Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29527.t1 | XP_024641057.1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 8.10E-128 | 466.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29527.t1 | Q8W487 | 58.8 | 194 | 74 | 3 | 63 | 254 | 60 | 249 | 1.8e-46 | 187.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29527.t1 | A0A396I021 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 5.9e-128 | 466.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene29527 | 0.817141 | 3.85E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034255 | MS.gene29527 | PPI |
| MS.gene040271 | MS.gene29527 | PPI |
| MS.gene67544 | MS.gene29527 | PPI |
| MS.gene29527 | MS.gene040269 | PPI |
| MS.gene000604 | MS.gene29527 | PPI |
| MS.gene053230 | MS.gene29527 | PPI |
| MS.gene055201 | MS.gene29527 | PPI |
| MS.gene46104 | MS.gene29527 | PPI |
| MS.gene46105 | MS.gene29527 | PPI |
| MS.gene29527 | MS.gene89319 | PPI |
| MS.gene040272 | MS.gene29527 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29527.t1 | MTR_5g080880 | 99.213 | 254 | 2 | 0 | 1 | 254 | 1 | 254 | 0.0 | 523 |
| MS.gene29527.t1 | MTR_5g080870 | 67.059 | 255 | 49 | 6 | 1 | 255 | 1 | 220 | 2.60e-110 | 321 |
| MS.gene29527.t1 | MTR_7g063520 | 48.000 | 250 | 111 | 5 | 8 | 254 | 20 | 253 | 2.86e-72 | 221 |
| MS.gene29527.t1 | MTR_4g006560 | 40.881 | 159 | 87 | 3 | 97 | 254 | 83 | 235 | 7.30e-31 | 115 |
| MS.gene29527.t1 | MTR_1g013120 | 32.083 | 240 | 143 | 9 | 24 | 254 | 4 | 232 | 9.71e-26 | 101 |
| MS.gene29527.t1 | MTR_5g093000 | 32.164 | 171 | 90 | 7 | 92 | 253 | 59 | 212 | 3.42e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29527.t1 | AT3G55605 | 50.000 | 270 | 106 | 8 | 1 | 254 | 1 | 257 | 2.42e-70 | 217 |
| MS.gene29527.t1 | AT5G05990 | 46.212 | 264 | 120 | 5 | 5 | 254 | 3 | 258 | 8.42e-70 | 216 |
| MS.gene29527.t1 | AT2G39795 | 53.299 | 197 | 86 | 3 | 60 | 254 | 57 | 249 | 1.79e-64 | 201 |
| MS.gene29527.t1 | AT5G02050 | 43.750 | 272 | 129 | 5 | 1 | 254 | 1 | 266 | 1.26e-58 | 187 |
| MS.gene29527.t1 | AT2G39790 | 35.249 | 261 | 138 | 6 | 1 | 253 | 1 | 238 | 2.04e-38 | 134 |
| MS.gene29527.t1 | AT1G15870 | 33.824 | 204 | 121 | 5 | 54 | 254 | 48 | 240 | 1.53e-26 | 103 |
| MS.gene29527.t1 | AT1G80720 | 32.105 | 190 | 115 | 6 | 68 | 254 | 10 | 188 | 1.02e-21 | 89.7 |
| MS.gene29527.t1 | AT1G80720 | 32.105 | 190 | 115 | 6 | 68 | 254 | 62 | 240 | 1.06e-21 | 90.9 |
| MS.gene29527.t1 | AT4G31930 | 32.632 | 190 | 114 | 7 | 68 | 253 | 53 | 232 | 7.21e-21 | 88.6 |
| MS.gene29527.t1 | AT4G32605 | 32.927 | 164 | 91 | 5 | 97 | 253 | 66 | 217 | 1.14e-17 | 79.7 |
Find 55 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTATCAACTATCTTAAA+TGG | 0.175868 | 5.3:-65081102 | None:intergenic |
| TCCACAAGTACTTAGAAATA+AGG | 0.241404 | 5.3:+65081866 | MS.gene29527:CDS |
| CACATGCCTGATTTGGTTAC+TGG | 0.250062 | 5.3:+65081186 | MS.gene29527:CDS |
| AGTGTTATTGTCTGATTTCC+TGG | 0.252098 | 5.3:-65081123 | None:intergenic |
| ATCAGACAATAACACTTAAA+AGG | 0.289378 | 5.3:+65081130 | MS.gene29527:CDS |
| TAAGAAGGATGGGCCCTCTT+TGG | 0.320568 | 5.3:+65081296 | MS.gene29527:CDS |
| TTATCAAGGTGAAGAAATTC+AGG | 0.325526 | 5.3:+65081155 | MS.gene29527:CDS |
| CCACAAGTACTTAGAAATAA+GGG | 0.328236 | 5.3:+65081867 | MS.gene29527:CDS |
| CTGTCGATAACAATCTCATC+TGG | 0.355760 | 5.3:-65081339 | None:intergenic |
| TGAGGTTCACATGCCTGATT+TGG | 0.368998 | 5.3:+65081179 | MS.gene29527:CDS |
| CCAAGTCAAGCACTTTCGTT+AGG | 0.373305 | 5.3:+65078584 | MS.gene29527:CDS |
| AGAAGTACATACTGAAAATC+TGG | 0.385204 | 5.3:-65081414 | None:intergenic |
| GCTCAGGAAACCGATGATTT+CGG | 0.391310 | 5.3:+65078793 | MS.gene29527:CDS |
