Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29731.t1 | XP_003616760.1 | 95.4 | 500 | 23 | 0 | 1 | 500 | 36 | 535 | 1.10E-258 | 902.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29731.t1 | Q5XVC7 | 40.0 | 515 | 231 | 14 | 2 | 500 | 64 | 516 | 1.4e-68 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29731.t1 | G7KH30 | 95.4 | 500 | 23 | 0 | 1 | 500 | 36 | 535 | 8.2e-259 | 902.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049302 | MS.gene29731 | 0.819998 | 8.65E-53 | -1.69E-46 |
| MS.gene049418 | MS.gene29731 | 0.838652 | 2.53E-57 | -1.69E-46 |
| MS.gene049698 | MS.gene29731 | 0.811329 | 7.39E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene29731 | 0.824981 | 6.01E-54 | -1.69E-46 |
| MS.gene050297 | MS.gene29731 | 0.817709 | 2.87E-52 | -1.69E-46 |
| MS.gene051067 | MS.gene29731 | 0.827601 | 1.43E-54 | -1.69E-46 |
| MS.gene051478 | MS.gene29731 | 0.802481 | 5.50E-49 | -1.69E-46 |
| MS.gene052143 | MS.gene29731 | 0.807702 | 4.44E-50 | -1.69E-46 |
| MS.gene053536 | MS.gene29731 | 0.824052 | 9.95E-54 | -1.69E-46 |
| MS.gene053538 | MS.gene29731 | 0.817483 | 3.22E-52 | -1.69E-46 |
| MS.gene055777 | MS.gene29731 | 0.871003 | 9.51E-67 | -1.69E-46 |
| MS.gene056041 | MS.gene29731 | 0.810827 | 9.50E-51 | -1.69E-46 |
| MS.gene056042 | MS.gene29731 | 0.81952 | 1.11E-52 | -1.69E-46 |
| MS.gene056704 | MS.gene29731 | 0.801574 | 8.45E-49 | -1.69E-46 |
| MS.gene056870 | MS.gene29731 | 0.828243 | 1.00E-54 | -1.69E-46 |
| MS.gene05709 | MS.gene29731 | 0.823223 | 1.55E-53 | -1.69E-46 |
| MS.gene058196 | MS.gene29731 | 0.803143 | 4.01E-49 | -1.69E-46 |
| MS.gene058197 | MS.gene29731 | 0.825152 | 5.48E-54 | -1.69E-46 |
| MS.gene058198 | MS.gene29731 | 0.821821 | 3.29E-53 | -1.69E-46 |
| MS.gene058823 | MS.gene29731 | 0.813416 | 2.59E-51 | -1.69E-46 |
| MS.gene059300 | MS.gene29731 | 0.837194 | 6.00E-57 | -1.69E-46 |
| MS.gene059424 | MS.gene29731 | 0.823855 | 1.11E-53 | -1.69E-46 |
| MS.gene06057 | MS.gene29731 | 0.855519 | 5.97E-62 | -1.69E-46 |
| MS.gene060825 | MS.gene29731 | 0.802642 | 5.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29731.t1 | MTR_5g083980 | 95.400 | 500 | 23 | 0 | 1 | 500 | 36 | 535 | 0.0 | 944 |
| MS.gene29731.t1 | MTR_3g072350 | 53.381 | 562 | 186 | 12 | 2 | 500 | 31 | 579 | 1.05e-163 | 476 |
| MS.gene29731.t1 | MTR_3g072350 | 51.983 | 479 | 163 | 9 | 2 | 417 | 31 | 505 | 7.36e-132 | 392 |
