chr3.4:71984977-71984996 | None:intergenic | 20.0% |
| !! | TAATGTTGTACATTATAGAA+TGG | + | chr3.4:71984422-71984441 | MS.gene29054:intron | 20.0% |
| !! | TAGAATGTTAGTAAATTAGT+GGG | - | chr3.4:71983565-71983584 | None:intergenic | 20.0% |
| !! | TAGTTTATGATAGAACATTA+TGG | + | chr3.4:71983221-71983240 | MS.gene29054:intron | 20.0% |
| !! | TGCAAATCTTATAAGTTAAT+TGG | - | chr3.4:71984787-71984806 | None:intergenic | 20.0% |
| !! | TTAGAATGTTAGTAAATTAG+TGG | - | chr3.4:71983566-71983585 | None:intergenic | 20.0% |
| !! | TTGATTACCGTAAATATAAA+TGG | - | chr3.4:71984648-71984667 | None:intergenic | 20.0% |
| !!! | ATTTTTTAAAGAGAAACCTA+TGG | - | chr3.4:71983946-71983965 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTTTATTTGCAG+GGG | - | chr3.4:71983703-71983722 | None:intergenic | 20.0% |
| !!! | TGTATTTGCTTTTTATATTG+TGG | + | chr3.4:71984449-71984468 | MS.gene29054:intron | 20.0% |
| !!! | TTATTTAAAGCAGCATTAAT+AGG | + | chr3.4:71984944-71984963 | MS.gene29054:intron | 20.0% |
| !!! | TTTTAACAAAAAAATCAGGA+GGG | + | chr3.4:71983853-71983872 | MS.gene29054:intron | 20.0% |
| !!! | TTTTTAACAAAAAAATCAGG+AGG | + | chr3.4:71983852-71983871 | MS.gene29054:intron | 20.0% |
| ! | AAACCCAAATAGAAAAAAAG+AGG | - | chr3.4:71984197-71984216 | None:intergenic | 25.0% |
| ! | AAATAGAATAAGAGATTGAG+AGG | + | chr3.4:71983726-71983745 | MS.gene29054:intron | 25.0% |
| ! | AACCCAAATAGAAAAAAAGA+GGG | - | chr3.4:71984196-71984215 | None:intergenic | 25.0% |
| ! | AGAGTATAGATTATTCATTG+AGG | - | chr3.4:71984231-71984250 | None:intergenic | 25.0% |
| ! | ATATAAATGGAAACAGCAAA+TGG | - | chr3.4:71984635-71984654 | None:intergenic | 25.0% |
| ! | TAATCAAATTGATTGGAAAC+TGG | + | chr3.4:71984661-71984680 | MS.gene29054:intron | 25.0% |
| ! | TTCAAGATGTCAAAACTAAA+TGG | + | chr3.4:71984025-71984044 | MS.gene29054:intron | 25.0% |
| ! | TTTAACAAAAAAATCAGGAG+GGG | + | chr3.4:71983854-71983873 | MS.gene29054:intron | 25.0% |
| ! | TTTACGGTAATCAAATTGAT+TGG | + | chr3.4:71984654-71984673 | MS.gene29054:intron | 25.0% |
| !! | AAATCAATTTTCACGATTGA+CGG | + | chr3.4:71982791-71982810 | MS.gene29054:CDS | 25.0% |
| !! | AAGTCTAAATACTTTTCCAT+AGG | + | chr3.4:71983927-71983946 | MS.gene29054:intron | 25.0% |
| !! | AAGTTTGCATTATCATTTTG+TGG | + | chr3.4:71984599-71984618 | MS.gene29054:intron | 25.0% |
| !! | GCTGTTTCCATTTATATTTA+CGG | + | chr3.4:71984638-71984657 | MS.gene29054:intron | 25.0% |
| !! | TTTAGTTTAGTCTCATTTCA+AGG | + | chr3.4:71983136-71983155 | MS.gene29054:intron | 25.0% |
| !!! | ATGGAAAAGTATTTAGACTT+GGG | - | chr3.4:71983927-71983946 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTGACATCTTGA+AGG | - | chr3.4:71984026-71984045 | None:intergenic | 25.0% |
