Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29568.t1 | XP_003616526.1 | 96.9 | 576 | 16 | 1 | 1 | 574 | 1 | 576 | 0.00E+00 | 1112.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29568.t1 | F4K295 | 59.9 | 544 | 202 | 11 | 42 | 572 | 63 | 603 | 7.0e-168 | 592.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29568.t1 | F6LPU5 | 96.9 | 576 | 16 | 1 | 1 | 574 | 1 | 576 | 0.0e+00 | 1112.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene29568 | 0.800619 | 1.32E-48 | -1.69E-46 |
| MS.gene050297 | MS.gene29568 | 0.818704 | 1.71E-52 | -1.69E-46 |
| MS.gene051955 | MS.gene29568 | 0.834377 | 3.11E-56 | -1.69E-46 |
| MS.gene052143 | MS.gene29568 | 0.815429 | 9.29E-52 | -1.69E-46 |
| MS.gene052308 | MS.gene29568 | 0.824798 | 6.64E-54 | -1.69E-46 |
| MS.gene052367 | MS.gene29568 | 0.831283 | 1.82E-55 | -1.69E-46 |
| MS.gene053348 | MS.gene29568 | 0.80286 | 4.59E-49 | -1.69E-46 |
| MS.gene055308 | MS.gene29568 | 0.800834 | 1.20E-48 | -1.69E-46 |
| MS.gene055578 | MS.gene29568 | 0.848584 | 5.58E-60 | -1.69E-46 |
| MS.gene055579 | MS.gene29568 | 0.837134 | 6.22E-57 | -1.69E-46 |
| MS.gene055957 | MS.gene29568 | 0.819842 | 9.39E-53 | -1.69E-46 |
| MS.gene056041 | MS.gene29568 | 0.867109 | 1.74E-65 | -1.69E-46 |
| MS.gene056042 | MS.gene29568 | 0.830832 | 2.35E-55 | -1.69E-46 |
| MS.gene056526 | MS.gene29568 | 0.817905 | 2.59E-52 | -1.69E-46 |
| MS.gene057458 | MS.gene29568 | 0.801319 | 9.52E-49 | -1.69E-46 |
| MS.gene058196 | MS.gene29568 | 0.822722 | 2.03E-53 | -1.69E-46 |
| MS.gene058198 | MS.gene29568 | 0.801032 | 1.09E-48 | -1.69E-46 |
| MS.gene058853 | MS.gene29568 | 0.835819 | 1.34E-56 | -1.69E-46 |
| MS.gene059553 | MS.gene29568 | 0.809019 | 2.33E-50 | -1.69E-46 |
| MS.gene060473 | MS.gene29568 | 0.867033 | 1.84E-65 | -1.69E-46 |
| MS.gene060565 | MS.gene29568 | 0.859757 | 3.32E-63 | -1.69E-46 |
| MS.gene06057 | MS.gene29568 | 0.809578 | 1.77E-50 | -1.69E-46 |
| MS.gene060825 | MS.gene29568 | 0.807282 | 5.45E-50 | -1.69E-46 |
| MS.gene061099 | MS.gene29568 | 0.832089 | 1.15E-55 | -1.69E-46 |
| MS.gene061260 | MS.gene29568 | 0.856922 | 2.32E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29568.t1 | MTR_5g081410 | 96.875 | 576 | 16 | 1 | 1 | 574 | 1 | 576 | 0.0 | 1155 |
| MS.gene29568.t1 | MTR_3g069590 | 68.543 | 604 | 145 | 13 | 1 | 570 | 1 | 593 | 0.0 | 782 |
| MS.gene29568.t1 | MTR_7g065220 | 61.414 | 495 | 186 | 2 | 44 | 537 | 148 | 638 | 0.0 | 633 |
| MS.gene29568.t1 | MTR_3g069590 | 70.023 | 437 | 99 | 6 | 1 | 411 | 1 | 431 | 0.0 | 599 |
| MS.gene29568.t1 | MTR_4g019770 | 62.558 | 430 | 153 | 2 | 42 | 467 | 54 | 479 | 0.0 | 547 |
| MS.gene29568.t1 | MTR_4g075640 | 52.893 | 484 | 196 | 7 | 82 | 556 | 89 | 549 | 5.90e-164 | 479 |
| MS.gene29568.t1 | MTR_8g030850 | 56.267 | 375 | 143 | 4 | 82 | 443 | 99 | 465 | 5.03e-138 | 409 |
| MS.gene29568.t1 | MTR_7g077690 | 51.914 | 418 | 137 | 4 | 82 | 443 | 115 | 524 | 2.28e-131 | 394 |
| MS.gene29568.t1 | MTR_6g087700 | 49.744 | 390 | 168 | 6 | 82 | 462 | 98 | 468 | 1.37e-128 | 388 |
| MS.gene29568.t1 | MTR_2g101830 | 49.311 | 363 | 165 | 4 | 82 | 443 | 88 | 432 | 9.29e-123 | 372 |
| MS.gene29568.t1 | MTR_5g025960 | 46.133 | 362 | 185 | 2 | 82 | 443 | 120 | 471 | 5.08e-107 | 332 |
| MS.gene29568.t1 | MTR_4g013165 | 46.708 | 319 | 149 | 4 | 131 | 448 | 1 | 299 | 5.61e-100 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29568.t1 | AT5G05940 | 62.574 | 505 | 177 | 9 | 42 | 535 | 63 | 566 | 0.0 | 620 |
| MS.gene29568.t1 | AT5G02010 | 62.971 | 478 | 141 | 9 | 63 | 530 | 52 | 503 | 0.0 | 598 |
| MS.gene29568.t1 | AT3G55660 | 53.565 | 519 | 203 | 7 | 42 | 532 | 71 | 579 | 1.90e-178 | 516 |
| MS.gene29568.t1 | AT5G05940 | 65.416 | 373 | 126 | 2 | 42 | 411 | 63 | 435 | 2.36e-176 | 508 |
| MS.gene29568.t1 | AT4G38430 | 56.674 | 427 | 171 | 5 | 67 | 489 | 80 | 496 | 5.71e-165 | 481 |
| MS.gene29568.t1 | AT3G55660 | 59.517 | 373 | 142 | 3 | 42 | 411 | 71 | 437 | 6.99e-153 | 446 |
| MS.gene29568.t1 | AT4G00460 | 57.447 | 376 | 145 | 5 | 82 | 450 | 106 | 473 | 3.83e-143 | 422 |
| MS.gene29568.t1 | AT4G00460 | 57.447 | 376 | 145 | 5 | 82 | 450 | 106 | 473 | 3.83e-143 | 422 |
| MS.gene29568.t1 | AT1G01700 | 58.266 | 369 | 139 | 5 | 82 | 443 | 118 | 478 | 2.18e-140 | 416 |
| MS.gene29568.t1 | AT1G01700 | 53.885 | 399 | 139 | 6 | 82 | 443 | 118 | 508 | 6.05e-134 | 400 |
