Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29055.t1 | XP_003601103.1 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 1.30E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29055.t1 | Q9LIG6 | 84.6 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 5.6e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29055.t1 | G7J3M0 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 9.1e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009043 | MS.gene29055 | PPI |
| MS.gene29055 | MS.gene009053 | PPI |
| MS.gene70632 | MS.gene29055 | PPI |
| MS.gene069794 | MS.gene29055 | PPI |
| MS.gene29055 | MS.gene61049 | PPI |
| MS.gene022304 | MS.gene29055 | PPI |
| MS.gene25969 | MS.gene29055 | PPI |
| MS.gene038497 | MS.gene29055 | PPI |
| MS.gene83301 | MS.gene29055 | PPI |
| MS.gene29363 | MS.gene29055 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29055.t1 | MTR_3g073070 | 98.545 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 0.0 | 562 |
| MS.gene29055.t1 | MTR_3g073070 | 95.785 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 0.0 | 521 |
| MS.gene29055.t1 | MTR_1g069215 | 93.141 | 277 | 17 | 1 | 1 | 275 | 1 | 277 | 3.20e-159 | 444 |
| MS.gene29055.t1 | MTR_2g005900 | 41.053 | 95 | 50 | 3 | 173 | 264 | 58 | 149 | 4.67e-12 | 64.3 |
| MS.gene29055.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 5.59e-12 | 63.9 |
| MS.gene29055.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 1.08e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29055.t1 | AT3G20970 | 84.615 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 1.17e-132 | 377 |
| MS.gene29055.t1 | AT1G51390 | 81.429 | 210 | 38 | 1 | 57 | 266 | 59 | 267 | 1.29e-126 | 361 |
| MS.gene29055.t1 | AT3G20970 | 84.768 | 151 | 23 | 0 | 66 | 216 | 72 | 222 | 2.30e-93 | 275 |
| MS.gene29055.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 1.30e-12 | 65.5 |
| MS.gene29055.t1 | AT4G25910 | 47.761 | 67 | 33 | 1 | 198 | 264 | 96 | 160 | 2.03e-12 | 65.9 |
| MS.gene29055.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 3.09e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATCAAGGAACTTT+TGG | 0.209765 | 3.2:+65892289 | MS.gene29055:CDS |
| TGAAATCTTTGCCGCTATTA+TGG | 0.218248 | 3.2:+65891208 | MS.gene29055:CDS |
| CTCCTTTGTCCGGTGGAAAA+TGG | 0.263576 | 3.2:-65890839 | None:intergenic |
| TACAAATTGTTCTCGTTGCC+TGG | 0.300775 | 3.2:+65890745 | MS.gene29055:CDS |
| CCACGATGCATCTTCCGATT+TGG | 0.310465 | 3.2:-65891171 | None:intergenic |
| TTCATAGCGGAACGAGGGTT+CGG | 0.314773 | 3.2:-65890956 | None:intergenic |
| ATAATAGCGGCAAAGATTTC+AGG | 0.329502 | 3.2:-65891206 | None:intergenic |
| ATCATGAATTGCTGTGTCTT+TGG | 0.335385 | 3.2:-65891282 | None:intergenic |
| ATTATGGATTTCTACTCTTC+CGG | 0.349184 | 3.2:+65891224 | MS.gene29055:CDS |
| GTCGTAATCGTCTTCCTAAT+CGG | 0.363079 | 3.2:-65890673 | None:intergenic |
| AACATAAGAGACTCTGGATT+TGG | 0.370612 | 3.2:-65890890 | None:intergenic |
| GATTTGGAGTGGACTGTGTT+TGG | 0.376256 | 3.2:-65890874 | None:intergenic |
| TCATAGCGGAACGAGGGTTC+GGG | 0.382077 | 3.2:-65890955 | None:intergenic |
| GGAACGAGGGTTCGGGAAAT+CGG | 0.395541 | 3.2:-65890948 | None:intergenic |
| GTGATTAGTCTCTGGTTTGA+GGG | 0.396383 | 3.2:-65890711 | None:intergenic |
| CAAAGGTGTGGAACAAGAAT+TGG | 0.398435 | 3.2:+65893249 | MS.gene29055:CDS |
| TGAGGCGGAGGAAGAGAAAA+AGG | 0.403424 | 3.2:-65890804 | None:intergenic |