| CCCTTATTTCTAAGTACTTG+TGG | 0.408675 | 5.3:-65081867 | None:intergenic |
| CGCCGCCGTCAATCGATACC+AGG | 0.411836 | 5.3:+65078669 | MS.gene29527:CDS |
| TTCAGTCAGTGTTTCTAAGA+AGG | 0.415683 | 5.3:+65081281 | MS.gene29527:CDS |
| TGCAAGAAATTTGTTGTGCT+TGG | 0.436674 | 5.3:-65081898 | None:intergenic |
| TGAAAATCTGGCCCGTCATA+AGG | 0.439441 | 5.3:-65081402 | None:intergenic |
| TCTTCTCCGTTTCATCGAAT+CGG | 0.447658 | 5.3:+65078759 | MS.gene29527:CDS |
| CAAGGATAGTAGAGAATACT+TGG | 0.453079 | 5.3:+65081936 | MS.gene29527:CDS |
| GATTATCAACTATCTTAAAT+GGG | 0.456111 | 5.3:-65081101 | None:intergenic |
| TCTTCACCAGTAACCAAATC+AGG | 0.463223 | 5.3:-65081192 | None:intergenic |
| TTAGAAACACTGACTGAAAG+TGG | 0.463235 | 5.3:-65081276 | None:intergenic |
| GTCAGTGTTTCTAAGAAGGA+TGG | 0.492712 | 5.3:+65081285 | MS.gene29527:CDS |
| GAGAAGAATATCGTCGGAGG+TGG | 0.494464 | 5.3:-65078743 | None:intergenic |
| ATCGGAAATCACTTGTGCTC+AGG | 0.496436 | 5.3:+65078777 | MS.gene29527:CDS |
| TTTAAGATAGTTGATAATCC+AGG | 0.504200 | 5.3:+65081105 | MS.gene29527:CDS |
| CGATCATCAAGATGATGATA+AGG | 0.505904 | 5.3:+65081218 | MS.gene29527:CDS |
| AGGTGAAGAAATTCAGGTTG+AGG | 0.510992 | 5.3:+65081161 | MS.gene29527:CDS |
| CAAGTCAAGCACTTTCGTTA+GGG | 0.512325 | 5.3:+65078585 | MS.gene29527:CDS |
| ATCTTAAATGGGAAATTGCT+CGG | 0.515748 | 5.3:-65081090 | None:intergenic |
| GAAAGCACGGCGCGATGACC+CGG | 0.517251 | 5.3:-65078646 | None:intergenic |
| TGATTTCCGATTCGATGAAA+CGG | 0.520694 | 5.3:-65078765 | None:intergenic |
| ACTTACAGCGCCGAAATCAT+CGG | 0.522056 | 5.3:-65078803 | None:intergenic |
| ACACTTAAAAGGACTTATCA+AGG | 0.527097 | 5.3:+65081141 | MS.gene29527:CDS |
| ATGAACAGATTCCTTATGAC+GGG | 0.541918 | 5.3:+65081391 | MS.gene29527:CDS |
| ATTGACGGCGGCGGAAAGCA+CGG | 0.549833 | 5.3:-65078659 | None:intergenic |
| TGAACCCTGGTATCGATTGA+CGG | 0.565956 | 5.3:-65078674 | None:intergenic |
| AGAAGAATATCGTCGGAGGT+GGG | 0.577026 | 5.3:-65078742 | None:intergenic |
| TGTCGATAACAATCTCATCT+GGG | 0.591480 | 5.3:-65081338 | None:intergenic |
| CCTAACGAAAGTGCTTGACT+TGG | 0.591991 | 5.3:-65078584 | None:intergenic |
| CTGGTATCGATTGACGGCGG+CGG | 0.595525 | 5.3:-65078668 | None:intergenic |
| TCAGTGTTTCTAAGAAGGAT+GGG | 0.595788 | 5.3:+65081286 | MS.gene29527:CDS |
| CACAAGTACTTAGAAATAAG+GGG | 0.598764 | 5.3:+65081868 | MS.gene29527:CDS |
| ACACAACTGAACTCCAAAGA+GGG | 0.618264 | 5.3:-65081309 | None:intergenic |
| GATGAACAGATTCCTTATGA+CGG | 0.641036 | 5.3:+65081390 | MS.gene29527:CDS |
| ATAGTAGAGAATACTTGGTG+TGG | 0.641539 | 5.3:+65081941 | MS.gene29527:CDS |
| AACACAACTGAACTCCAAAG+AGG | 0.648826 | 5.3:-65081310 | None:intergenic |
| GCCGCCGTCAATCGATACCA+GGG | 0.649914 | 5.3:+65078670 | MS.gene29527:CDS |
| ACAGAAGAAAAGTGAAACGT+AGG | 0.650656 | 5.3:-65078703 | None:intergenic |
| GAAACGGAGAAGAATATCGT+CGG | 0.655705 | 5.3:-65078749 | None:intergenic |
| ACGTAGGAACAAATGAACCC+TGG | 0.662093 | 5.3:-65078687 | None:intergenic |
| ACGGAGAAGAATATCGTCGG+AGG | 0.701354 | 5.3:-65078746 | None:intergenic |
| GCATGAGTACATGATCAACA+AGG | 0.729521 | 5.3:+65081918 | MS.gene29527:CDS |
| ACCCTGGTATCGATTGACGG+CGG | 0.780259 | 5.3:-65078671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACAAAAAATTGAAA+AGG | - | chr5.3:65080963-65080982 | None:intergenic | 10.0% |
| !!! | TAAAATTTAATTTTTCTGTT+TGG | - | chr5.3:65079479-65079498 | None:intergenic | 10.0% |
| !!! | TTTTTTACTCTATTAATTAA+TGG | + | chr5.3:65080306-65080325 | MS.gene29527:intron | 10.0% |
| !! | AAATGTTGAAAATTTGAATT+TGG | + | chr5.3:65080991-65081010 | MS.gene29527:intron | 15.0% |