| MS.gene29568.t1 | AT3G24620 | 52.055 | 365 | 155 | 4 | 82 | 445 | 87 | 432 | 6.14e-133 | 398 |
| MS.gene29568.t1 | AT2G45890 | 51.979 | 379 | 161 | 6 | 82 | 450 | 95 | 462 | 1.31e-126 | 380 |
| MS.gene29568.t1 | AT4G13240 | 49.591 | 367 | 165 | 4 | 82 | 447 | 76 | 423 | 2.20e-126 | 381 |
| MS.gene29568.t1 | AT1G52240 | 51.087 | 368 | 157 | 5 | 82 | 448 | 106 | 451 | 1.29e-122 | 372 |
| MS.gene29568.t1 | AT1G79860 | 49.036 | 363 | 164 | 5 | 82 | 443 | 94 | 436 | 1.52e-121 | 369 |
| MS.gene29568.t1 | AT4G00460 | 54.252 | 341 | 141 | 5 | 117 | 450 | 8 | 340 | 4.98e-121 | 361 |
| MS.gene29568.t1 | AT1G01700 | 54.131 | 351 | 139 | 6 | 82 | 418 | 118 | 460 | 1.16e-117 | 357 |
| MS.gene29568.t1 | AT3G16130 | 48.800 | 375 | 174 | 5 | 75 | 448 | 85 | 442 | 4.14e-117 | 358 |
| MS.gene29568.t1 | AT5G19560 | 47.956 | 367 | 173 | 4 | 82 | 447 | 46 | 395 | 1.80e-115 | 352 |
| MS.gene29568.t1 | AT5G19560 | 47.956 | 367 | 173 | 4 | 82 | 447 | 46 | 395 | 1.80e-115 | 352 |
| MS.gene29568.t1 | AT5G19560 | 47.956 | 367 | 173 | 4 | 82 | 447 | 65 | 414 | 4.88e-115 | 352 |
| MS.gene29568.t1 | AT5G19560 | 46.526 | 331 | 159 | 4 | 82 | 411 | 65 | 378 | 1.81e-99 | 307 |
| MS.gene29568.t1 | AT1G31650 | 42.162 | 370 | 195 | 3 | 82 | 446 | 110 | 465 | 4.66e-98 | 309 |
| MS.gene29568.t1 | AT1G31650 | 42.162 | 370 | 195 | 3 | 82 | 446 | 138 | 493 | 1.72e-97 | 308 |
| MS.gene29568.t1 | AT4G00460 | 58.772 | 228 | 89 | 3 | 82 | 306 | 106 | 331 | 2.75e-82 | 261 |
| MS.gene29568.t1 | AT1G01700 | 60.748 | 214 | 81 | 2 | 82 | 292 | 118 | 331 | 3.02e-80 | 257 |
| MS.gene29568.t1 | AT1G01700 | 60.748 | 214 | 81 | 2 | 82 | 292 | 118 | 331 | 3.02e-80 | 257 |
| MS.gene29568.t1 | AT5G19560 | 45.324 | 278 | 134 | 4 | 171 | 447 | 5 | 265 | 2.53e-77 | 249 |
Find 109 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGGCTGCTTTCAGTATT+TGG | 0.134248 | 5.2:+69544442 | None:intergenic |
| TAACATGGTTTCACAGAAAA+AGG | 0.190047 | 5.2:-69543359 | MS.gene29568:CDS |
| TTCATCTGATTTGCTGCATT+TGG | 0.225466 | 5.2:+69546152 | None:intergenic |
| GGAAGTTCCCGAGTCGTATT+TGG | 0.241485 | 5.2:-69544391 | MS.gene29568:CDS |
| GGTCTTCTTCATTTCCTATT+AGG | 0.245693 | 5.2:-69546188 | MS.gene29568:CDS |
| ACTCAACACAAAGCAAAATT+TGG | 0.247443 | 5.2:-69543304 | MS.gene29568:CDS |
| AGAAAGCTATTCAAGAGTTT+TGG | 0.254846 | 5.2:-69543479 | MS.gene29568:CDS |
| CAACATGTAGGAACTGTATT+TGG | 0.265120 | 5.2:-69545477 | MS.gene29568:intron |
| TCTTGAATAGCTTTCTAGTA+TGG | 0.268560 | 5.2:+69543486 | None:intergenic |
| AAACCTCAACGTCGCGGTTT+TGG | 0.279389 | 5.2:-69543193 | MS.gene29568:CDS |
| TTGTTGAGTTAATGCCTTCT+TGG | 0.293497 | 5.2:-69545365 | MS.gene29568:CDS |
| TTGTTATTGTTGTGGATAAA+AGG | 0.311337 | 5.2:+69543226 | None:intergenic |
| GCAGGAGGCACACGGGGTAC+TGG | 0.311400 | 5.2:+69544519 | None:intergenic |
| GAACTGTATTTGGACAATTA+TGG | 0.318046 | 5.2:-69545467 | MS.gene29568:CDS |
| GTTGCACTGCTATGGAGTTT+TGG | 0.323799 | 5.2:-69544632 | MS.gene29568:CDS |
| TGGAAATCTATCTGAATGTT+TGG | 0.339488 | 5.2:+69543396 | None:intergenic |
| GACATAGTGCCCTTCCTAAT+AGG | 0.352007 | 5.2:+69546174 | None:intergenic |
| TTCATTGAAGCAGCGCTTCC+CGG | 0.357161 | 5.2:-69543880 | MS.gene29568:CDS |
| TTATCATCAACTTGAGAAAC+AGG | 0.378270 | 5.2:+69546117 | None:intergenic |
| AGAAAAGTGGCAGAGAGAAA+TGG | 0.381993 | 5.2:-69545415 | MS.gene29568:CDS |
| CATCTGGTGCCACAATTCCT+TGG | 0.414903 | 5.2:+69544601 | None:intergenic |
| CTGATTTCTCTTGCGAAAAG+AGG | 0.416366 | 5.2:+69544566 | None:intergenic |
| CTCAAGTGCAACATGCTCAT+TGG | 0.420115 | 5.2:+69544076 | None:intergenic |
| GGACATTGTGAAGGACTTCA+TGG | 0.423504 | 5.2:-69543955 | MS.gene29568:CDS |
| CATAAATTGCGGCTTCTAAA+CGG | 0.424426 | 5.2:+69544045 | None:intergenic |
| CCCTTTGAAGGACTAATTAG+TGG | 0.432878 | 5.2:+69543259 | None:intergenic |
| GTGAAGGACTTCATGGTTGA+TGG | 0.439958 | 5.2:-69543948 | MS.gene29568:CDS |
| TAGAAGCCGCAATTTATGTA+TGG | 0.441628 | 5.2:-69544040 | MS.gene29568:CDS |
| TTTAGATAGTTGCACTGCTA+TGG | 0.442885 | 5.2:-69544640 | MS.gene29568:CDS |
| TCAGAATGGAAGAACGTGCT+TGG | 0.444622 | 5.2:-69544171 | MS.gene29568:intron |
| GGAGTTACCTCTCCCTTTGA+AGG | 0.445840 | 5.2:+69543247 | None:intergenic |
| CAGGAGGCACACGGGGTACT+GGG | 0.446468 | 5.2:+69544520 | None:intergenic |
| TCAGGATATGTTTGCCAAGA+AGG | 0.453625 | 5.2:+69545351 | None:intergenic |
| CAGAATGGAAGAACGTGCTT+GGG | 0.465023 | 5.2:-69544170 | MS.gene29568:CDS |
