AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29266

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29266.t1 MTR_1g037550 90.340 559 28 2 1 533 1 559 0.0 991
MS.gene29266.t1 MTR_1g037560 79.533 557 88 2 1 533 1 555 0.0 886
MS.gene29266.t1 MTR_4g075110 71.038 549 119 5 6 530 26 558 0.0 781
MS.gene29266.t1 MTR_7g406990 73.381 417 71 6 20 403 1 410 0.0 575
MS.gene29266.t1 MTR_8g030590 43.053 511 250 10 43 521 9 510 1.85e-130 391
MS.gene29266.t1 MTR_8g098435 41.961 510 252 10 43 521 9 505 2.01e-128 385
MS.gene29266.t1 MTR_7g033570 39.130 506 267 7 40 521 6 494 1.33e-125 377
MS.gene29266.t1 MTR_7g033580 39.448 507 264 9 40 521 6 494 5.06e-124 373
MS.gene29266.t1 MTR_8g088470 37.376 503 275 6 43 521 5 491 3.45e-120 363
MS.gene29266.t1 MTR_5g070010 40.711 506 251 9 50 521 18 508 7.76e-117 355
MS.gene29266.t1 MTR_1g035670 36.346 509 291 6 38 522 4 503 1.57e-113 346
MS.gene29266.t1 MTR_1g035760 37.195 492 287 9 38 522 4 480 8.55e-112 341
MS.gene29266.t1 MTR_6g004600 35.714 518 283 11 44 521 8 515 9.80e-112 342
MS.gene29266.t1 MTR_3g463060 38.767 503 230 11 68 528 40 506 3.26e-111 340
MS.gene29266.t1 MTR_1g035750 36.240 516 285 7 38 522 4 506 5.22e-111 340
MS.gene29266.t1 MTR_1g036130 36.187 514 289 9 38 522 4 507 1.81e-110 338
MS.gene29266.t1 MTR_1g035790 37.380 519 281 14 32 522 1 503 8.44e-110 337
MS.gene29266.t1 MTR_1g036200 35.771 506 280 10 47 522 10 500 6.35e-108 332
MS.gene29266.t1 MTR_6g004590 34.095 525 302 9 31 521 1 515 9.89e-106 326
MS.gene29266.t1 MTR_7g088330 39.453 512 261 16 43 521 13 508 1.43e-105 326
MS.gene29266.t1 MTR_1g035830 35.769 520 282 11 38 521 4 507 3.43e-104 322
MS.gene29266.t1 MTR_6g004670 35.098 510 289 10 41 521 9 505 9.08e-103 318
MS.gene29266.t1 MTR_1g050362 35.630 508 285 11 47 522 10 507 1.52e-102 318
MS.gene29266.t1 MTR_1g036010 35.078 516 291 12 38 521 4 507 4.45e-101 314
MS.gene29266.t1 MTR_6g004630 35.984 503 267 14 53 521 22 503 1.62e-100 312
MS.gene29266.t1 MTR_1g035940 35.714 518 285 13 38 521 4 507 2.58e-100 312
MS.gene29266.t1 MTR_7g096340 37.908 459 227 10 96 522 71 503 3.51e-100 311
MS.gene29266.t1 MTR_4g119660 36.882 526 271 13 43 522 6 516 1.01e-99 311
MS.gene29266.t1 MTR_1g036270 35.673 513 281 13 46 521 11 511 1.97e-99 310
MS.gene29266.t1 MTR_1g035580 34.857 525 280 13 32 522 1 497 2.49e-99 309
MS.gene29266.t1 MTR_5g019140 36.053 527 275 14 43 522 20 531 6.09e-99 309
MS.gene29266.t1 MTR_4g054920 39.238 446 213 10 113 521 92 516 7.96e-97 303
MS.gene29266.t1 MTR_1g035800 34.690 516 296 9 39 521 5 512 4.79e-96 301
MS.gene29266.t1 MTR_2g086040 39.679 436 212 8 109 518 85 495 7.76e-96 300
MS.gene29266.t1 MTR_3g080580 39.462 446 220 10 112 521 86 517 4.08e-95 299
MS.gene29266.t1 MTR_7g096320 36.245 458 234 8 96 521 72 503 2.38e-93 294
MS.gene29266.t1 MTR_8g035780 36.701 485 263 13 68 523 43 512 8.05e-93 293
MS.gene29266.t1 MTR_6g004610 34.120 466 265 9 83 520 11 462 2.74e-92 290
MS.gene29266.t1 MTR_1g070345 37.644 433 241 9 112 525 86 508 1.03e-89 285
MS.gene29266.t1 MTR_1g102220 36.399 511 275 18 41 521 16 506 3.57e-89 283
MS.gene29266.t1 MTR_8g035810 36.465 447 247 10 98 517 70 506 1.20e-87 279
MS.gene29266.t1 MTR_8g035860 37.819 431 231 11 112 514 81 502 1.38e-87 279
MS.gene29266.t1 MTR_1g060550 37.613 444 219 12 112 521 93 512 3.89e-86 275
MS.gene29266.t1 MTR_8g035820 36.629 445 242 12 98 514 70 502 1.41e-85 274
MS.gene29266.t1 MTR_8g035760 34.511 481 270 13 68 521 49 511 3.21e-85 273
MS.gene29266.t1 MTR_1g070365 36.049 491 271 15 58 521 30 504 1.97e-84 271
MS.gene29266.t1 MTR_7g029275 34.286 525 294 13 28 521 4 508 8.36e-83 267
MS.gene29266.t1 MTR_8g035680 34.855 482 258 16 68 516 49 507 1.12e-82 266
MS.gene29266.t1 MTR_1g035860 32.360 445 268 6 43 463 15 450 5.42e-78 254
MS.gene29266.t1 MTR_8g035810 35.969 392 215 9 98 463 70 451 2.24e-72 238
MS.gene29266.t1 MTR_1g069715 33.333 426 234 12 119 509 2 412 2.78e-68 233
MS.gene29266.t1 MTR_1g102210 36.646 322 190 8 203 521 51 361 7.92e-62 207
MS.gene29266.t1 MTR_8g035680 34.140 372 195 12 178 516 6 360 9.55e-61 204
MS.gene29266.t1 MTR_4g012320 49.479 192 89 3 330 520 38 222 2.19e-58 194
MS.gene29266.t1 MTR_8g035810 32.716 324 183 8 98 395 70 384 1.81e-46 167
MS.gene29266.t1 MTR_1g070370 37.302 252 128 4 204 439 5 242 1.68e-40 147
MS.gene29266.t1 MTR_7g079440 25.108 462 302 19 96 533 219 660 9.39e-33 133
MS.gene29266.t1 MTR_5g009110 24.569 464 288 17 112 522 117 571 6.22e-27 115
MS.gene29266.t1 MTR_8g035790 51.485 101 45 3 425 523 1 99 6.85e-26 102
MS.gene29266.t1 MTR_8g046580 49.505 101 50 1 396 496 193 292 1.67e-25 107
MS.gene29266.t1 MTR_8g046580 30.216 139 83 2 119 257 62 186 2.79e-17 83.2
MS.gene29266.t1 MTR_5g009110 24.186 430 267 14 145 522 1 423 4.93e-24 105
MS.gene29266.t1 MTR_2g061750 33.690 187 102 5 110 279 13 194 9.79e-24 99.4
MS.gene29266.t1 MTR_2g061740 33.690 187 102 5 110 279 13 194 1.20e-23 99.4
MS.gene29266.t1 MTR_6g084040 34.463 177 92 7 46 219 11 166 3.96e-23 96.7
MS.gene29266.t1 MTR_1g062190 22.864 433 300 14 110 521 120 539 1.77e-21 98.2
MS.gene29266.t1 MTR_7g006900 20.657 426 290 11 115 519 72 470 5.05e-20 93.6
MS.gene29266.t1 MTR_7g079440 24.054 370 241 16 96 444 219 569 5.20e-20 94.0
MS.gene29266.t1 MTR_2g055430 23.251 443 287 13 105 520 101 517 2.93e-19 91.3
MS.gene29266.t1 MTR_8g042000 23.028 469 311 15 78 520 79 523 1.78e-18 89.0
MS.gene29266.t1 MTR_2g055470 23.025 443 288 15 105 520 101 517 8.63e-18 86.7