| TGTGATTAGTCTCTGGTTTG+AGG | 0.424340 | 3.2:-65890712 | None:intergenic |
| TTCAGAGTCACCGAAGAACT+TGG | 0.442159 | 3.2:-65892732 | None:intergenic |
| GTGAATAATGTCGGTGGTGA+GGG | 0.452534 | 3.2:+65890640 | None:intergenic |
| AGATTATTGTGATTAGTCTC+TGG | 0.463457 | 3.2:-65890719 | None:intergenic |
| TAGTGGCTGCCCAAGTTCTT+CGG | 0.469327 | 3.2:+65892722 | MS.gene29055:CDS |
| GTCTAGAAAGAGTGGTTCAC+CGG | 0.487455 | 3.2:-65891243 | None:intergenic |
| TCTTCGGTGACTCTGAAGTC+AGG | 0.490374 | 3.2:+65892738 | MS.gene29055:CDS |
| GAAACGACGGTGTTGTGCCC+AGG | 0.492397 | 3.2:-65890763 | None:intergenic |
| GGTGGGGACATTGTATATTG+TGG | 0.499614 | 3.2:+65892344 | MS.gene29055:CDS |
| AGAAGGAAATGGTGAGGCGG+AGG | 0.506688 | 3.2:-65890816 | None:intergenic |
| AGAATTGGATGGCGAGGAAG+AGG | 0.507801 | 3.2:+65893264 | MS.gene29055:CDS |
| TGAAACAGTTGCAATGATCA+AGG | 0.511525 | 3.2:+65892280 | MS.gene29055:CDS |
| GTGGAAAATGGAGAAGGAAA+TGG | 0.515300 | 3.2:-65890827 | None:intergenic |
| AAACATAGTCCTCCTTTGTC+CGG | 0.524701 | 3.2:-65890849 | None:intergenic |
| GAAGAGGAAGCAGCTTTAAG+TGG | 0.530262 | 3.2:+65893280 | MS.gene29055:CDS |
| GTGAAAATTGATTTAGCGAG+AGG | 0.538554 | 3.2:-65890983 | None:intergenic |
| GGATGAAACATAAGAGACTC+TGG | 0.539372 | 3.2:-65890896 | None:intergenic |
| ACAAATTGTTCTCGTTGCCT+GGG | 0.539498 | 3.2:+65890746 | MS.gene29055:CDS |
| ACATCCATGACAGGTTTACC+AGG | 0.541119 | 3.2:-65890917 | None:intergenic |
| CGACCAACTGTACAAGATGA+TGG | 0.541545 | 3.2:+65892323 | MS.gene29055:CDS |
| AATTGCTGTGTCTTTGGAAG+CGG | 0.555636 | 3.2:-65891276 | None:intergenic |
| CGTGAATAATGTCGGTGGTG+AGG | 0.563248 | 3.2:+65890639 | None:intergenic |
| ATCGTCAAACTTAAAATGCA+AGG | 0.563819 | 3.2:+65892693 | MS.gene29055:CDS |
| CAACTGTACAAGATGATGGT+GGG | 0.564735 | 3.2:+65892327 | MS.gene29055:CDS |
| TTGCTGCATTTACAGGTCAA+AGG | 0.565990 | 3.2:+65893232 | MS.gene29055:intron |
| CCACCATCATCTTGTACAGT+TGG | 0.572483 | 3.2:-65892326 | None:intergenic |
| GAGTCTCTTATGTTTCATCC+TGG | 0.574002 | 3.2:+65890899 | MS.gene29055:CDS |
| GGTAAACCTGTCATGGATGT+TGG | 0.587174 | 3.2:+65890920 | MS.gene29055:CDS |
| TCATCCTGGTAAACCTGTCA+TGG | 0.592000 | 3.2:+65890913 | MS.gene29055:CDS |
| CAAATCGGAAGATGCATCGT+GGG | 0.592355 | 3.2:+65891172 | MS.gene29055:CDS |
| GCTTGAGAGTCTAGAAAGAG+TGG | 0.594156 | 3.2:-65891251 | None:intergenic |
| AACTGTACAAGATGATGGTG+GGG | 0.603309 | 3.2:+65892328 | MS.gene29055:CDS |
| GCGCTACCAACATCCATGAC+AGG | 0.609183 | 3.2:-65890926 | None:intergenic |
| TCAGAGTCACCGAAGAACTT+GGG | 0.610880 | 3.2:-65892731 | None:intergenic |
| TGAATAATGTCGGTGGTGAG+GGG | 0.610912 | 3.2:+65890641 | None:intergenic |
| TGTCCGGTGGAAAATGGAGA+AGG | 0.612110 | 3.2:-65890833 | None:intergenic |
| CATAGTCCTCCTTTGTCCGG+TGG | 0.613263 | 3.2:-65890846 | None:intergenic |
| AAAATGCAAGGAGCGTGTAG+TGG | 0.619177 | 3.2:+65892705 | MS.gene29055:CDS |
| CCAACTGTACAAGATGATGG+TGG | 0.622834 | 3.2:+65892326 | MS.gene29055:CDS |
| GCATTTACAGGTCAAAGGTG+TGG | 0.632082 | 3.2:+65893237 | MS.gene29055:intron |
| TGGAGAAGGAAATGGTGAGG+CGG | 0.634856 | 3.2:-65890819 | None:intergenic |
| AAGAGACTCTGGATTTGGAG+TGG | 0.639473 | 3.2:-65890885 | None:intergenic |
| GGAGAATTCATAGCGGAACG+AGG | 0.644818 | 3.2:-65890962 | None:intergenic |
| GGAACAAGAATTGGATGGCG+AGG | 0.646815 | 3.2:+65893258 | MS.gene29055:CDS |