| !!! | TATGGAAAAGTATTTAGACT+TGG | - | chr3.4:71983928-71983947 | None:intergenic | 25.0% |
| AATCAATCGTGTAAGACAAA+TGG | - | chr3.4:71984823-71984842 | None:intergenic | 30.0% | |
| AGAGTAGAAATCCATAATAG+CGG | - | chr3.4:71983021-71983040 | None:intergenic | 30.0% | |
| ATCGTCAAACTTAAAATGCA+AGG | + | chr3.4:71984492-71984511 | MS.gene29054:CDS | 30.0% | |
| ATTATGGATTTCTACTCTTC+CGG | + | chr3.4:71983023-71983042 | MS.gene29054:CDS | 30.0% | |
| CAAATAGAAAAAAAGAGGGA+GGG | - | chr3.4:71984192-71984211 | None:intergenic | 30.0% | |
| GCAATATCAACATAGAAATG+AGG | - | chr3.4:71983116-71983135 | None:intergenic | 30.0% | |
| TAGTCTCATTTCAAGGAATT+TGG | + | chr3.4:71983143-71983162 | MS.gene29054:intron | 30.0% | |
| ! | GATTTCGAGGGTATATTAAA+AGG | + | chr3.4:71984748-71984767 | MS.gene29054:intron | 30.0% |
| ! | TTTTGTCACTGTTACCAAAT+CGG | + | chr3.4:71982956-71982975 | MS.gene29054:CDS | 30.0% |
| !! | CATTCTTAAGTTGATTTCGA+GGG | + | chr3.4:71984736-71984755 | MS.gene29054:intron | 30.0% |
| !!! | CTCCCTCTTTTTTTCTATTT+GGG | + | chr3.4:71984191-71984210 | MS.gene29054:intron | 30.0% |
| !!! | GTATGAGATTTTTCTAGCTT+AGG | + | chr3.4:71983997-71984016 | MS.gene29054:intron | 30.0% |
| AACATAAGAGACTCTGGATT+TGG | - | chr3.4:71982692-71982711 | None:intergenic | 35.0% | |
| AATCAACTTAAGAATGCCAC+AGG | - | chr3.4:71984732-71984751 | None:intergenic | 35.0% | |
| ACAGAATAGAAAGACCAAGT+TGG | + | chr3.4:71984253-71984272 | MS.gene29054:intron | 35.0% | |
| AGATAAAGTTCAACCCAACT+TGG | - | chr3.4:71984270-71984289 | None:intergenic | 35.0% | |
| ATAATAGCGGCAAAGATTTC+AGG | - | chr3.4:71983008-71983027 | None:intergenic | 35.0% | |
| ATCATGAATTGCTGTGTCTT+TGG | - | chr3.4:71983084-71983103 | None:intergenic | 35.0% | |
| ATTTGCAGGGGCAATTAATA+AGG | - | chr3.4:71983691-71983710 | None:intergenic | 35.0% | |
| CAGAATAGAAAGACCAAGTT+GGG | + | chr3.4:71984254-71984273 | MS.gene29054:intron | 35.0% | |
| CCAAATAGAAAAAAAGAGGG+AGG | - | chr3.4:71984193-71984212 | None:intergenic | 35.0% | |
| TACACGTAGTTCATTACAGA+AGG | - | chr3.4:71984704-71984723 | None:intergenic | 35.0% | |
| TAGTATGCACAATGACAGAT+AGG | - | chr3.4:71984879-71984898 | None:intergenic | 35.0% | |
| TGAAACAGTTGCAATGATCA+AGG | + | chr3.4:71984079-71984098 | MS.gene29054:CDS | 35.0% | |
| TGAAATCTTTGCCGCTATTA+TGG | + | chr3.4:71983007-71983026 | MS.gene29054:CDS | 35.0% | |
| ! | GGAATTACTCGTGTTTTCTT+TGG | + | chr3.4:71982927-71982946 | MS.gene29054:intron | 35.0% |
| ! | GTGAAAATTGATTTAGCGAG+AGG | - | chr3.4:71982785-71982804 | None:intergenic | 35.0% |
| ! | TGCAATGATCAAGGAACTTT+TGG | + | chr3.4:71984088-71984107 | MS.gene29054:CDS | 35.0% |
