Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29099.t1 | XP_003601103.1 | 99.5 | 196 | 1 | 0 | 1 | 196 | 80 | 275 | 1.50E-105 | 392.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29099.t1 | Q9LIG6 | 84.5 | 194 | 30 | 0 | 1 | 194 | 86 | 279 | 1.6e-92 | 340.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29099.t1 | G7J3M0 | 99.5 | 196 | 1 | 0 | 1 | 196 | 80 | 275 | 1.1e-105 | 392.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25969 | MS.gene29099 | PPI |
| MS.gene29099 | MS.gene70632 | PPI |
| MS.gene83301 | MS.gene29099 | PPI |
| MS.gene29099 | MS.gene038497 | PPI |
| MS.gene29099 | MS.gene29363 | PPI |
| MS.gene009043 | MS.gene29099 | PPI |
| MS.gene29099 | MS.gene009053 | PPI |
| MS.gene022304 | MS.gene29099 | PPI |
| MS.gene29099 | MS.gene61049 | PPI |
| MS.gene29099 | MS.gene069794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29099.t1 | MTR_3g073070 | 99.490 | 196 | 1 | 0 | 1 | 196 | 80 | 275 | 2.87e-144 | 402 |
| MS.gene29099.t1 | MTR_1g069215 | 98.469 | 196 | 3 | 0 | 1 | 196 | 82 | 277 | 1.16e-142 | 398 |
| MS.gene29099.t1 | MTR_3g073070 | 95.604 | 182 | 8 | 0 | 1 | 182 | 80 | 261 | 3.67e-128 | 362 |
| MS.gene29099.t1 | MTR_2g005900 | 46.269 | 67 | 34 | 1 | 119 | 185 | 85 | 149 | 1.58e-12 | 64.3 |
| MS.gene29099.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 119 | 185 | 103 | 167 | 3.07e-12 | 63.2 |
| MS.gene29099.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 119 | 185 | 103 | 167 | 4.63e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29099.t1 | AT3G20970 | 84.536 | 194 | 30 | 0 | 1 | 194 | 86 | 279 | 1.31e-123 | 350 |
| MS.gene29099.t1 | AT1G51390 | 83.957 | 187 | 30 | 0 | 1 | 187 | 81 | 267 | 5.77e-119 | 338 |
| MS.gene29099.t1 | AT3G20970 | 84.672 | 137 | 21 | 0 | 1 | 137 | 86 | 222 | 1.53e-84 | 249 |
| MS.gene29099.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 119 | 185 | 97 | 161 | 4.97e-13 | 65.1 |
| MS.gene29099.t1 | AT4G25910 | 47.761 | 67 | 33 | 1 | 119 | 185 | 96 | 160 | 6.79e-13 | 65.5 |
| MS.gene29099.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 119 | 185 | 97 | 161 | 8.72e-13 | 65.1 |
Find 48 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATCAAGGAACTTT+TGG | 0.209765 | 3.4:+71946988 | MS.gene29099:CDS |
| TGAAATCTTTGCCGCTATTA+TGG | 0.218248 | 3.4:+71945907 | MS.gene29099:CDS |
| CCACGATGCATCTTCCGATT+TGG | 0.310465 | 3.4:-71945870 | None:intergenic |
| TTCATAGCGGAACGAGGGTT+CGG | 0.314773 | 3.4:-71945661 | None:intergenic |
| ATAATAGCGGCAAAGATTTC+AGG | 0.329502 | 3.4:-71945905 | None:intergenic |
| ATCATGAATTGCTGTGTCTT+TGG | 0.335385 | 3.4:-71945981 | None:intergenic |
| ATTATGGATTTCTACTCTTC+CGG | 0.349184 | 3.4:+71945923 | MS.gene29099:CDS |
| AACATAAGAGACTCTGGATT+TGG | 0.370612 | 3.4:-71945595 | None:intergenic |
| TCATAGCGGAACGAGGGTTC+GGG | 0.382077 | 3.4:-71945660 | None:intergenic |