| GAGAATTCATAGCGGAACGA+GGG | 0.651131 | 3.2:-65890961 | None:intergenic |
| CCAAATCGGAAGATGCATCG+TGG | 0.660421 | 3.2:+65891171 | MS.gene29055:CDS |
| TTAGGAAGACGATTACGACT+AGG | 0.667897 | 3.2:+65890677 | MS.gene29055:CDS |
| AGAGTAGAAATCCATAATAG+CGG | 0.670498 | 3.2:-65891219 | None:intergenic |
| AAATGGAGAAGGAAATGGTG+AGG | 0.682646 | 3.2:-65890822 | None:intergenic |
| CAGATCGTGAATAATGTCGG+TGG | 0.693370 | 3.2:+65890634 | None:intergenic |
| GGTGTGGAACAAGAATTGGA+TGG | 0.704531 | 3.2:+65893253 | MS.gene29055:CDS |
| GCTGATGCATTATGTACCTG+AGG | 0.715793 | 3.2:+65892773 | MS.gene29055:CDS |
| TGGTTGCGAGGTTGAAACGA+CGG | 0.733707 | 3.2:-65890776 | None:intergenic |
| AGCGAGAGGAGAATTCATAG+CGG | 0.791927 | 3.2:-65890969 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGAAATTTAAGTAAA+AGG | - | chr3.2:65891370-65891389 | None:intergenic | 10.0% |
| !! | ATACAAATTTAAGAAATGAA+AGG | - | chr3.2:65891076-65891095 | None:intergenic | 15.0% |
| !! | ATTTGATAAATATCATTAGT+TGG | - | chr3.2:65891608-65891627 | None:intergenic | 15.0% |
| !! | CTTGTAATTTAATTATTGTT+TGG | - | chr3.2:65891655-65891674 | None:intergenic | 15.0% |
| !! | GTTTCTCAATATAATATAAT+TGG | - | chr3.2:65893196-65893215 | None:intergenic | 15.0% |
| !!! | ATTATGTTTTTTTTATTTGC+AGG | - | chr3.2:65891906-65891925 | None:intergenic | 15.0% |
| !!! | ATTTGTAATATTCTGTTTTT+AGG | - | chr3.2:65891796-65891815 | None:intergenic | 15.0% |
| !!! | TTATGTTTTTTTTATTTGCA+GGG | - | chr3.2:65891905-65891924 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAACAAAAAAATC+AGG | + | chr3.2:65892050-65892069 | MS.gene29055:intron | 15.0% |
| !!! | TTTTTTTTTTTAATTGTTGC+AGG | + | chr3.2:65891107-65891126 | MS.gene29055:intron | 15.0% |
| !! | ATTGGACAATTCATATAAAA+TGG | - | chr3.2:65893178-65893197 | None:intergenic | 20.0% |
| !! | TAATGTTGTACATTATAGAA+TGG | + | chr3.2:65892623-65892642 | MS.gene29055:intron | 20.0% |
| !! | TAGAATGTTAGTAAATTAGT+GGG | - | chr3.2:65891766-65891785 | None:intergenic | 20.0% |
| !! | TAGTTTATGATAGAACATTA+TGG | + | chr3.2:65891422-65891441 | MS.gene29055:intron | 20.0% |
| !! | TGCAAATCTTATAAGTTAAT+TGG | - | chr3.2:65892988-65893007 | None:intergenic | 20.0% |
| !! | TTAGAATGTTAGTAAATTAG+TGG | - | chr3.2:65891767-65891786 | None:intergenic | 20.0% |
| !! | TTGATTACCGTAAATATAAA+TGG | - | chr3.2:65892849-65892868 | None:intergenic | 20.0% |
| !!! | ATTTTTTAAAGAGAAACCTA+TGG | - | chr3.2:65892147-65892166 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTTTATTTGCAG+GGG | - | chr3.2:65891904-65891923 | None:intergenic | 20.0% |
| !!! | TGTATTTGCTTTTTATATTG+TGG | + | chr3.2:65892650-65892669 | MS.gene29055:intron | 20.0% |
| !!! | TTATTTAAAGCAGCATTAAT+AGG | + | chr3.2:65893145-65893164 | MS.gene29055:intron | 20.0% |
| !!! | TTTTAACAAAAAAATCAGGA+GGG | + | chr3.2:65892054-65892073 | MS.gene29055:intron | 20.0% |
| !!! | TTTTTAACAAAAAAATCAGG+AGG | + | chr3.2:65892053-65892072 | MS.gene29055:intron | 20.0% |
| ! | AAACCCAAATAGAAAAAAAG+AGG | - | chr3.2:65892398-65892417 | None:intergenic | 25.0% |
| ! | AAATAGAATAAGAGATTGAG+AGG | + | chr3.2:65891927-65891946 | MS.gene29055:intron | 25.0% |
| ! | AACCCAAATAGAAAAAAAGA+GGG | - | chr3.2:65892397-65892416 | None:intergenic | 25.0% |
| ! | AGAGTATAGATTATTCATTG+AGG | - | chr3.2:65892432-65892451 | None:intergenic | 25.0% |
| ! | ATATAAATGGAAACAGCAAA+TGG | - | chr3.2:65892836-65892855 | None:intergenic | 25.0% |