| MS.gene29731.t1 | MTR_7g072550 | 36.264 | 546 | 274 | 13 | 2 | 496 | 37 | 559 | 1.97e-80 | 261 |
| MS.gene29731.t1 | MTR_4g029090 | 37.259 | 518 | 285 | 11 | 2 | 489 | 30 | 537 | 8.53e-67 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29731.t1 | AT2G40480 | 40.347 | 518 | 225 | 16 | 2 | 500 | 64 | 516 | 3.87e-83 | 267 |
| MS.gene29731.t1 | AT3G56270 | 37.269 | 432 | 190 | 16 | 13 | 426 | 52 | 420 | 2.17e-46 | 167 |
| MS.gene29731.t1 | AT2G38370 | 31.395 | 516 | 287 | 11 | 2 | 492 | 31 | 504 | 2.72e-40 | 152 |
| MS.gene29731.t1 | AT2G38370 | 31.395 | 516 | 287 | 11 | 2 | 492 | 48 | 521 | 3.78e-40 | 152 |
| MS.gene29731.t1 | AT3G51720 | 37.367 | 281 | 104 | 9 | 2 | 279 | 18 | 229 | 1.95e-16 | 81.6 |
Find 70 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAGGTATTTGAAATT+CGG | 0.271157 | 5.3:-68083024 | None:intergenic |
| CTTCTTCTTCTGATGTGATA+TGG | 0.272323 | 5.3:-68083525 | None:intergenic |
| TTTGCTGCGTAGAACTTCTT+TGG | 0.279623 | 5.3:-68083138 | None:intergenic |
| AAAGAAGCTGTTACTCGTTT+TGG | 0.282290 | 5.3:+68080881 | MS.gene29731:CDS |
| TCTTCAGGTATTTGAAATTC+GGG | 0.319312 | 5.3:-68083023 | None:intergenic |
| ACTTGATGTGCTTGAAGAAC+TGG | 0.339651 | 5.3:+68082275 | MS.gene29731:CDS |
| TTCCTAAGGGGAATGATATT+CGG | 0.360853 | 5.3:-68083559 | None:intergenic |
| ACATATCGGGCGATGAAGTA+TGG | 0.361701 | 5.3:-68082458 | None:intergenic |
| TCACATCAGAAGAAGAAGTT+TGG | 0.372747 | 5.3:+68083530 | MS.gene29731:CDS |
| TAATTTCTCGAGAATCGTTT+TGG | 0.386491 | 5.3:-68082304 | None:intergenic |
| TTTATCATTTCGCTTTCCTA+AGG | 0.403073 | 5.3:-68083573 | None:intergenic |
| GTGCTGCTGAAGAGGCTCTA+AGG | 0.408138 | 5.3:+68083213 | MS.gene29731:CDS |
| TAACTCGGTTAGCAACATAT+CGG | 0.412438 | 5.3:-68082472 | None:intergenic |
| ACTCAATCGTGCGAAAATCT+TGG | 0.420277 | 5.3:+68082366 | MS.gene29731:CDS |
| GATGTGATATGGACTGCTTT+TGG | 0.421669 | 5.3:-68083514 | None:intergenic |
| TTCTTCAAGATAGACTCTTC+AGG | 0.424981 | 5.3:-68083038 | None:intergenic |
| TGGTTACCTCTTTACAAACT+TGG | 0.449781 | 5.3:+68080917 | MS.gene29731:CDS |
| GATTCCTGAAAACTATCTAA+AGG | 0.452972 | 5.3:+68083241 | MS.gene29731:CDS |
| ACCAGAAGCTCCTGTAGAAA+AGG | 0.464298 | 5.3:+68082683 | MS.gene29731:CDS |
| AGAGGAACAAGCAGCAAAGT+TGG | 0.467968 | 5.3:+68082221 | MS.gene29731:CDS |
| AACTCGGTTAGCAACATATC+GGG | 0.470317 | 5.3:-68082471 | None:intergenic |
| GCTTCACCAAGTTTGTAAAG+AGG | 0.476692 | 5.3:-68080923 | None:intergenic |