MS.gene29266.t1 MTR_5g095260 25.245 408 259 14 110 494 85 469 2.04e-17 85.5
MS.gene29266.t1 MTR_1g023040 42.069 145 52 6 215 355 13 129 4.26e-17 79.0
MS.gene29266.t1 MTR_2g072270 24.365 394 259 10 144 516 143 518 4.72e-17 84.3
MS.gene29266.t1 MTR_6g017325 21.324 408 249 12 145 519 137 505 9.52e-17 83.6
MS.gene29266.t1 MTR_2g023680 22.323 439 296 12 105 520 101 517 2.50e-16 82.0
MS.gene29266.t1 MTR_2g072260 23.656 465 307 16 83 520 67 510 3.75e-16 81.6
MS.gene29266.t1 MTR_3g436540 22.287 516 309 19 31 494 2 477 6.20e-16 80.9
MS.gene29266.t1 MTR_2g072400 23.077 442 290 16 105 520 98 515 7.94e-16 80.5
MS.gene29266.t1 MTR_2g072340 22.676 441 293 14 105 520 98 515 8.37e-16 80.5
MS.gene29266.t1 MTR_5g070920 29.762 168 114 3 349 516 327 490 9.26e-16 80.5
MS.gene29266.t1 MTR_5g095290 24.324 407 263 15 110 494 85 468 1.09e-15 80.1
MS.gene29266.t1 MTR_2g010290 25.735 272 183 8 261 521 269 532 1.25e-15 80.1
MS.gene29266.t1 MTR_7g012330 23.873 377 218 15 147 487 117 460 1.41e-15 79.7
MS.gene29266.t1 MTR_0171s0030 24.552 391 261 12 147 514 31 410 1.74e-15 79.0
MS.gene29266.t1 MTR_0171s0020 23.544 412 283 13 108 497 78 479 2.11e-15 79.3
MS.gene29266.t1 MTR_8g104100 34.109 129 83 2 372 500 109 235 2.44e-15 76.6
MS.gene29266.t1 MTR_2g062670 36.686 169 93 5 192 347 56 223 4.88e-15 78.2
MS.gene29266.t1 MTR_2g062670 35.669 157 72 6 192 347 272 400 3.27e-12 69.3
MS.gene29266.t1 MTR_2g010250 30.319 188 119 6 338 521 326 505 7.14e-15 77.8
MS.gene29266.t1 MTR_3g076560 22.398 442 274 15 112 517 96 504 8.79e-15 77.4
MS.gene29266.t1 MTR_5g034900 29.255 188 121 5 337 521 339 517 1.15e-14 77.0
MS.gene29266.t1 MTR_5g026520 23.630 292 177 7 264 521 229 508 1.78e-14 76.3
MS.gene29266.t1 MTR_5g070690 27.660 188 122 4 349 526 326 509 1.83e-14 76.3
MS.gene29266.t1 MTR_5g070800 27.660 188 122 4 349 526 326 509 1.83e-14 76.3
MS.gene29266.t1 MTR_2g073440 27.979 193 126 4 302 494 269 448 1.84e-14 76.3
MS.gene29266.t1 MTR_0171s0010 23.571 420 275 14 105 494 75 478 2.04e-14 76.3
MS.gene29266.t1 MTR_1g037370 29.444 180 113 5 308 475 266 443 2.06e-14 76.3
MS.gene29266.t1 MTR_8g080520 21.951 492 327 18 57 521 64 525 2.19e-14 76.3
MS.gene29266.t1 MTR_7g075610 26.282 156 102 3 341 496 331 473 2.38e-14 75.9
MS.gene29266.t1 MTR_6g042540 23.764 526 305 20 35 500 3 492 2.84e-14 75.9
MS.gene29266.t1 MTR_2g073480 27.979 193 126 4 302 494 202 381 2.95e-14 75.1
MS.gene29266.t1 MTR_1g101040 21.092 403 277 12 133 516 130 510 3.72e-14 75.5
MS.gene29266.t1 MTR_5g095230 21.477 447 290 15 105 520 97 513 4.56e-14 75.1
MS.gene29266.t1 MTR_6g008650 33.582 134 85 3 369 500 368 499 5.48e-14 75.1
MS.gene29266.t1 MTR_4g031820 23.907 389 240 13 144 513 147 498 5.64e-14 74.7
MS.gene29266.t1 MTR_6g042610 23.062 529 306 20 35 500 3 493 7.17e-14 74.7
MS.gene29266.t1 MTR_3g467290 22.068 503 313 19 16 471 8 478 7.20e-14 74.7
MS.gene29266.t1 MTR_4g031820 22.807 399 254 13 144 513 147 520 8.76e-14 74.3
MS.gene29266.t1 MTR_5g070830 25.188 266 174 9 269 516 343 601 1.00e-13 74.3
MS.gene29266.t1 MTR_8g098565 29.787 188 120 5 339 521 326 506 1.01e-13 73.9
MS.gene29266.t1 MTR_6g008500 29.600 125 86 2 369 492 378 501 1.05e-13 73.9
MS.gene29266.t1 MTR_2g073420 27.556 225 140 8 278 487 253 469 1.05e-13 73.9
MS.gene29266.t1 MTR_6g008640 24.632 272 180 9 250 500 230 497 1.10e-13 73.9
MS.gene29266.t1 MTR_5g056720 25.000 260 166 10 269 520 176 414 1.30e-13 73.2
MS.gene29266.t1 MTR_8g104030 24.473 237 158 7 269 487 8 241 1.35e-13 72.0
MS.gene29266.t1 MTR_1g085680 22.197 446 286 15 105 519 99 514 1.37e-13 73.6
MS.gene29266.t1 MTR_2g072250 21.700 447 289 13 105 520 97 513 1.93e-13 73.2
MS.gene29266.t1 MTR_3g057910 25.207 242 162 6 282 523 273 495 2.95e-13 72.4
MS.gene29266.t1 MTR_8g042040 21.429 434 289 13 105 520 107 506 3.21e-13 72.4
MS.gene29266.t1 MTR_8g042060 20.776 438 304 11 105 520 107 523 3.22e-13 72.4
MS.gene29266.t1 MTR_5g009110 24.839 310 194 12 145 422 1 303 3.44e-13 70.9
MS.gene29266.t1 MTR_6g008530 25.794 252 146 9 269 492 257 495 3.57e-13 72.4
MS.gene29266.t1 MTR_5g094550 21.973 223 161 3 272 494 259 468 4.84e-13 72.0
MS.gene29266.t1 MTR_6g008430 22.957 257 171 6 263 500 244 492 5.51e-13 71.6
MS.gene29266.t1 MTR_5g070710 27.381 168 118 3 349 516 325 488 7.17e-13 71.2
MS.gene29266.t1 MTR_7g098550 20.046 434 295 7 105 520 97 496 9.30e-13 70.9
MS.gene29266.t1 MTR_6g084900 28.667 150 93 4 339 487 92 228 1.02e-12 68.9
MS.gene29266.t1 MTR_1g055325 31.897 116 77 2 372 487 366 479 1.09e-12 70.9
MS.gene29266.t1 MTR_8g027040 24.436 266 171 8 275 521 291 545 1.37e-12 70.5
MS.gene29266.t1 MTR_6g084770 21.957 419 254 15 110 487 80 466 1.57e-12 70.1
MS.gene29266.t1 MTR_3g025230 21.462 424 267 14 147 533 114 508 1.64e-12 70.1
MS.gene29266.t1 MTR_4g088160 28.994 169 97 6 334 494 321 474 1.86e-12 70.1
MS.gene29266.t1 MTR_0022s0290 25.681 257 138 8 269 490 242 480 1.91e-12 70.1
MS.gene29266.t1 MTR_4g088425 23.529 289 184 9 263 527 232 507 2.51e-12 69.7
MS.gene29266.t1 MTR_2g450040 31.447 159 99 6 350 500 334 490 2.56e-12 69.7
MS.gene29266.t1 MTR_5g070850 21.961 255 161 4 269 497 233 475 2.85e-12 69.3
MS.gene29266.t1 MTR_4g102280 23.427 286 190 10 264 528 239 516 3.11e-12 69.3
MS.gene29266.t1 MTR_3g014880 23.404 282 173 8 250 500 231 500 3.41e-12 69.3
MS.gene29266.t1 MTR_5g070973 27.211 147 103 3 370 516 20 162 3.53e-12 65.5