| ! | TAATCAAATTGATTGGAAAC+TGG | + | chr3.2:65892862-65892881 | MS.gene29055:intron | 25.0% |
| ! | TTCAAGATGTCAAAACTAAA+TGG | + | chr3.2:65892226-65892245 | MS.gene29055:intron | 25.0% |
| ! | TTTAACAAAAAAATCAGGAG+GGG | + | chr3.2:65892055-65892074 | MS.gene29055:intron | 25.0% |
| ! | TTTACGGTAATCAAATTGAT+TGG | + | chr3.2:65892855-65892874 | MS.gene29055:intron | 25.0% |
| !! | AAATCAATTTTCACGATTGA+CGG | + | chr3.2:65890992-65891011 | MS.gene29055:CDS | 25.0% |
| !! | AAGTCTAAATACTTTTCCAT+AGG | + | chr3.2:65892128-65892147 | MS.gene29055:intron | 25.0% |
| !! | AAGTTTGCATTATCATTTTG+TGG | + | chr3.2:65892800-65892819 | MS.gene29055:intron | 25.0% |
| !! | GCTGTTTCCATTTATATTTA+CGG | + | chr3.2:65892839-65892858 | MS.gene29055:intron | 25.0% |
| !! | TTTAGTTTAGTCTCATTTCA+AGG | + | chr3.2:65891337-65891356 | MS.gene29055:intron | 25.0% |
| !!! | ATGGAAAAGTATTTAGACTT+GGG | - | chr3.2:65892128-65892147 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTGACATCTTGA+AGG | - | chr3.2:65892227-65892246 | None:intergenic | 25.0% |
| !!! | TATGGAAAAGTATTTAGACT+TGG | - | chr3.2:65892129-65892148 | None:intergenic | 25.0% |
| AATCAATCGTGTAAGACAAA+TGG | - | chr3.2:65893024-65893043 | None:intergenic | 30.0% | |
| AGAGTAGAAATCCATAATAG+CGG | - | chr3.2:65891222-65891241 | None:intergenic | 30.0% | |
| ATCGTCAAACTTAAAATGCA+AGG | + | chr3.2:65892693-65892712 | MS.gene29055:CDS | 30.0% | |
| ATTATGGATTTCTACTCTTC+CGG | + | chr3.2:65891224-65891243 | MS.gene29055:CDS | 30.0% | |
| CAAATAGAAAAAAAGAGGGA+GGG | - | chr3.2:65892393-65892412 | None:intergenic | 30.0% | |
| GCAATATCAACATAGAAATG+AGG | - | chr3.2:65891317-65891336 | None:intergenic | 30.0% | |
| TAGTCTCATTTCAAGGAATT+TGG | + | chr3.2:65891344-65891363 | MS.gene29055:intron | 30.0% | |
| ! | GATTTCGAGGGTATATTAAA+AGG | + | chr3.2:65892949-65892968 | MS.gene29055:intron | 30.0% |
| ! | TTTTGTCACTGTTACCAAAT+CGG | + | chr3.2:65891157-65891176 | MS.gene29055:CDS | 30.0% |
| !! | AGATTATTGTGATTAGTCTC+TGG | - | chr3.2:65890722-65890741 | None:intergenic | 30.0% |
| !! | CATTCTTAAGTTGATTTCGA+GGG | + | chr3.2:65892937-65892956 | MS.gene29055:intron | 30.0% |
| !!! | CTCCCTCTTTTTTTCTATTT+GGG | + | chr3.2:65892392-65892411 | MS.gene29055:intron | 30.0% |
| !!! | GTATGAGATTTTTCTAGCTT+AGG | + | chr3.2:65892198-65892217 | MS.gene29055:intron | 30.0% |
| AACATAAGAGACTCTGGATT+TGG | - | chr3.2:65890893-65890912 | None:intergenic | 35.0% | |
| AATCAACTTAAGAATGCCAC+AGG | - | chr3.2:65892933-65892952 | None:intergenic | 35.0% | |
| ACAGAATAGAAAGACCAAGT+TGG | + | chr3.2:65892454-65892473 | MS.gene29055:intron | 35.0% | |
| AGATAAAGTTCAACCCAACT+TGG | - | chr3.2:65892471-65892490 | None:intergenic | 35.0% | |
| ATAATAGCGGCAAAGATTTC+AGG | - | chr3.2:65891209-65891228 | None:intergenic | 35.0% | |
| ATCATGAATTGCTGTGTCTT+TGG | - | chr3.2:65891285-65891304 | None:intergenic | 35.0% | |
| ATTTGCAGGGGCAATTAATA+AGG | - | chr3.2:65891892-65891911 | None:intergenic | 35.0% | |
| CAGAATAGAAAGACCAAGTT+GGG | + | chr3.2:65892455-65892474 | MS.gene29055:intron | 35.0% | |
| CCAAATAGAAAAAAAGAGGG+AGG | - | chr3.2:65892394-65892413 | None:intergenic | 35.0% | |
| TACACGTAGTTCATTACAGA+AGG | - | chr3.2:65892905-65892924 | None:intergenic | 35.0% | |
| TAGTATGCACAATGACAGAT+AGG | - | chr3.2:65893080-65893099 | None:intergenic | 35.0% | |