| ! | TTTTAGTGACCCAAGTTCTT+GGG | + | chr3.4:71983973-71983992 | MS.gene29054:intron | 35.0% |
| !! | ACATTGAAGGAGTACTAACT+AGG | + | chr3.4:71983502-71983521 | MS.gene29054:intron | 35.0% |
| !! | AGTAAATTAGTGGGTTGTGT+TGG | - | chr3.4:71983556-71983575 | None:intergenic | 35.0% |
| !! | GCATTCTTAAGTTGATTTCG+AGG | + | chr3.4:71984735-71984754 | MS.gene29054:intron | 35.0% |
| !! | TAATGCAAACTTGTTACCTC+AGG | - | chr3.4:71984591-71984610 | None:intergenic | 35.0% |
| !! | TGTGGTTTTCTCTAGAGATA+CGG | + | chr3.4:71984467-71984486 | MS.gene29054:intron | 35.0% |
| !!! | CCTCCCTCTTTTTTTCTATT+TGG | + | chr3.4:71984190-71984209 | MS.gene29054:intron | 35.0% |
| !!! | TAGTTTTGACATCTTGAAGG+TGG | - | chr3.4:71984023-71984042 | None:intergenic | 35.0% |
| AAAAGTCCTGACCTCAATTC+AGG | + | chr3.4:71983322-71983341 | MS.gene29054:intron | 40.0% | |
| AAACCTTAGTCCACTAAGTG+GGG | - | chr3.4:71983270-71983289 | None:intergenic | 40.0% | |
| AAATACAAAGCCTGACTGGT+GGG | + | chr3.4:71983770-71983789 | MS.gene29054:intron | 40.0% | |
| AAGGAAATACAAAGCCTGAC+TGG | + | chr3.4:71983766-71983785 | MS.gene29054:intron | 40.0% | |
| ACAAGTCTATCGTCACAAGT+AGG | + | chr3.4:71983469-71983488 | MS.gene29054:intron | 40.0% | |
| ACTTAAGAATGCCACAGGAA+AGG | - | chr3.4:71984727-71984746 | None:intergenic | 40.0% | |
| ATAGAAAAAAAGAGGGAGGG+AGG | - | chr3.4:71984189-71984208 | None:intergenic | 40.0% | |
| ATCTCATACTCCCAAGAACT+TGG | - | chr3.4:71983986-71984005 | None:intergenic | 40.0% | |
| ATGCTTACCTGTTTGCATAC+AGG | + | chr3.4:71984049-71984068 | MS.gene29054:intron | 40.0% | |
| CAAACCTTAGTCCACTAAGT+GGG | - | chr3.4:71983271-71983290 | None:intergenic | 40.0% | |
| CGTAGTTCATTACAGAAGGA+CGG | - | chr3.4:71984700-71984719 | None:intergenic | 40.0% | |
| GAATCATCCTGTATGCAAAC+AGG | - | chr3.4:71984059-71984078 | None:intergenic | 40.0% | |
| GAGTCTCTTATGTTTCATCC+TGG | + | chr3.4:71982698-71982717 | MS.gene29054:CDS | 40.0% | |
| GCAAGTTTCCAAGACAATGT+TGG | + | chr3.4:71984387-71984406 | MS.gene29054:intron | 40.0% | |
| GGATGAAACATAAGAGACTC+TGG | - | chr3.4:71982698-71982717 | None:intergenic | 40.0% | |
| GGCTGTAGATTTGAAAGGAA+AGG | + | chr3.4:71983747-71983766 | MS.gene29054:intron | 40.0% | |
| GGGATGGATGATTGATGAAT+GGG | + | chr3.4:71983790-71983809 | MS.gene29054:intron | 40.0% | |
| TCAAACCTTAGTCCACTAAG+TGG | - | chr3.4:71983272-71983291 | None:intergenic | 40.0% | |
| TCTCATACTCCCAAGAACTT+GGG | - | chr3.4:71983985-71984004 | None:intergenic | 40.0% | |
| TGAGAGGCTGTAGATTTGAA+AGG | + | chr3.4:71983742-71983761 | MS.gene29054:intron | 40.0% | |
| TGCCTCGATTCAAAAACCAT+TGG | + | chr3.4:71983886-71983905 | MS.gene29054:intron | 40.0% | |
| TGGGATGGATGATTGATGAA+TGG | + | chr3.4:71983789-71983808 | MS.gene29054:intron | 40.0% | |