MS.gene29266.t1 MTR_2g061910 40.244 82 49 0 112 193 72 153 3.82e-12 65.1
MS.gene29266.t1 MTR_3g058220 22.967 418 257 19 112 494 82 469 3.90e-12 68.9
MS.gene29266.t1 MTR_5g019010 22.103 466 304 19 57 491 31 468 3.92e-12 68.9
MS.gene29266.t1 MTR_1g091010 23.173 479 319 15 44 497 11 465 4.02e-12 68.9
MS.gene29266.t1 MTR_7g092620 22.991 448 279 13 108 514 75 497 4.49e-12 68.9
MS.gene29266.t1 MTR_5g470730 33.000 100 67 0 349 448 328 427 5.25e-12 68.2
MS.gene29266.t1 MTR_3g436390 30.952 126 84 2 371 494 346 470 5.34e-12 68.6
MS.gene29266.t1 MTR_5g021390 25.103 243 152 8 269 487 238 474 6.37e-12 68.6
MS.gene29266.t1 MTR_7g075580 24.516 155 104 3 336 490 325 466 6.44e-12 68.2
MS.gene29266.t1 MTR_3g024520 20.991 424 269 14 147 533 114 508 6.97e-12 68.2
MS.gene29266.t1 MTR_6g008600 23.600 250 153 5 269 492 256 493 7.27e-12 68.2
MS.gene29266.t1 MTR_7g098550 20.136 442 293 9 105 520 97 504 7.34e-12 68.2
MS.gene29266.t1 MTR_4g104570 28.758 153 96 3 339 491 26 165 7.36e-12 65.1
MS.gene29266.t1 MTR_3g025260 20.690 261 158 7 262 491 229 471 7.75e-12 68.2
MS.gene29266.t1 MTR_6g022450 29.091 165 113 3 367 528 353 516 9.07e-12 67.8
MS.gene29266.t1 MTR_2g061760 34.653 101 63 2 181 279 1 100 1.14e-11 62.0
MS.gene29266.t1 MTR_5g070700 23.129 441 272 15 112 516 82 491 1.53e-11 67.0
MS.gene29266.t1 MTR_4g089030 21.053 513 324 20 25 494 11 485 1.63e-11 67.0
MS.gene29266.t1 MTR_8g063280 22.901 262 164 8 288 521 247 498 1.63e-11 67.0
MS.gene29266.t1 MTR_3g058110 21.728 405 280 12 112 494 84 473 2.40e-11 66.6
MS.gene29266.t1 MTR_4g018800 22.756 479 284 18 67 492 46 491 2.60e-11 66.6
MS.gene29266.t1 MTR_4g104550 22.760 413 268 11 106 490 67 456 2.65e-11 66.2
MS.gene29266.t1 MTR_4g048580 21.158 449 287 15 83 494 50 468 3.75e-11 65.9
MS.gene29266.t1 MTR_8g042060 27.333 150 107 2 371 520 340 487 4.15e-11 65.9
MS.gene29266.t1 MTR_1g091023 25.328 229 148 8 273 497 257 466 4.51e-11 65.5
MS.gene29266.t1 MTR_4g062500 29.231 130 87 3 372 498 357 484 5.77e-11 65.5
MS.gene29266.t1 MTR_8g468780 22.768 448 279 14 108 514 7 428 8.27e-11 64.7
MS.gene29266.t1 MTR_1g023730 22.251 391 235 12 147 494 115 479 9.14e-11 64.7
MS.gene29266.t1 MTR_4g104540 28.758 153 96 3 339 491 257 396 9.36e-11 64.3
MS.gene29266.t1 MTR_8g012590 23.129 294 193 9 256 528 224 505 9.91e-11 64.7
MS.gene29266.t1 MTR_8g012585 25.301 166 119 3 369 530 294 458 9.92e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29266.t1 AT5G23190 61.525 551 179 5 6 529 4 548 0.0 694
MS.gene29266.t1 AT5G08250 61.121 553 175 7 7 529 6 548 0.0 688
MS.gene29266.t1 AT5G08250 63.895 493 138 7 67 529 4 486 0.0 644
MS.gene29266.t1 AT1G24540 41.935 527 264 9 27 521 4 520 9.70e-148 434
MS.gene29266.t1 AT3G26125 42.510 494 245 7 66 525 48 536 1.71e-139 414
MS.gene29266.t1 AT1G13140 39.518 539 285 10 18 527 5 531 5.79e-136 405
MS.gene29266.t1 AT1G63710 42.829 509 251 9 43 521 9 507 4.41e-132 394
MS.gene29266.t1 AT1G13140 40.430 512 292 9 18 527 5 505 7.60e-132 393
MS.gene29266.t1 AT1G13150 40.854 492 256 7 62 525 37 521 1.32e-130 391
MS.gene29266.t1 AT1G01600 41.617 507 258 8 58 532 24 524 2.65e-126 380
MS.gene29266.t1 AT4G00360 40.873 504 260 9 58 530 24 520 2.70e-123 373
MS.gene29266.t1 AT2G45970 41.420 507 264 11 43 521 9 510 5.55e-122 369
MS.gene29266.t1 AT5G58860 39.729 516 257 8 44 523 13 510 1.69e-119 362
MS.gene29266.t1 AT4G39490 38.298 517 284 8 38 522 4 517 3.97e-119 361
MS.gene29266.t1 AT2G23180 37.428 521 281 9 38 523 4 514 9.08e-116 352
MS.gene29266.t1 AT4G39480 37.791 516 285 9 38 522 4 514 4.53e-108 332
MS.gene29266.t1 AT2G21910 35.968 506 299 9 38 521 4 506 1.27e-106 328
MS.gene29266.t1 AT1G57750 36.192 478 286 8 59 522 25 497 1.43e-104 323
MS.gene29266.t1 AT5G52320 34.433 485 292 9 55 520 24 501 4.39e-103 319
MS.gene29266.t1 AT1G69500 37.406 532 269 13 43 522 5 524 1.48e-102 318
MS.gene29266.t1 AT5G52320 34.583 480 288 9 55 515 24 496 5.31e-102 316
MS.gene29266.t1 AT1G34540 38.664 494 252 12 58 521 25 497 2.74e-101 314
MS.gene29266.t1 AT1G65340 33.898 472 294 7 64 520 34 502 5.89e-101 313
MS.gene29266.t1 AT1G47620 33.402 485 284 7 66 522 43 516 1.32e-100 313
MS.gene29266.t1 AT4G32170 33.333 504 314 7 38 522 4 504 1.62e-100 313
MS.gene29266.t1 AT3G56630 38.229 497 253 14 57 521 24 498 7.83e-100 310
MS.gene29266.t1 AT4G39500 33.786 515 304 11 36 522 12 517 2.29e-97 305
MS.gene29266.t1 AT4G39510 32.871 505 317 8 38 522 4 506 5.48e-95 298
MS.gene29266.t1 AT5G63450 40.416 433 227 9 112 523 84 506 9.24e-94 295
MS.gene29266.t1 AT5G63450 40.416 433 227 9 112 523 142 564 3.47e-93 295
MS.gene29266.t1 AT2G45510 35.928 501 280 12 41 514 15 501 9.48e-92 290
MS.gene29266.t1 AT3G48520 39.775 445 224 9 104 522 74 500 2.88e-91 288
MS.gene29266.t1 AT4G39500 33.824 476 281 9 72 522 1 467 1.57e-90 285
MS.gene29266.t1 AT2G44890 38.514 444 234 10 98 514 70 501 1.69e-88 281
MS.gene29266.t1 AT2G27690 36.712 444 228 8 109 521 73 494 1.92e-86 276
MS.gene29266.t1 AT2G44890 37.162 444 222 11 98 514 70 483 4.46e-81 262
MS.gene29266.t1 AT5G02900 31.176 510 295 12 37 522 3 480 8.48e-79 255
MS.gene29266.t1 AT1G57750 32.861 423 265 8 48 456 14 431 2.09e-78 253
MS.gene29266.t1 AT3G01900 32.577 485 294 12 54 521 22 490 1.80e-77 252
MS.gene29266.t1 AT1G31800 23.937 447 304 16 96 522 140 570 2.30e-28 119
MS.gene29266.t1 AT3G53130 23.733 434 295 16 110 521 120 539 1.07e-22 102
MS.gene29266.t1 AT4G15110 23.810 462 295 17 112 522 124 579 1.18e-22 102