| TGAAACAGTTGCAATGATCA+AGG | + | chr3.2:65892280-65892299 | MS.gene29055:CDS | 35.0% | |
| TGAAATCTTTGCCGCTATTA+TGG | + | chr3.2:65891208-65891227 | MS.gene29055:CDS | 35.0% | |
| ! | GGAATTACTCGTGTTTTCTT+TGG | + | chr3.2:65891128-65891147 | MS.gene29055:intron | 35.0% |
| ! | GTGAAAATTGATTTAGCGAG+AGG | - | chr3.2:65890986-65891005 | None:intergenic | 35.0% |
| ! | TGCAATGATCAAGGAACTTT+TGG | + | chr3.2:65892289-65892308 | MS.gene29055:CDS | 35.0% |
| ! | TTTTAGTGACCCAAGTTCTT+GGG | + | chr3.2:65892174-65892193 | MS.gene29055:intron | 35.0% |
| !! | ACATTGAAGGAGTACTAACT+AGG | + | chr3.2:65891703-65891722 | MS.gene29055:intron | 35.0% |
| !! | AGTAAATTAGTGGGTTGTGT+TGG | - | chr3.2:65891757-65891776 | None:intergenic | 35.0% |
| !! | GCATTCTTAAGTTGATTTCG+AGG | + | chr3.2:65892936-65892955 | MS.gene29055:intron | 35.0% |
| !! | TAATGCAAACTTGTTACCTC+AGG | - | chr3.2:65892792-65892811 | None:intergenic | 35.0% |
| !! | TGTGGTTTTCTCTAGAGATA+CGG | + | chr3.2:65892668-65892687 | MS.gene29055:intron | 35.0% |
| !!! | CCTCCCTCTTTTTTTCTATT+TGG | + | chr3.2:65892391-65892410 | MS.gene29055:intron | 35.0% |
| !!! | TAGTTTTGACATCTTGAAGG+TGG | - | chr3.2:65892224-65892243 | None:intergenic | 35.0% |
| AAAAGTCCTGACCTCAATTC+AGG | + | chr3.2:65891523-65891542 | MS.gene29055:intron | 40.0% | |
| AAACATAGTCCTCCTTTGTC+CGG | - | chr3.2:65890852-65890871 | None:intergenic | 40.0% | |
| AAACCTTAGTCCACTAAGTG+GGG | - | chr3.2:65891471-65891490 | None:intergenic | 40.0% | |
| AAATACAAAGCCTGACTGGT+GGG | + | chr3.2:65891971-65891990 | MS.gene29055:intron | 40.0% | |
| AAATGGAGAAGGAAATGGTG+AGG | - | chr3.2:65890825-65890844 | None:intergenic | 40.0% | |
| AAGGAAATACAAAGCCTGAC+TGG | + | chr3.2:65891967-65891986 | MS.gene29055:intron | 40.0% | |
| ACAAATTGTTCTCGTTGCCT+GGG | + | chr3.2:65890746-65890765 | MS.gene29055:CDS | 40.0% | |
| ACAAGTCTATCGTCACAAGT+AGG | + | chr3.2:65891670-65891689 | MS.gene29055:intron | 40.0% | |
| ACTTAAGAATGCCACAGGAA+AGG | - | chr3.2:65892928-65892947 | None:intergenic | 40.0% | |
| ATAGAAAAAAAGAGGGAGGG+AGG | - | chr3.2:65892390-65892409 | None:intergenic | 40.0% | |
| ATCTCATACTCCCAAGAACT+TGG | - | chr3.2:65892187-65892206 | None:intergenic | 40.0% | |
| ATGCTTACCTGTTTGCATAC+AGG | + | chr3.2:65892250-65892269 | MS.gene29055:intron | 40.0% | |
| CAAACCTTAGTCCACTAAGT+GGG | - | chr3.2:65891472-65891491 | None:intergenic | 40.0% | |
| CGTAGTTCATTACAGAAGGA+CGG | - | chr3.2:65892901-65892920 | None:intergenic | 40.0% | |
| GAATCATCCTGTATGCAAAC+AGG | - | chr3.2:65892260-65892279 | None:intergenic | 40.0% | |
| GAGTCTCTTATGTTTCATCC+TGG | + | chr3.2:65890899-65890918 | MS.gene29055:CDS | 40.0% | |
| GCAAGTTTCCAAGACAATGT+TGG | + | chr3.2:65892588-65892607 | MS.gene29055:intron | 40.0% | |
| GGATGAAACATAAGAGACTC+TGG | - | chr3.2:65890899-65890918 | None:intergenic | 40.0% | |
| GGCTGTAGATTTGAAAGGAA+AGG | + | chr3.2:65891948-65891967 | MS.gene29055:intron | 40.0% | |
| GGGATGGATGATTGATGAAT+GGG | + | chr3.2:65891991-65892010 | MS.gene29055:intron | 40.0% | |
| GTCGTAATCGTCTTCCTAAT+CGG | - | chr3.2:65890676-65890695 | None:intergenic | 40.0% | |
| GTGGAAAATGGAGAAGGAAA+TGG | - | chr3.2:65890830-65890849 | None:intergenic | 40.0% | |
| TACAAATTGTTCTCGTTGCC+TGG | + | chr3.2:65890745-65890764 | MS.gene29055:CDS | 40.0% | |
| TCAAACCTTAGTCCACTAAG+TGG | - | chr3.2:65891473-65891492 | None:intergenic | 40.0% | |