| ATTCCTGAAAACTATCTAAA+GGG | 0.483531 | 5.3:+68083242 | MS.gene29731:CDS |
| AAAGCAACGTGCTGCTGAAG+AGG | 0.489875 | 5.3:+68083205 | MS.gene29731:CDS |
| CGTTGCTCTAGCTGAAATCA+AGG | 0.490440 | 5.3:+68082908 | MS.gene29731:CDS |
| GGTAAAACTATAAACGATCT+CGG | 0.493887 | 5.3:+68082516 | MS.gene29731:CDS |
| GGAAGAGCACGCTGAAACAA+AGG | 0.495443 | 5.3:+68083415 | MS.gene29731:CDS |
| TTCAGCTAGAGCAACGGCTT+CGG | 0.499012 | 5.3:-68082901 | None:intergenic |
| GCTTCTTTAACAGACTCAAA+TGG | 0.500848 | 5.3:-68080866 | None:intergenic |
| TTATCATTTCGCTTTCCTAA+GGG | 0.506744 | 5.3:-68083572 | None:intergenic |
| TTTGTCGTAGTATATTCGTC+AGG | 0.509274 | 5.3:-68083386 | None:intergenic |
| AGATCTACTCAGCAGGAAGC+AGG | 0.509837 | 5.3:+68083361 | MS.gene29731:CDS |
| GTGGATGTTGAACAGTTCAA+TGG | 0.511134 | 5.3:+68082750 | MS.gene29731:CDS |
| ATGCAGAAGTTTCGAAGCAA+GGG | 0.522502 | 5.3:+68082790 | MS.gene29731:CDS |
| CTTCGACATAAAGAAAATAG+AGG | 0.524074 | 5.3:+68082203 | MS.gene29731:CDS |
| GTAAAACTATAAACGATCTC+GGG | 0.525454 | 5.3:+68082517 | MS.gene29731:CDS |
| TGAAGAGTCTATCTTGAAGA+AGG | 0.526219 | 5.3:+68083040 | MS.gene29731:CDS |
| CTGAAGAGGCTCTAAGGAGA+TGG | 0.529424 | 5.3:+68083219 | MS.gene29731:CDS |
| CAATGAGAGATCTACTCAGC+AGG | 0.529935 | 5.3:+68083354 | MS.gene29731:CDS |
| GAAATCAAGGCTCTATCTGC+TGG | 0.535146 | 5.3:+68082921 | MS.gene29731:CDS |
| TTTGAATAAGAAGATGAAGA+AGG | 0.538398 | 5.3:+68082563 | MS.gene29731:CDS |
| CACCCCTCAAAAGGTTGTGA+AGG | 0.541484 | 5.3:+68082719 | MS.gene29731:CDS |
| TCAAATGCTTCGAGCAATGA+GGG | 0.544411 | 5.3:+68083448 | MS.gene29731:CDS |
| ATCCGAATATCATTCCCCTT+AGG | 0.550700 | 5.3:+68083557 | MS.gene29731:CDS |
| GAAACCGAGGATCTTACAGC+TGG | 0.555875 | 5.3:-68083332 | None:intergenic |
| CAACTGAACATGAGAATGAC+GGG | 0.556282 | 5.3:+68083486 | MS.gene29731:CDS |
| CTTGATTTCAGCTAGAGCAA+CGG | 0.565358 | 5.3:-68082907 | None:intergenic |
| CTTGATGTGCTTGAAGAACT+GGG | 0.566278 | 5.3:+68082276 | MS.gene29731:CDS |
| CCGTCATTCTCATGTTCAGT+TGG | 0.568973 | 5.3:-68083485 | None:intergenic |
| ATATACTACGACAAAGGAGA+TGG | 0.572916 | 5.3:+68083394 | MS.gene29731:CDS |
| AAAGAAGCTAAGATGAACCT+TGG | 0.577340 | 5.3:+68082495 | MS.gene29731:CDS |
| GGTTGTGAAGGATTTCAAAG+TGG | 0.577609 | 5.3:+68082731 | MS.gene29731:CDS |
| AAAGATGGAAGAAGCTGCAA+TGG | 0.578367 | 5.3:+68082875 | MS.gene29731:CDS |
| TTAAGACTGCTGAGATGAGG+TGG | 0.586641 | 5.3:+68082841 | MS.gene29731:CDS |