MS.gene29266.t1 AT4G13290 25.134 374 224 11 147 494 115 458 9.53e-20 92.8
MS.gene29266.t1 AT4G13310 24.518 363 242 10 147 491 114 462 1.47e-18 89.0
MS.gene29266.t1 AT1G66030 29.940 167 98 4 38 194 4 161 6.42e-18 81.6
MS.gene29266.t1 AT3G48270 23.284 408 265 12 106 490 70 452 2.17e-17 85.5
MS.gene29266.t1 AT1G33730 26.953 256 150 7 263 494 97 339 5.98e-17 83.2
MS.gene29266.t1 AT1G33730 26.953 256 150 7 263 494 97 339 5.98e-17 83.2
MS.gene29266.t1 AT3G48300 22.090 421 268 13 106 497 68 457 6.53e-17 84.0
MS.gene29266.t1 AT3G48300 22.090 421 268 13 106 497 70 459 6.58e-17 84.0
MS.gene29266.t1 AT3G48310 22.378 429 259 16 106 498 71 461 7.27e-17 84.0
MS.gene29266.t1 AT2G26710 23.843 432 261 15 130 525 120 519 7.44e-17 84.0
MS.gene29266.t1 AT2G45570 23.430 414 278 13 106 494 77 476 1.45e-16 82.8
MS.gene29266.t1 AT4G12300 25.098 255 168 8 260 498 236 483 5.55e-16 81.3
MS.gene29266.t1 AT2G30770 23.934 422 259 19 106 494 72 464 6.77e-16 80.9
MS.gene29266.t1 AT1G64930 27.419 186 120 4 334 515 328 502 8.52e-16 80.5
MS.gene29266.t1 AT5G38450 29.530 149 100 2 371 519 371 514 1.17e-15 80.1
MS.gene29266.t1 AT1G64940 26.486 185 123 3 334 516 330 503 1.89e-15 79.3
MS.gene29266.t1 AT1G33720 26.562 256 151 8 263 494 233 475 2.10e-15 79.3
MS.gene29266.t1 AT1G33720 26.562 256 151 8 263 494 101 343 2.29e-15 78.6
MS.gene29266.t1 AT1G33720 26.562 256 151 8 263 494 101 343 2.29e-15 78.6
MS.gene29266.t1 AT1G33720 26.562 256 151 8 263 494 101 343 2.29e-15 78.6
MS.gene29266.t1 AT3G14620 24.000 425 287 15 105 513 103 507 2.49e-15 79.0
MS.gene29266.t1 AT3G48290 22.414 406 271 9 106 490 72 454 3.30e-15 78.6
MS.gene29266.t1 AT3G48280 23.077 364 235 9 154 496 119 458 4.23e-15 78.2
MS.gene29266.t1 AT2G42250 27.570 214 135 4 294 500 287 487 1.05e-14 77.0
MS.gene29266.t1 AT1G67110 27.517 149 103 2 371 519 365 508 1.14e-14 77.0
MS.gene29266.t1 AT4G12320 24.016 254 173 7 261 498 236 485 5.01e-14 75.1
MS.gene29266.t1 AT4G37370 22.343 367 225 12 149 487 117 451 5.57e-14 74.7
MS.gene29266.t1 AT1G64950 25.714 280 179 9 264 516 225 502 5.61e-14 74.7
MS.gene29266.t1 AT1G01190 25.475 263 172 8 266 521 291 536 6.92e-14 74.7
MS.gene29266.t1 AT1G01190 25.475 263 172 8 266 521 286 531 8.53e-14 74.3
MS.gene29266.t1 AT4G39950 22.004 559 316 21 7 497 39 545 1.03e-13 74.3
MS.gene29266.t1 AT5G24950 31.159 138 93 2 355 491 325 461 1.28e-13 73.6
MS.gene29266.t1 AT2G46950 21.789 436 263 15 121 518 172 567 1.56e-13 73.6
MS.gene29266.t1 AT5G25120 21.158 501 309 19 40 497 7 464 1.69e-13 73.2
MS.gene29266.t1 AT4G12310 23.904 251 171 7 264 498 241 487 1.87e-13 73.2
MS.gene29266.t1 AT5G25180 20.968 434 270 13 106 500 68 467 1.93e-13 73.2
MS.gene29266.t1 AT4G39950 21.661 554 315 19 12 497 3 505 1.94e-13 73.2
MS.gene29266.t1 AT5G07990 24.691 243 147 10 269 487 233 463 2.42e-13 72.8
MS.gene29266.t1 AT2G46960 19.585 434 313 12 105 519 99 515 3.17e-13 72.4
MS.gene29266.t1 AT3G48290 21.281 437 264 11 106 490 72 480 4.78e-13 72.0
MS.gene29266.t1 AT2G45550 24.490 196 135 3 299 494 293 475 6.01e-13 71.6
MS.gene29266.t1 AT1G12740 27.068 266 171 8 261 523 227 472 6.72e-13 71.2
MS.gene29266.t1 AT1G12740 27.068 266 171 8 261 523 233 478 7.27e-13 71.2
MS.gene29266.t1 AT5G25140 21.277 423 264 14 112 497 74 464 1.13e-12 70.9
MS.gene29266.t1 AT2G22330 27.149 221 131 9 269 469 292 502 1.62e-12 70.5
MS.gene29266.t1 AT2G46660 25.510 196 128 6 332 521 345 528 1.73e-12 70.1
MS.gene29266.t1 AT2G22330 27.391 230 119 9 269 469 269 479 1.96e-12 70.1
MS.gene29266.t1 AT1G64900 30.065 153 101 4 375 522 354 505 2.54e-12 69.7
MS.gene29266.t1 AT1G33720 26.708 161 105 3 334 494 221 368 2.69e-12 69.3
MS.gene29266.t1 AT2G45560 30.645 124 84 2 371 494 354 475 2.76e-12 69.7
MS.gene29266.t1 AT4G31950 26.038 265 163 11 269 507 236 493 2.96e-12 69.3
MS.gene29266.t1 AT2G12190 28.313 166 114 3 355 516 340 504 3.44e-12 69.3
MS.gene29266.t1 AT5G06900 26.154 260 146 10 260 494 227 465 4.16e-12 68.9
MS.gene29266.t1 AT5G25130 20.746 429 271 13 106 497 68 464 4.28e-12 68.9
MS.gene29266.t1 AT3G25180 28.682 129 90 2 372 500 357 483 5.00e-12 68.9
MS.gene29266.t1 AT2G27000 22.826 368 220 15 192 522 167 507 5.40e-12 68.6
MS.gene29266.t1 AT2G46960 19.471 416 299 12 123 519 1 399 5.91e-12 68.2
MS.gene29266.t1 AT4G13770 29.839 124 86 1 371 494 345 467 7.61e-12 68.2
MS.gene29266.t1 AT1G13080 24.479 384 219 15 147 490 113 465 7.61e-12 68.2
MS.gene29266.t1 AT1G16410 21.895 475 304 16 63 494 48 498 8.02e-12 68.2
MS.gene29266.t1 AT3G48320 21.905 420 260 13 111 497 76 460 9.23e-12 67.8
MS.gene29266.t1 AT1G11610 21.002 419 267 14 106 490 72 460 1.01e-11 67.8
MS.gene29266.t1 AT1G11610 21.002 419 267 14 106 490 72 460 1.10e-11 67.8
MS.gene29266.t1 AT4G22690 23.132 281 192 9 264 527 282 555 1.12e-11 67.8
MS.gene29266.t1 AT3G26830 22.000 350 217 11 154 471 117 442 1.21e-11 67.4
MS.gene29266.t1 AT1G79370 24.044 366 230 13 149 475 127 483 1.22e-11 67.8
MS.gene29266.t1 AT5G24910 26.316 152 110 2 370 521 383 532 1.40e-11 67.4
MS.gene29266.t1 AT4G22710 23.132 281 192 9 264 527 251 524 2.41e-11 66.6
MS.gene29266.t1 AT3G28740 21.798 367 227 14 149 487 126 460 2.55e-11 66.6
MS.gene29266.t1 AT1G12740 25.830 271 174 8 261 523 227 478 3.60e-11 65.9
MS.gene29266.t1 AT3G20120 27.727 220 128 6 270 476 259 460 3.68e-11 65.9
MS.gene29266.t1 AT3G03470 29.016 193 118 5 338 521 327 509 6.36e-11 65.1
MS.gene29266.t1 AT4G31970 24.111 253 165 10 269 500 247 493 8.30e-11 65.1