| GAGGCTGATCCATCTGCATC+TGG | 0.467719 | 5.2:+69544585 | None:intergenic |
| AGCATGAAACCTTGTTGCAT+TGG | 0.469347 | 5.2:+69543823 | None:intergenic |
| GCAAGCACTCTTGAGAGAAC+TGG | 0.473659 | 5.2:+69544117 | None:intergenic |
| TCATTGAAGCAGCGCTTCCC+GGG | 0.475313 | 5.2:-69543879 | MS.gene29568:CDS |
| CTGCTTGGTGAAGATATGTC+AGG | 0.475560 | 5.2:-69545880 | MS.gene29568:CDS |
| ATCAGGAGGGGATATGATGA+AGG | 0.476878 | 5.2:-69545920 | MS.gene29568:intron |
| CAGCATTGCTTTAGATGACA+TGG | 0.484744 | 5.2:-69544412 | MS.gene29568:CDS |
| TTCTTCATTTCCTATTAGGA+AGG | 0.485913 | 5.2:-69546184 | MS.gene29568:CDS |
| AATGGGTCTTGTAGTTCCAC+TGG | 0.490578 | 5.2:-69546255 | MS.gene29568:CDS |
| GTTCGACTACAAAGTCATCC+TGG | 0.490964 | 5.2:-69543977 | MS.gene29568:CDS |
| GGTGAAGATATGTCAGGGTC+TGG | 0.491025 | 5.2:-69545874 | MS.gene29568:CDS |
| GTACCCCGTGTGCCTCCTGC+CGG | 0.499229 | 5.2:-69544516 | MS.gene29568:CDS |
| CTGCTTTCATCTCTCCTCCA+AGG | 0.501298 | 5.2:+69543146 | None:intergenic |
| TAGATTTCCATTGGCACCAA+TGG | 0.506196 | 5.2:-69543383 | MS.gene29568:CDS |
| TGATATTGTTGTTATTGTTG+TGG | 0.506831 | 5.2:+69543218 | None:intergenic |
| GTATTTGGATACCCTTCCTA+AGG | 0.508742 | 5.2:-69544376 | MS.gene29568:intron |
| ATGTTAACCATTGGTGCCAA+TGG | 0.513125 | 5.2:+69543376 | None:intergenic |
| GATATGTCAGGGTCTGGAAA+AGG | 0.513629 | 5.2:-69545868 | MS.gene29568:CDS |
| ACATTCAGATAGATTTCCAT+TGG | 0.519216 | 5.2:-69543392 | MS.gene29568:CDS |
| ACCTCTAGCTTACTACCATC+AGG | 0.519299 | 5.2:+69545333 | None:intergenic |
| TCTTGAGTTCTCACTGAGAC+CGG | 0.521027 | 5.2:+69544497 | None:intergenic |
| ATGTAGTTTGACTTAAACCC+GGG | 0.524605 | 5.2:+69543862 | None:intergenic |
| TGGAAAATCAAACCTTAGGA+AGG | 0.525020 | 5.2:+69544364 | None:intergenic |
| CTGTCGAGTTTACGTAGAGC+TGG | 0.529516 | 5.2:+69544770 | None:intergenic |
| ACACCAAAACCGCGACGTTG+AGG | 0.531446 | 5.2:+69543190 | None:intergenic |
| GAGTTCTCACTGAGACCGGC+AGG | 0.534877 | 5.2:+69544501 | None:intergenic |
| ATCAGCGGCAAGAGGAGAAG+TGG | 0.535708 | 5.2:-69544548 | MS.gene29568:CDS |
| GTGTTGTCAAATTACCTTGG+AGG | 0.537277 | 5.2:-69543160 | MS.gene29568:CDS |
| GCCACTAATTAGTCCTTCAA+AGG | 0.542594 | 5.2:-69543260 | MS.gene29568:CDS |
| ATGGATTGGCTTCTTTGTGT+TGG | 0.544302 | 5.2:-69545396 | MS.gene29568:CDS |
| AGAGTGTTGTCAAATTACCT+TGG | 0.555330 | 5.2:-69543163 | MS.gene29568:CDS |
| TCTTCATTTCCTATTAGGAA+GGG | 0.555428 | 5.2:-69546183 | MS.gene29568:CDS |
| ACTTTGTAGTCGAACGGCTA+GGG | 0.555981 | 5.2:+69543985 | None:intergenic |
| CCACTAATTAGTCCTTCAAA+GGG | 0.557284 | 5.2:-69543259 | MS.gene29568:CDS |
| AATTAGTCCTTCAAAGGGAG+AGG | 0.557362 | 5.2:-69543254 | MS.gene29568:CDS |
| GTGGTTTAGAGTGAGATCTC+TGG | 0.563305 | 5.2:+69544015 | None:intergenic |
| GAAGTCCTTCACAATGTCCC+AGG | 0.565686 | 5.2:+69543959 | None:intergenic |
| GACTTTGTAGTCGAACGGCT+AGG | 0.567248 | 5.2:+69543984 | None:intergenic |
| AAAAGGAGTTAGCACTGCAT+TGG | 0.568507 | 5.2:-69545851 | MS.gene29568:CDS |
| AGTGGCAGAGAGAAATGGAT+TGG | 0.572062 | 5.2:-69545410 | MS.gene29568:CDS |
| GGGTTTAAGTCAAACTACAT+TGG | 0.572158 | 5.2:-69543859 | MS.gene29568:CDS |
| GAAGGACTAATTAGTGGCAC+AGG | 0.574721 | 5.2:+69543265 | None:intergenic |
| TGAGACCGGCAGGAGGCACA+CGG | 0.577679 | 5.2:+69544511 | None:intergenic |
| CATGTGAAAAGAAAGAAAAG+TGG | 0.581474 | 5.2:-69545428 | MS.gene29568:CDS |
| AGGTTTGCGAAGTTACTGCT+TGG | 0.585242 | 5.2:-69545895 | MS.gene29568:CDS |
| TTCGACTACAAAGTCATCCT+GGG | 0.585548 | 5.2:-69543976 | MS.gene29568:CDS |
| TGTGAAACCATGTTAACCAT+TGG | 0.593683 | 5.2:+69543367 | None:intergenic |
| ATTGGCACCAATGGTTAACA+TGG | 0.597219 | 5.2:-69543374 | MS.gene29568:CDS |
| GAGACCGGCAGGAGGCACAC+GGG | 0.597490 | 5.2:+69544512 | None:intergenic |
| CAAGAGAAATCAGCGGCAAG+AGG | 0.598859 | 5.2:-69544556 | MS.gene29568:CDS |
| AATGCTATTACTAATTTGTG+TGG | 0.601531 | 5.2:-69545820 | MS.gene29568:intron |
| GTATGTTGACCAAGGAATTG+TGG | 0.604214 | 5.2:-69544610 | MS.gene29568:CDS |
| GAGGGGATATGATGAAGGAA+AGG | 0.608465 | 5.2:-69545915 | MS.gene29568:CDS |
| AGTGGCACAGGTGAATAACT+AGG | 0.609813 | 5.2:+69543277 | None:intergenic |
| AATGTAGTTTGACTTAAACC+CGG | 0.610470 | 5.2:+69543861 | None:intergenic |
| GTCATCCTGGGACATTGTGA+AGG | 0.614434 | 5.2:-69543964 | MS.gene29568:CDS |
| TGCTTGGTGAAGATATGTCA+GGG | 0.618748 | 5.2:-69545879 | MS.gene29568:CDS |