| TCTCATACTCCCAAGAACTT+GGG | - | chr3.2:65892186-65892205 | None:intergenic | 40.0% | |
| TGAGAGGCTGTAGATTTGAA+AGG | + | chr3.2:65891943-65891962 | MS.gene29055:intron | 40.0% | |
| TGCCTCGATTCAAAAACCAT+TGG | + | chr3.2:65892087-65892106 | MS.gene29055:intron | 40.0% | |
| TGGGATGGATGATTGATGAA+TGG | + | chr3.2:65891990-65892009 | MS.gene29055:intron | 40.0% | |
| TGTCAACACCAACATTGTCT+TGG | - | chr3.2:65892599-65892618 | None:intergenic | 40.0% | |
| TTAGACTTGGGAGATACAAG+AGG | - | chr3.2:65892116-65892135 | None:intergenic | 40.0% | |
| TTAGGAAGACGATTACGACT+AGG | + | chr3.2:65890677-65890696 | MS.gene29055:CDS | 40.0% | |
| TTGCTGCATTTACAGGTCAA+AGG | + | chr3.2:65893232-65893251 | MS.gene29055:intron | 40.0% | |
| ! | AACTGTACAAGATGATGGTG+GGG | + | chr3.2:65892328-65892347 | MS.gene29055:CDS | 40.0% |
| ! | AATGGTTTTTGAATCGAGGC+AGG | - | chr3.2:65892088-65892107 | None:intergenic | 40.0% |
| ! | AATTGCTGTGTCTTTGGAAG+CGG | - | chr3.2:65891279-65891298 | None:intergenic | 40.0% |
| ! | ATGGTTTTTGAATCGAGGCA+GGG | - | chr3.2:65892087-65892106 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGGAACAAGAAT+TGG | + | chr3.2:65893249-65893268 | MS.gene29055:CDS | 40.0% |
| ! | CAACTGTACAAGATGATGGT+GGG | + | chr3.2:65892327-65892346 | MS.gene29055:CDS | 40.0% |
| ! | CTTTTAGTGACCCAAGTTCT+TGG | + | chr3.2:65892173-65892192 | MS.gene29055:intron | 40.0% |
| ! | TGCCAATGGTTTTTGAATCG+AGG | - | chr3.2:65892092-65892111 | None:intergenic | 40.0% |
| ! | TTTCCTTCTCCATTTTCCAC+CGG | + | chr3.2:65890830-65890849 | MS.gene29055:CDS | 40.0% |
| !! | AGGAAGAGAAAAAGGCATTG+TGG | - | chr3.2:65890799-65890818 | None:intergenic | 40.0% |
| !! | GTGATTAGTCTCTGGTTTGA+GGG | - | chr3.2:65890714-65890733 | None:intergenic | 40.0% |
| !! | GTGGTTTTCTCTAGAGATAC+GGG | + | chr3.2:65892669-65892688 | MS.gene29055:intron | 40.0% |
| !! | TGGTTTTCTCTAGAGATACG+GGG | + | chr3.2:65892670-65892689 | MS.gene29055:intron | 40.0% |
| !! | TGTGATTAGTCTCTGGTTTG+AGG | - | chr3.2:65890715-65890734 | None:intergenic | 40.0% |
| AACTACGTGTACCTTTCCTG+TGG | + | chr3.2:65892914-65892933 | MS.gene29055:intron | 45.0% | |
| AAGAGACTCTGGATTTGGAG+TGG | - | chr3.2:65890888-65890907 | None:intergenic | 45.0% | |
| ACATCCATGACAGGTTTACC+AGG | - | chr3.2:65890920-65890939 | None:intergenic | 45.0% | |
| AGCGAGAGGAGAATTCATAG+CGG | - | chr3.2:65890972-65890991 | None:intergenic | 45.0% | |
| CAAATCGGAAGATGCATCGT+GGG | + | chr3.2:65891172-65891191 | MS.gene29055:CDS | 45.0% | |
| CCACCATCATCTTGTACAGT+TGG | - | chr3.2:65892329-65892348 | None:intergenic | 45.0% | |
| CGACCAACTGTACAAGATGA+TGG | + | chr3.2:65892323-65892342 | MS.gene29055:CDS | 45.0% | |
| GAAATACAAAGCCTGACTGG+TGG | + | chr3.2:65891970-65891989 | MS.gene29055:intron | 45.0% | |
| GAGATACAAGAGGATGCCAA+TGG | - | chr3.2:65892106-65892125 | None:intergenic | 45.0% | |
| GCATTTACAGGTCAAAGGTG+TGG | + | chr3.2:65893237-65893256 | MS.gene29055:intron | 45.0% | |
| GCTGATGCATTATGTACCTG+AGG | + | chr3.2:65892773-65892792 | MS.gene29055:CDS | 45.0% | |
| GCTTGAGAGTCTAGAAAGAG+TGG | - | chr3.2:65891254-65891273 | None:intergenic | 45.0% | |
| GGTAAACCTGTCATGGATGT+TGG | + | chr3.2:65890920-65890939 | MS.gene29055:CDS | 45.0% | |
| GGTGGGGACATTGTATATTG+TGG | + | chr3.2:65892344-65892363 | MS.gene29055:CDS | 45.0% | |
