Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29101.t1 | XP_003601103.1 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 1.30E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29101.t1 | Q9LIG6 | 84.6 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 5.6e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29101.t1 | G7J3M0 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 9.1e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25969 | MS.gene29101 | PPI |
| MS.gene038497 | MS.gene29101 | PPI |
| MS.gene61049 | MS.gene29101 | PPI |
| MS.gene009053 | MS.gene29101 | PPI |
| MS.gene83301 | MS.gene29101 | PPI |
| MS.gene70632 | MS.gene29101 | PPI |
| MS.gene29363 | MS.gene29101 | PPI |
| MS.gene009043 | MS.gene29101 | PPI |
| MS.gene022304 | MS.gene29101 | PPI |
| MS.gene069794 | MS.gene29101 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29101.t1 | MTR_3g073070 | 98.545 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 0.0 | 562 |
| MS.gene29101.t1 | MTR_3g073070 | 95.785 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 0.0 | 521 |
| MS.gene29101.t1 | MTR_1g069215 | 93.141 | 277 | 17 | 1 | 1 | 275 | 1 | 277 | 3.20e-159 | 444 |
| MS.gene29101.t1 | MTR_2g005900 | 41.053 | 95 | 50 | 3 | 173 | 264 | 58 | 149 | 4.67e-12 | 64.3 |
| MS.gene29101.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 5.59e-12 | 63.9 |
| MS.gene29101.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 1.08e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29101.t1 | AT3G20970 | 84.615 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 1.17e-132 | 377 |
| MS.gene29101.t1 | AT1G51390 | 81.429 | 210 | 38 | 1 | 57 | 266 | 59 | 267 | 1.29e-126 | 361 |
| MS.gene29101.t1 | AT3G20970 | 84.768 | 151 | 23 | 0 | 66 | 216 | 72 | 222 | 2.30e-93 | 275 |
| MS.gene29101.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 1.30e-12 | 65.5 |
| MS.gene29101.t1 | AT4G25910 | 47.761 | 67 | 33 | 1 | 198 | 264 | 96 | 160 | 2.03e-12 | 65.9 |
| MS.gene29101.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 3.09e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATCAAGGAACTTT+TGG | 0.209765 | 3.4:+71935180 | MS.gene29101:CDS |
| TGAAATCTTTGCCGCTATTA+TGG | 0.218248 | 3.4:+71934100 | MS.gene29101:CDS |
| CTCCTTTGTCCGGTGGAAAA+TGG | 0.263576 | 3.4:-71933737 | None:intergenic |
| TACAAATTGTTCTCGTTGCC+TGG | 0.300775 | 3.4:+71933643 | MS.gene29101:CDS |
| CCACGATGCATCTTCCGATT+TGG | 0.310465 | 3.4:-71934063 | None:intergenic |
| TTCATAGCGGAACGAGGGTT+CGG | 0.314773 | 3.4:-71933854 | None:intergenic |
| ATAATAGCGGCAAAGATTTC+AGG | 0.329502 | 3.4:-71934098 | None:intergenic |
| ATCATGAATTGCTGTGTCTT+TGG | 0.335385 | 3.4:-71934174 | None:intergenic |
| ATTATGGATTTCTACTCTTC+CGG | 0.349184 | 3.4:+71934116 | MS.gene29101:CDS |
| GTCGTAATCGTCTTCCTAAT+CGG | 0.363079 | 3.4:-71933571 | None:intergenic |
| AACATAAGAGACTCTGGATT+TGG | 0.370612 | 3.4:-71933788 | None:intergenic |
| GATTTGGAGTGGACTGTGTT+TGG | 0.376256 | 3.4:-71933772 | None:intergenic |
| TCATAGCGGAACGAGGGTTC+GGG | 0.382077 | 3.4:-71933853 | None:intergenic |
| GGAACGAGGGTTCGGGAAAT+CGG | 0.395541 | 3.4:-71933846 | None:intergenic |
| GTGATTAGTCTCTGGTTTGA+GGG | 0.396383 | 3.4:-71933609 | None:intergenic |
| CAAAGGTGTGGAACAAGAAT+TGG | 0.398435 | 3.4:+71936132 | MS.gene29101:CDS |