| !! | GTTAAGGTTAAAAAAAATTA+TGG | - | chr5.3:65079657-65079676 | None:intergenic | 15.0% |
| !! | TAAATATGATTATCTTAGTT+TGG | + | chr5.3:65079876-65079895 | MS.gene29527:intron | 15.0% |
| !! | TTATTTATGAAGAAAGAATT+TGG | + | chr5.3:65079734-65079753 | MS.gene29527:intron | 15.0% |
| !!! | AAATGTTGAAAAAATGATTT+TGG | + | chr5.3:65081046-65081065 | MS.gene29527:intron | 15.0% |
| !! | AGTAAAAATAAGTTATAAGC+TGG | - | chr5.3:65078959-65078978 | None:intergenic | 20.0% |
| !! | ATTATAATAAAAGACCTGTT+TGG | + | chr5.3:65079134-65079153 | MS.gene29527:intron | 20.0% |
| !! | CTTATTGAATTTGTAATGTT+TGG | - | chr5.3:65079363-65079382 | None:intergenic | 20.0% |
| !! | GATTATCAACTATCTTAAAT+GGG | - | chr5.3:65081104-65081123 | None:intergenic | 20.0% |
| !! | TAAATATGAATGACATACAA+AGG | - | chr5.3:65079512-65079531 | None:intergenic | 20.0% |
| !!! | AAAAAAATTATGGCTTTGTT+TGG | - | chr5.3:65079647-65079666 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTGGTTGATAT+AGG | + | chr5.3:65081056-65081075 | MS.gene29527:intron | 20.0% |
| !!! | AAATGATTTTGGTTGATATA+GGG | + | chr5.3:65081057-65081076 | MS.gene29527:intron | 20.0% |
| !!! | CAAGATTTTTAAAATAGACA+AGG | - | chr5.3:65080111-65080130 | None:intergenic | 20.0% |
| !!! | GATTTTCCAAGATATTTTTT+TGG | - | chr5.3:65080265-65080284 | None:intergenic | 20.0% |
| !!! | GTGATTGAATTTTTAGTTTA+TGG | - | chr5.3:65079560-65079579 | None:intergenic | 20.0% |
| !!! | TAATTGAAAGTATACAAACA+GGG | - | chr5.3:65081777-65081796 | None:intergenic | 20.0% |
| !!! | TTAATTGAAAGTATACAAAC+AGG | - | chr5.3:65081778-65081797 | None:intergenic | 20.0% |
| !!! | TTCAATTGTCTAATTTTTTC+CGG | + | chr5.3:65080018-65080037 | MS.gene29527:intron | 20.0% |
| ! | AAAATTAACAGTTACCAAAC+AGG | - | chr5.3:65079151-65079170 | None:intergenic | 25.0% |
| ! | AAAGAGCCAAAAAAATATCT+TGG | + | chr5.3:65080256-65080275 | MS.gene29527:intron | 25.0% |
| ! | AAGAAGATAGGATATTTAAC+AGG | + | chr5.3:65080766-65080785 | MS.gene29527:intron | 25.0% |
| ! | AATCCTTAAAATTAGTCAAG+TGG | + | chr5.3:65080281-65080300 | MS.gene29527:intron | 25.0% |
| ! | ACAAAAGACTACAAAACAAA+AGG | - | chr5.3:65080864-65080883 | None:intergenic | 25.0% |
| ! | AGAAAATTTAGTGAGAAACT+GGG | + | chr5.3:65080139-65080158 | MS.gene29527:intron | 25.0% |
| ! | ATCAGACAATAACACTTAAA+AGG | + | chr5.3:65081130-65081149 | MS.gene29527:CDS | 25.0% |
| ! | ATCATGAGTCTAATGAATTA+AGG | - | chr5.3:65078837-65078856 | None:intergenic | 25.0% |
| ! | ATCCTTAAAATTAGTCAAGT+GGG | + | chr5.3:65080282-65080301 | MS.gene29527:intron | 25.0% |
| ! | CAACAAGATAATCATTGTTA+AGG | - | chr5.3:65079673-65079692 | None:intergenic | 25.0% |
| ! | CATTGATATCAAGTTTCTAT+TGG | + | chr5.3:65080641-65080660 | MS.gene29527:intron | 25.0% |
| ! | GAAACTTGATATCAATGATA+AGG | - | chr5.3:65080638-65080657 | None:intergenic | 25.0% |
| ! | GGATTATCAACTATCTTAAA+TGG | - | chr5.3:65081105-65081124 | None:intergenic | 25.0% |
| ! | GTAATGTTTGGTAAAATTAG+CGG | - | chr5.3:65079351-65079370 | None:intergenic | 25.0% |
| ! | TAGAAAATTTAGTGAGAAAC+TGG | + | chr5.3:65080138-65080157 | MS.gene29527:intron | 25.0% |
| ! | TGATATCAATGATAAGGTAT+AGG | - | chr5.3:65080632-65080651 | None:intergenic | 25.0% |
| ! | TTAAATATCCTATCTTCTTC+CGG | - | chr5.3:65080765-65080784 | None:intergenic | 25.0% |
| ! | TTTATGAAGAAAGAATTTGG+CGG | + | chr5.3:65079737-65079756 | MS.gene29527:intron | 25.0% |
| ! | TTTCTAATGTTTGTGTAGTT+TGG | + | chr5.3:65080176-65080195 | MS.gene29527:intron | 25.0% |
| !! | ACATCAGTGTTGTTAAATAA+AGG | + | chr5.3:65081494-65081513 | MS.gene29527:intron | 25.0% |
| !! | ATATGATTATCTTAGTTTGG+AGG | + | chr5.3:65079879-65079898 | MS.gene29527:intron | 25.0% |