| GGTGTGGAACAAGAATTGGA+TGG | + | chr3.2:65893253-65893272 | MS.gene29055:CDS | 45.0% | |
| GTAAATGCAGCAAGCAGCAT+TGG | - | chr3.2:65893225-65893244 | None:intergenic | 45.0% | |
| GTCTAGAAAGAGTGGTTCAC+CGG | - | chr3.2:65891246-65891265 | None:intergenic | 45.0% | |
| TACAGAAGGACGGTAAGTTG+AGG | - | chr3.2:65892891-65892910 | None:intergenic | 45.0% | |
| TCAGAGTCACCGAAGAACTT+GGG | - | chr3.2:65892734-65892753 | None:intergenic | 45.0% | |
| TCATCCTGGTAAACCTGTCA+TGG | + | chr3.2:65890913-65890932 | MS.gene29055:CDS | 45.0% | |
| TGCACAATGACAGATAGGTC+TGG | - | chr3.2:65893075-65893094 | None:intergenic | 45.0% | |
| TTCAGAGTCACCGAAGAACT+TGG | - | chr3.2:65892735-65892754 | None:intergenic | 45.0% | |
| ! | AAAATGCAAGGAGCGTGTAG+TGG | + | chr3.2:65892705-65892724 | MS.gene29055:CDS | 45.0% |
| ! | AGGGGTAGTGTTTTCCGATT+AGG | + | chr3.2:65890659-65890678 | MS.gene29055:CDS | 45.0% |
| ! | ATGCTGCTTGCTGCATTTAC+AGG | + | chr3.2:65893225-65893244 | MS.gene29055:intron | 45.0% |
| ! | CCAACTGTACAAGATGATGG+TGG | + | chr3.2:65892326-65892345 | MS.gene29055:CDS | 45.0% |
| ! | GAGAATTCATAGCGGAACGA+GGG | - | chr3.2:65890964-65890983 | None:intergenic | 45.0% |
| ! | TGGTTTTTGAATCGAGGCAG+GGG | - | chr3.2:65892086-65892105 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTGTGGTTGCG+AGG | - | chr3.2:65890791-65890810 | None:intergenic | 45.0% |
| !! | GAAGAGGAAGCAGCTTTAAG+TGG | + | chr3.2:65893280-65893299 | MS.gene29055:CDS | 45.0% |
| !! | GATTTGGAGTGGACTGTGTT+TGG | - | chr3.2:65890877-65890896 | None:intergenic | 45.0% |
| !!! | AAATTTATCATAATTTTTTT+AGG | + | chr3.2:65891812-65891831 | MS.gene29055:intron | 5.0% |
| AATCATCCATCCCACCAGTC+AGG | - | chr3.2:65891984-65892003 | None:intergenic | 50.0% | |
| AGAATTGGATGGCGAGGAAG+AGG | + | chr3.2:65893264-65893283 | MS.gene29055:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3.2:65891022-65891041 | None:intergenic | 50.0% | |
| AGGCAGCTGAGAGACATTGA+AGG | + | chr3.2:65891690-65891709 | MS.gene29055:intron | 50.0% | |
| CCAAATCGGAAGATGCATCG+TGG | + | chr3.2:65891171-65891190 | MS.gene29055:CDS | 50.0% | |
| CCACGATGCATCTTCCGATT+TGG | - | chr3.2:65891174-65891193 | None:intergenic | 50.0% | |
| CTCCTTTGTCCGGTGGAAAA+TGG | - | chr3.2:65890842-65890861 | None:intergenic | 50.0% | |
| CTTAGTCCACTAAGTGGGGT+CGG | - | chr3.2:65891467-65891486 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3.2:65891023-65891042 | None:intergenic | 50.0% | |
| GGAACAAGAATTGGATGGCG+AGG | + | chr3.2:65893258-65893277 | MS.gene29055:CDS | 50.0% | |
| TAGTGGCTGCCCAAGTTCTT+CGG | + | chr3.2:65892722-65892741 | MS.gene29055:CDS | 50.0% | |
| TCCTGACCTCAATTCAGGTG+CGG | + | chr3.2:65891528-65891547 | MS.gene29055:intron | 50.0% | |
| TGAGGCGGAGGAAGAGAAAA+AGG | - | chr3.2:65890807-65890826 | None:intergenic | 50.0% | |
| TGGAGAAGGAAATGGTGAGG+CGG | - | chr3.2:65890822-65890841 | None:intergenic | 50.0% | |
| TGGTTGCGAGGTTGAAACGA+CGG | - | chr3.2:65890779-65890798 | None:intergenic | 50.0% | |
| TGTCCGGTGGAAAATGGAGA+AGG | - | chr3.2:65890836-65890855 | None:intergenic | 50.0% | |
| ! | CATTTTCCACCGGACAAAGG+AGG | + | chr3.2:65890840-65890859 | MS.gene29055:CDS | 50.0% |
| ! | CTCCATTTTCCACCGGACAA+AGG | + | chr3.2:65890837-65890856 | MS.gene29055:CDS | 50.0% |
| ! | GGAGAATTCATAGCGGAACG+AGG | - | chr3.2:65890965-65890984 | None:intergenic | 50.0% |