MS.gene29266.t1 AT3G20120 26.437 261 158 8 270 515 123 364 9.76e-11 64.3
MS.gene29266.t1 AT3G20120 26.437 261 158 8 270 515 123 364 9.76e-11 64.3
MS.gene29266.t1 AT3G20120 26.437 261 158 8 270 515 123 364 9.76e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTAGTTAACCATCTTTC+TGG 0.171882 1.1:-22559850 None:intergenic
TTGATGAATGTTTGAGATTT+AGG 0.206836 1.1:+22558890 MS.gene29266:CDS
CAATAATGATTTCTATGATT+TGG 0.221252 1.1:-22557847 None:intergenic
ATTGAAAGCAGTGAATTTAT+AGG 0.231991 1.1:-22559896 None:intergenic
GCTCTTGCAAAAGGTATTTC+AGG 0.272239 1.1:-22558433 None:intergenic
TGTTTGAGCTTGTGAATAAT+AGG 0.273388 1.1:+22558275 MS.gene29266:CDS
AATTTGCTGATAGTGTTATA+AGG 0.296272 1.1:+22558581 MS.gene29266:CDS
AATTTCTTTGGAACATGATA+TGG 0.298513 1.1:+22558618 MS.gene29266:CDS
AAGAAAGAAGGAAATTTCTT+TGG 0.299457 1.1:+22558606 MS.gene29266:CDS
TGAAAATGTGAGGTTGAAAT+TGG 0.302144 1.1:-22557753 None:intergenic
AAAGAAAGCTTAGGAACAAT+AGG 0.317508 1.1:-22560024 None:intergenic
GATACACTTAAACATCAAAA+TGG 0.321074 1.1:+22558001 MS.gene29266:CDS
CTAACCAATTGGCCTGTCTT+TGG 0.325235 1.1:+22557923 MS.gene29266:CDS
TCTTTGAAGAAGTTTCCTTT+AGG 0.328907 1.1:-22558127 None:intergenic
AGTTTCATTCAACAAAGTTT+AGG 0.332565 1.1:+22558233 MS.gene29266:CDS
GGTTAGGCCATGATGTTTCT+TGG 0.338321 1.1:-22557906 None:intergenic
AAATATTAGAAGAGATTTGC+AGG 0.338808 1.1:+22558830 MS.gene29266:CDS
TATAAATTCACTGCTTTCAA+TGG 0.342401 1.1:+22559898 MS.gene29266:CDS
CTTTGAAGAAGTTTCCTTTA+GGG 0.351456 1.1:-22558126 None:intergenic
GATATATGCAATTTATTCAA+TGG 0.353925 1.1:+22559783 MS.gene29266:CDS
CATATTTCGTTACCATGTTA+AGG 0.358133 1.1:+22559987 MS.gene29266:CDS
ATTATATCCTTCTGTTCCTA+TGG 0.369772 1.1:+22558969 MS.gene29266:CDS
GTCAGAGGAGATTAAGAAGA+TGG 0.375455 1.1:+22558912 MS.gene29266:CDS
AGATTCATCTTTGAAGAAAT+CGG 0.383921 1.1:+22558312 MS.gene29266:CDS
TGGGAAGAATGGAAAACATA+TGG 0.389219 1.1:+22559803 MS.gene29266:CDS
GAAATTGGAAGTGTTAGTTT+TGG 0.406284 1.1:-22557738 None:intergenic
AGAAGATGTTCTAAATTATG+AGG 0.409229 1.1:-22558082 None:intergenic
GACACAGTTTCTGATTTACT+TGG 0.417057 1.1:+22558148 MS.gene29266:CDS
ATGCTACCTTCCTTAATCAT+AGG 0.418783 1.1:+22557947 MS.gene29266:CDS
AATGGAACCTTTAGATTCAA+AGG 0.428940 1.1:+22558019 MS.gene29266:CDS
TTGTCGCGCCAGTTTGTGTA+TGG 0.430201 1.1:+22558491 MS.gene29266:CDS
CAAAGACAGGCCAATTGGTT+AGG 0.430962 1.1:-22557922 None:intergenic
GAGGTTTCTTAACTTAGGTA+TGG 0.436495 1.1:+22558522 MS.gene29266:CDS
CATTCCAAAGACAGGCCAAT+TGG 0.440500 1.1:-22557927 None:intergenic
ATTTGTTAACCGTGTTTATG+AGG 0.441978 1.1:+22558662 MS.gene29266:CDS
ATTTGCTGATAGTGTTATAA+GGG 0.444302 1.1:+22558582 MS.gene29266:CDS
AATTTATTCAATGGGAAGAA+TGG 0.451166 1.1:+22559792 MS.gene29266:CDS
CCATGGCCCTTTGAATCTAA+AGG 0.451528 1.1:-22558026 None:intergenic
AACATCATGGCCTAACCAAT+TGG 0.451675 1.1:+22557912 MS.gene29266:CDS
GGAAGATGATAAGCGAAAAT+CGG 0.459877 1.1:+22558639 MS.gene29266:CDS
ATATATGCAATTTATTCAAT+GGG 0.463676 1.1:+22559784 MS.gene29266:CDS
ATAGCCTTCCATACACAAAC+TGG 0.469665 1.1:-22558499 None:intergenic
GCTATGAGGTTTCTTAACTT+AGG 0.480283 1.1:+22558517 MS.gene29266:CDS
ATGAGGCTTAAAGATGAGAA+TGG 0.481356 1.1:+22558679 MS.gene29266:CDS
ATTACCTCTTTATGATCCAT+AGG 0.481913 1.1:-22558985 None:intergenic
GAAAGATGGTTAACTAAAGA+TGG 0.486051 1.1:+22559853 MS.gene29266:CDS
TGTTATAAGGGCAAGAAAGA+AGG 0.486158 1.1:+22558594 MS.gene29266:CDS
GGGAAGAATGGAAAACATAT+GGG 0.488104 1.1:+22559804 MS.gene29266:CDS
TAAAGTGTCAAAGAAAGCTT+AGG 0.491827 1.1:-22560033 None:intergenic
TCTTCAAAAGCTCTTGCAAA+AGG 0.493073 1.1:-22558442 None:intergenic
AGGTATGGAGAGAAAGTTGA+AGG 0.495061 1.1:+22558537 MS.gene29266:CDS
CAAAATATCTTGAAGATCGA+TGG 0.496051 1.1:-22558338 None:intergenic
TTCAAAGATGAATCTAAGAC+AGG 0.498427 1.1:-22558304 None:intergenic
ATGGAACCTTTAGATTCAAA+GGG 0.498830 1.1:+22558020 MS.gene29266:CDS
TATGGCTGCAACCATGTTGG+AGG 0.505689 1.1:-22557783 None:intergenic
GGAGGACCGAGGTTGTGTTT+AGG 0.518415 1.1:+22559919 MS.gene29266:CDS
ACTAAAGATGGTCATTTCAT+CGG 0.523408 1.1:+22559865 MS.gene29266:CDS
CGCGCCAGTTTGTGTATGGA+AGG 0.527833 1.1:+22558495 MS.gene29266:CDS
TAGAGTTCAAGCCAGAAAGA+TGG 0.532275 1.1:+22559839 MS.gene29266:CDS
CCTTTAGATTCAAAGGGCCA+TGG 0.535114 1.1:+22558026 MS.gene29266:CDS
GGTTATGCCTTCATACATGT+TGG 0.535174 1.1:-22557978 None:intergenic
TTTGCAGGGTTGTGAGTCAG+AGG 0.537794 1.1:+22558845 MS.gene29266:CDS
CTGAAAACCAACATGTATGA+AGG 0.543672 1.1:+22557971 MS.gene29266:CDS
GATGGAACAAAACTAAAAGA+AGG 0.543890 1.1:+22559751 MS.gene29266:CDS
AAGAAAGCTTAGGAACAATA+GGG 0.544624 1.1:-22560023 None:intergenic
AATATTAGAAGAGATTTGCA+GGG 0.547974 1.1:+22558831 MS.gene29266:CDS
TTCTATGGCTGCAACCATGT+TGG 0.548713 1.1:-22557786 None:intergenic
TCAGAGGGAGGATATCAAGA+AGG 0.550184 1.1:+22558861 MS.gene29266:CDS
TGTTCCTATGGATCATAAAG+AGG 0.552892 1.1:+22558981 MS.gene29266:CDS
ATGATGTTTCTTGGAGTGCA+AGG 0.557000 1.1:-22557897 None:intergenic
TTCAGTCCTATGATTAAGGA+AGG 0.560292 1.1:-22557953 None:intergenic
ATGTTTGAGATTTAGGTCAG+AGG 0.565858 1.1:+22558897 MS.gene29266:CDS
TTGACACTTTACATGAAACA+TGG 0.567667 1.1:+22560045 MS.gene29266:CDS
TTTGTGTATGGAAGGCTATG+AGG 0.568077 1.1:+22558503 MS.gene29266:CDS
TTCTAAATTATGAGGTTCTG+AGG 0.570528 1.1:-22558074 None:intergenic
AAATTCACTGCTTTCAATGG+AGG 0.571369 1.1:+22559901 MS.gene29266:CDS
TGATCAGAATCATGAAGTTG+AGG 0.573405 1.1:+22558804 MS.gene29266:intron