| TGTTGAACAGTTCAATGGAA+TGG | 0.592209 | 5.3:+68082755 | MS.gene29731:CDS |
| GAAGCCAGCTGTAAGATCCT+CGG | 0.596662 | 5.3:+68083328 | MS.gene29731:CDS |
| TATGCAGAAGTTTCGAAGCA+AGG | 0.596915 | 5.3:+68082789 | MS.gene29731:CDS |
| TATCATTTCGCTTTCCTAAG+GGG | 0.598187 | 5.3:-68083571 | None:intergenic |
| TCATCGAGTTATGCATAGCT+CGG | 0.600248 | 5.3:-68083265 | None:intergenic |
| AGCTATCTCTGCTCAAAATG+TGG | 0.600750 | 5.3:+68082635 | MS.gene29731:CDS |
| ATATTAAGACTGCTGAGATG+AGG | 0.602890 | 5.3:+68082838 | MS.gene29731:CDS |
| CCAACTGAACATGAGAATGA+CGG | 0.608552 | 5.3:+68083485 | MS.gene29731:CDS |
| GTCAAATGCTTCGAGCAATG+AGG | 0.623709 | 5.3:+68083447 | MS.gene29731:CDS |
| TGACGAATATACTACGACAA+AGG | 0.630375 | 5.3:+68083388 | MS.gene29731:CDS |
| CTTCAGGTATTTGAAATTCG+GGG | 0.632963 | 5.3:-68083022 | None:intergenic |
| TAGATCTCTCATTGAAACCG+AGG | 0.641066 | 5.3:-68083345 | None:intergenic |
| TCGGGCGATGAAGTATGGCA+TGG | 0.643983 | 5.3:-68082453 | None:intergenic |
| TGCAGAAGTTTCGAAGCAAG+GGG | 0.645614 | 5.3:+68082791 | MS.gene29731:CDS |
| AGTTTGTAAAGAGGTAACCA+AGG | 0.706258 | 5.3:-68080914 | None:intergenic |
| TGTTCTCGCATAGAAAATCG+CGG | 0.731658 | 5.3:-68082957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTACTGTTATGATAAAAA+AGG | + | chr5.3:68080973-68080992 | MS.gene29731:intron | 15.0% |
| !!! | ACACAATATTCTAAAAAAAT+TGG | + | chr5.3:68083106-68083125 | MS.gene29731:CDS | 15.0% |
| !!! | ATTTTGTTTATATAAGCTAT+TGG | + | chr5.3:68081320-68081339 | MS.gene29731:intron | 15.0% |
| !!! | TTTTGTTTATATAAGCTATT+GGG | + | chr5.3:68081321-68081340 | MS.gene29731:intron | 15.0% |
| !! | AAATAGAAAAAAAACAACAC+AGG | - | chr5.3:68081211-68081230 | None:intergenic | 20.0% |
| !! | ACTATAGATTGAAAATTTGT+TGG | + | chr5.3:68081271-68081290 | MS.gene29731:intron | 20.0% |
| !! | ATTCGTCAAAATATAACAAT+CGG | + | chr5.3:68082014-68082033 | MS.gene29731:intron | 20.0% |
| !!! | ATTTTAACAGAAGCTTTAAA+TGG | + | chr5.3:68083164-68083183 | MS.gene29731:CDS | 20.0% |
| !!! | CAATATTCTAAAAAAATTGG+AGG | + | chr5.3:68083109-68083128 | MS.gene29731:CDS | 20.0% |
| !!! | GTTATATTTTGACGAATAAT+AGG | - | chr5.3:68082011-68082030 | None:intergenic | 20.0% |
| !!! | TACTTCATCAATTTTGAAAT+TGG | - | chr5.3:68083075-68083094 | None:intergenic | 20.0% |
| !!! | TATTTTACTAAGCAGATTTT+TGG | - | chr5.3:68081537-68081556 | None:intergenic | 20.0% |
| ! | AAGATATGATTAGATGTATC+TGG | - | chr5.3:68081673-68081692 | None:intergenic | 25.0% |