| TGAGGCGGAGGAAGAGAAAA+AGG | 0.403424 | 3.4:-71933702 | None:intergenic |
| TGTGATTAGTCTCTGGTTTG+AGG | 0.424340 | 3.4:-71933610 | None:intergenic |
| TTCAGAGTCACCGAAGAACT+TGG | 0.442159 | 3.4:-71935615 | None:intergenic |
| GTGAATAATGTCGGTGGTGA+GGG | 0.452534 | 3.4:+71933538 | None:intergenic |
| AGATTATTGTGATTAGTCTC+TGG | 0.463457 | 3.4:-71933617 | None:intergenic |
| TAGTGGCTGCCCAAGTTCTT+CGG | 0.469327 | 3.4:+71935605 | MS.gene29101:CDS |
| GTCTAGAAAGAGTGGTTCAC+CGG | 0.487455 | 3.4:-71934135 | None:intergenic |
| TCTTCGGTGACTCTGAAGTC+AGG | 0.490374 | 3.4:+71935621 | MS.gene29101:CDS |
| GAAACGACGGTGTTGTGCCC+AGG | 0.492397 | 3.4:-71933661 | None:intergenic |
| GGTGGGGACATTGTATATTG+TGG | 0.499614 | 3.4:+71935235 | MS.gene29101:CDS |
| AGAAGGAAATGGTGAGGCGG+AGG | 0.506688 | 3.4:-71933714 | None:intergenic |
| AGAATTGGATGGCGAGGAAG+AGG | 0.507801 | 3.4:+71936147 | MS.gene29101:CDS |
| TGAAACAGTTGCAATGATCA+AGG | 0.511525 | 3.4:+71935171 | MS.gene29101:CDS |
| GTGGAAAATGGAGAAGGAAA+TGG | 0.515300 | 3.4:-71933725 | None:intergenic |
| AAACATAGTCCTCCTTTGTC+CGG | 0.524701 | 3.4:-71933747 | None:intergenic |
| GAAGAGGAAGCAGCTTTAAG+TGG | 0.530262 | 3.4:+71936163 | MS.gene29101:CDS |
| GTGAAAATTGATTTAGCGAG+AGG | 0.538554 | 3.4:-71933881 | None:intergenic |
| GGATGAAACATAAGAGACTC+TGG | 0.539372 | 3.4:-71933794 | None:intergenic |
| ACAAATTGTTCTCGTTGCCT+GGG | 0.539498 | 3.4:+71933644 | MS.gene29101:CDS |
| ACATCCATGACAGGTTTACC+AGG | 0.541119 | 3.4:-71933815 | None:intergenic |
| CGACCAACTGTACAAGATGA+TGG | 0.541545 | 3.4:+71935214 | MS.gene29101:CDS |
| AATTGCTGTGTCTTTGGAAG+CGG | 0.555636 | 3.4:-71934168 | None:intergenic |
| CGTGAATAATGTCGGTGGTG+AGG | 0.563248 | 3.4:+71933537 | None:intergenic |
| ATCGTCAAACTTAAAATGCA+AGG | 0.563819 | 3.4:+71935576 | MS.gene29101:CDS |
| CAACTGTACAAGATGATGGT+GGG | 0.564735 | 3.4:+71935218 | MS.gene29101:CDS |
| TTGCTGCATTTACAGGTCAA+AGG | 0.565990 | 3.4:+71936115 | MS.gene29101:intron |
| CCACCATCATCTTGTACAGT+TGG | 0.572483 | 3.4:-71935217 | None:intergenic |
| GAGTCTCTTATGTTTCATCC+TGG | 0.574002 | 3.4:+71933797 | MS.gene29101:CDS |
| GGTAAACCTGTCATGGATGT+TGG | 0.587174 | 3.4:+71933818 | MS.gene29101:CDS |
| TCATCCTGGTAAACCTGTCA+TGG | 0.592000 | 3.4:+71933811 | MS.gene29101:CDS |
| CAAATCGGAAGATGCATCGT+GGG | 0.592355 | 3.4:+71934064 | MS.gene29101:CDS |
| GCTTGAGAGTCTAGAAAGAG+TGG | 0.594156 | 3.4:-71934143 | None:intergenic |
| AACTGTACAAGATGATGGTG+GGG | 0.603309 | 3.4:+71935219 | MS.gene29101:CDS |
| GCGCTACCAACATCCATGAC+AGG | 0.609183 | 3.4:-71933824 | None:intergenic |
| TCAGAGTCACCGAAGAACTT+GGG | 0.610880 | 3.4:-71935614 | None:intergenic |
| TGAATAATGTCGGTGGTGAG+GGG | 0.610912 | 3.4:+71933539 | None:intergenic |
| TGTCCGGTGGAAAATGGAGA+AGG | 0.612110 | 3.4:-71933731 | None:intergenic |
| CATAGTCCTCCTTTGTCCGG+TGG | 0.613263 | 3.4:-71933744 | None:intergenic |
| AAAATGCAAGGAGCGTGTAG+TGG | 0.619177 | 3.4:+71935588 | MS.gene29101:CDS |
| CCAACTGTACAAGATGATGG+TGG | 0.622834 | 3.4:+71935217 | MS.gene29101:CDS |
| GCATTTACAGGTCAAAGGTG+TGG | 0.632082 | 3.4:+71936120 | MS.gene29101:intron |
| TGGAGAAGGAAATGGTGAGG+CGG | 0.634856 | 3.4:-71933717 | None:intergenic |
| AAGAGACTCTGGATTTGGAG+TGG | 0.639473 | 3.4:-71933783 | None:intergenic |
| GGAGAATTCATAGCGGAACG+AGG | 0.644818 | 3.4:-71933860 | None:intergenic |
| GGAACAAGAATTGGATGGCG+AGG | 0.646815 | 3.4:+71936141 | MS.gene29101:CDS |