GTTTCTGATTTACTTGGAGA+CGG 0.575619 1.1:+22558154 MS.gene29266:CDS
GAAGGTAGCATTCCAAAGAC+AGG 0.578261 1.1:-22557935 None:intergenic
TTGCACTCCAAGAAACATCA+TGG 0.579240 1.1:+22557899 MS.gene29266:CDS
TTATGATCCATAGGAACAGA+AGG 0.580766 1.1:-22558976 None:intergenic
GATTGAAAGTTAATCTTCGT+AGG 0.584049 1.1:+22560067 MS.gene29266:CDS
ATCTTTAAGCCTCATAAACA+CGG 0.587397 1.1:-22558671 None:intergenic
CAGAGGGAGGATATCAAGAA+GGG 0.588371 1.1:+22558862 MS.gene29266:CDS
ACGAAACATGGCAGAAACAA+AGG 0.603675 1.1:+22558194 MS.gene29266:CDS
TTGCAGGGTTGTGAGTCAGA+GGG 0.611805 1.1:+22558846 MS.gene29266:CDS
CTGCTTTCAATGGAGGACCG+AGG 0.630541 1.1:+22559908 MS.gene29266:CDS
TTCATGCTACACCTCCAACA+TGG 0.633303 1.1:+22557772 MS.gene29266:CDS
GGAAGAATGGAAAACATATG+GGG 0.633456 1.1:+22559805 MS.gene29266:CDS
TTGCTGTAGATAACGAAACA+TGG 0.638925 1.1:+22558182 MS.gene29266:CDS
CAGGGTTGTGAGTCAGAGGG+AGG 0.641550 1.1:+22558849 MS.gene29266:CDS
GAAGATGACACATTCCCAGA+TGG 0.647740 1.1:+22559733 MS.gene29266:CDS
AAATGAAGTTGCAAACAACA+AGG 0.647984 1.1:-22558409 None:intergenic
GATTCTCAACAACCTTAACA+TGG 0.663167 1.1:-22559999 None:intergenic
ATGAATGATTATGAAGACAA+TGG 0.666821 1.1:-22557873 None:intergenic
CAATTGAAACTAGTGAACCA+TGG 0.673397 1.1:-22558043 None:intergenic
TCTTTGCCTAAACACAACCT+CGG 0.675873 1.1:-22559925 None:intergenic
AGGTGTAGCATGAAAATGTG+AGG 0.742376 1.1:-22557763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTTTCATC+AGG + chr1.1:22559705-22559724 MS.gene29266:intron 10.0%
!! ATATATGCAATTTATTCAAT+GGG + chr1.1:22559784-22559803 MS.gene29266:CDS 15.0%
!!! TCTTTTCTTACAATATTATT+AGG - chr1.1:22559563-22559582 None:intergenic 15.0%
!! AAAACTATTCACAAAATTCA+AGG + chr1.1:22559488-22559507 MS.gene29266:intron 20.0%
!! CAATAATGATTTCTATGATT+TGG - chr1.1:22557850-22557869 None:intergenic 20.0%
!! GATATATGCAATTTATTCAA+TGG + chr1.1:22559783-22559802 MS.gene29266:CDS 20.0%
!!! ATTATTCAGATAAGTTTTTG+AGG + chr1.1:22558707-22558726 MS.gene29266:CDS 20.0%
!!! ATTTTGATGTTTAAGTGTAT+CGG - chr1.1:22558002-22558021 None:intergenic 20.0%
!!! TCATTTTAGTCCATATATAT+GGG - chr1.1:22559328-22559347 None:intergenic 20.0%
!!! TTATTCAGATAAGTTTTTGA+GGG + chr1.1:22558708-22558727 MS.gene29266:CDS 20.0%
!!! TTATTGATTGAAGTTCATAT+TGG + chr1.1:22559682-22559701 MS.gene29266:intron 20.0%
!!! TTTTTTTTTTTTTCATCAGG+TGG + chr1.1:22559708-22559727 MS.gene29266:intron 20.0%
! AAATATTAGAAGAGATTTGC+AGG + chr1.1:22558830-22558849 MS.gene29266:CDS 25.0%
! AAGAAAGAAGGAAATTTCTT+TGG + chr1.1:22558606-22558625 MS.gene29266:CDS 25.0%
! AATATTAGAAGAGATTTGCA+GGG + chr1.1:22558831-22558850 MS.gene29266:CDS 25.0%
! AATTTATTCAATGGGAAGAA+TGG + chr1.1:22559792-22559811 MS.gene29266:CDS 25.0%
! AGTTTCATTCAACAAAGTTT+AGG + chr1.1:22558233-22558252 MS.gene29266:CDS 25.0%
! ATGAATGATTATGAAGACAA+TGG - chr1.1:22557876-22557895 None:intergenic 25.0%
! ATTGAAAGCAGTGAATTTAT+AGG - chr1.1:22559899-22559918 None:intergenic 25.0%
! GATACACTTAAACATCAAAA+TGG + chr1.1:22558001-22558020 MS.gene29266:CDS 25.0%
! TATAAATTCACTGCTTTCAA+TGG + chr1.1:22559898-22559917 MS.gene29266:CDS 25.0%
! TCTGAATAAAATGATCTCTT+TGG + chr1.1:22559424-22559443 MS.gene29266:intron 25.0%
!! AGAAGATGTTCTAAATTATG+AGG - chr1.1:22558085-22558104 None:intergenic 25.0%
!! AGATTCATCTTTGAAGAAAT+CGG + chr1.1:22558312-22558331 MS.gene29266:CDS 25.0%
!! ATTTGCTGATAGTGTTATAA+GGG + chr1.1:22558582-22558601 MS.gene29266:CDS 25.0%
!! TGTAAAGTAAAGAGTCATTT+TGG + chr1.1:22559099-22559118 MS.gene29266:intron 25.0%
!! TTGATGAATGTTTGAGATTT+AGG + chr1.1:22558890-22558909 MS.gene29266:CDS 25.0%
!!! AATTTCTTTGGAACATGATA+TGG + chr1.1:22558618-22558637 MS.gene29266:CDS 25.0%
!!! AATTTGCTGATAGTGTTATA+AGG + chr1.1:22558581-22558600 MS.gene29266:CDS 25.0%
!!! GTCATTTTAGTCCATATATA+TGG - chr1.1:22559329-22559348 None:intergenic 25.0%
!!! GTGTAAGTTTTATATTAGCT+GGG + chr1.1:22558737-22558756 MS.gene29266:intron 25.0%
!!! TGTGTAAGTTTTATATTAGC+TGG + chr1.1:22558736-22558755 MS.gene29266:intron 25.0%
!!! TTTTGGTTTATAAATGTGTG+AGG + chr1.1:22559116-22559135 MS.gene29266:intron 25.0%
AAAGAAAGCTTAGGAACAAT+AGG - chr1.1:22560027-22560046 None:intergenic 30.0%
AAATGAAGTTGCAAACAACA+AGG - chr1.1:22558412-22558431 None:intergenic 30.0%
AAGAAAGCTTAGGAACAATA+GGG - chr1.1:22560026-22560045 None:intergenic 30.0%
AATGGAACCTTTAGATTCAA+AGG + chr1.1:22558019-22558038 MS.gene29266:CDS 30.0%
ACTAAAGATGGTCATTTCAT+CGG + chr1.1:22559865-22559884 MS.gene29266:CDS 30.0%
ATCTTTAAGCCTCATAAACA+CGG - chr1.1:22558674-22558693 None:intergenic 30.0%
ATGGAACCTTTAGATTCAAA+GGG + chr1.1:22558020-22558039 MS.gene29266:CDS 30.0%
ATTACCTCTTTATGATCCAT+AGG - chr1.1:22558988-22559007 None:intergenic 30.0%
ATTATATCCTTCTGTTCCTA+TGG + chr1.1:22558969-22558988 MS.gene29266:CDS 30.0%
CAAAATATCTTGAAGATCGA+TGG - chr1.1:22558341-22558360 None:intergenic 30.0%
CATATTTCGTTACCATGTTA+AGG + chr1.1:22559987-22560006 MS.gene29266:CDS 30.0%
GAAAGATGGTTAACTAAAGA+TGG + chr1.1:22559853-22559872 MS.gene29266:CDS 30.0%
GATGGAACAAAACTAAAAGA+AGG + chr1.1:22559751-22559770 MS.gene29266:CDS 30.0%
GATTGAAAGTTAATCTTCGT+AGG + chr1.1:22560067-22560086 MS.gene29266:CDS 30.0%
GGAATAAACTCTCTTATAGT+AGG + chr1.1:22559445-22559464 MS.gene29266:intron 30.0%
TCTTTAGTTAACCATCTTTC+TGG - chr1.1:22559853-22559872 None:intergenic 30.0%
TGAAAATGTGAGGTTGAAAT+TGG - chr1.1:22557756-22557775 None:intergenic 30.0%
TGTTTGAGCTTGTGAATAAT+AGG + chr1.1:22558275-22558294 MS.gene29266:CDS 30.0%