| !! | TCAATATTTTTCATGTCTCT+AGG | - | chr5.3:65081714-65081733 | None:intergenic | 25.0% |
| !!! | TAAGACATAAATTTGGTTTG+TGG | + | chr5.3:65079084-65079103 | MS.gene29527:intron | 25.0% |
| !!! | TTAAAACTTTTAGCTTACCA+TGG | + | chr5.3:65079023-65079042 | MS.gene29527:intron | 25.0% |
| !!! | TTATTTCTATGAGCTTATAG+CGG | + | chr5.3:65079186-65079205 | MS.gene29527:intron | 25.0% |
| !!! | TTTAAGATAGTTGATAATCC+AGG | + | chr5.3:65081105-65081124 | MS.gene29527:CDS | 25.0% |
| !!! | TTTTTCAATTGAGATTGCAA+GGG | - | chr5.3:65079269-65079288 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATTGAGATTGCA+AGG | - | chr5.3:65079270-65079289 | None:intergenic | 25.0% |
| AAAGATTATCTTTCGTGAGA+GGG | + | chr5.3:65079926-65079945 | MS.gene29527:intron | 30.0% | |
| AATGAGGTGTAGATTAAGTA+GGG | + | chr5.3:65079822-65079841 | MS.gene29527:intron | 30.0% | |
| ACACTTAAAAGGACTTATCA+AGG | + | chr5.3:65081141-65081160 | MS.gene29527:CDS | 30.0% | |
| ATAGCTTATAGCTTATAAGC+TGG | + | chr5.3:65079110-65079129 | MS.gene29527:intron | 30.0% | |
| ATCTGTTCATCAGAAAAATC+AGG | - | chr5.3:65081381-65081400 | None:intergenic | 30.0% | |
| ATCTTAAATGGGAAATTGCT+CGG | - | chr5.3:65081093-65081112 | None:intergenic | 30.0% | |
| ATTGATCAGAAAAACTCAAC+CGG | + | chr5.3:65078627-65078646 | MS.gene29527:CDS | 30.0% | |
| ATTTAACAGGTTGTACAATC+TGG | + | chr5.3:65080779-65080798 | MS.gene29527:intron | 30.0% | |
| CACAAGTACTTAGAAATAAG+GGG | + | chr5.3:65081868-65081887 | MS.gene29527:CDS | 30.0% | |
| CACGAAAGATAATCTTTAGT+TGG | - | chr5.3:65079923-65079942 | None:intergenic | 30.0% | |
| CCACAAGTACTTAGAAATAA+GGG | + | chr5.3:65081867-65081886 | MS.gene29527:CDS | 30.0% | |
| GAAAATGATTGTTACGAAAC+AGG | - | chr5.3:65078933-65078952 | None:intergenic | 30.0% | |
| GTATTAATATGCTCAGAATC+AGG | - | chr5.3:65080934-65080953 | None:intergenic | 30.0% | |
| TAAAGATTATCTTTCGTGAG+AGG | + | chr5.3:65079925-65079944 | MS.gene29527:intron | 30.0% | |
| TAATGAGGTGTAGATTAAGT+AGG | + | chr5.3:65079821-65079840 | MS.gene29527:intron | 30.0% | |
| TCCACAAGTACTTAGAAATA+AGG | + | chr5.3:65081866-65081885 | MS.gene29527:CDS | 30.0% | |
| TGATAAGGTATAGGAACAAA+AGG | - | chr5.3:65080623-65080642 | None:intergenic | 30.0% | |
| TGATATCAAGTTTCTATTGG+TGG | + | chr5.3:65080644-65080663 | MS.gene29527:intron | 30.0% | |
| TTATCAAGGTGAAGAAATTC+AGG | + | chr5.3:65081155-65081174 | MS.gene29527:CDS | 30.0% | |
| TTATGAAGAAAGAATTTGGC+GGG | + | chr5.3:65079738-65079757 | MS.gene29527:intron | 30.0% | |
| TTCTCAAAAAGGATTCGAAT+GGG | + | chr5.3:65080222-65080241 | MS.gene29527:intron | 30.0% | |
| TTGTTAAATAAAGGCTACAG+CGG | + | chr5.3:65081503-65081522 | MS.gene29527:intron | 30.0% | |
| TTTCTCAAAAAGGATTCGAA+TGG | + | chr5.3:65080221-65080240 | MS.gene29527:intron | 30.0% | |
| TTTGTGTAGTTTGGAAACTT+AGG | + | chr5.3:65080185-65080204 | MS.gene29527:intron | 30.0% | |
| ! | AACCCACTTGACTAATTTTA+AGG | - | chr5.3:65080287-65080306 | None:intergenic | 30.0% |
| ! | AGAAGTACATACTGAAAATC+TGG | - | chr5.3:65081417-65081436 | None:intergenic | 30.0% |
| ! | CAATTTTACCCTGTAATCTT+AGG | + | chr5.3:65079051-65079070 | MS.gene29527:intron | 30.0% |
| ! | TAACTGATAAACTAGCTTAG+AGG | - | chr5.3:65079609-65079628 | None:intergenic | 30.0% |
| ! | TTAACTTTCTGTTTGAGGTT+GGG | + | chr5.3:65080361-65080380 | MS.gene29527:intron | 30.0% |
| ! | TTTTACCTCGAGAGTTTTTT+CGG | + | chr5.3:65080730-65080749 | MS.gene29527:intron | 30.0% |
| ! | TTTTCAATTGAGATTGCAAG+GGG | - | chr5.3:65079268-65079287 | None:intergenic | 30.0% |
| !! | AATTTTCAGGGTTTTGTGTT+AGG | + | chr5.3:65079958-65079977 | MS.gene29527:intron | 30.0% |