| GAGAATTCATAGCGGAACGA+GGG | 0.651131 | 3.4:-71933859 | None:intergenic |
| CCAAATCGGAAGATGCATCG+TGG | 0.660421 | 3.4:+71934063 | MS.gene29101:CDS |
| TTAGGAAGACGATTACGACT+AGG | 0.667897 | 3.4:+71933575 | MS.gene29101:CDS |
| AGAGTAGAAATCCATAATAG+CGG | 0.670498 | 3.4:-71934111 | None:intergenic |
| AAATGGAGAAGGAAATGGTG+AGG | 0.682646 | 3.4:-71933720 | None:intergenic |
| CAGATCGTGAATAATGTCGG+TGG | 0.693370 | 3.4:+71933532 | None:intergenic |
| GGTGTGGAACAAGAATTGGA+TGG | 0.704531 | 3.4:+71936136 | MS.gene29101:CDS |
| GCTGATGCATTATGTACCTG+AGG | 0.715793 | 3.4:+71935656 | MS.gene29101:CDS |
| TGGTTGCGAGGTTGAAACGA+CGG | 0.733707 | 3.4:-71933674 | None:intergenic |
| AGCGAGAGGAGAATTCATAG+CGG | 0.791927 | 3.4:-71933867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGAAATTTAAGTAAA+AGG | - | chr3.4:71934262-71934281 | None:intergenic | 10.0% |
| !! | ATACAAATTTAAGAAATGAA+AGG | - | chr3.4:71933970-71933989 | None:intergenic | 15.0% |
| !! | ATTTGATAAATATCATTAGT+TGG | - | chr3.4:71934500-71934519 | None:intergenic | 15.0% |
| !! | CTTGTAATTTAATTATTGTT+TGG | - | chr3.4:71934547-71934566 | None:intergenic | 15.0% |
| !! | GTTTCTCAATATAATATAAT+TGG | - | chr3.4:71936079-71936098 | None:intergenic | 15.0% |
| !!! | ATTATGTTTTTTTTATTTGC+AGG | - | chr3.4:71934798-71934817 | None:intergenic | 15.0% |
| !!! | ATTTGTAATATTCTGTTTTT+AGG | - | chr3.4:71934688-71934707 | None:intergenic | 15.0% |
| !!! | TTATGTTTTTTTTATTTGCA+GGG | - | chr3.4:71934797-71934816 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAACAAAAAAATC+AGG | + | chr3.4:71934942-71934961 | MS.gene29101:intron | 15.0% |
| !!! | TTTTTTTTTTTAATTGTTGC+AGG | + | chr3.4:71933999-71934018 | MS.gene29101:intron | 15.0% |
| !! | ATTGGACAATTCATATAAAA+TGG | - | chr3.4:71936061-71936080 | None:intergenic | 20.0% |
| !! | TAATGTTGTACATTATAGAA+TGG | + | chr3.4:71935506-71935525 | MS.gene29101:intron | 20.0% |
| !! | TAGAATGTTAGTAAATTAGT+GGG | - | chr3.4:71934658-71934677 | None:intergenic | 20.0% |
| !! | TAGTTTATGATAGAACATTA+TGG | + | chr3.4:71934314-71934333 | MS.gene29101:intron | 20.0% |
| !! | TGCAAATCTTATAAGTTAAT+TGG | - | chr3.4:71935871-71935890 | None:intergenic | 20.0% |
| !! | TTAGAATGTTAGTAAATTAG+TGG | - | chr3.4:71934659-71934678 | None:intergenic | 20.0% |
| !! | TTGATTACCGTAAATATAAA+TGG | - | chr3.4:71935732-71935751 | None:intergenic | 20.0% |
| !!! | ATTTTTTAAAGAGAAACCTA+TGG | - | chr3.4:71935039-71935058 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTTTATTTGCAG+GGG | - | chr3.4:71934796-71934815 | None:intergenic | 20.0% |
| !!! | TGTATTTGCTTTTTATATTG+TGG | + | chr3.4:71935533-71935552 | MS.gene29101:intron | 20.0% |
| !!! | TTATTTAAAGCAGCATTAAT+AGG | + | chr3.4:71936028-71936047 | MS.gene29101:intron | 20.0% |
| !!! | TTTTAACAAAAAAATCAGGA+GGG | + | chr3.4:71934946-71934965 | MS.gene29101:intron | 20.0% |
| !!! | TTTTTAACAAAAAAATCAGG+AGG | + | chr3.4:71934945-71934964 | MS.gene29101:intron | 20.0% |
| ! | AAACCCAAATAGAAAAAAAG+AGG | - | chr3.4:71935289-71935308 | None:intergenic | 25.0% |
| ! | AAATAGAATAAGAGATTGAG+AGG | + | chr3.4:71934819-71934838 | MS.gene29101:intron | 25.0% |
| ! | AACCCAAATAGAAAAAAAGA+GGG | - | chr3.4:71935288-71935307 | None:intergenic | 25.0% |
| ! | AGAGTATAGATTATTCATTG+AGG | - | chr3.4:71935323-71935342 | None:intergenic | 25.0% |