| GGAACGAGGGTTCGGGAAAT+CGG | 0.395541 | 3.4:-71945653 | None:intergenic |
| CAAAGGTGTGGAACAAGAAT+TGG | 0.398435 | 3.4:+71947940 | MS.gene29099:CDS |
| TTCAGAGTCACCGAAGAACT+TGG | 0.442159 | 3.4:-71947423 | None:intergenic |
| TAGTGGCTGCCCAAGTTCTT+CGG | 0.469327 | 3.4:+71947413 | MS.gene29099:CDS |
| GTCTAGAAAGAGTGGTTCAC+CGG | 0.487455 | 3.4:-71945942 | None:intergenic |
| TCTTCGGTGACTCTGAAGTC+AGG | 0.490374 | 3.4:+71947429 | MS.gene29099:CDS |
| GGTGGGGACATTGTATATTG+TGG | 0.499614 | 3.4:+71947043 | MS.gene29099:CDS |
| AGAATTGGATGGCGAGGAAG+AGG | 0.507801 | 3.4:+71947955 | MS.gene29099:CDS |
| TGAAACAGTTGCAATGATCA+AGG | 0.511525 | 3.4:+71946979 | MS.gene29099:CDS |
| GAAGAGGAAGCAGCTTTAAG+TGG | 0.530262 | 3.4:+71947971 | MS.gene29099:CDS |
| GTGAAAATTGATTTAGCGAG+AGG | 0.538554 | 3.4:-71945688 | None:intergenic |
| GGATGAAACATAAGAGACTC+TGG | 0.539372 | 3.4:-71945601 | None:intergenic |
| ACATCCATGACAGGTTTACC+AGG | 0.541119 | 3.4:-71945622 | None:intergenic |
| CGACCAACTGTACAAGATGA+TGG | 0.541545 | 3.4:+71947022 | MS.gene29099:CDS |
| AATTGCTGTGTCTTTGGAAG+CGG | 0.555636 | 3.4:-71945975 | None:intergenic |
| ATCGTCAAACTTAAAATGCA+AGG | 0.563819 | 3.4:+71947384 | MS.gene29099:CDS |
| CAACTGTACAAGATGATGGT+GGG | 0.564735 | 3.4:+71947026 | MS.gene29099:CDS |
| TTGCTGCATTTACAGGTCAA+AGG | 0.565990 | 3.4:+71947923 | MS.gene29099:intron |
| CCACCATCATCTTGTACAGT+TGG | 0.572483 | 3.4:-71947025 | None:intergenic |
| GAGTCTCTTATGTTTCATCC+TGG | 0.574002 | 3.4:+71945604 | MS.gene29099:CDS |
| GGTAAACCTGTCATGGATGT+TGG | 0.587174 | 3.4:+71945625 | MS.gene29099:CDS |
| TCATCCTGGTAAACCTGTCA+TGG | 0.592000 | 3.4:+71945618 | MS.gene29099:CDS |
| CAAATCGGAAGATGCATCGT+GGG | 0.592355 | 3.4:+71945871 | MS.gene29099:CDS |
| GCTTGAGAGTCTAGAAAGAG+TGG | 0.594156 | 3.4:-71945950 | None:intergenic |
| AACTGTACAAGATGATGGTG+GGG | 0.603309 | 3.4:+71947027 | MS.gene29099:CDS |
| GCGCTACCAACATCCATGAC+AGG | 0.609183 | 3.4:-71945631 | None:intergenic |
| TCAGAGTCACCGAAGAACTT+GGG | 0.610880 | 3.4:-71947422 | None:intergenic |
| AAAATGCAAGGAGCGTGTAG+TGG | 0.619177 | 3.4:+71947396 | MS.gene29099:CDS |
| CCAACTGTACAAGATGATGG+TGG | 0.622834 | 3.4:+71947025 | MS.gene29099:CDS |
| GCATTTACAGGTCAAAGGTG+TGG | 0.632082 | 3.4:+71947928 | MS.gene29099:intron |
| AAGAGACTCTGGATTTGGAG+TGG | 0.639473 | 3.4:-71945590 | None:intergenic |
| GGAGAATTCATAGCGGAACG+AGG | 0.644818 | 3.4:-71945667 | None:intergenic |
| GGAACAAGAATTGGATGGCG+AGG | 0.646815 | 3.4:+71947949 | MS.gene29099:CDS |
| GAGAATTCATAGCGGAACGA+GGG | 0.651131 | 3.4:-71945666 | None:intergenic |
| CCAAATCGGAAGATGCATCG+TGG | 0.660421 | 3.4:+71945870 | MS.gene29099:CDS |
| AGAGTAGAAATCCATAATAG+CGG | 0.670498 | 3.4:-71945918 | None:intergenic |
| GGTGTGGAACAAGAATTGGA+TGG | 0.704531 | 3.4:+71947944 | MS.gene29099:CDS |
| GCTGATGCATTATGTACCTG+AGG | 0.715793 | 3.4:+71947464 | MS.gene29099:CDS |