| !! | TGGTTGGTAAGACATAAATT+TGG | + | chr5.3:65079077-65079096 | MS.gene29527:intron | 30.0% |
| !!! | AATTGTCTAATTTTTTCCGG+TGG | + | chr5.3:65080021-65080040 | MS.gene29527:intron | 30.0% |
| !!! | GCATTCAATGTTTTAATCCA+GGG | + | chr5.3:65081469-65081488 | MS.gene29527:intron | 30.0% |
| !!! | GGTGTGATTTTTTCTCAAAA+AGG | + | chr5.3:65080211-65080230 | MS.gene29527:intron | 30.0% |
| !!! | GTTTTAAAAAGCAGCTATAG+TGG | + | chr5.3:65081592-65081611 | MS.gene29527:intron | 30.0% |
| !!! | TGCATTCAATGTTTTAATCC+AGG | + | chr5.3:65081468-65081487 | MS.gene29527:intron | 30.0% |
| AAAAGGATTCGAATGGGAAA+AGG | + | chr5.3:65080228-65080247 | MS.gene29527:intron | 35.0% | |
| AAGATTATCTTTCGTGAGAG+GGG | + | chr5.3:65079927-65079946 | MS.gene29527:intron | 35.0% | |
| AAGTTAACTCTCAACAGAAC+AGG | - | chr5.3:65080348-65080367 | None:intergenic | 35.0% | |
| AATCTACACCTCATTACCAT+CGG | - | chr5.3:65079817-65079836 | None:intergenic | 35.0% | |
| ACAGAAGAAAAGTGAAACGT+AGG | - | chr5.3:65078706-65078725 | None:intergenic | 35.0% | |
| AGAAACTGGGTGTGATTATT+TGG | + | chr5.3:65080152-65080171 | MS.gene29527:intron | 35.0% | |
| ATGAACAGATTCCTTATGAC+GGG | + | chr5.3:65081391-65081410 | MS.gene29527:CDS | 35.0% | |
| CAAGGATAGTAGAGAATACT+TGG | + | chr5.3:65081936-65081955 | MS.gene29527:CDS | 35.0% | |
| CATCCAAATCCCTGTAAAAA+TGG | - | chr5.3:65081828-65081847 | None:intergenic | 35.0% | |
| CCAATCTAAATTTCAGATCG+CGG | - | chr5.3:65081663-65081682 | None:intergenic | 35.0% | |
| CGATCATCAAGATGATGATA+AGG | + | chr5.3:65081218-65081237 | MS.gene29527:CDS | 35.0% | |
| GAGAGTTAACTTTCTGTTTG+AGG | + | chr5.3:65080356-65080375 | MS.gene29527:intron | 35.0% | |
| GATGAACAGATTCCTTATGA+CGG | + | chr5.3:65081390-65081409 | MS.gene29527:CDS | 35.0% | |
| GCAGAATCTCATTCAAACAA+TGG | - | chr5.3:65081806-65081825 | None:intergenic | 35.0% | |
| GTAGTTTGGAAACTTAGGAA+CGG | + | chr5.3:65080190-65080209 | MS.gene29527:intron | 35.0% | |
| TGTCGATAACAATCTCATCT+GGG | - | chr5.3:65081341-65081360 | None:intergenic | 35.0% | |
| TTCGAAATCTCCAAATTGGA+AGG | - | chr5.3:65080086-65080105 | None:intergenic | 35.0% | |
| TTCTGTTTGGTAAAACACAG+CGG | - | chr5.3:65079466-65079485 | None:intergenic | 35.0% | |
| TTGATCAGAAAAACTCAACC+GGG | + | chr5.3:65078628-65078647 | MS.gene29527:CDS | 35.0% | |
| ! | AGTGTTATTGTCTGATTTCC+TGG | - | chr5.3:65081126-65081145 | None:intergenic | 35.0% |
| ! | AGTTCTATGTACTTGTTGAG+GGG | + | chr5.3:65080392-65080411 | MS.gene29527:intron | 35.0% |
| ! | AGTTGAGTTCATCTAGTTTC+AGG | + | chr5.3:65080557-65080576 | MS.gene29527:intron | 35.0% |
| ! | ATAGTAGAGAATACTTGGTG+TGG | + | chr5.3:65081941-65081960 | MS.gene29527:CDS | 35.0% |
| ! | CAGTTCTATGTACTTGTTGA+GGG | + | chr5.3:65080391-65080410 | MS.gene29527:intron | 35.0% |
| ! | CGCGATCTGAAATTTAGATT+GGG | + | chr5.3:65081661-65081680 | MS.gene29527:intron | 35.0% |
| ! | GTTAACTTTCTGTTTGAGGT+TGG | + | chr5.3:65080360-65080379 | MS.gene29527:intron | 35.0% |
| ! | GTTGAGTTCATCTAGTTTCA+GGG | + | chr5.3:65080558-65080577 | MS.gene29527:intron | 35.0% |
| ! | TAACTTTCTGTTTGAGGTTG+GGG | + | chr5.3:65080362-65080381 | MS.gene29527:intron | 35.0% |
| ! | TCAGCTATAAGCTAGCTTAT+AGG | + | chr5.3:65079398-65079417 | MS.gene29527:intron | 35.0% |
| ! | TCAGTGTTTCTAAGAAGGAT+GGG | + | chr5.3:65081286-65081305 | MS.gene29527:CDS | 35.0% |
| ! | TCAGTTCTATGTACTTGTTG+AGG | + | chr5.3:65080390-65080409 | MS.gene29527:intron | 35.0% |
| ! | TGATTTCCGATTCGATGAAA+CGG | - | chr5.3:65078768-65078787 | None:intergenic | 35.0% |
| ! | TTAGAAACACTGACTGAAAG+TGG | - | chr5.3:65081279-65081298 | None:intergenic | 35.0% |