| ! | AGATACATCTAATCATATCT+TGG | + | chr5.3:68081672-68081691 | MS.gene29731:intron | 25.0% |
| ! | ATTCCTGAAAACTATCTAAA+GGG | + | chr5.3:68083242-68083261 | MS.gene29731:CDS | 25.0% |
| ! | CTTTGTTAGATAGAATGTAT+TGG | - | chr5.3:68082106-68082125 | None:intergenic | 25.0% |
| ! | TTCGTCAAAATATAACAATC+GGG | + | chr5.3:68082015-68082034 | MS.gene29731:intron | 25.0% |
| ! | TTTGAATAAGAAGATGAAGA+AGG | + | chr5.3:68082563-68082582 | MS.gene29731:CDS | 25.0% |
| !! | AAAGTAAAATCCTTTTCTAC+AGG | - | chr5.3:68082696-68082715 | None:intergenic | 25.0% |
| !! | AGTTTTTAAATTGCACGATA+AGG | - | chr5.3:68081650-68081669 | None:intergenic | 25.0% |
| !! | TATTCTAAAAAAATTGGAGG+AGG | + | chr5.3:68083112-68083131 | MS.gene29731:CDS | 25.0% |
| !! | TCTTACACTTTTCTATTACT+TGG | + | chr5.3:68081919-68081938 | MS.gene29731:intron | 25.0% |
| !!! | AAACATAGAGCATTGAAAAT+TGG | + | chr5.3:68081840-68081859 | MS.gene29731:intron | 25.0% |
| !!! | GAAAATTGGATTTTGAGATA+AGG | + | chr5.3:68081854-68081873 | MS.gene29731:intron | 25.0% |
| AAAAAAGAGAAGTGAAAACC+TGG | - | chr5.3:68081038-68081057 | None:intergenic | 30.0% | |
| AAAAAGAGAAGTGAAAACCT+GGG | - | chr5.3:68081037-68081056 | None:intergenic | 30.0% | |
| AACATCAGAGTGAATTACAA+AGG | - | chr5.3:68082150-68082169 | None:intergenic | 30.0% | |
| AATCACACAATAATGACACT+TGG | - | chr5.3:68081738-68081757 | None:intergenic | 30.0% | |
| ACATCAGAGTGAATTACAAA+GGG | - | chr5.3:68082149-68082168 | None:intergenic | 30.0% | |
| ATTGTCAGACCAAACTAAAT+GGG | - | chr5.3:68081389-68081408 | None:intergenic | 30.0% | |
| CTTCGACATAAAGAAAATAG+AGG | + | chr5.3:68082203-68082222 | MS.gene29731:CDS | 30.0% | |
| GACTTATTTCAACTACTATG+TGG | - | chr5.3:68081574-68081593 | None:intergenic | 30.0% | |
| GATTCCTGAAAACTATCTAA+AGG | + | chr5.3:68083241-68083260 | MS.gene29731:CDS | 30.0% | |
| GGTAAAACTATAAACGATCT+CGG | + | chr5.3:68082516-68082535 | MS.gene29731:CDS | 30.0% | |
| GTAAAACTATAAACGATCTC+GGG | + | chr5.3:68082517-68082536 | MS.gene29731:CDS | 30.0% | |
| TAGTGAATTGCGAAAAATTG+AGG | + | chr5.3:68081507-68081526 | MS.gene29731:intron | 30.0% | |
| TTATCATTTCGCTTTCCTAA+GGG | - | chr5.3:68083575-68083594 | None:intergenic | 30.0% | |
| TTTATCATTTCGCTTTCCTA+AGG | - | chr5.3:68083576-68083595 | None:intergenic | 30.0% | |
| ! | AAATGTAAAATCGACTTCAC+TGG | + | chr5.3:68081003-68081022 | MS.gene29731:intron | 30.0% |