| AGCGAGAGGAGAATTCATAG+CGG | 0.791927 | 3.4:-71945674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGAAATTTAAGTAAA+AGG | - | chr3.4:71946069-71946088 | None:intergenic | 10.0% |
| !! | ATACAAATTTAAGAAATGAA+AGG | - | chr3.4:71945777-71945796 | None:intergenic | 15.0% |
| !! | ATTTGATAAATATCATTAGT+TGG | - | chr3.4:71946307-71946326 | None:intergenic | 15.0% |
| !! | CTTGTAATTTAATTATTGTT+TGG | - | chr3.4:71946354-71946373 | None:intergenic | 15.0% |
| !! | GTTTCTCAATATAATATAAT+TGG | - | chr3.4:71947887-71947906 | None:intergenic | 15.0% |
| !!! | ATTATGTTTTTTTTATTTGC+AGG | - | chr3.4:71946605-71946624 | None:intergenic | 15.0% |
| !!! | ATTTGTAATATTCTGTTTTT+AGG | - | chr3.4:71946495-71946514 | None:intergenic | 15.0% |
| !!! | TTATGTTTTTTTTATTTGCA+GGG | - | chr3.4:71946604-71946623 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAACAAAAAAATC+AGG | + | chr3.4:71946749-71946768 | MS.gene29099:intron | 15.0% |
| !!! | TTTTTTTTTTTAATTGTTGC+AGG | + | chr3.4:71945806-71945825 | MS.gene29099:intron | 15.0% |
| !! | ATTGGACAATTCATATAAAA+TGG | - | chr3.4:71947869-71947888 | None:intergenic | 20.0% |
| !! | TAATGTTGTACATTATAGAA+TGG | + | chr3.4:71947314-71947333 | MS.gene29099:intron | 20.0% |
| !! | TAGAATGTTAGTAAATTAGT+GGG | - | chr3.4:71946465-71946484 | None:intergenic | 20.0% |
| !! | TAGTTTATGATAGAACATTA+TGG | + | chr3.4:71946121-71946140 | MS.gene29099:intron | 20.0% |
| !! | TGCAAATCTTATAAGTTAAT+TGG | - | chr3.4:71947679-71947698 | None:intergenic | 20.0% |
| !! | TTAGAATGTTAGTAAATTAG+TGG | - | chr3.4:71946466-71946485 | None:intergenic | 20.0% |
| !! | TTGATTACCGTAAATATAAA+TGG | - | chr3.4:71947540-71947559 | None:intergenic | 20.0% |
| !!! | ATTTTTTAAAGAGAAACCTA+TGG | - | chr3.4:71946846-71946865 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTTTATTTGCAG+GGG | - | chr3.4:71946603-71946622 | None:intergenic | 20.0% |
| !!! | TGTATTTGCTTTTTATATTG+TGG | + | chr3.4:71947341-71947360 | MS.gene29099:intron | 20.0% |
| !!! | TTATTTAAAGCAGCATTAAT+AGG | + | chr3.4:71947836-71947855 | MS.gene29099:intron | 20.0% |
| !!! | TTTTAACAAAAAAATCAGGA+GGG | + | chr3.4:71946753-71946772 | MS.gene29099:intron | 20.0% |
| !!! | TTTTTAACAAAAAAATCAGG+AGG | + | chr3.4:71946752-71946771 | MS.gene29099:intron | 20.0% |
| ! | AAACCCAAATAGAAAAAAAG+AGG | - | chr3.4:71947097-71947116 | None:intergenic | 25.0% |
| ! | AAATAGAATAAGAGATTGAG+AGG | + | chr3.4:71946626-71946645 | MS.gene29099:intron | 25.0% |
| ! | AACCCAAATAGAAAAAAAGA+GGG | - | chr3.4:71947096-71947115 | None:intergenic | 25.0% |
| ! | AGAGTATAGATTATTCATTG+AGG | - | chr3.4:71947131-71947150 | None:intergenic | 25.0% |
| ! | ATATAAATGGAAACAGCAAA+TGG | - | chr3.4:71947527-71947546 | None:intergenic | 25.0% |
| ! | TAATCAAATTGATTGGAAAC+TGG | + | chr3.4:71947553-71947572 | MS.gene29099:intron | 25.0% |