| ! | TTCAGTCAGTGTTTCTAAGA+AGG | + | chr5.3:65081281-65081300 | MS.gene29527:CDS | 35.0% |
| ! | TTTTTACAGGGATTTGGATG+AGG | + | chr5.3:65081828-65081847 | MS.gene29527:intron | 35.0% |
| !! | AGTGAGACTTTGAAATGTCT+TGG | + | chr5.3:65080049-65080068 | MS.gene29527:intron | 35.0% |
| !! | CCCTTATTTCTAAGTACTTG+TGG | - | chr5.3:65081870-65081889 | None:intergenic | 35.0% |
| !! | GTGAGACTTTGAAATGTCTT+GGG | + | chr5.3:65080050-65080069 | MS.gene29527:intron | 35.0% |
| !! | TGAGACTTTGAAATGTCTTG+GGG | + | chr5.3:65080051-65080070 | MS.gene29527:intron | 35.0% |
| !! | TGCAAGAAATTTGTTGTGCT+TGG | - | chr5.3:65081901-65081920 | None:intergenic | 35.0% |
| !!! | AGGGGTTGGTTTTAATTTTC+AGG | + | chr5.3:65079945-65079964 | MS.gene29527:intron | 35.0% |
| !!! | ATTTTGGTTGATATAGGGTG+AGG | + | chr5.3:65081062-65081081 | MS.gene29527:intron | 35.0% |
| !!! | GAGATTCTGCCATTTTTACA+GGG | + | chr5.3:65081816-65081835 | MS.gene29527:intron | 35.0% |
| !!! | GGGGTTGGTTTTAATTTTCA+GGG | + | chr5.3:65079946-65079965 | MS.gene29527:intron | 35.0% |
| !!! | TCTAATTTTTTCCGGTGGTT+TGG | + | chr5.3:65080026-65080045 | MS.gene29527:intron | 35.0% |
| !!! | TGAGATTCTGCCATTTTTAC+AGG | + | chr5.3:65081815-65081834 | MS.gene29527:intron | 35.0% |
| !!! | TTTACCTCGAGAGTTTTTTC+GGG | + | chr5.3:65080731-65080750 | MS.gene29527:intron | 35.0% |
| AACACAACTGAACTCCAAAG+AGG | - | chr5.3:65081313-65081332 | None:intergenic | 40.0% | |
| AACCAGAGCCTAAGATTACA+GGG | - | chr5.3:65079062-65079081 | None:intergenic | 40.0% | |
| AAGTAGGGCTGTGGATTTAT+GGG | + | chr5.3:65079837-65079856 | MS.gene29527:intron | 40.0% | |
| ACACAACTGAACTCCAAAGA+GGG | - | chr5.3:65081312-65081331 | None:intergenic | 40.0% | |
| ACAGGTTGTACAATCTGGTT+TGG | + | chr5.3:65080784-65080803 | MS.gene29527:intron | 40.0% | |
| AGGGTAAAATTGAGAGACCA+TGG | - | chr5.3:65079043-65079062 | None:intergenic | 40.0% | |
| CAAGTCAAGCACTTTCGTTA+GGG | + | chr5.3:65078585-65078604 | MS.gene29527:CDS | 40.0% | |
| CTGTCGATAACAATCTCATC+TGG | - | chr5.3:65081342-65081361 | None:intergenic | 40.0% | |
| GAAACGGAGAAGAATATCGT+CGG | - | chr5.3:65078752-65078771 | None:intergenic | 40.0% | |
| GACTCTTTGACAGAGTTACT+CGG | - | chr5.3:65079777-65079796 | None:intergenic | 40.0% | |
| GCATGAGTACATGATCAACA+AGG | + | chr5.3:65081918-65081937 | MS.gene29527:CDS | 40.0% | |
| GCTTTCTCTTTCATCTTGTC+TGG | + | chr5.3:65080594-65080613 | MS.gene29527:intron | 40.0% | |
| GGAGTTCGAAATCTCCAAAT+TGG | - | chr5.3:65080090-65080109 | None:intergenic | 40.0% | |
| GTAGAATTCCGGAAGAAGAT+AGG | + | chr5.3:65080754-65080773 | MS.gene29527:intron | 40.0% | |
| TAACAACACTGATGTAACCC+TGG | - | chr5.3:65081489-65081508 | None:intergenic | 40.0% | |
| TAAGTAGGGCTGTGGATTTA+TGG | + | chr5.3:65079836-65079855 | MS.gene29527:intron | 40.0% | |
| TCTTCACCAGTAACCAAATC+AGG | - | chr5.3:65081195-65081214 | None:intergenic | 40.0% | |
| TCTTCTCCGTTTCATCGAAT+CGG | + | chr5.3:65078759-65078778 | MS.gene29527:CDS | 40.0% | |
| TGATGTTGCAGTTCAGATTG+TGG | + | chr5.3:65081731-65081750 | MS.gene29527:intron | 40.0% | |
| ! | AGCTAGCTTATAGCTGATAG+CGG | - | chr5.3:65079395-65079414 | None:intergenic | 40.0% |
| ! | CAGGTTGTACAATCTGGTTT+GGG | + | chr5.3:65080785-65080804 | MS.gene29527:intron | 40.0% |
| ! | CCGCGATCTGAAATTTAGAT+TGG | + | chr5.3:65081660-65081679 | MS.gene29527:intron | 40.0% |
| ! | GCAAACTTTTGCTGCAAGTT+TGG | + | chr5.3:65080675-65080694 | MS.gene29527:intron | 40.0% |
| ! | GTCAGTGTTTCTAAGAAGGA+TGG | + | chr5.3:65081285-65081304 | MS.gene29527:CDS | 40.0% |
| ! | GTTCTATGTACTTGTTGAGG+GGG | + | chr5.3:65080393-65080412 | MS.gene29527:intron | 40.0% |