| ! | TTCATAGCGGAACGAGGGTT+CGG | - | chr3.2:65890959-65890978 | None:intergenic | 50.0% |
| !! | TCTTCGGTGACTCTGAAGTC+AGG | + | chr3.2:65892738-65892757 | MS.gene29055:CDS | 50.0% |
| ACAAAGCCTGACTGGTGGGA+TGG | + | chr3.2:65891975-65891994 | MS.gene29055:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3.2:65891459-65891478 | None:intergenic | 55.0% | |
| AGAAGGAAATGGTGAGGCGG+AGG | - | chr3.2:65890819-65890838 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.2:65891458-65891477 | MS.gene29055:intron | 55.0% | |
| CATAGTCCTCCTTTGTCCGG+TGG | - | chr3.2:65890849-65890868 | None:intergenic | 55.0% | |
| GCGCTACCAACATCCATGAC+AGG | - | chr3.2:65890929-65890948 | None:intergenic | 55.0% | |
| GGAACGAGGGTTCGGGAAAT+CGG | - | chr3.2:65890951-65890970 | None:intergenic | 55.0% | |
| GGGAGGGAGGAGAGAACTTA+CGG | - | chr3.2:65892377-65892396 | None:intergenic | 55.0% | |
| TCCGCACCTGAATTGAGGTC+AGG | - | chr3.2:65891532-65891551 | None:intergenic | 55.0% | |
| ! | TCATAGCGGAACGAGGGTTC+GGG | - | chr3.2:65890958-65890977 | None:intergenic | 55.0% |
| !! | CGACCCCACTTAGTGGACTA+AGG | + | chr3.2:65891465-65891484 | MS.gene29055:intron | 55.0% |
| AGCCAGGATTGGGGAACTGG+GGG | + | chr3.2:65891551-65891570 | MS.gene29055:intron | 60.0% | |
| ATCCCCCAGTTCCCCAATCC+TGG | - | chr3.2:65891556-65891575 | None:intergenic | 60.0% | |
| CTCAATTCAGGTGCGGAGCC+AGG | + | chr3.2:65891535-65891554 | MS.gene29055:intron | 60.0% | |
| CTGGCTCCGCACCTGAATTG+AGG | - | chr3.2:65891537-65891556 | None:intergenic | 60.0% | |
| GAGCCAGGATTGGGGAACTG+GGG | + | chr3.2:65891550-65891569 | MS.gene29055:intron | 60.0% | |
| GGAGCCAGGATTGGGGAACT+GGG | + | chr3.2:65891549-65891568 | MS.gene29055:intron | 60.0% | |
| TCAGGTGCGGAGCCAGGATT+GGG | + | chr3.2:65891541-65891560 | MS.gene29055:intron | 60.0% | |
| TTCAGGTGCGGAGCCAGGAT+TGG | + | chr3.2:65891540-65891559 | MS.gene29055:intron | 60.0% | |
| !! | GAAACGACGGTGTTGTGCCC+AGG | - | chr3.2:65890766-65890785 | None:intergenic | 60.0% |
| CAGGTGCGGAGCCAGGATTG+GGG | + | chr3.2:65891542-65891561 | MS.gene29055:intron | 65.0% | |
| CGGAGCCAGGATTGGGGAAC+TGG | + | chr3.2:65891548-65891567 | MS.gene29055:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 65890647 | 65893315 | 65890647 | ID=MS.gene29055 |
| chr3.2 | mRNA | 65890647 | 65893315 | 65890647 | ID=MS.gene29055.t1;Parent=MS.gene29055 |
| chr3.2 | exon | 65890647 | 65891013 | 65890647 | ID=MS.gene29055.t1.exon1;Parent=MS.gene29055.t1 |
| chr3.2 | CDS | 65890647 | 65891013 | 65890647 | ID=cds.MS.gene29055.t1;Parent=MS.gene29055.t1 |
| chr3.2 | exon | 65891129 | 65891304 | 65891129 | ID=MS.gene29055.t1.exon2;Parent=MS.gene29055.t1 |
| chr3.2 | CDS | 65891129 | 65891304 | 65891129 | ID=cds.MS.gene29055.t1;Parent=MS.gene29055.t1 |
| chr3.2 | exon | 65892272 | 65892375 | 65892272 | ID=MS.gene29055.t1.exon3;Parent=MS.gene29055.t1 |
| chr3.2 | CDS | 65892272 | 65892375 | 65892272 | ID=cds.MS.gene29055.t1;Parent=MS.gene29055.t1 |
| chr3.2 | exon | 65892683 | 65892794 | 65892683 | ID=MS.gene29055.t1.exon4;Parent=MS.gene29055.t1 |
| chr3.2 | CDS | 65892683 | 65892794 | 65892683 | ID=cds.MS.gene29055.t1;Parent=MS.gene29055.t1 |
| chr3.2 | exon | 65893247 | 65893315 | 65893247 | ID=MS.gene29055.t1.exon5;Parent=MS.gene29055.t1 |
| chr3.2 | CDS | 65893247 | 65893315 | 65893247 | ID=cds.MS.gene29055.t1;Parent=MS.gene29055.t1 |
| Gene Sequence |
| Protein sequence |