| ! | TTCAAGATGTCAAAACTAAA+TGG | + | chr3.4:71946925-71946944 | MS.gene29099:intron | 25.0% |
| ! | TTTAACAAAAAAATCAGGAG+GGG | + | chr3.4:71946754-71946773 | MS.gene29099:intron | 25.0% |
| ! | TTTACGGTAATCAAATTGAT+TGG | + | chr3.4:71947546-71947565 | MS.gene29099:intron | 25.0% |
| !! | AAATCAATTTTCACGATTGA+CGG | + | chr3.4:71945697-71945716 | MS.gene29099:CDS | 25.0% |
| !! | AAGTCTAAATACTTTTCCAT+AGG | + | chr3.4:71946827-71946846 | MS.gene29099:intron | 25.0% |
| !! | AAGTTTGCATTATCATTTTG+TGG | + | chr3.4:71947491-71947510 | MS.gene29099:intron | 25.0% |
| !! | GCTGTTTCCATTTATATTTA+CGG | + | chr3.4:71947530-71947549 | MS.gene29099:intron | 25.0% |
| !! | TTTAGTTTAGTCTCATTTCA+AGG | + | chr3.4:71946036-71946055 | MS.gene29099:intron | 25.0% |
| !!! | ATGGAAAAGTATTTAGACTT+GGG | - | chr3.4:71946827-71946846 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTGACATCTTGA+AGG | - | chr3.4:71946926-71946945 | None:intergenic | 25.0% |
| !!! | TATGGAAAAGTATTTAGACT+TGG | - | chr3.4:71946828-71946847 | None:intergenic | 25.0% |
| AATCAATCGTGTAAGACAAA+TGG | - | chr3.4:71947715-71947734 | None:intergenic | 30.0% | |
| AGAGTAGAAATCCATAATAG+CGG | - | chr3.4:71945921-71945940 | None:intergenic | 30.0% | |
| ATCGTCAAACTTAAAATGCA+AGG | + | chr3.4:71947384-71947403 | MS.gene29099:CDS | 30.0% | |
| ATTATGGATTTCTACTCTTC+CGG | + | chr3.4:71945923-71945942 | MS.gene29099:CDS | 30.0% | |
| CAAATAGAAAAAAAGAGGGA+GGG | - | chr3.4:71947092-71947111 | None:intergenic | 30.0% | |
| GCAATATCAACATAGAAATG+AGG | - | chr3.4:71946016-71946035 | None:intergenic | 30.0% | |
| TAGTCTCATTTCAAGGAATT+TGG | + | chr3.4:71946043-71946062 | MS.gene29099:intron | 30.0% | |
| ! | GATTTCGAGGGTATATTAAA+AGG | + | chr3.4:71947640-71947659 | MS.gene29099:intron | 30.0% |
| ! | TTTTGTCACTGTTACCAAAT+CGG | + | chr3.4:71945856-71945875 | MS.gene29099:CDS | 30.0% |
| !! | CATTCTTAAGTTGATTTCGA+GGG | + | chr3.4:71947628-71947647 | MS.gene29099:intron | 30.0% |
| !!! | CTCCCTCTTTTTTTCTATTT+GGG | + | chr3.4:71947091-71947110 | MS.gene29099:intron | 30.0% |
| !!! | GTATGAGATTTTTCTAGCTT+AGG | + | chr3.4:71946897-71946916 | MS.gene29099:intron | 30.0% |
| AACATAAGAGACTCTGGATT+TGG | - | chr3.4:71945598-71945617 | None:intergenic | 35.0% | |
| AATCAACTTAAGAATGCCAC+AGG | - | chr3.4:71947624-71947643 | None:intergenic | 35.0% | |
| ACAGAATAGAAAGACCAAGT+TGG | + | chr3.4:71947153-71947172 | MS.gene29099:intron | 35.0% | |
| AGATAAAGTTCAACCCAACT+TGG | - | chr3.4:71947170-71947189 | None:intergenic | 35.0% | |
| ATAATAGCGGCAAAGATTTC+AGG | - | chr3.4:71945908-71945927 | None:intergenic | 35.0% | |
| ATCATGAATTGCTGTGTCTT+TGG | - | chr3.4:71945984-71946003 | None:intergenic | 35.0% | |
| ATTTGCAGGGGCAATTAATA+AGG | - | chr3.4:71946591-71946610 | None:intergenic | 35.0% | |
| CAGAATAGAAAGACCAAGTT+GGG | + | chr3.4:71947154-71947173 | MS.gene29099:intron | 35.0% | |