| ! | TGCAGTTCAGATTGTGGTTT+TGG | + | chr5.3:65081737-65081756 | MS.gene29527:intron | 40.0% |
| ! | TTCTATGTACTTGTTGAGGG+GGG | + | chr5.3:65080394-65080413 | MS.gene29527:intron | 40.0% |
| !! | AGGTGAAGAAATTCAGGTTG+AGG | + | chr5.3:65081161-65081180 | MS.gene29527:CDS | 40.0% |
| !! | CTCTGTCAAAGAGTCGTTTT+TGG | + | chr5.3:65079782-65079801 | MS.gene29527:intron | 40.0% |
| !! | TTTCAGGGTTTTGTGTTAGG+AGG | + | chr5.3:65079961-65079980 | MS.gene29527:intron | 40.0% |
| !!! | CTGCCATTTTTACAGGGATT+TGG | + | chr5.3:65081822-65081841 | MS.gene29527:intron | 40.0% |
| !!! | GTTTTTTCGGGGTAGAATTC+CGG | + | chr5.3:65080743-65080762 | MS.gene29527:intron | 40.0% |
| !!! | TGCACTCTGGAGTTTTTCAA+GGG | + | chr5.3:65080432-65080451 | MS.gene29527:intron | 40.0% |
| !!! | TTACCTCGAGAGTTTTTTCG+GGG | + | chr5.3:65080732-65080751 | MS.gene29527:intron | 40.0% |
| !!! | TTGCACTCTGGAGTTTTTCA+AGG | + | chr5.3:65080431-65080450 | MS.gene29527:intron | 40.0% |
| AAAGAATTTGGCGGGAGATG+GGG | + | chr5.3:65079746-65079765 | MS.gene29527:intron | 45.0% | |
| AAAGTCTCACTCCAAACCAC+CGG | - | chr5.3:65080040-65080059 | None:intergenic | 45.0% | |
| ACGTAGGAACAAATGAACCC+TGG | - | chr5.3:65078690-65078709 | None:intergenic | 45.0% | |
| ACTCTCAACAGAACAGGTCA+AGG | - | chr5.3:65080342-65080361 | None:intergenic | 45.0% | |
| AGAAAGAATTTGGCGGGAGA+TGG | + | chr5.3:65079744-65079763 | MS.gene29527:intron | 45.0% | |
| AGAAGAATATCGTCGGAGGT+GGG | - | chr5.3:65078745-65078764 | None:intergenic | 45.0% | |
| ATCGGAAATCACTTGTGCTC+AGG | + | chr5.3:65078777-65078796 | MS.gene29527:CDS | 45.0% | |
| CAACCAGAGCCTAAGATTAC+AGG | - | chr5.3:65079063-65079082 | None:intergenic | 45.0% | |
| CCAAGTCAAGCACTTTCGTT+AGG | + | chr5.3:65078584-65078603 | MS.gene29527:CDS | 45.0% | |
| CTCTCAACAGAACAGGTCAA+GGG | - | chr5.3:65080341-65080360 | None:intergenic | 45.0% | |
| GAAAGAATTTGGCGGGAGAT+GGG | + | chr5.3:65079745-65079764 | MS.gene29527:intron | 45.0% | |
| GCTCAGGAAACCGATGATTT+CGG | + | chr5.3:65078793-65078812 | MS.gene29527:CDS | 45.0% | |
| GTGTAGATTAAGTAGGGCTG+TGG | + | chr5.3:65079828-65079847 | MS.gene29527:intron | 45.0% | |
| GTTAGGAGGATGTGGTACTT+TGG | + | chr5.3:65079975-65079994 | MS.gene29527:intron | 45.0% | |
| GTTTCAGGGTTACTTCGTCA+AGG | + | chr5.3:65080572-65080591 | MS.gene29527:intron | 45.0% | |
| GTTTCGTTCGCCTTCCAATT+TGG | + | chr5.3:65080073-65080092 | MS.gene29527:intron | 45.0% | |
| TACCCTGTAATCTTAGGCTC+TGG | + | chr5.3:65079057-65079076 | MS.gene29527:intron | 45.0% | |
| TATGCTCAGAATCAGGCACA+AGG | - | chr5.3:65080927-65080946 | None:intergenic | 45.0% | |
| TGAAAATCTGGCCCGTCATA+AGG | - | chr5.3:65081405-65081424 | None:intergenic | 45.0% | |
| TGAGGTTCACATGCCTGATT+TGG | + | chr5.3:65081179-65081198 | MS.gene29527:CDS | 45.0% | |
| TGCTATAGCACTTTGTGTGG+CGG | + | chr5.3:65081615-65081634 | MS.gene29527:intron | 45.0% | |
| TGTTGCTAACCTGTACTGCT+TGG | + | chr5.3:65081687-65081706 | MS.gene29527:intron | 45.0% | |
| TTATCTTTCGTGAGAGGGGT+TGG | + | chr5.3:65079931-65079950 | MS.gene29527:intron | 45.0% | |
| ! | ACTTACAGCGCCGAAATCAT+CGG | - | chr5.3:65078806-65078825 | None:intergenic | 45.0% |
| ! | CAGCTAGTTAGTCTCAGGTT+TGG | + | chr5.3:65080704-65080723 | MS.gene29527:intron | 45.0% |
| ! | CTGTAATCTTAGGCTCTGGT+TGG | + | chr5.3:65079061-65079080 | MS.gene29527:intron | 45.0% |
| ! | TGTAGCAGCTAGTTAGTCTC+AGG | + | chr5.3:65080699-65080718 | MS.gene29527:intron | 45.0% |
| !! | CACATGCCTGATTTGGTTAC+TGG | + | chr5.3:65081186-65081205 | MS.gene29527:CDS | 45.0% |
| !! | CCTAACGAAAGTGCTTGACT+TGG | - | chr5.3:65078587-65078606 | None:intergenic | 45.0% |