| AGCAATGCTGTTGATAGACA+TGG | 0.626027 | 5.2:+69544425 | None:intergenic |
| CTGGCGCCATACATAAATTG+CGG | 0.627878 | 5.2:+69544034 | None:intergenic |
| TCCTGATGGTAGTAAGCTAG+AGG | 0.628089 | 5.2:-69545334 | MS.gene29568:intron |
| TCTTGGCAAACATATCCTGA+TGG | 0.629177 | 5.2:-69545348 | MS.gene29568:CDS |
| AGGATGACTTTGTAGTCGAA+CGG | 0.629366 | 5.2:+69543979 | None:intergenic |
| AAGGGTATCCAAATACGACT+CGG | 0.630421 | 5.2:+69544383 | None:intergenic |
| GGAAAATCAAACCTTAGGAA+GGG | 0.632917 | 5.2:+69544365 | None:intergenic |
| ATCTGAGCAACACGATCCAG+TGG | 0.638385 | 5.2:+69546239 | None:intergenic |
| AGGGTATCCAAATACGACTC+GGG | 0.638687 | 5.2:+69544384 | None:intergenic |
| ATCATTAAACCTCAACGTCG+CGG | 0.638867 | 5.2:-69543199 | MS.gene29568:CDS |
| AGACCGGCAGGAGGCACACG+GGG | 0.642385 | 5.2:+69544513 | None:intergenic |
| GTCGAACGGCTAGGGTAGAG+TGG | 0.643760 | 5.2:+69543993 | None:intergenic |
| ATTGTGGCACCAGATGCAGA+TGG | 0.645033 | 5.2:-69544594 | MS.gene29568:CDS |
| AGCGGCAAGAGGAGAAGTGG+TGG | 0.645482 | 5.2:-69544545 | MS.gene29568:CDS |
| TAGCAAGATCCAATGCAACA+AGG | 0.662550 | 5.2:-69543832 | MS.gene29568:intron |
| TTCTCACTGAGACCGGCAGG+AGG | 0.665518 | 5.2:+69544504 | None:intergenic |
| GCACTCTTGAGAGAACTGGT+CGG | 0.681945 | 5.2:+69544121 | None:intergenic |
| GAACGGCTAGGGTAGAGTGG+TGG | 0.690009 | 5.2:+69543996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGATAAACAATTTAATT+AGG | + | chr5.2:69545763-69545782 | None:intergenic | 10.0% |
| !! | ACATTAAATTCACATATATA+AGG | + | chr5.2:69544043-69544062 | None:intergenic | 15.0% |
| !! | TTCAACAAAGATTAATAAAT+AGG | - | chr5.2:69544067-69544086 | MS.gene29568:CDS | 15.0% |
| !!! | AATTTTCAAAAGAGAAAAAA+TGG | - | chr5.2:69543057-69543076 | MS.gene29568:CDS | 15.0% |
| !!! | ATTTTCAAAAGAGAAAAAAT+GGG | - | chr5.2:69543058-69543077 | MS.gene29568:CDS | 15.0% |
| !!! | TAAAGATAGAAGTATTTTAT+TGG | + | chr5.2:69543710-69543729 | None:intergenic | 15.0% |
| !! | ATTGTTGATACTATATAATC+TGG | - | chr5.2:69545057-69545076 | MS.gene29568:intron | 20.0% |
| !! | TACAAAGTCAAAACATAATA+AGG | + | chr5.2:69543388-69543407 | None:intergenic | 20.0% |
| !!! | AAAAAGTTAACATTTTCTCT+AGG | + | chr5.2:69543773-69543792 | None:intergenic | 20.0% |
| !!! | AAAAGTTAACATTTTCTCTA+GGG | + | chr5.2:69543772-69543791 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTCCAATGT+AGG | - | chr5.2:69544604-69544623 | MS.gene29568:CDS | 20.0% |
| !!! | TGTTTCATTTTAAACATTTC+AGG | - | chr5.2:69545809-69545828 | MS.gene29568:intron | 20.0% |
| !!! | TTATTATGTTTTGACTTTGT+AGG | - | chr5.2:69543387-69543406 | MS.gene29568:CDS | 20.0% |
| !!! | TTCTTACAATTTGTTCAATT+GGG | - | chr5.2:69543822-69543841 | MS.gene29568:intron | 20.0% |
| !!! | TTTCTTACAATTTGTTCAAT+TGG | - | chr5.2:69543821-69543840 | MS.gene29568:intron | 20.0% |
| ! | AAATAAGCTGAAATGGTTTA+TGG | + | chr5.2:69545641-69545660 | None:intergenic | 25.0% |
| ! | AACAAGCAAAAATAGCAAAA+GGG | - | chr5.2:69543121-69543140 | MS.gene29568:CDS | 25.0% |
| ! | ACAAGTTAAGGAACTATAAA+AGG | - | chr5.2:69543616-69543635 | MS.gene29568:intron | 25.0% |
| ! | AGCAAAACTAATTTCACATT+AGG | + | chr5.2:69545703-69545722 | None:intergenic | 25.0% |
| ! | CTAAAATTTCCTGTTACATA+GGG | + | chr5.2:69544675-69544694 | None:intergenic | 25.0% |
| ! | CTTATGAAAATAAGCTGAAA+TGG | + | chr5.2:69545648-69545667 | None:intergenic | 25.0% |
| ! | TTAAGCTGTATTAGAGAAAA+GGG | - | chr5.2:69543568-69543587 | MS.gene29568:intron | 25.0% |
| ! | TTATGTTCTGTTTAGTGTTT+AGG | - | chr5.2:69543291-69543310 | MS.gene29568:CDS | 25.0% |
| ! | TTCGTTTGATTGAAATAGAA+CGG | - | chr5.2:69544152-69544171 | MS.gene29568:CDS | 25.0% |
| ! | TTGATAAAAATGTCTGATCT+TGG | + | chr5.2:69544536-69544555 | None:intergenic | 25.0% |
| ! | TTTAAGCTGTATTAGAGAAA+AGG | - | chr5.2:69543567-69543586 | MS.gene29568:intron | 25.0% |
| !! | AATGCTATTACTAATTTGTG+TGG | - | chr5.2:69543510-69543529 | MS.gene29568:intron | 25.0% |
| !! | TATTACTAATTTGTGTGGTA+TGG | - | chr5.2:69543515-69543534 | MS.gene29568:intron | 25.0% |
| !! | TCTAAAATTTCCTGTTACAT+AGG | + | chr5.2:69544676-69544695 | None:intergenic | 25.0% |
| !! | TGATATTGTTGTTATTGTTG+TGG | + | chr5.2:69546115-69546134 | None:intergenic | 25.0% |
| !! | TTGTTATTGTTGTGGATAAA+AGG | + | chr5.2:69546107-69546126 | None:intergenic | 25.0% |
| !! | TTTTAAACATTTCAGGATGT+TGG | - | chr5.2:69545816-69545835 | MS.gene29568:intron | 25.0% |