| ! | ATATAAATGGAAACAGCAAA+TGG | - | chr3.4:71935719-71935738 | None:intergenic | 25.0% |
| ! | TAATCAAATTGATTGGAAAC+TGG | + | chr3.4:71935745-71935764 | MS.gene29101:intron | 25.0% |
| ! | TTCAAGATGTCAAAACTAAA+TGG | + | chr3.4:71935117-71935136 | MS.gene29101:intron | 25.0% |
| ! | TTTAACAAAAAAATCAGGAG+GGG | + | chr3.4:71934947-71934966 | MS.gene29101:intron | 25.0% |
| ! | TTTACGGTAATCAAATTGAT+TGG | + | chr3.4:71935738-71935757 | MS.gene29101:intron | 25.0% |
| !! | AAATCAATTTTCACGATTGA+CGG | + | chr3.4:71933890-71933909 | MS.gene29101:CDS | 25.0% |
| !! | AAGTCTAAATACTTTTCCAT+AGG | + | chr3.4:71935020-71935039 | MS.gene29101:intron | 25.0% |
| !! | AAGTTTGCATTATCATTTTG+TGG | + | chr3.4:71935683-71935702 | MS.gene29101:intron | 25.0% |
| !! | GCTGTTTCCATTTATATTTA+CGG | + | chr3.4:71935722-71935741 | MS.gene29101:intron | 25.0% |
| !! | TTTAGTTTAGTCTCATTTCA+AGG | + | chr3.4:71934229-71934248 | MS.gene29101:intron | 25.0% |
| !!! | ATGGAAAAGTATTTAGACTT+GGG | - | chr3.4:71935020-71935039 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTGACATCTTGA+AGG | - | chr3.4:71935118-71935137 | None:intergenic | 25.0% |
| !!! | TATGGAAAAGTATTTAGACT+TGG | - | chr3.4:71935021-71935040 | None:intergenic | 25.0% |
| AATCAATCGTGTAAGACAAA+TGG | - | chr3.4:71935907-71935926 | None:intergenic | 30.0% | |
| AGAGTAGAAATCCATAATAG+CGG | - | chr3.4:71934114-71934133 | None:intergenic | 30.0% | |
| ATCGTCAAACTTAAAATGCA+AGG | + | chr3.4:71935576-71935595 | MS.gene29101:CDS | 30.0% | |
| ATTATGGATTTCTACTCTTC+CGG | + | chr3.4:71934116-71934135 | MS.gene29101:CDS | 30.0% | |
| CAAATAGAAAAAAAGAGGGA+GGG | - | chr3.4:71935284-71935303 | None:intergenic | 30.0% | |
| GCAATATCAACATAGAAATG+AGG | - | chr3.4:71934209-71934228 | None:intergenic | 30.0% | |
| TAGTCTCATTTCAAGGAATT+TGG | + | chr3.4:71934236-71934255 | MS.gene29101:intron | 30.0% | |
| ! | GATTTCGAGGGTATATTAAA+AGG | + | chr3.4:71935832-71935851 | MS.gene29101:intron | 30.0% |
| ! | TTTTGTCACTGTTACCAAAT+CGG | + | chr3.4:71934049-71934068 | MS.gene29101:CDS | 30.0% |
| !! | AGATTATTGTGATTAGTCTC+TGG | - | chr3.4:71933620-71933639 | None:intergenic | 30.0% |
| !! | CATTCTTAAGTTGATTTCGA+GGG | + | chr3.4:71935820-71935839 | MS.gene29101:intron | 30.0% |
| !!! | CTCCCTCTTTTTTTCTATTT+GGG | + | chr3.4:71935283-71935302 | MS.gene29101:intron | 30.0% |
| !!! | GTATGAGATTTTTCTAGCTT+AGG | + | chr3.4:71935089-71935108 | MS.gene29101:intron | 30.0% |
| AACATAAGAGACTCTGGATT+TGG | - | chr3.4:71933791-71933810 | None:intergenic | 35.0% | |
| AATCAACTTAAGAATGCCAC+AGG | - | chr3.4:71935816-71935835 | None:intergenic | 35.0% | |
| AATCTCATACTCCAAGAACT+TGG | - | chr3.4:71935079-71935098 | None:intergenic | 35.0% | |
| ACAGAATAGAAAGACCAAGT+TGG | + | chr3.4:71935345-71935364 | MS.gene29101:intron | 35.0% | |
| AGATAAAGTTCAACCCAACT+TGG | - | chr3.4:71935362-71935381 | None:intergenic | 35.0% | |
| ATAATAGCGGCAAAGATTTC+AGG | - | chr3.4:71934101-71934120 | None:intergenic | 35.0% | |
| ATCATGAATTGCTGTGTCTT+TGG | - | chr3.4:71934177-71934196 | None:intergenic | 35.0% | |
| ATCTCATACTCCAAGAACTT+GGG | - | chr3.4:71935078-71935097 | None:intergenic | 35.0% | |
| ATTTGCAGGGGCAATTAATA+AGG | - | chr3.4:71934784-71934803 | None:intergenic | 35.0% | |
| CAGAATAGAAAGACCAAGTT+GGG | + | chr3.4:71935346-71935365 | MS.gene29101:intron | 35.0% | |