| CCAAATAGAAAAAAAGAGGG+AGG | - | chr3.4:71947093-71947112 | None:intergenic | 35.0% | |
| TACACGTAGTTCATTACAGA+AGG | - | chr3.4:71947596-71947615 | None:intergenic | 35.0% | |
| TAGTATGCACAATGACAGAT+AGG | - | chr3.4:71947771-71947790 | None:intergenic | 35.0% | |
| TGAAACAGTTGCAATGATCA+AGG | + | chr3.4:71946979-71946998 | MS.gene29099:CDS | 35.0% | |
| TGAAATCTTTGCCGCTATTA+TGG | + | chr3.4:71945907-71945926 | MS.gene29099:CDS | 35.0% | |
| ! | GGAATTACTCGTGTTTTCTT+TGG | + | chr3.4:71945827-71945846 | MS.gene29099:intron | 35.0% |
| ! | GTGAAAATTGATTTAGCGAG+AGG | - | chr3.4:71945691-71945710 | None:intergenic | 35.0% |
| ! | TGCAATGATCAAGGAACTTT+TGG | + | chr3.4:71946988-71947007 | MS.gene29099:CDS | 35.0% |
| ! | TTTTAGTGACCCAAGTTCTT+GGG | + | chr3.4:71946873-71946892 | MS.gene29099:intron | 35.0% |
| !! | ACATTGAAGGAGTACTAACT+AGG | + | chr3.4:71946402-71946421 | MS.gene29099:intron | 35.0% |
| !! | GCATTCTTAAGTTGATTTCG+AGG | + | chr3.4:71947627-71947646 | MS.gene29099:intron | 35.0% |
| !! | TAATGCAAACTTGTTACCTC+AGG | - | chr3.4:71947483-71947502 | None:intergenic | 35.0% |
| !! | TGTGGTTTTCTCTAGAGATA+CGG | + | chr3.4:71947359-71947378 | MS.gene29099:intron | 35.0% |
| !!! | CCTCCCTCTTTTTTTCTATT+TGG | + | chr3.4:71947090-71947109 | MS.gene29099:intron | 35.0% |
| !!! | TAGTTTTGACATCTTGAAGG+TGG | - | chr3.4:71946923-71946942 | None:intergenic | 35.0% |
| AAAAGTCCTGACCTCAATTC+AGG | + | chr3.4:71946222-71946241 | MS.gene29099:intron | 40.0% | |
| AAACCTTAGTCCACTAAGTG+GGG | - | chr3.4:71946170-71946189 | None:intergenic | 40.0% | |
| AAATACAAAGCCTGACTGGT+GGG | + | chr3.4:71946670-71946689 | MS.gene29099:intron | 40.0% | |
| AAGGAAATACAAAGCCTGAC+TGG | + | chr3.4:71946666-71946685 | MS.gene29099:intron | 40.0% | |
| ACAAGTCTATCGTCACAAGT+AGG | + | chr3.4:71946369-71946388 | MS.gene29099:intron | 40.0% | |
| ACTTAAGAATGCCACAGGAA+AGG | - | chr3.4:71947619-71947638 | None:intergenic | 40.0% | |
| ATAGAAAAAAAGAGGGAGGG+AGG | - | chr3.4:71947089-71947108 | None:intergenic | 40.0% | |
| ATCTCATACTCCCAAGAACT+TGG | - | chr3.4:71946886-71946905 | None:intergenic | 40.0% | |
| ATGCTTACCTGTTTGCATAC+AGG | + | chr3.4:71946949-71946968 | MS.gene29099:intron | 40.0% | |
| CAAACCTTAGTCCACTAAGT+GGG | - | chr3.4:71946171-71946190 | None:intergenic | 40.0% | |
| CGTAGTTCATTACAGAAGGA+CGG | - | chr3.4:71947592-71947611 | None:intergenic | 40.0% | |
| GAATCATCCTGTATGCAAAC+AGG | - | chr3.4:71946959-71946978 | None:intergenic | 40.0% | |
| GAGTCTCTTATGTTTCATCC+TGG | + | chr3.4:71945604-71945623 | MS.gene29099:CDS | 40.0% | |
| GCAAGTTTCCAAGACAATGT+TGG | + | chr3.4:71947279-71947298 | MS.gene29099:intron | 40.0% | |
| GGATGAAACATAAGAGACTC+TGG | - | chr3.4:71945604-71945623 | None:intergenic | 40.0% | |
| GGCTGTAGATTTGAAAGGAA+AGG | + | chr3.4:71946647-71946666 | MS.gene29099:intron | 40.0% | |