TTCTAAATTATGAGGTTCTG+AGG - chr1.1:22558077-22558096 None:intergenic 30.0%
TTGACACTTTACATGAAACA+TGG + chr1.1:22560045-22560064 MS.gene29266:CDS 30.0%
! AAGTTCACTATTTTCCCTAA+AGG + chr1.1:22558112-22558131 MS.gene29266:CDS 30.0%
! ATTTGTTAACCGTGTTTATG+AGG + chr1.1:22558662-22558681 MS.gene29266:CDS 30.0%
! CTTTGAAGAAGTTTCCTTTA+GGG - chr1.1:22558129-22558148 None:intergenic 30.0%
! GTGAGAAAACAAGTTTTCTA+TGG - chr1.1:22557804-22557823 None:intergenic 30.0%
! TAAAGTGTCAAAGAAAGCTT+AGG - chr1.1:22560036-22560055 None:intergenic 30.0%
! TCTTTGAAGAAGTTTCCTTT+AGG - chr1.1:22558130-22558149 None:intergenic 30.0%
! TTCAAAGATGAATCTAAGAC+AGG - chr1.1:22558307-22558326 None:intergenic 30.0%
! TTTTAGTCCATATATATGGG+AGG - chr1.1:22559325-22559344 None:intergenic 30.0%
!! ATGTCTTGGTTAGTTACTTT+TGG + chr1.1:22559241-22559260 MS.gene29266:intron 30.0%
!! ATGTGTTATGTTGGTTTGTT+TGG + chr1.1:22559211-22559230 MS.gene29266:intron 30.0%
!!! CTTTTAGTTTTGTTCCATCT+GGG - chr1.1:22559750-22559769 None:intergenic 30.0%
!!! GAAATTGGAAGTGTTAGTTT+TGG - chr1.1:22557741-22557760 None:intergenic 30.0%
!!! TCTTTTAGTTTTGTTCCATC+TGG - chr1.1:22559751-22559770 None:intergenic 30.0%
!!! TTGCTTTGAGTTGGTTTTTT+TGG + chr1.1:22558776-22558795 MS.gene29266:intron 30.0%
!!! TTTGAGTTGGTTTTTTTGGT+TGG + chr1.1:22558780-22558799 MS.gene29266:intron 30.0%
!!! TTTTTTTTTTCATCAGGTGG+TGG + chr1.1:22559711-22559730 MS.gene29266:intron 30.0%
AAATTCACTGCTTTCAATGG+AGG + chr1.1:22559901-22559920 MS.gene29266:CDS 35.0%
AACAACACCTCCCATATATA+TGG + chr1.1:22559315-22559334 MS.gene29266:intron 35.0%
AATTCGCCCCTAAAATTGTA+GGG - chr1.1:22559529-22559548 None:intergenic 35.0%
ATGAGGCTTAAAGATGAGAA+TGG + chr1.1:22558679-22558698 MS.gene29266:CDS 35.0%
ATGCTACCTTCCTTAATCAT+AGG + chr1.1:22557947-22557966 MS.gene29266:CDS 35.0%
CAATTGAAACTAGTGAACCA+TGG - chr1.1:22558046-22558065 None:intergenic 35.0%
CTGAAAACCAACATGTATGA+AGG + chr1.1:22557971-22557990 MS.gene29266:CDS 35.0%
GACACAGTTTCTGATTTACT+TGG + chr1.1:22558148-22558167 MS.gene29266:CDS 35.0%
GAGGTTTCTTAACTTAGGTA+TGG + chr1.1:22558522-22558541 MS.gene29266:CDS 35.0%
GATTCTCAACAACCTTAACA+TGG - chr1.1:22560002-22560021 None:intergenic 35.0%
GATTCTCGAATGTGTTATGT+TGG + chr1.1:22559202-22559221 MS.gene29266:intron 35.0%
GCTATGAGGTTTCTTAACTT+AGG + chr1.1:22558517-22558536 MS.gene29266:CDS 35.0%
GGAAGAATGGAAAACATATG+GGG + chr1.1:22559805-22559824 MS.gene29266:CDS 35.0%
GGAAGATGATAAGCGAAAAT+CGG + chr1.1:22558639-22558658 MS.gene29266:CDS 35.0%
GGGAAGAATGGAAAACATAT+GGG + chr1.1:22559804-22559823 MS.gene29266:CDS 35.0%
GTAACTAACCAAGACATTGT+TGG - chr1.1:22559238-22559257 None:intergenic 35.0%
GTTTCTGATTTACTTGGAGA+CGG + chr1.1:22558154-22558173 MS.gene29266:CDS 35.0%
TCGATTAATGTGCTTCAAGT+GGG + chr1.1:22559356-22559375 MS.gene29266:intron 35.0%
TCTTCAAAAGCTCTTGCAAA+AGG - chr1.1:22558445-22558464 None:intergenic 35.0%
TGATCAGAATCATGAAGTTG+AGG + chr1.1:22558804-22558823 MS.gene29266:intron 35.0%
TGGGAAGAATGGAAAACATA+TGG + chr1.1:22559803-22559822 MS.gene29266:CDS 35.0%
TGTTATAAGGGCAAGAAAGA+AGG + chr1.1:22558594-22558613 MS.gene29266:CDS 35.0%
TGTTCCTATGGATCATAAAG+AGG + chr1.1:22558981-22559000 MS.gene29266:CDS 35.0%
TTATGATCCATAGGAACAGA+AGG - chr1.1:22558979-22558998 None:intergenic 35.0%
TTCAGTCCTATGATTAAGGA+AGG - chr1.1:22557956-22557975 None:intergenic 35.0%
TTGCTGTAGATAACGAAACA+TGG + chr1.1:22558182-22558201 MS.gene29266:CDS 35.0%
! ATGTTTGAGATTTAGGTCAG+AGG + chr1.1:22558897-22558916 MS.gene29266:CDS 35.0%
! GGTTTTCAGTCCTATGATTA+AGG - chr1.1:22557960-22557979 None:intergenic 35.0%
!! ACTTTTGGTGATACACTTGA+AGG + chr1.1:22559256-22559275 MS.gene29266:intron 35.0%
AACATCATGGCCTAACCAAT+TGG + chr1.1:22557912-22557931 MS.gene29266:CDS 40.0%
ACGAAACATGGCAGAAACAA+AGG + chr1.1:22558194-22558213 MS.gene29266:CDS 40.0%
AGGTATGGAGAGAAAGTTGA+AGG + chr1.1:22558537-22558556 MS.gene29266:CDS 40.0%
AGGTGTAGCATGAAAATGTG+AGG - chr1.1:22557766-22557785 None:intergenic 40.0%
ATAGCCTTCCATACACAAAC+TGG - chr1.1:22558502-22558521 None:intergenic 40.0%
ATGATGTTTCTTGGAGTGCA+AGG - chr1.1:22557900-22557919 None:intergenic 40.0%
ATTCGCCCCTAAAATTGTAG+GGG - chr1.1:22559528-22559547 None:intergenic 40.0%
CAATTCGCCCCTAAAATTGT+AGG - chr1.1:22559530-22559549 None:intergenic 40.0%
CTCGATTAATGTGCTTCAAG+TGG + chr1.1:22559355-22559374 MS.gene29266:intron 40.0%
GGTTATGCCTTCATACATGT+TGG - chr1.1:22557981-22558000 None:intergenic 40.0%
GTCAGAGGAGATTAAGAAGA+TGG + chr1.1:22558912-22558931 MS.gene29266:CDS 40.0%
TAGAGTTCAAGCCAGAAAGA+TGG + chr1.1:22559839-22559858 MS.gene29266:CDS 40.0%
TCTTTGCCTAAACACAACCT+CGG - chr1.1:22559928-22559947 None:intergenic 40.0%
TGTTTGGTCCAACAATGTCT+TGG + chr1.1:22559227-22559246 MS.gene29266:intron 40.0%
TTGCACTCCAAGAAACATCA+TGG + chr1.1:22557899-22557918 MS.gene29266:CDS 40.0%
TTTGTGTATGGAAGGCTATG+AGG + chr1.1:22558503-22558522 MS.gene29266:CDS 40.0%
! ATGCCAACCCCTACAATTTT+AGG + chr1.1:22559518-22559537 MS.gene29266:intron 40.0%
! CTTCTTCAGTTGCTTTGAGT+TGG + chr1.1:22558767-22558786 MS.gene29266:intron 40.0%
! TGCCAACCCCTACAATTTTA+GGG + chr1.1:22559519-22559538 MS.gene29266:intron 40.0%
!! CTACAATTTTAGGGGCGAAT+TGG + chr1.1:22559528-22559547 MS.gene29266:intron 40.0%
!! GCTCTTGCAAAAGGTATTTC+AGG - chr1.1:22558436-22558455 None:intergenic 40.0%
CAAAGACAGGCCAATTGGTT+AGG - chr1.1:22557925-22557944 None:intergenic 45.0%