| CCAAATAGAAAAAAAGAGGG+AGG | - | chr3.4:71935285-71935304 | None:intergenic | 35.0% | |
| TACACGTAGTTCATTACAGA+AGG | - | chr3.4:71935788-71935807 | None:intergenic | 35.0% | |
| TAGTATGCACAATGACAGAT+AGG | - | chr3.4:71935963-71935982 | None:intergenic | 35.0% | |
| TGAAACAGTTGCAATGATCA+AGG | + | chr3.4:71935171-71935190 | MS.gene29101:CDS | 35.0% | |
| TGAAATCTTTGCCGCTATTA+TGG | + | chr3.4:71934100-71934119 | MS.gene29101:CDS | 35.0% | |
| ! | GGAATTACTCGTGTTTTCTT+TGG | + | chr3.4:71934020-71934039 | MS.gene29101:intron | 35.0% |
| ! | GTGAAAATTGATTTAGCGAG+AGG | - | chr3.4:71933884-71933903 | None:intergenic | 35.0% |
| ! | TGCAATGATCAAGGAACTTT+TGG | + | chr3.4:71935180-71935199 | MS.gene29101:CDS | 35.0% |
| !! | ACATTGAAGGAGTACTAACT+AGG | + | chr3.4:71934595-71934614 | MS.gene29101:intron | 35.0% |
| !! | GCATTCTTAAGTTGATTTCG+AGG | + | chr3.4:71935819-71935838 | MS.gene29101:intron | 35.0% |
| !! | TAATGCAAACTTGTTACCTC+AGG | - | chr3.4:71935675-71935694 | None:intergenic | 35.0% |
| !! | TGTGGTTTTCTCTAGAGATA+CGG | + | chr3.4:71935551-71935570 | MS.gene29101:intron | 35.0% |
| !!! | CCTCCCTCTTTTTTTCTATT+TGG | + | chr3.4:71935282-71935301 | MS.gene29101:intron | 35.0% |
| !!! | TAGTTTTGACATCTTGAAGG+TGG | - | chr3.4:71935115-71935134 | None:intergenic | 35.0% |
| AAAAGTCCTGACCTCAATTC+AGG | + | chr3.4:71934415-71934434 | MS.gene29101:intron | 40.0% | |
| AAACATAGTCCTCCTTTGTC+CGG | - | chr3.4:71933750-71933769 | None:intergenic | 40.0% | |
| AAACCTTAGTCCACTAAGTG+GGG | - | chr3.4:71934363-71934382 | None:intergenic | 40.0% | |
| AAATACAAAGCCTGACTGGT+GGG | + | chr3.4:71934863-71934882 | MS.gene29101:intron | 40.0% | |
| AAATGGAGAAGGAAATGGTG+AGG | - | chr3.4:71933723-71933742 | None:intergenic | 40.0% | |
| AAGGAAATACAAAGCCTGAC+TGG | + | chr3.4:71934859-71934878 | MS.gene29101:intron | 40.0% | |
| ACAAATTGTTCTCGTTGCCT+GGG | + | chr3.4:71933644-71933663 | MS.gene29101:CDS | 40.0% | |
| ACAAGTCTATCGTCACAAGT+AGG | + | chr3.4:71934562-71934581 | MS.gene29101:intron | 40.0% | |
| ACTTAAGAATGCCACAGGAA+AGG | - | chr3.4:71935811-71935830 | None:intergenic | 40.0% | |
| ATAGAAAAAAAGAGGGAGGG+AGG | - | chr3.4:71935281-71935300 | None:intergenic | 40.0% | |
| ATGCTTACCTGTTTGCATAC+AGG | + | chr3.4:71935141-71935160 | MS.gene29101:intron | 40.0% | |
| CAAACCTTAGTCCACTAAGT+GGG | - | chr3.4:71934364-71934383 | None:intergenic | 40.0% | |
| CGTAGTTCATTACAGAAGGA+CGG | - | chr3.4:71935784-71935803 | None:intergenic | 40.0% | |
| GAATCATCCTGTATGCAAAC+AGG | - | chr3.4:71935151-71935170 | None:intergenic | 40.0% | |
| GAGTCTCTTATGTTTCATCC+TGG | + | chr3.4:71933797-71933816 | MS.gene29101:CDS | 40.0% | |
| GCAAGTTTCCAAGACAATGT+TGG | + | chr3.4:71935471-71935490 | MS.gene29101:intron | 40.0% | |
| GGATGAAACATAAGAGACTC+TGG | - | chr3.4:71933797-71933816 | None:intergenic | 40.0% | |
| GGCTGTAGATTTGAAAGGAA+AGG | + | chr3.4:71934840-71934859 | MS.gene29101:intron | 40.0% | |
| GGGATGGATGATTGATGAAT+GGG | + | chr3.4:71934883-71934902 | MS.gene29101:intron | 40.0% | |
| GTCGTAATCGTCTTCCTAAT+CGG | - | chr3.4:71933574-71933593 | None:intergenic | 40.0% | |
| GTGGAAAATGGAGAAGGAAA+TGG | - | chr3.4:71933728-71933747 | None:intergenic | 40.0% | |
| TACAAATTGTTCTCGTTGCC+TGG | + | chr3.4:71933643-71933662 | MS.gene29101:CDS | 40.0% | |