| TGTCAACACCAACATTGTCT+TGG | - | chr3.4:71984398-71984417 | None:intergenic | 40.0% | |
| TTAGACTTGGGAGATACAAG+AGG | - | chr3.4:71983915-71983934 | None:intergenic | 40.0% | |
| TTGCTGCATTTACAGGTCAA+AGG | + | chr3.4:71985031-71985050 | MS.gene29054:intron | 40.0% | |
| ! | AACTGTACAAGATGATGGTG+GGG | + | chr3.4:71984127-71984146 | MS.gene29054:CDS | 40.0% |
| ! | AATGGTTTTTGAATCGAGGC+AGG | - | chr3.4:71983887-71983906 | None:intergenic | 40.0% |
| ! | AATTGCTGTGTCTTTGGAAG+CGG | - | chr3.4:71983078-71983097 | None:intergenic | 40.0% |
| ! | ATGGTTTTTGAATCGAGGCA+GGG | - | chr3.4:71983886-71983905 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGGAACAAGAAT+TGG | + | chr3.4:71985048-71985067 | MS.gene29054:CDS | 40.0% |
| ! | CAACTGTACAAGATGATGGT+GGG | + | chr3.4:71984126-71984145 | MS.gene29054:CDS | 40.0% |
| ! | CTTTTAGTGACCCAAGTTCT+TGG | + | chr3.4:71983972-71983991 | MS.gene29054:intron | 40.0% |
| ! | TGCCAATGGTTTTTGAATCG+AGG | - | chr3.4:71983891-71983910 | None:intergenic | 40.0% |
| !! | GTGGTTTTCTCTAGAGATAC+GGG | + | chr3.4:71984468-71984487 | MS.gene29054:intron | 40.0% |
| !! | TGGTTTTCTCTAGAGATACG+GGG | + | chr3.4:71984469-71984488 | MS.gene29054:intron | 40.0% |
| AACTACGTGTACCTTTCCTG+TGG | + | chr3.4:71984713-71984732 | MS.gene29054:intron | 45.0% | |
| AAGAGACTCTGGATTTGGAG+TGG | - | chr3.4:71982687-71982706 | None:intergenic | 45.0% | |
| ACATCCATGACAGGTTTACC+AGG | - | chr3.4:71982719-71982738 | None:intergenic | 45.0% | |
| AGCGAGAGGAGAATTCATAG+CGG | - | chr3.4:71982771-71982790 | None:intergenic | 45.0% | |
| CAAATCGGAAGATGCATCGT+GGG | + | chr3.4:71982971-71982990 | MS.gene29054:CDS | 45.0% | |
| CCACCATCATCTTGTACAGT+TGG | - | chr3.4:71984128-71984147 | None:intergenic | 45.0% | |
| CGACCAACTGTACAAGATGA+TGG | + | chr3.4:71984122-71984141 | MS.gene29054:CDS | 45.0% | |
| GAAATACAAAGCCTGACTGG+TGG | + | chr3.4:71983769-71983788 | MS.gene29054:intron | 45.0% | |
| GAGATACAAGAGGATGCCAA+TGG | - | chr3.4:71983905-71983924 | None:intergenic | 45.0% | |
| GCATTTACAGGTCAAAGGTG+TGG | + | chr3.4:71985036-71985055 | MS.gene29054:intron | 45.0% | |
| GCTGATGCATTATGTACCTG+AGG | + | chr3.4:71984572-71984591 | MS.gene29054:CDS | 45.0% | |
| GCTTGAGAGTCTAGAAAGAG+TGG | - | chr3.4:71983053-71983072 | None:intergenic | 45.0% | |
| GGTAAACCTGTCATGGATGT+TGG | + | chr3.4:71982719-71982738 | MS.gene29054:CDS | 45.0% | |
| GGTGGGGACATTGTATATTG+TGG | + | chr3.4:71984143-71984162 | MS.gene29054:CDS | 45.0% | |
| GGTGTGGAACAAGAATTGGA+TGG | + | chr3.4:71985052-71985071 | MS.gene29054:CDS | 45.0% | |
| GTAAATGCAGCAAGCAGCAT+TGG | - | chr3.4:71985024-71985043 | None:intergenic | 45.0% | |