| GGGATGGATGATTGATGAAT+GGG | + | chr3.4:71946690-71946709 | MS.gene29099:intron | 40.0% | |
| TCAAACCTTAGTCCACTAAG+TGG | - | chr3.4:71946172-71946191 | None:intergenic | 40.0% | |
| TCTCATACTCCCAAGAACTT+GGG | - | chr3.4:71946885-71946904 | None:intergenic | 40.0% | |
| TGAGAGGCTGTAGATTTGAA+AGG | + | chr3.4:71946642-71946661 | MS.gene29099:intron | 40.0% | |
| TGCCTCGATTCAAAAACCAT+TGG | + | chr3.4:71946786-71946805 | MS.gene29099:intron | 40.0% | |
| TGGGATGGATGATTGATGAA+TGG | + | chr3.4:71946689-71946708 | MS.gene29099:intron | 40.0% | |
| TGTCAACACCAACATTGTCT+TGG | - | chr3.4:71947290-71947309 | None:intergenic | 40.0% | |
| TTAGACTTGGGAGATACAAG+AGG | - | chr3.4:71946815-71946834 | None:intergenic | 40.0% | |
| TTGCTGCATTTACAGGTCAA+AGG | + | chr3.4:71947923-71947942 | MS.gene29099:intron | 40.0% | |
| ! | AACTGTACAAGATGATGGTG+GGG | + | chr3.4:71947027-71947046 | MS.gene29099:CDS | 40.0% |
| ! | AATGGTTTTTGAATCGAGGC+AGG | - | chr3.4:71946787-71946806 | None:intergenic | 40.0% |
| ! | AATTGCTGTGTCTTTGGAAG+CGG | - | chr3.4:71945978-71945997 | None:intergenic | 40.0% |
| ! | ATGGTTTTTGAATCGAGGCA+GGG | - | chr3.4:71946786-71946805 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGGAACAAGAAT+TGG | + | chr3.4:71947940-71947959 | MS.gene29099:CDS | 40.0% |
| ! | CAACTGTACAAGATGATGGT+GGG | + | chr3.4:71947026-71947045 | MS.gene29099:CDS | 40.0% |
| ! | CTTTTAGTGACCCAAGTTCT+TGG | + | chr3.4:71946872-71946891 | MS.gene29099:intron | 40.0% |
| ! | TGCCAATGGTTTTTGAATCG+AGG | - | chr3.4:71946791-71946810 | None:intergenic | 40.0% |
| !! | GTGGTTTTCTCTAGAGATAC+GGG | + | chr3.4:71947360-71947379 | MS.gene29099:intron | 40.0% |
| !! | TGGTTTTCTCTAGAGATACG+GGG | + | chr3.4:71947361-71947380 | MS.gene29099:intron | 40.0% |
| AACTACGTGTACCTTTCCTG+TGG | + | chr3.4:71947605-71947624 | MS.gene29099:intron | 45.0% | |
| AAGAGACTCTGGATTTGGAG+TGG | - | chr3.4:71945593-71945612 | None:intergenic | 45.0% | |
| ACATCCATGACAGGTTTACC+AGG | - | chr3.4:71945625-71945644 | None:intergenic | 45.0% | |
| AGCGAGAGGAGAATTCATAG+CGG | - | chr3.4:71945677-71945696 | None:intergenic | 45.0% | |
| CAAATCGGAAGATGCATCGT+GGG | + | chr3.4:71945871-71945890 | MS.gene29099:CDS | 45.0% | |
| CCACCATCATCTTGTACAGT+TGG | - | chr3.4:71947028-71947047 | None:intergenic | 45.0% | |
| CGACCAACTGTACAAGATGA+TGG | + | chr3.4:71947022-71947041 | MS.gene29099:CDS | 45.0% | |
| GAAATACAAAGCCTGACTGG+TGG | + | chr3.4:71946669-71946688 | MS.gene29099:intron | 45.0% | |
| GAGATACAAGAGGATGCCAA+TGG | - | chr3.4:71946805-71946824 | None:intergenic | 45.0% | |
| GCATTTACAGGTCAAAGGTG+TGG | + | chr3.4:71947928-71947947 | MS.gene29099:intron | 45.0% | |
| GCTGATGCATTATGTACCTG+AGG | + | chr3.4:71947464-71947483 | MS.gene29099:CDS | 45.0% | |
| GCTTGAGAGTCTAGAAAGAG+TGG | - | chr3.4:71945953-71945972 | None:intergenic | 45.0% | |