| !! | GGTTTTGTGTTAGGAGGATG+TGG | + | chr5.3:65079967-65079986 | MS.gene29527:intron | 45.0% |
| !! | GTTGTACAATCTGGTTTGGG+TGG | + | chr5.3:65080788-65080807 | MS.gene29527:intron | 45.0% |
| !! | GTTTTGAGCTTGGCATGGTT+AGG | + | chr5.3:65080818-65080837 | MS.gene29527:intron | 45.0% |
| !! | TCAAGTTTCTATTGGTGGCG+TGG | + | chr5.3:65080649-65080668 | MS.gene29527:intron | 45.0% |
| !! | TGAACCCTGGTATCGATTGA+CGG | - | chr5.3:65078677-65078696 | None:intergenic | 45.0% |
| !! | TGGTGCTATAGCACTTTGTG+TGG | + | chr5.3:65081612-65081631 | MS.gene29527:intron | 45.0% |
| !!! | AGTTTTTCAAGGGGTGCTTG+TGG | + | chr5.3:65080442-65080461 | MS.gene29527:intron | 45.0% |
| !!! | GCACTCTGGAGTTTTTCAAG+GGG | + | chr5.3:65080433-65080452 | MS.gene29527:intron | 45.0% |
| !!! | TGACAGTTTTGAGCTTGGCA+TGG | + | chr5.3:65080813-65080832 | MS.gene29527:intron | 45.0% |
| !!! | TGGTGTGACAGTTTTGAGCT+TGG | + | chr5.3:65080808-65080827 | MS.gene29527:intron | 45.0% |
| !!! | TTTTTGGTCTTGAGCACCGA+TGG | + | chr5.3:65079798-65079817 | MS.gene29527:intron | 45.0% |
| AAGAATTTGGCGGGAGATGG+GGG | + | chr5.3:65079747-65079766 | MS.gene29527:intron | 50.0% | |
| ACGGAGAAGAATATCGTCGG+AGG | - | chr5.3:65078749-65078768 | None:intergenic | 50.0% | |
| CTACCCCGAAAAAACTCTCG+AGG | - | chr5.3:65080738-65080757 | None:intergenic | 50.0% | |
| GAGAAGAATATCGTCGGAGG+TGG | - | chr5.3:65078746-65078765 | None:intergenic | 50.0% | |
| TAAGAAGGATGGGCCCTCTT+TGG | + | chr5.3:65081296-65081315 | MS.gene29527:CDS | 50.0% | |
| TTTCTCCTGCTGCAGTAGTG+AGG | + | chr5.3:65080511-65080530 | MS.gene29527:intron | 50.0% | |
| ! | TATGTACTTGTTGAGGGGGG+TGG | + | chr5.3:65080397-65080416 | MS.gene29527:intron | 50.0% |
| !! | CTTGAGCACCGATGGTAATG+AGG | + | chr5.3:65079806-65079825 | MS.gene29527:intron | 50.0% |
| !! | GTGTTGCTTCAGTTGCACTC+TGG | + | chr5.3:65080419-65080438 | MS.gene29527:intron | 50.0% |
| !! | TCTCTAGGACCAAGCAGTAC+AGG | - | chr5.3:65081699-65081718 | None:intergenic | 50.0% |
| GAGGTCTGAGTCTGACTGCT+TGG | + | chr5.3:65080530-65080549 | MS.gene29527:intron | 55.0% | |
| TCAGACCTCACTACTGCAGC+AGG | - | chr5.3:65080519-65080538 | None:intergenic | 55.0% | |
| !! | ACCCTGGTATCGATTGACGG+CGG | - | chr5.3:65078674-65078693 | None:intergenic | 55.0% |
| !! | GTTTCTATTGGTGGCGTGGC+AGG | + | chr5.3:65080653-65080672 | MS.gene29527:intron | 55.0% |
| ATTGACGGCGGCGGAAAGCA+CGG | - | chr5.3:65078662-65078681 | None:intergenic | 60.0% | |
| GCCGCCGTCAATCGATACCA+GGG | + | chr5.3:65078670-65078689 | MS.gene29527:CDS | 60.0% | |
| !! | CTGGTATCGATTGACGGCGG+CGG | - | chr5.3:65078671-65078690 | None:intergenic | 60.0% |
| CGCCGCCGTCAATCGATACC+AGG | + | chr5.3:65078669-65078688 | MS.gene29527:CDS | 65.0% | |
| ! | GAAAGCACGGCGCGATGACC+CGG | - | chr5.3:65078649-65078668 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 65078559 | 65081996 | 65078559 | ID=MS.gene29527 |
| chr5.3 | mRNA | 65078559 | 65081996 | 65078559 | ID=MS.gene29527.t1;Parent=MS.gene29527 |
| chr5.3 | exon | 65078559 | 65078819 | 65078559 | ID=MS.gene29527.t1.exon1;Parent=MS.gene29527.t1 |
| chr5.3 | CDS | 65078559 | 65078819 | 65078559 | ID=cds.MS.gene29527.t1;Parent=MS.gene29527.t1 |
| chr5.3 | exon | 65081078 | 65081424 | 65081078 | ID=MS.gene29527.t1.exon2;Parent=MS.gene29527.t1 |
| chr5.3 | CDS | 65081078 | 65081424 | 65081078 | ID=cds.MS.gene29527.t1;Parent=MS.gene29527.t1 |
| chr5.3 | exon | 65081837 | 65081996 | 65081837 | ID=MS.gene29527.t1.exon3;Parent=MS.gene29527.t1 |
| chr5.3 | CDS | 65081837 | 65081996 | 65081837 | ID=cds.MS.gene29527.t1;Parent=MS.gene29527.t1 |
| Gene Sequence |
| Protein sequence |