| GTCTAGAAAGAGTGGTTCAC+CGG | - | chr3.4:71983045-71983064 | None:intergenic | 45.0% | |
| TACAGAAGGACGGTAAGTTG+AGG | - | chr3.4:71984690-71984709 | None:intergenic | 45.0% | |
| TCAGAGTCACCGAAGAACTT+GGG | - | chr3.4:71984533-71984552 | None:intergenic | 45.0% | |
| TCATCCTGGTAAACCTGTCA+TGG | + | chr3.4:71982712-71982731 | MS.gene29054:CDS | 45.0% | |
| TGCACAATGACAGATAGGTC+TGG | - | chr3.4:71984874-71984893 | None:intergenic | 45.0% | |
| TTCAGAGTCACCGAAGAACT+TGG | - | chr3.4:71984534-71984553 | None:intergenic | 45.0% | |
| ! | AAAATGCAAGGAGCGTGTAG+TGG | + | chr3.4:71984504-71984523 | MS.gene29054:CDS | 45.0% |
| ! | ATGCTGCTTGCTGCATTTAC+AGG | + | chr3.4:71985024-71985043 | MS.gene29054:intron | 45.0% |
| ! | CCAACTGTACAAGATGATGG+TGG | + | chr3.4:71984125-71984144 | MS.gene29054:CDS | 45.0% |
| ! | GAGAATTCATAGCGGAACGA+GGG | - | chr3.4:71982763-71982782 | None:intergenic | 45.0% |
| ! | TGGTTTTTGAATCGAGGCAG+GGG | - | chr3.4:71983885-71983904 | None:intergenic | 45.0% |
| !! | GAAGAGGAAGCAGCTTTAAG+TGG | + | chr3.4:71985079-71985098 | MS.gene29054:CDS | 45.0% |
| !!! | AAATTTATCATAATTTTTTT+AGG | + | chr3.4:71983611-71983630 | MS.gene29054:intron | 5.0% |
| AATCATCCATCCCACCAGTC+AGG | - | chr3.4:71983783-71983802 | None:intergenic | 50.0% | |
| AGAATTGGATGGCGAGGAAG+AGG | + | chr3.4:71985063-71985082 | MS.gene29054:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3.4:71982821-71982840 | None:intergenic | 50.0% | |
| AGGCAGCTGAGAGACATTGA+AGG | + | chr3.4:71983489-71983508 | MS.gene29054:intron | 50.0% | |
| CCAAATCGGAAGATGCATCG+TGG | + | chr3.4:71982970-71982989 | MS.gene29054:CDS | 50.0% | |
| CCACGATGCATCTTCCGATT+TGG | - | chr3.4:71982973-71982992 | None:intergenic | 50.0% | |
| CTTAGTCCACTAAGTGGGGT+CGG | - | chr3.4:71983266-71983285 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3.4:71982822-71982841 | None:intergenic | 50.0% | |
| GGAACAAGAATTGGATGGCG+AGG | + | chr3.4:71985057-71985076 | MS.gene29054:CDS | 50.0% | |
| TAGTGGCTGCCCAAGTTCTT+CGG | + | chr3.4:71984521-71984540 | MS.gene29054:CDS | 50.0% | |
| TCCTGACCTCAATTCAGGTG+CGG | + | chr3.4:71983327-71983346 | MS.gene29054:intron | 50.0% | |
| ! | GGAGAATTCATAGCGGAACG+AGG | - | chr3.4:71982764-71982783 | None:intergenic | 50.0% |
| ! | TTCATAGCGGAACGAGGGTT+CGG | - | chr3.4:71982758-71982777 | None:intergenic | 50.0% |
| !! | TCTTCGGTGACTCTGAAGTC+AGG | + | chr3.4:71984537-71984556 | MS.gene29054:CDS | 50.0% |
| ACAAAGCCTGACTGGTGGGA+TGG | + | chr3.4:71983774-71983793 | MS.gene29054:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3.4:71983258-71983277 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.4:71983257-71983276 | MS.gene29054:intron | 55.0% | |