| !!! | AGCTGTTTTTGTAAGTTATT+TGG | + | chr5.2:69545676-69545695 | None:intergenic | 25.0% |
| !!! | CAAATTTCGAGTTTTCAATT+TGG | + | chr5.2:69544365-69544384 | None:intergenic | 25.0% |
| !!! | GCTGTTTTTGTAAGTTATTT+GGG | + | chr5.2:69545675-69545694 | None:intergenic | 25.0% |
| !!! | GTTAACTTTTTCTTGTGTTA+TGG | - | chr5.2:69543782-69543801 | MS.gene29568:intron | 25.0% |
| AAAGTTCAAACAACGTATCA+TGG | + | chr5.2:69545140-69545159 | None:intergenic | 30.0% | |
| AACGGTCTATATTTCATGTT+TGG | - | chr5.2:69544170-69544189 | MS.gene29568:CDS | 30.0% | |
| AAGTTCAAACAACGTATCAT+GGG | + | chr5.2:69545139-69545158 | None:intergenic | 30.0% | |
| AATCATACAAAGTAGAGAGT+AGG | + | chr5.2:69544094-69544113 | None:intergenic | 30.0% | |
| ACACTAAACAGAACATAACA+AGG | + | chr5.2:69543289-69543308 | None:intergenic | 30.0% | |
| ACATTCAGATAGATTTCCAT+TGG | - | chr5.2:69545938-69545957 | MS.gene29568:intron | 30.0% | |
| ACTCAACACAAAGCAAAATT+TGG | - | chr5.2:69546026-69546045 | MS.gene29568:intron | 30.0% | |
| ACTCTCTACTTTGTATGATT+AGG | - | chr5.2:69544094-69544113 | MS.gene29568:CDS | 30.0% | |
| AGTATCAGCTCAAAAATTTC+TGG | - | chr5.2:69543246-69543265 | MS.gene29568:CDS | 30.0% | |
| ATCATACAAAGTAGAGAGTA+GGG | + | chr5.2:69544093-69544112 | None:intergenic | 30.0% | |
| ATGTTAATATGAAGCTGGTA+GGG | + | chr5.2:69545790-69545809 | None:intergenic | 30.0% | |
| ATTGTATCATCAACAGATCT+TGG | - | chr5.2:69545586-69545605 | MS.gene29568:intron | 30.0% | |
| CATGTGAAAAGAAAGAAAAG+TGG | - | chr5.2:69543902-69543921 | MS.gene29568:CDS | 30.0% | |
| CTCTCTACTTTGTATGATTA+GGG | - | chr5.2:69544095-69544114 | MS.gene29568:CDS | 30.0% | |
| CTGAACAGCTAAATAGAAAT+TGG | - | chr5.2:69544318-69544337 | MS.gene29568:intron | 30.0% | |
| GAAACATGTTAATATGAAGC+TGG | + | chr5.2:69545795-69545814 | None:intergenic | 30.0% | |
| GAACAAGCAAAAATAGCAAA+AGG | - | chr5.2:69543120-69543139 | MS.gene29568:CDS | 30.0% | |
| GAACTGTATTTGGACAATTA+TGG | - | chr5.2:69543863-69543882 | MS.gene29568:CDS | 30.0% | |
| TAACATGGTTTCACAGAAAA+AGG | - | chr5.2:69545971-69545990 | MS.gene29568:intron | 30.0% | |
| TATGTGGAAAATCAAACCTT+AGG | + | chr5.2:69544973-69544992 | None:intergenic | 30.0% | |
| TCTTCATTTCCTATTAGGAA+GGG | - | chr5.2:69543147-69543166 | MS.gene29568:CDS | 30.0% | |
| TGATACATGATAGAACGTTA+TGG | - | chr5.2:69545089-69545108 | MS.gene29568:intron | 30.0% | |
| TGGAAATCTATCTGAATGTT+TGG | + | chr5.2:69545937-69545956 | None:intergenic | 30.0% | |
| TTATCATCAACTTGAGAAAC+AGG | + | chr5.2:69543216-69543235 | None:intergenic | 30.0% | |
| TTCTTCATTTCCTATTAGGA+AGG | - | chr5.2:69543146-69543165 | MS.gene29568:CDS | 30.0% | |
| TTGATCAAAATCAGATGACT+CGG | - | chr5.2:69544220-69544239 | MS.gene29568:intron | 30.0% | |
| ! | AAGATCTCAATCGATTTATG+TGG | + | chr5.2:69544989-69545008 | None:intergenic | 30.0% |
| ! | AATGTAGTTTGACTTAAACC+CGG | + | chr5.2:69545472-69545491 | None:intergenic | 30.0% |
| ! | AGAAAGCTATTCAAGAGTTT+TGG | - | chr5.2:69545851-69545870 | MS.gene29568:CDS | 30.0% |
| ! | CACTTTTCTTTCTTTTCACA+TGG | + | chr5.2:69543904-69543923 | None:intergenic | 30.0% |
| ! | TCTTGAATAGCTTTCTAGTA+TGG | + | chr5.2:69545847-69545866 | None:intergenic | 30.0% |
| !! | AGAAATTTTTGAGCTGATAC+TGG | + | chr5.2:69543247-69543266 | None:intergenic | 30.0% |
| !! | TTGTAACACATGTTGATAGT+AGG | - | chr5.2:69543544-69543563 | MS.gene29568:intron | 30.0% |
| !!! | CTTTTTAACTTGTGCCTTAA+GGG | - | chr5.2:69543731-69543750 | MS.gene29568:intron | 30.0% |
| !!! | TCATTTTGACTTGCTTTTCA+TGG | + | chr5.2:69546303-69546322 | None:intergenic | 30.0% |
| ACCAATGAAAATTTGACAGC+AGG | + | chr5.2:69544274-69544293 | None:intergenic | 35.0% | |
| AGGTAGTAGTAGTACTAGTA+AGG | + | chr5.2:69544419-69544438 | None:intergenic | 35.0% | |
| ATTTAGCTGTTCAGATAGAC+TGG | + | chr5.2:69544312-69544331 | None:intergenic | 35.0% | |
| CAACATGTAGGAACTGTATT+TGG | - | chr5.2:69543853-69543872 | MS.gene29568:CDS | 35.0% | |
| CATAAATTGCGGCTTCTAAA+CGG | + | chr5.2:69545288-69545307 | None:intergenic | 35.0% | |
| CATGTTAATATGAAGCTGGT+AGG | + | chr5.2:69545791-69545810 | None:intergenic | 35.0% | |
| CCACTAATTAGTCCTTCAAA+GGG | - | chr5.2:69546071-69546090 | MS.gene29568:intron | 35.0% | |
| CCCTACTAAATATATGCACA+CGG | + | chr5.2:69544457-69544476 | None:intergenic | 35.0% | |
| CCGTGTGCATATATTTAGTA+GGG | - | chr5.2:69544454-69544473 | MS.gene29568:CDS | 35.0% | |