| GGTAAACCTGTCATGGATGT+TGG | + | chr3.4:71945625-71945644 | MS.gene29099:CDS | 45.0% | |
| GGTGGGGACATTGTATATTG+TGG | + | chr3.4:71947043-71947062 | MS.gene29099:CDS | 45.0% | |
| GGTGTGGAACAAGAATTGGA+TGG | + | chr3.4:71947944-71947963 | MS.gene29099:CDS | 45.0% | |
| GTAAATGCAGCAAGCAGCAT+TGG | - | chr3.4:71947916-71947935 | None:intergenic | 45.0% | |
| GTCTAGAAAGAGTGGTTCAC+CGG | - | chr3.4:71945945-71945964 | None:intergenic | 45.0% | |
| TACAGAAGGACGGTAAGTTG+AGG | - | chr3.4:71947582-71947601 | None:intergenic | 45.0% | |
| TCAGAGTCACCGAAGAACTT+GGG | - | chr3.4:71947425-71947444 | None:intergenic | 45.0% | |
| TCATCCTGGTAAACCTGTCA+TGG | + | chr3.4:71945618-71945637 | MS.gene29099:CDS | 45.0% | |
| TGCACAATGACAGATAGGTC+TGG | - | chr3.4:71947766-71947785 | None:intergenic | 45.0% | |
| TTCAGAGTCACCGAAGAACT+TGG | - | chr3.4:71947426-71947445 | None:intergenic | 45.0% | |
| ! | AAAATGCAAGGAGCGTGTAG+TGG | + | chr3.4:71947396-71947415 | MS.gene29099:CDS | 45.0% |
| ! | ATGCTGCTTGCTGCATTTAC+AGG | + | chr3.4:71947916-71947935 | MS.gene29099:intron | 45.0% |
| ! | CCAACTGTACAAGATGATGG+TGG | + | chr3.4:71947025-71947044 | MS.gene29099:CDS | 45.0% |
| ! | GAGAATTCATAGCGGAACGA+GGG | - | chr3.4:71945669-71945688 | None:intergenic | 45.0% |
| ! | TGGTTTTTGAATCGAGGCAG+GGG | - | chr3.4:71946785-71946804 | None:intergenic | 45.0% |
| !! | GAAGAGGAAGCAGCTTTAAG+TGG | + | chr3.4:71947971-71947990 | MS.gene29099:CDS | 45.0% |
| !!! | AAATTTATCATAATTTTTTT+AGG | + | chr3.4:71946511-71946530 | MS.gene29099:intron | 5.0% |
| AATCATCCATCCCACCAGTC+AGG | - | chr3.4:71946683-71946702 | None:intergenic | 50.0% | |
| AGAATTGGATGGCGAGGAAG+AGG | + | chr3.4:71947955-71947974 | MS.gene29099:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3.4:71945727-71945746 | None:intergenic | 50.0% | |
| AGGCAGCTGAGAGACATTGA+AGG | + | chr3.4:71946389-71946408 | MS.gene29099:intron | 50.0% | |
| CCAAATCGGAAGATGCATCG+TGG | + | chr3.4:71945870-71945889 | MS.gene29099:CDS | 50.0% | |
| CCACGATGCATCTTCCGATT+TGG | - | chr3.4:71945873-71945892 | None:intergenic | 50.0% | |
| CTTAGTCCACTAAGTGGGGT+CGG | - | chr3.4:71946166-71946185 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3.4:71945728-71945747 | None:intergenic | 50.0% | |
| GGAACAAGAATTGGATGGCG+AGG | + | chr3.4:71947949-71947968 | MS.gene29099:CDS | 50.0% | |
| TAGTGGCTGCCCAAGTTCTT+CGG | + | chr3.4:71947413-71947432 | MS.gene29099:CDS | 50.0% | |
| TCCTGACCTCAATTCAGGTG+CGG | + | chr3.4:71946227-71946246 | MS.gene29099:intron | 50.0% | |
| ! | GGAGAATTCATAGCGGAACG+AGG | - | chr3.4:71945670-71945689 | None:intergenic | 50.0% |
| ! | TTCATAGCGGAACGAGGGTT+CGG | - | chr3.4:71945664-71945683 | None:intergenic | 50.0% |
| !! | TCTTCGGTGACTCTGAAGTC+AGG | + | chr3.4:71947429-71947448 | MS.gene29099:CDS | 50.0% |