| TCAAACCTTAGTCCACTAAG+TGG | - | chr3.4:71934365-71934384 | None:intergenic | 40.0% | |
| TGAGAGGCTGTAGATTTGAA+AGG | + | chr3.4:71934835-71934854 | MS.gene29101:intron | 40.0% | |
| TGCCTCGATTCAAAAACCAT+TGG | + | chr3.4:71934979-71934998 | MS.gene29101:intron | 40.0% | |
| TGGGATGGATGATTGATGAA+TGG | + | chr3.4:71934882-71934901 | MS.gene29101:intron | 40.0% | |
| TGTCAACACCAACATTGTCT+TGG | - | chr3.4:71935482-71935501 | None:intergenic | 40.0% | |
| TTAGACTTGGGAGATACAAG+AGG | - | chr3.4:71935008-71935027 | None:intergenic | 40.0% | |
| TTAGGAAGACGATTACGACT+AGG | + | chr3.4:71933575-71933594 | MS.gene29101:CDS | 40.0% | |
| TTGCTGCATTTACAGGTCAA+AGG | + | chr3.4:71936115-71936134 | MS.gene29101:intron | 40.0% | |
| ! | AACTGTACAAGATGATGGTG+GGG | + | chr3.4:71935219-71935238 | MS.gene29101:CDS | 40.0% |
| ! | AATGGTTTTTGAATCGAGGC+AGG | - | chr3.4:71934980-71934999 | None:intergenic | 40.0% |
| ! | AATTGCTGTGTCTTTGGAAG+CGG | - | chr3.4:71934171-71934190 | None:intergenic | 40.0% |
| ! | ATGGTTTTTGAATCGAGGCA+GGG | - | chr3.4:71934979-71934998 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGGAACAAGAAT+TGG | + | chr3.4:71936132-71936151 | MS.gene29101:CDS | 40.0% |
| ! | CAACTGTACAAGATGATGGT+GGG | + | chr3.4:71935218-71935237 | MS.gene29101:CDS | 40.0% |
| ! | CTTTTAGTGACCCAAGTTCT+TGG | + | chr3.4:71935065-71935084 | MS.gene29101:intron | 40.0% |
| ! | TGCCAATGGTTTTTGAATCG+AGG | - | chr3.4:71934984-71935003 | None:intergenic | 40.0% |
| ! | TTTCCTTCTCCATTTTCCAC+CGG | + | chr3.4:71933728-71933747 | MS.gene29101:CDS | 40.0% |
| !! | AGGAAGAGAAAAAGGCATTG+TGG | - | chr3.4:71933697-71933716 | None:intergenic | 40.0% |
| !! | GTGATTAGTCTCTGGTTTGA+GGG | - | chr3.4:71933612-71933631 | None:intergenic | 40.0% |
| !! | GTGGTTTTCTCTAGAGATAC+GGG | + | chr3.4:71935552-71935571 | MS.gene29101:intron | 40.0% |
| !! | TGGTTTTCTCTAGAGATACG+GGG | + | chr3.4:71935553-71935572 | MS.gene29101:intron | 40.0% |
| !! | TGTGATTAGTCTCTGGTTTG+AGG | - | chr3.4:71933613-71933632 | None:intergenic | 40.0% |
| AACTACGTGTACCTTTCCTG+TGG | + | chr3.4:71935797-71935816 | MS.gene29101:intron | 45.0% | |
| AAGAGACTCTGGATTTGGAG+TGG | - | chr3.4:71933786-71933805 | None:intergenic | 45.0% | |
| ACATCCATGACAGGTTTACC+AGG | - | chr3.4:71933818-71933837 | None:intergenic | 45.0% | |
| AGCGAGAGGAGAATTCATAG+CGG | - | chr3.4:71933870-71933889 | None:intergenic | 45.0% | |
| CAAATCGGAAGATGCATCGT+GGG | + | chr3.4:71934064-71934083 | MS.gene29101:CDS | 45.0% | |
| CCACCATCATCTTGTACAGT+TGG | - | chr3.4:71935220-71935239 | None:intergenic | 45.0% | |
| CGACCAACTGTACAAGATGA+TGG | + | chr3.4:71935214-71935233 | MS.gene29101:CDS | 45.0% | |
| GAAATACAAAGCCTGACTGG+TGG | + | chr3.4:71934862-71934881 | MS.gene29101:intron | 45.0% | |
| GAGATACAAGAGGATGCCAA+TGG | - | chr3.4:71934998-71935017 | None:intergenic | 45.0% | |
| GCATTTACAGGTCAAAGGTG+TGG | + | chr3.4:71936120-71936139 | MS.gene29101:intron | 45.0% | |
| GCTGATGCATTATGTACCTG+AGG | + | chr3.4:71935656-71935675 | MS.gene29101:CDS | 45.0% | |
| GCTTGAGAGTCTAGAAAGAG+TGG | - | chr3.4:71934146-71934165 | None:intergenic | 45.0% | |
| GGTAAACCTGTCATGGATGT+TGG | + | chr3.4:71933818-71933837 | MS.gene29101:CDS | 45.0% | |
| GGTGGGGACATTGTATATTG+TGG | + | chr3.4:71935235-71935254 | MS.gene29101:CDS | 45.0% | |
| GGTGTGGAACAAGAATTGGA+TGG | + | chr3.4:71936136-71936155 | MS.gene29101:CDS | 45.0% | |