| CGTTGTTTGAACTTTCAGAA+TGG | - | chr5.2:69545145-69545164 | MS.gene29568:intron | 35.0% | |
| GGAAAATCAAACCTTAGGAA+GGG | + | chr5.2:69544968-69544987 | None:intergenic | 35.0% | |
| GGGTTTAAGTCAAACTACAT+TGG | - | chr5.2:69545471-69545490 | MS.gene29568:intron | 35.0% | |
| GGTAGTAGTAGTACTAGTAA+GGG | + | chr5.2:69544418-69544437 | None:intergenic | 35.0% | |
| GGTCTTCTTCATTTCCTATT+AGG | - | chr5.2:69543142-69543161 | MS.gene29568:CDS | 35.0% | |
| TAAATTGAGTCCCTGGTTAT+AGG | + | chr5.2:69544251-69544270 | None:intergenic | 35.0% | |
| TACACAATTGCAGCAAAGTA+TGG | + | chr5.2:69543327-69543346 | None:intergenic | 35.0% | |
| TAGAAGCCGCAATTTATGTA+TGG | - | chr5.2:69545290-69545309 | MS.gene29568:intron | 35.0% | |
| TCCGTGTGCATATATTTAGT+AGG | - | chr5.2:69544453-69544472 | MS.gene29568:CDS | 35.0% | |
| TGGAAAATCAAACCTTAGGA+AGG | + | chr5.2:69544969-69544988 | None:intergenic | 35.0% | |
| TGTGAAACCATGTTAACCAT+TGG | + | chr5.2:69545966-69545985 | None:intergenic | 35.0% | |
| TTGTTGAGTTAATGCCTTCT+TGG | - | chr5.2:69543965-69543984 | MS.gene29568:CDS | 35.0% | |
| TTTAGATAGTTGCACTGCTA+TGG | - | chr5.2:69544690-69544709 | MS.gene29568:intron | 35.0% | |
| ! | ACCTGCTGTCAAATTTTCAT+TGG | - | chr5.2:69544270-69544289 | MS.gene29568:intron | 35.0% |
| ! | ATGTAGTTTGACTTAAACCC+GGG | + | chr5.2:69545471-69545490 | None:intergenic | 35.0% |
| ! | TACACTTTTCCCTATGTAAC+AGG | - | chr5.2:69544663-69544682 | MS.gene29568:intron | 35.0% |
| ! | TCTTTCTTTTCACATGGTAC+AGG | + | chr5.2:69543898-69543917 | None:intergenic | 35.0% |
| ! | TGTTCTGTTCTTTTGCAACT+TGG | + | chr5.2:69546254-69546273 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr5.2:69543748-69543767 | None:intergenic | 35.0% |
| !! | AGAGTGTTGTCAAATTACCT+TGG | - | chr5.2:69546167-69546186 | MS.gene29568:CDS | 35.0% |
| !! | TTCATCTGATTTGCTGCATT+TGG | + | chr5.2:69543181-69543200 | None:intergenic | 35.0% |
| !!! | GCTTTTTAACTTGTGCCTTA+AGG | - | chr5.2:69543730-69543749 | MS.gene29568:intron | 35.0% |
| !!! | TGTTTTGACTTTGTAGGATC+AGG | - | chr5.2:69543393-69543412 | MS.gene29568:CDS | 35.0% |
| AAAAGGAGTTAGCACTGCAT+TGG | - | chr5.2:69543479-69543498 | MS.gene29568:CDS | 40.0% | |
| AATTAGTCCTTCAAAGGGAG+AGG | - | chr5.2:69546076-69546095 | MS.gene29568:intron | 40.0% | |
| AGAAAAGTGGCAGAGAGAAA+TGG | - | chr5.2:69543915-69543934 | MS.gene29568:CDS | 40.0% | |
| AGCATGAAACCTTGTTGCAT+TGG | + | chr5.2:69545510-69545529 | None:intergenic | 40.0% | |
| AGGATGACTTTGTAGTCGAA+CGG | + | chr5.2:69545354-69545373 | None:intergenic | 40.0% | |
| ATCATTAAACCTCAACGTCG+CGG | - | chr5.2:69546131-69546150 | MS.gene29568:CDS | 40.0% | |
| ATTGGCACCAATGGTTAACA+TGG | - | chr5.2:69545956-69545975 | MS.gene29568:intron | 40.0% | |
| CATGTTAACTTATGCCCTCA+GGG | - | chr5.2:69543592-69543611 | MS.gene29568:intron | 40.0% | |
| CTACTACTACCTTTGACTGT+AGG | - | chr5.2:69544427-69544446 | MS.gene29568:CDS | 40.0% | |
| CTGATTTCTCTTGCGAAAAG+AGG | + | chr5.2:69544767-69544786 | None:intergenic | 40.0% | |
| GCCACTAATTAGTCCTTCAA+AGG | - | chr5.2:69546070-69546089 | MS.gene29568:intron | 40.0% | |
| GTAGTACTAGTAAGGGATCT+CGG | + | chr5.2:69544411-69544430 | None:intergenic | 40.0% | |
| GTATGTTGACCAAGGAATTG+TGG | - | chr5.2:69544720-69544739 | MS.gene29568:intron | 40.0% | |
| GTATTTGGATACCCTTCCTA+AGG | - | chr5.2:69544954-69544973 | MS.gene29568:intron | 40.0% | |
| GTGTTGTCAAATTACCTTGG+AGG | - | chr5.2:69546170-69546189 | MS.gene29568:CDS | 40.0% | |
| TAGATTTCCATTGGCACCAA+TGG | - | chr5.2:69545947-69545966 | MS.gene29568:intron | 40.0% | |
| TAGCAAGATCCAATGCAACA+AGG | - | chr5.2:69545498-69545517 | MS.gene29568:intron | 40.0% | |
| TCAGGATATGTTTGCCAAGA+AGG | + | chr5.2:69543982-69544001 | None:intergenic | 40.0% | |
| TCATGTTAACTTATGCCCTC+AGG | - | chr5.2:69543591-69543610 | MS.gene29568:intron | 40.0% | |
| TCTAACATGTTCTGTTCTGC+AGG | - | chr5.2:69544496-69544515 | MS.gene29568:CDS | 40.0% | |
| TCTTGGCAAACATATCCTGA+TGG | - | chr5.2:69543982-69544001 | MS.gene29568:CDS | 40.0% | |
| TTCGACTACAAAGTCATCCT+GGG | - | chr5.2:69545354-69545373 | MS.gene29568:CDS | 40.0% | |
| TTGACTTTGTAGGATCAGGA+GGG | - | chr5.2:69543397-69543416 | MS.gene29568:CDS | 40.0% | |
| ! | ACATGGCTGCTTTCAGTATT+TGG | + | chr5.2:69544891-69544910 | None:intergenic | 40.0% |
| ! | ACTCGGATTTTCCTATAACC+AGG | - | chr5.2:69544237-69544256 | MS.gene29568:intron | 40.0% |