CAGAGGGAGGATATCAAGAA+GGG + chr1.1:22558862-22558881 MS.gene29266:CDS 45.0%
CATTCCAAAGACAGGCCAAT+TGG - chr1.1:22557930-22557949 None:intergenic 45.0%
CCATGGCCCTTTGAATCTAA+AGG - chr1.1:22558029-22558048 None:intergenic 45.0%
CCTTTAGATTCAAAGGGCCA+TGG + chr1.1:22558026-22558045 MS.gene29266:CDS 45.0%
GAAGATGACACATTCCCAGA+TGG + chr1.1:22559733-22559752 MS.gene29266:CDS 45.0%
GAAGGTAGCATTCCAAAGAC+AGG - chr1.1:22557938-22557957 None:intergenic 45.0%
GGTTAGGCCATGATGTTTCT+TGG - chr1.1:22557909-22557928 None:intergenic 45.0%
TCAGAGGGAGGATATCAAGA+AGG + chr1.1:22558861-22558880 MS.gene29266:CDS 45.0%
TTCATGCTACACCTCCAACA+TGG + chr1.1:22557772-22557791 MS.gene29266:CDS 45.0%
TTCTATGGCTGCAACCATGT+TGG - chr1.1:22557789-22557808 None:intergenic 45.0%
! CTAACCAATTGGCCTGTCTT+TGG + chr1.1:22557923-22557942 MS.gene29266:CDS 45.0%
! GCCAACCCCTACAATTTTAG+GGG + chr1.1:22559520-22559539 MS.gene29266:intron 45.0%
!!! AATAAAAGTTTAATTTAATT+TGG + chr1.1:22559005-22559024 MS.gene29266:intron 5.0%
GCCCCTAAAATTGTAGGGGT+TGG - chr1.1:22559524-22559543 None:intergenic 50.0%
TATGGCTGCAACCATGTTGG+AGG - chr1.1:22557786-22557805 None:intergenic 50.0%
TTGCAGGGTTGTGAGTCAGA+GGG + chr1.1:22558846-22558865 MS.gene29266:CDS 50.0%
TTGTCGCGCCAGTTTGTGTA+TGG + chr1.1:22558491-22558510 MS.gene29266:CDS 50.0%
TTTGCAGGGTTGTGAGTCAG+AGG + chr1.1:22558845-22558864 MS.gene29266:CDS 50.0%
CGCGCCAGTTTGTGTATGGA+AGG + chr1.1:22558495-22558514 MS.gene29266:CDS 55.0%
CTGCTTTCAATGGAGGACCG+AGG + chr1.1:22559908-22559927 MS.gene29266:CDS 55.0%
GGAGGACCGAGGTTGTGTTT+AGG + chr1.1:22559919-22559938 MS.gene29266:CDS 55.0%
CAGGGTTGTGAGTCAGAGGG+AGG + chr1.1:22558849-22558868 MS.gene29266:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 22557734 22560131 22557734 ID=MS.gene29266
chr1.1 mRNA 22557734 22560131 22557734 ID=MS.gene29266.t1;Parent=MS.gene29266
chr1.1 exon 22557734 22558738 22557734 ID=MS.gene29266.t1.exon1;Parent=MS.gene29266.t1
chr1.1 CDS 22557734 22558738 22557734 ID=cds.MS.gene29266.t1;Parent=MS.gene29266.t1
chr1.1 exon 22558811 22559002 22558811 ID=MS.gene29266.t1.exon2;Parent=MS.gene29266.t1
chr1.1 CDS 22558811 22559002 22558811 ID=cds.MS.gene29266.t1;Parent=MS.gene29266.t1
chr1.1 exon 22559727 22560131 22559727 ID=MS.gene29266.t1.exon3;Parent=MS.gene29266.t1
chr1.1 CDS 22559727 22560131 22559727 ID=cds.MS.gene29266.t1;Parent=MS.gene29266.t1
Gene Sequence

>MS.gene29266

ATGACCAAAACTAACACTTCCAATTTCAACCTCACATTTTCATGCTACACCTCCAACATGGTTGCAGCCATAGAAAACTTGTTTTCTCACATTCTTTTGCTCTTTCAACAAATCCAAATCATAGAAATCATTATTGCATCCATTGTCTTCATAATCATTCATGCCTTGCACTCCAAGAAACATCATGGCCTAACCAATTGGCCTGTCTTTGGAATGCTACCTTCCTTAATCATAGGACTGAAAACCAACATGTATGAAGGCATAACCGATACACTTAAACATCAAAATGGAACCTTTAGATTCAAAGGGCCATGGTTCACTAGTTTCAATTGCATCATTACCTCAGAACCTCATAATTTAGAACATCTTCTCAAAACAAAGTTCACTATTTTCCCTAAAGGAAACTTCTTCAAAGACACAGTTTCTGATTTACTTGGAGACGGTATTTTTGCTGTAGATAACGAAACATGGCAGAAACAAAGGAAAACAGCGAGTATCGAGTTTCATTCAACAAAGTTTAGGAAATTAACAACTGATTCATTGTTTGAGCTTGTGAATAATAGGCTTATACCTGTCTTAGATTCATCTTTGAAGAAATCGGTTTCCATCGATCTTCAAGATATTTTGTTGAGATTAACTTTTGATAATGTTTGTATGATAGCTTTTGATGTTGATCCTTGTTGTTTGCAACTTCATTTACCTGAAATACCTTTTGCAAGAGCTTTTGAAGATGCAACAGAAGCAACTTTGCTTCGATTTGTCGCGCCAGTTTGTGTATGGAAGGCTATGAGGTTTCTTAACTTAGGTATGGAGAGAAAGTTGAAGGAATCAATACAAAAAGTTGATGAATTTGCTGATAGTGTTATAAGGGCAAGAAAGAAGGAAATTTCTTTGGAACATGATATGGAAGATGATAAGCGAAAATCGGATTTGTTAACCGTGTTTATGAGGCTTAAAGATGAGAATGGAAAGCATTATTCAGATAAGTTTTTGAGGGATATATGTGTAAGTTTTATATTAGCTGGGAGAGACACTTCTTCAGTTGCTTTGAGTTGGTTTTTTTGGTTGGTTGATCAGAATCATGAAGTTGAGGAGAAAATATTAGAAGAGATTTGCAGGGTTGTGAGTCAGAGGGAGGATATCAAGAAGGGAGAGTTTGATGAATGTTTGAGATTTAGGTCAGAGGAGATTAAGAAGATGGATTATTTGCATGCTGCTCTTTCAGAAACTCTTAGATTATATCCTTCTGTTCCTATGGATCATAAAGAGGTAATAAAAGTTTAATTTAATTTGGTCATTTTTTTATTCATTGATATTCATGTTTCTCATATCTTTCATGATTGTGATTTGTGTGCAAATGATTGATGTAAAGTAAAGAGTCATTTTGGTTTATAAATGTGTGAGGCGCTTTTAGAATAGTATCAAAATTACGAAAATGTGTCTAAATGCAACTATTGTTAATCAATTTGATTCTCGAATGTGTTATGTTGGTTTGTTTGGTCCAACAATGTCTTGGTTAGTTACTTTTGGTGATACACTTGAAGGTGTTTTTGTAATGTCAATAGATTTAAAGATTGTAGTAACAACACCTCCCATATATATGGACTAAAATGACTGTTTACTCGATTAATGTGCTTCAAGTGGGATTTTTTTTTTAGAATTCAAGTTTAATCAATGATTGAAACAATCTTCTGAATAAAATGATCTCTTTGGAATAAACTCTCTTATAGTAGGAGTTATATAAAAAAAAAAAAAAAACTATTCACAAAATTCAAGGAAGTAAAATGCCAACCCCTACAATTTTAGGGGCGAATTGGTCAAGTACTCCTAATAATATTGTAAGAAAAGAGTAATTAATATTTTGTAAGTATTCTTAAATTAAAAATAAAAAATATTTCACACATGACAATATGATCAGATAGATGAAGTAATAGAAATCAACTATCTATTATTGATTGAAGTTCATATTGGATTTTTTTTTTTTTTTCATCAGGTGGTGGAAGATGACACATTCCCAGATGGAACAAAACTAAAAGAAGGAACAAAAGTGATATATGCAATTTATTCAATGGGAAGAATGGAAAACATATGGGGAAAAGATTGCTTAGAGTTCAAGCCAGAAAGATGGTTAACTAAAGATGGTCATTTCATCGGCGAATCTGCCTATAAATTCACTGCTTTCAATGGAGGACCGAGGTTGTGTTTAGGCAAAGATTTTGCATACTATCAAATGAAATATGTTGCAGCTAGCATCATATTTCGTTACCATGTTAAGGTTGTTGAGAATCACCCTATTGTTCCTAAGCTTTCTTTGACACTTTACATGAAACATGGATTGAAAGTTAATCTTCGTAGGCGTTGTGATGAAGAAATTCATAAATACTTGAAGATTAGTTAG
Protein sequence

>MS.gene29266.t1

MTKTNTSNFNLTFSCYTSNMVAAIENLFSHILLLFQQIQIIEIIIASIVFIIIHALHSKKHHGLTNWPVFGMLPSLIIGLKTNMYEGITDTLKHQNGTFRFKGPWFTSFNCIITSEPHNLEHLLKTKFTIFPKGNFFKDTVSDLLGDGIFAVDNETWQKQRKTASIEFHSTKFRKLTTDSLFELVNNRLIPVLDSSLKKSVSIDLQDILLRLTFDNVCMIAFDVDPCCLQLHLPEIPFARAFEDATEATLLRFVAPVCVWKAMRFLNLGMERKLKESIQKVDEFADSVIRARKKEISLEHDMEDDKRKSDLLTVFMRLKDENGKHYSDKFLRDICNHEVEEKILEEICRVVSQREDIKKGEFDECLRFRSEEIKKMDYLHAALSETLRLYPSVPMDHKEVVEDDTFPDGTKLKEGTKVIYAIYSMGRMENIWGKDCLEFKPERWLTKDGHFIGESAYKFTAFNGGPRLCLGKDFAYYQMKYVAASIIFRYHVKVVENHPIVPKLSLTLYMKHGLKVNLRRRCDEEIHKYLKIS