| GTAAATGCAGCAAGCAGCAT+TGG | - | chr3.4:71936108-71936127 | None:intergenic | 45.0% | |
| GTCTAGAAAGAGTGGTTCAC+CGG | - | chr3.4:71934138-71934157 | None:intergenic | 45.0% | |
| TACAGAAGGACGGTAAGTTG+AGG | - | chr3.4:71935774-71935793 | None:intergenic | 45.0% | |
| TCAGAGTCACCGAAGAACTT+GGG | - | chr3.4:71935617-71935636 | None:intergenic | 45.0% | |
| TCATCCTGGTAAACCTGTCA+TGG | + | chr3.4:71933811-71933830 | MS.gene29101:CDS | 45.0% | |
| TGCACAATGACAGATAGGTC+TGG | - | chr3.4:71935958-71935977 | None:intergenic | 45.0% | |
| TTCAGAGTCACCGAAGAACT+TGG | - | chr3.4:71935618-71935637 | None:intergenic | 45.0% | |
| ! | AAAATGCAAGGAGCGTGTAG+TGG | + | chr3.4:71935588-71935607 | MS.gene29101:CDS | 45.0% |
| ! | AGGGGTAGTGTTTTCCGATT+AGG | + | chr3.4:71933557-71933576 | MS.gene29101:CDS | 45.0% |
| ! | ATGCTGCTTGCTGCATTTAC+AGG | + | chr3.4:71936108-71936127 | MS.gene29101:intron | 45.0% |
| ! | CCAACTGTACAAGATGATGG+TGG | + | chr3.4:71935217-71935236 | MS.gene29101:CDS | 45.0% |
| ! | GAGAATTCATAGCGGAACGA+GGG | - | chr3.4:71933862-71933881 | None:intergenic | 45.0% |
| ! | TGGTTTTTGAATCGAGGCAG+GGG | - | chr3.4:71934978-71934997 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTGTGGTTGCG+AGG | - | chr3.4:71933689-71933708 | None:intergenic | 45.0% |
| !! | GAAGAGGAAGCAGCTTTAAG+TGG | + | chr3.4:71936163-71936182 | MS.gene29101:CDS | 45.0% |
| !! | GATTTGGAGTGGACTGTGTT+TGG | - | chr3.4:71933775-71933794 | None:intergenic | 45.0% |
| !!! | AAATTTATCATAATTTTTTT+AGG | + | chr3.4:71934704-71934723 | MS.gene29101:intron | 5.0% |
| AATCATCCATCCCACCAGTC+AGG | - | chr3.4:71934876-71934895 | None:intergenic | 50.0% | |
| AGAATTGGATGGCGAGGAAG+AGG | + | chr3.4:71936147-71936166 | MS.gene29101:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3.4:71933920-71933939 | None:intergenic | 50.0% | |
| AGGCAGCTGAGAGACATTGA+AGG | + | chr3.4:71934582-71934601 | MS.gene29101:intron | 50.0% | |
| CCAAATCGGAAGATGCATCG+TGG | + | chr3.4:71934063-71934082 | MS.gene29101:CDS | 50.0% | |
| CCACGATGCATCTTCCGATT+TGG | - | chr3.4:71934066-71934085 | None:intergenic | 50.0% | |
| CTCCTTTGTCCGGTGGAAAA+TGG | - | chr3.4:71933740-71933759 | None:intergenic | 50.0% | |
| CTTAGTCCACTAAGTGGGGT+CGG | - | chr3.4:71934359-71934378 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3.4:71933921-71933940 | None:intergenic | 50.0% | |
| GGAACAAGAATTGGATGGCG+AGG | + | chr3.4:71936141-71936160 | MS.gene29101:CDS | 50.0% | |
| TAGTGGCTGCCCAAGTTCTT+CGG | + | chr3.4:71935605-71935624 | MS.gene29101:CDS | 50.0% | |
| TCCTGACCTCAATTCAGGTG+CGG | + | chr3.4:71934420-71934439 | MS.gene29101:intron | 50.0% | |
| TGAGGCGGAGGAAGAGAAAA+AGG | - | chr3.4:71933705-71933724 | None:intergenic | 50.0% | |
| TGGAGAAGGAAATGGTGAGG+CGG | - | chr3.4:71933720-71933739 | None:intergenic | 50.0% | |
| TGGTTGCGAGGTTGAAACGA+CGG | - | chr3.4:71933677-71933696 | None:intergenic | 50.0% | |
| TGTCCGGTGGAAAATGGAGA+AGG | - | chr3.4:71933734-71933753 | None:intergenic | 50.0% | |
| ! | CATTTTCCACCGGACAAAGG+AGG | + | chr3.4:71933738-71933757 | MS.gene29101:CDS | 50.0% |
| ! | CTCCATTTTCCACCGGACAA+AGG | + | chr3.4:71933735-71933754 | MS.gene29101:CDS | 50.0% |
| ! | GGAGAATTCATAGCGGAACG+AGG | - | chr3.4:71933863-71933882 | None:intergenic | 50.0% |
| ! | TTCATAGCGGAACGAGGGTT+CGG | - | chr3.4:71933857-71933876 | None:intergenic | 50.0% |