| ! | AGCAATGCTGTTGATAGACA+TGG | + | chr5.2:69544908-69544927 | None:intergenic | 40.0% |
| ! | CAGCATTGCTTTAGATGACA+TGG | - | chr5.2:69544918-69544937 | MS.gene29568:intron | 40.0% |
| ! | CCCTTTGAAGGACTAATTAG+TGG | + | chr5.2:69546074-69546093 | None:intergenic | 40.0% |
| ! | CTCGGATTTTCCTATAACCA+GGG | - | chr5.2:69544238-69544257 | MS.gene29568:intron | 40.0% |
| ! | CTTTTCGCAAGAGAAATCAG+CGG | - | chr5.2:69544767-69544786 | MS.gene29568:CDS | 40.0% |
| ! | TACCAAGAACTAGCCTACAT+TGG | + | chr5.2:69544620-69544639 | None:intergenic | 40.0% |
| ! | TGCTTGGTGAAGATATGTCA+GGG | - | chr5.2:69543451-69543470 | MS.gene29568:CDS | 40.0% |
| ! | TTCCAATGTAGGCTAGTTCT+TGG | - | chr5.2:69544615-69544634 | MS.gene29568:CDS | 40.0% |
| ! | TTTGACTTTGTAGGATCAGG+AGG | - | chr5.2:69543396-69543415 | MS.gene29568:CDS | 40.0% |
| !! | AAGGGTATCCAAATACGACT+CGG | + | chr5.2:69544950-69544969 | None:intergenic | 40.0% |
| !! | ATGGATTGGCTTCTTTGTGT+TGG | - | chr5.2:69543934-69543953 | MS.gene29568:CDS | 40.0% |
| !! | ATGTTAACCATTGGTGCCAA+TGG | + | chr5.2:69545957-69545976 | None:intergenic | 40.0% |
| !! | GAGTTTTGGTATGTTGACCA+AGG | - | chr5.2:69544712-69544731 | MS.gene29568:intron | 40.0% |
| !! | TGGGATTTGTTGCAACATGT+AGG | - | chr5.2:69543841-69543860 | MS.gene29568:CDS | 40.0% |
| !!! | TTCAAGAGTTTTGGAGAGCA+TGG | - | chr5.2:69545860-69545879 | MS.gene29568:CDS | 40.0% |
| ACTTTGTAGTCGAACGGCTA+GGG | + | chr5.2:69545348-69545367 | None:intergenic | 45.0% | |
| AGGTTTGCGAAGTTACTGCT+TGG | - | chr5.2:69543435-69543454 | MS.gene29568:CDS | 45.0% | |
| AGTGGCACAGGTGAATAACT+AGG | + | chr5.2:69546056-69546075 | None:intergenic | 45.0% | |
| AGTGGCAGAGAGAAATGGAT+TGG | - | chr5.2:69543920-69543939 | MS.gene29568:CDS | 45.0% | |
| ATCAGGAGGGGATATGATGA+AGG | - | chr5.2:69543410-69543429 | MS.gene29568:CDS | 45.0% | |
| CAGAATGGAAGAACGTGCTT+GGG | - | chr5.2:69545160-69545179 | MS.gene29568:intron | 45.0% | |
| CGAAATGACTTCCAATGCGT+TGG | + | chr5.2:69544136-69544155 | None:intergenic | 45.0% | |
| CTCAAGTGCAACATGCTCAT+TGG | + | chr5.2:69545257-69545276 | None:intergenic | 45.0% | |
| CTGGCGCCATACATAAATTG+CGG | + | chr5.2:69545299-69545318 | None:intergenic | 45.0% | |
| GAAGGACTAATTAGTGGCAC+AGG | + | chr5.2:69546068-69546087 | None:intergenic | 45.0% | |
| GACATAGTGCCCTTCCTAAT+AGG | + | chr5.2:69543159-69543178 | None:intergenic | 45.0% | |
| GAGGGGATATGATGAAGGAA+AGG | - | chr5.2:69543415-69543434 | MS.gene29568:CDS | 45.0% | |
| GATATGTCAGGGTCTGGAAA+AGG | - | chr5.2:69543462-69543481 | MS.gene29568:CDS | 45.0% | |
| GGACATTGTGAAGGACTTCA+TGG | - | chr5.2:69545375-69545394 | MS.gene29568:CDS | 45.0% | |
| GTGAAGGACTTCATGGTTGA+TGG | - | chr5.2:69545382-69545401 | MS.gene29568:CDS | 45.0% | |
| GTTCGACTACAAAGTCATCC+TGG | - | chr5.2:69545353-69545372 | MS.gene29568:CDS | 45.0% | |
| TCAGAATGGAAGAACGTGCT+TGG | - | chr5.2:69545159-69545178 | MS.gene29568:intron | 45.0% | |
| TCCTGATGGTAGTAAGCTAG+AGG | - | chr5.2:69543996-69544015 | MS.gene29568:CDS | 45.0% | |
| TCTTGAGTTCTCACTGAGAC+CGG | + | chr5.2:69544836-69544855 | None:intergenic | 45.0% | |
| TGACTTTGTAGGATCAGGAG+GGG | - | chr5.2:69543398-69543417 | MS.gene29568:CDS | 45.0% | |
| TTGTAGTCATGCCAACGCAT+TGG | - | chr5.2:69544122-69544141 | MS.gene29568:CDS | 45.0% | |
| ! | AATGGGTCTTGTAGTTCCAC+TGG | - | chr5.2:69543075-69543094 | MS.gene29568:CDS | 45.0% |
| ! | ACCTCTAGCTTACTACCATC+AGG | + | chr5.2:69544000-69544019 | None:intergenic | 45.0% |
| ! | AGGGTATCCAAATACGACTC+GGG | + | chr5.2:69544949-69544968 | None:intergenic | 45.0% |
| ! | CTGCTTGGTGAAGATATGTC+AGG | - | chr5.2:69543450-69543469 | MS.gene29568:CDS | 45.0% |
| ! | GTGGTTTAGAGTGAGATCTC+TGG | + | chr5.2:69545318-69545337 | None:intergenic | 45.0% |
| ! | GTTGCACTGCTATGGAGTTT+TGG | - | chr5.2:69544698-69544717 | MS.gene29568:intron | 45.0% |
| !! | TTCCTTAACTTGTGCCCTGA+GGG | + | chr5.2:69543609-69543628 | None:intergenic | 45.0% |
| ATCTGAGCAACACGATCCAG+TGG | + | chr5.2:69543094-69543113 | None:intergenic | 50.0% | |
| ATTGTGGCACCAGATGCAGA+TGG | - | chr5.2:69544736-69544755 | MS.gene29568:intron | 50.0% | |
| CAAGAGAAATCAGCGGCAAG+AGG | - | chr5.2:69544774-69544793 | MS.gene29568:CDS | 50.0% | |
| CAGCAGGTAAATTGAGTCCC+TGG | + | chr5.2:69544258-69544277 | None:intergenic | 50.0% | |
| CTGCTTTCATCTCTCCTCCA+AGG | + | chr5.2:69546187-69546206 | None:intergenic | 50.0% | |