| GCGCTACCAACATCCATGAC+AGG | - | chr3.4:71982728-71982747 | None:intergenic | 55.0% | |
| GGAACGAGGGTTCGGGAAAT+CGG | - | chr3.4:71982750-71982769 | None:intergenic | 55.0% | |
| GGGAGGGAGGAGAGAACTTA+CGG | - | chr3.4:71984176-71984195 | None:intergenic | 55.0% | |
| TCCGCACCTGAATTGAGGTC+AGG | - | chr3.4:71983331-71983350 | None:intergenic | 55.0% | |
| ! | TCATAGCGGAACGAGGGTTC+GGG | - | chr3.4:71982757-71982776 | None:intergenic | 55.0% |
| !! | CGACCCCACTTAGTGGACTA+AGG | + | chr3.4:71983264-71983283 | MS.gene29054:intron | 55.0% |
| AGCCAGGATTGGGGAACTGG+GGG | + | chr3.4:71983350-71983369 | MS.gene29054:intron | 60.0% | |
| ATCCCCCAGTTCCCCAATCC+TGG | - | chr3.4:71983355-71983374 | None:intergenic | 60.0% | |
| CTCAATTCAGGTGCGGAGCC+AGG | + | chr3.4:71983334-71983353 | MS.gene29054:intron | 60.0% | |
| CTGGCTCCGCACCTGAATTG+AGG | - | chr3.4:71983336-71983355 | None:intergenic | 60.0% | |
| GAGCCAGGATTGGGGAACTG+GGG | + | chr3.4:71983349-71983368 | MS.gene29054:intron | 60.0% | |
| GGAGCCAGGATTGGGGAACT+GGG | + | chr3.4:71983348-71983367 | MS.gene29054:intron | 60.0% | |
| TCAGGTGCGGAGCCAGGATT+GGG | + | chr3.4:71983340-71983359 | MS.gene29054:intron | 60.0% | |
| TTCAGGTGCGGAGCCAGGAT+TGG | + | chr3.4:71983339-71983358 | MS.gene29054:intron | 60.0% | |
| CAGGTGCGGAGCCAGGATTG+GGG | + | chr3.4:71983341-71983360 | MS.gene29054:intron | 65.0% | |
| CGGAGCCAGGATTGGGGAAC+TGG | + | chr3.4:71983347-71983366 | MS.gene29054:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71982683 | 71985114 | 71982683 | ID=MS.gene29054 |
| chr3.4 | mRNA | 71982683 | 71985114 | 71982683 | ID=MS.gene29054.t1;Parent=MS.gene29054 |
| chr3.4 | exon | 71982683 | 71982812 | 71982683 | ID=MS.gene29054.t1.exon1;Parent=MS.gene29054.t1 |
| chr3.4 | CDS | 71982683 | 71982812 | 71982683 | ID=cds.MS.gene29054.t1;Parent=MS.gene29054.t1 |
| chr3.4 | exon | 71982928 | 71983103 | 71982928 | ID=MS.gene29054.t1.exon2;Parent=MS.gene29054.t1 |
| chr3.4 | CDS | 71982928 | 71983103 | 71982928 | ID=cds.MS.gene29054.t1;Parent=MS.gene29054.t1 |
| chr3.4 | exon | 71984071 | 71984174 | 71984071 | ID=MS.gene29054.t1.exon3;Parent=MS.gene29054.t1 |
| chr3.4 | CDS | 71984071 | 71984174 | 71984071 | ID=cds.MS.gene29054.t1;Parent=MS.gene29054.t1 |
| chr3.4 | exon | 71984482 | 71984593 | 71984482 | ID=MS.gene29054.t1.exon4;Parent=MS.gene29054.t1 |
| chr3.4 | CDS | 71984482 | 71984593 | 71984482 | ID=cds.MS.gene29054.t1;Parent=MS.gene29054.t1 |
| chr3.4 | exon | 71985046 | 71985114 | 71985046 | ID=MS.gene29054.t1.exon5;Parent=MS.gene29054.t1 |
| chr3.4 | CDS | 71985046 | 71985114 | 71985046 | ID=cds.MS.gene29054.t1;Parent=MS.gene29054.t1 |
| Gene Sequence |
| Protein sequence |