| !! | TCTTCGGTGACTCTGAAGTC+AGG | + | chr3.4:71935621-71935640 | MS.gene29101:CDS | 50.0% |
| ACAAAGCCTGACTGGTGGGA+TGG | + | chr3.4:71934867-71934886 | MS.gene29101:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3.4:71934351-71934370 | None:intergenic | 55.0% | |
| AGAAGGAAATGGTGAGGCGG+AGG | - | chr3.4:71933717-71933736 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.4:71934350-71934369 | MS.gene29101:intron | 55.0% | |
| CATAGTCCTCCTTTGTCCGG+TGG | - | chr3.4:71933747-71933766 | None:intergenic | 55.0% | |
| GCGCTACCAACATCCATGAC+AGG | - | chr3.4:71933827-71933846 | None:intergenic | 55.0% | |
| GGAACGAGGGTTCGGGAAAT+CGG | - | chr3.4:71933849-71933868 | None:intergenic | 55.0% | |
| GGGAGGGAGGAGAGAACTTA+CGG | - | chr3.4:71935268-71935287 | None:intergenic | 55.0% | |
| TCCGCACCTGAATTGAGGTC+AGG | - | chr3.4:71934424-71934443 | None:intergenic | 55.0% | |
| ! | TCATAGCGGAACGAGGGTTC+GGG | - | chr3.4:71933856-71933875 | None:intergenic | 55.0% |
| !! | CGACCCCACTTAGTGGACTA+AGG | + | chr3.4:71934357-71934376 | MS.gene29101:intron | 55.0% |
| AGCCAGGATTGGGGAACTGG+GGG | + | chr3.4:71934443-71934462 | MS.gene29101:intron | 60.0% | |
| ATCCCCCAGTTCCCCAATCC+TGG | - | chr3.4:71934448-71934467 | None:intergenic | 60.0% | |
| CTCAATTCAGGTGCGGAGCC+AGG | + | chr3.4:71934427-71934446 | MS.gene29101:intron | 60.0% | |
| CTGGCTCCGCACCTGAATTG+AGG | - | chr3.4:71934429-71934448 | None:intergenic | 60.0% | |
| GAGCCAGGATTGGGGAACTG+GGG | + | chr3.4:71934442-71934461 | MS.gene29101:intron | 60.0% | |
| GGAGCCAGGATTGGGGAACT+GGG | + | chr3.4:71934441-71934460 | MS.gene29101:intron | 60.0% | |
| TCAGGTGCGGAGCCAGGATT+GGG | + | chr3.4:71934433-71934452 | MS.gene29101:intron | 60.0% | |
| TTCAGGTGCGGAGCCAGGAT+TGG | + | chr3.4:71934432-71934451 | MS.gene29101:intron | 60.0% | |
| !! | GAAACGACGGTGTTGTGCCC+AGG | - | chr3.4:71933664-71933683 | None:intergenic | 60.0% |
| CAGGTGCGGAGCCAGGATTG+GGG | + | chr3.4:71934434-71934453 | MS.gene29101:intron | 65.0% | |
| CGGAGCCAGGATTGGGGAAC+TGG | + | chr3.4:71934440-71934459 | MS.gene29101:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71933545 | 71936198 | 71933545 | ID=MS.gene29101 |
| chr3.4 | mRNA | 71933545 | 71936198 | 71933545 | ID=MS.gene29101.t1;Parent=MS.gene29101 |
| chr3.4 | exon | 71933545 | 71933911 | 71933545 | ID=MS.gene29101.t1.exon1;Parent=MS.gene29101.t1 |
| chr3.4 | CDS | 71933545 | 71933911 | 71933545 | ID=cds.MS.gene29101.t1;Parent=MS.gene29101.t1 |
| chr3.4 | exon | 71934021 | 71934196 | 71934021 | ID=MS.gene29101.t1.exon2;Parent=MS.gene29101.t1 |
| chr3.4 | CDS | 71934021 | 71934196 | 71934021 | ID=cds.MS.gene29101.t1;Parent=MS.gene29101.t1 |
| chr3.4 | exon | 71935163 | 71935266 | 71935163 | ID=MS.gene29101.t1.exon3;Parent=MS.gene29101.t1 |
| chr3.4 | CDS | 71935163 | 71935266 | 71935163 | ID=cds.MS.gene29101.t1;Parent=MS.gene29101.t1 |
| chr3.4 | exon | 71935566 | 71935677 | 71935566 | ID=MS.gene29101.t1.exon4;Parent=MS.gene29101.t1 |
| chr3.4 | CDS | 71935566 | 71935677 | 71935566 | ID=cds.MS.gene29101.t1;Parent=MS.gene29101.t1 |
| chr3.4 | exon | 71936130 | 71936198 | 71936130 | ID=MS.gene29101.t1.exon5;Parent=MS.gene29101.t1 |
| chr3.4 | CDS | 71936130 | 71936198 | 71936130 | ID=cds.MS.gene29101.t1;Parent=MS.gene29101.t1 |
| Gene Sequence |
| Protein sequence |