| CTGTCGAGTTTACGTAGAGC+TGG | + | chr5.2:69544563-69544582 | None:intergenic | 50.0% | |
| GAAGTCCTTCACAATGTCCC+AGG | + | chr5.2:69545374-69545393 | None:intergenic | 50.0% | |
| GACTTTGTAGTCGAACGGCT+AGG | + | chr5.2:69545349-69545368 | None:intergenic | 50.0% | |
| GCAAGCACTCTTGAGAGAAC+TGG | + | chr5.2:69545216-69545235 | None:intergenic | 50.0% | |
| GCACTCTTGAGAGAACTGGT+CGG | + | chr5.2:69545212-69545231 | None:intergenic | 50.0% | |
| GGAAGTTCCCGAGTCGTATT+TGG | - | chr5.2:69544939-69544958 | MS.gene29568:intron | 50.0% | |
| GGAGTTACCTCTCCCTTTGA+AGG | + | chr5.2:69546086-69546105 | None:intergenic | 50.0% | |
| GGTGAAGATATGTCAGGGTC+TGG | - | chr5.2:69543456-69543475 | MS.gene29568:CDS | 50.0% | |
| GTCATCCTGGGACATTGTGA+AGG | - | chr5.2:69545366-69545385 | MS.gene29568:CDS | 50.0% | |
| TTCATTGAAGCAGCGCTTCC+CGG | - | chr5.2:69545450-69545469 | MS.gene29568:CDS | 50.0% | |
| ! | AAACCTCAACGTCGCGGTTT+TGG | - | chr5.2:69546137-69546156 | MS.gene29568:CDS | 50.0% |
| ! | CACGGATTGCCTACAGTCAA+AGG | + | chr5.2:69544439-69544458 | None:intergenic | 50.0% |
| !! | CATCTGGTGCCACAATTCCT+TGG | + | chr5.2:69544732-69544751 | None:intergenic | 50.0% |
| !! | GTTCCTTAACTTGTGCCCTG+AGG | + | chr5.2:69543610-69543629 | None:intergenic | 50.0% |
| ACACCAAAACCGCGACGTTG+AGG | + | chr5.2:69546143-69546162 | None:intergenic | 55.0% | |
| ATCAGCGGCAAGAGGAGAAG+TGG | - | chr5.2:69544782-69544801 | MS.gene29568:CDS | 55.0% | |
| GAGGCTGATCCATCTGCATC+TGG | + | chr5.2:69544748-69544767 | None:intergenic | 55.0% | |
| TCATTGAAGCAGCGCTTCCC+GGG | - | chr5.2:69545451-69545470 | MS.gene29568:CDS | 55.0% | |
| TGCCCTCAGGGCACAAGTTA+AGG | - | chr5.2:69543604-69543623 | MS.gene29568:intron | 55.0% | |
| AGCGGCAAGAGGAGAAGTGG+TGG | - | chr5.2:69544785-69544804 | MS.gene29568:CDS | 60.0% | |
| GAACGGCTAGGGTAGAGTGG+TGG | + | chr5.2:69545337-69545356 | None:intergenic | 60.0% | |
| GAGTTCTCACTGAGACCGGC+AGG | + | chr5.2:69544832-69544851 | None:intergenic | 60.0% | |
| GTCGAACGGCTAGGGTAGAG+TGG | + | chr5.2:69545340-69545359 | None:intergenic | 60.0% | |
| TTCTCACTGAGACCGGCAGG+AGG | + | chr5.2:69544829-69544848 | None:intergenic | 60.0% | |
| ! | CAGGAGGCACACGGGGTACT+GGG | + | chr5.2:69544813-69544832 | None:intergenic | 65.0% |
| ! | TGAGACCGGCAGGAGGCACA+CGG | + | chr5.2:69544822-69544841 | None:intergenic | 65.0% |
| GTACCCCGTGTGCCTCCTGC+CGG | - | chr5.2:69544814-69544833 | MS.gene29568:CDS | 70.0% | |
| ! | AGACCGGCAGGAGGCACACG+GGG | + | chr5.2:69544820-69544839 | None:intergenic | 70.0% |
| ! | GAGACCGGCAGGAGGCACAC+GGG | + | chr5.2:69544821-69544840 | None:intergenic | 70.0% |
| ! | GCAGGAGGCACACGGGGTAC+TGG | + | chr5.2:69544814-69544833 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 69543030 | 69546322 | 69543030 | ID=MS.gene29568 |
| chr5.2 | mRNA | 69543030 | 69546322 | 69543030 | ID=MS.gene29568.t1;Parent=MS.gene29568 |
| chr5.2 | exon | 69546085 | 69546322 | 69546085 | ID=MS.gene29568.t1.exon1;Parent=MS.gene29568.t1 |
| chr5.2 | CDS | 69546085 | 69546322 | 69546085 | ID=cds.MS.gene29568.t1;Parent=MS.gene29568.t1 |
| chr5.2 | exon | 69545821 | 69545937 | 69545821 | ID=MS.gene29568.t1.exon2;Parent=MS.gene29568.t1 |
| chr5.2 | CDS | 69545821 | 69545937 | 69545821 | ID=cds.MS.gene29568.t1;Parent=MS.gene29568.t1 |
| chr5.2 | exon | 69545335 | 69545489 | 69545335 | ID=MS.gene29568.t1.exon3;Parent=MS.gene29568.t1 |
| chr5.2 | CDS | 69545335 | 69545489 | 69545335 | ID=cds.MS.gene29568.t1;Parent=MS.gene29568.t1 |
| chr5.2 | exon | 69544760 | 69544834 | 69544760 | ID=MS.gene29568.t1.exon4;Parent=MS.gene29568.t1 |
| chr5.2 | CDS | 69544760 | 69544834 | 69544760 | ID=cds.MS.gene29568.t1;Parent=MS.gene29568.t1 |
| chr5.2 | exon | 69544377 | 69544667 | 69544377 | ID=MS.gene29568.t1.exon5;Parent=MS.gene29568.t1 |
| chr5.2 | CDS | 69544377 | 69544667 | 69544377 | ID=cds.MS.gene29568.t1;Parent=MS.gene29568.t1 |
| chr5.2 | exon | 69543833 | 69544189 | 69543833 | ID=MS.gene29568.t1.exon6;Parent=MS.gene29568.t1 |
| chr5.2 | CDS | 69543833 | 69544189 | 69543833 | ID=cds.MS.gene29568.t1;Parent=MS.gene29568.t1 |
| chr5.2 | exon | 69543030 | 69543521 | 69543030 | ID=MS.gene29568.t1.exon7;Parent=MS.gene29568.t1 |
| chr5.2 | CDS | 69543030 | 69543521 | 69543030 | ID=cds.MS.gene29568.t1;Parent=MS.gene29568.t1 |
| Gene Sequence |
| Protein sequence |