| ACAAAGCCTGACTGGTGGGA+TGG | + | chr3.4:71946674-71946693 | MS.gene29099:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3.4:71946158-71946177 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.4:71946157-71946176 | MS.gene29099:intron | 55.0% | |
| GCGCTACCAACATCCATGAC+AGG | - | chr3.4:71945634-71945653 | None:intergenic | 55.0% | |
| GGAACGAGGGTTCGGGAAAT+CGG | - | chr3.4:71945656-71945675 | None:intergenic | 55.0% | |
| GGGAGGGAGGAGAGAACTTA+CGG | - | chr3.4:71947076-71947095 | None:intergenic | 55.0% | |
| TCCGCACCTGAATTGAGGTC+AGG | - | chr3.4:71946231-71946250 | None:intergenic | 55.0% | |
| ! | TCATAGCGGAACGAGGGTTC+GGG | - | chr3.4:71945663-71945682 | None:intergenic | 55.0% |
| !! | CGACCCCACTTAGTGGACTA+AGG | + | chr3.4:71946164-71946183 | MS.gene29099:intron | 55.0% |
| AGCCAGGATTGGGGAACTGG+GGG | + | chr3.4:71946250-71946269 | MS.gene29099:intron | 60.0% | |
| ATCCCCCAGTTCCCCAATCC+TGG | - | chr3.4:71946255-71946274 | None:intergenic | 60.0% | |
| CTCAATTCAGGTGCGGAGCC+AGG | + | chr3.4:71946234-71946253 | MS.gene29099:intron | 60.0% | |
| CTGGCTCCGCACCTGAATTG+AGG | - | chr3.4:71946236-71946255 | None:intergenic | 60.0% | |
| GAGCCAGGATTGGGGAACTG+GGG | + | chr3.4:71946249-71946268 | MS.gene29099:intron | 60.0% | |
| GGAGCCAGGATTGGGGAACT+GGG | + | chr3.4:71946248-71946267 | MS.gene29099:intron | 60.0% | |
| TCAGGTGCGGAGCCAGGATT+GGG | + | chr3.4:71946240-71946259 | MS.gene29099:intron | 60.0% | |
| TTCAGGTGCGGAGCCAGGAT+TGG | + | chr3.4:71946239-71946258 | MS.gene29099:intron | 60.0% | |
| CAGGTGCGGAGCCAGGATTG+GGG | + | chr3.4:71946241-71946260 | MS.gene29099:intron | 65.0% | |
| CGGAGCCAGGATTGGGGAAC+TGG | + | chr3.4:71946247-71946266 | MS.gene29099:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71945589 | 71948006 | 71945589 | ID=MS.gene29099 |
| chr3.4 | mRNA | 71945589 | 71948006 | 71945589 | ID=MS.gene29099.t1;Parent=MS.gene29099 |
| chr3.4 | exon | 71945589 | 71945718 | 71945589 | ID=MS.gene29099.t1.exon1;Parent=MS.gene29099.t1 |
| chr3.4 | CDS | 71945589 | 71945718 | 71945589 | ID=cds.MS.gene29099.t1;Parent=MS.gene29099.t1 |
| chr3.4 | exon | 71945828 | 71946003 | 71945828 | ID=MS.gene29099.t1.exon2;Parent=MS.gene29099.t1 |
| chr3.4 | CDS | 71945828 | 71946003 | 71945828 | ID=cds.MS.gene29099.t1;Parent=MS.gene29099.t1 |
| chr3.4 | exon | 71946971 | 71947074 | 71946971 | ID=MS.gene29099.t1.exon3;Parent=MS.gene29099.t1 |
| chr3.4 | CDS | 71946971 | 71947074 | 71946971 | ID=cds.MS.gene29099.t1;Parent=MS.gene29099.t1 |
| chr3.4 | exon | 71947374 | 71947485 | 71947374 | ID=MS.gene29099.t1.exon4;Parent=MS.gene29099.t1 |
| chr3.4 | CDS | 71947374 | 71947485 | 71947374 | ID=cds.MS.gene29099.t1;Parent=MS.gene29099.t1 |
| chr3.4 | exon | 71947938 | 71948006 | 71947938 | ID=MS.gene29099.t1.exon5;Parent=MS.gene29099.t1 |
| chr3.4 | CDS | 71947938 | 71948006 | 71947938 | ID=cds.MS.gene29099.t1;Parent=MS.gene29099.t1 |
| Gene Sequence |
| Protein sequence |