| ! | AATGTAAAATCGACTTCACT+GGG | + | chr5.3:68081004-68081023 | MS.gene29731:intron | 30.0% |
| ! | CTCTTCAGGTATTTGAAATT+CGG | - | chr5.3:68083027-68083046 | None:intergenic | 30.0% |
| ! | TAATTTCTCGAGAATCGTTT+TGG | - | chr5.3:68082307-68082326 | None:intergenic | 30.0% |
| ! | TCTTCAGGTATTTGAAATTC+GGG | - | chr5.3:68083026-68083045 | None:intergenic | 30.0% |
| ! | TTCGCAATATTTTCTCTTGA+CGG | - | chr5.3:68082425-68082444 | None:intergenic | 30.0% |
| !! | CATCTTAGCTTCTTTTAACT+CGG | - | chr5.3:68082490-68082509 | None:intergenic | 30.0% |
| !! | GATCGTTTATAGTTTTACCA+AGG | - | chr5.3:68082515-68082534 | None:intergenic | 30.0% |
| !! | GTAGAATAGTTTTACACTGT+CGG | + | chr5.3:68081773-68081792 | MS.gene29731:intron | 30.0% |
| !!! | CTTTGTCATTGCTTCTTTTT+TGG | - | chr5.3:68082661-68082680 | None:intergenic | 30.0% |
| AAAAACAACACAGGACTTCA+TGG | - | chr5.3:68081202-68081221 | None:intergenic | 35.0% | |
| AAAGAAGCTAAGATGAACCT+TGG | + | chr5.3:68082495-68082514 | MS.gene29731:CDS | 35.0% | |
| ACGAGTATGTGAAAATCACA+AGG | - | chr5.3:68082079-68082098 | None:intergenic | 35.0% | |
| AGTTTGTAAAGAGGTAACCA+AGG | - | chr5.3:68080917-68080936 | None:intergenic | 35.0% | |
| ATAATAGGCACTAACAAGAC+AGG | - | chr5.3:68081996-68082015 | None:intergenic | 35.0% | |
| ATATACTACGACAAAGGAGA+TGG | + | chr5.3:68083394-68083413 | MS.gene29731:CDS | 35.0% | |
| ATATCAGATTCGATTGTCCT+CGG | + | chr5.3:68081444-68081463 | MS.gene29731:intron | 35.0% | |
| ATATTAAGACTGCTGAGATG+AGG | + | chr5.3:68082838-68082857 | MS.gene29731:CDS | 35.0% | |
| CATCAGAGTGAATTACAAAG+GGG | - | chr5.3:68082148-68082167 | None:intergenic | 35.0% | |
| CATTGTCAGACCAAACTAAA+TGG | - | chr5.3:68081390-68081409 | None:intergenic | 35.0% | |
| CTTAGTAAAATAGCAGACAG+AGG | + | chr5.3:68081545-68081564 | MS.gene29731:intron | 35.0% | |
| CTTCTTCTTCTGATGTGATA+TGG | - | chr5.3:68083528-68083547 | None:intergenic | 35.0% | |
| GCTTCTTTAACAGACTCAAA+TGG | - | chr5.3:68080869-68080888 | None:intergenic | 35.0% | |
| TAACTCGGTTAGCAACATAT+CGG | - | chr5.3:68082475-68082494 | None:intergenic | 35.0% | |
| TATCATTTCGCTTTCCTAAG+GGG | - | chr5.3:68083574-68083593 | None:intergenic | 35.0% | |
| TCACATCAGAAGAAGAAGTT+TGG | + | chr5.3:68083530-68083549 | MS.gene29731:CDS | 35.0% | |
| TGAAGAGTCTATCTTGAAGA+AGG | + | chr5.3:68083040-68083059 | MS.gene29731:CDS | 35.0% | |
| TGACGAATATACTACGACAA+AGG | + | chr5.3:68083388-68083407 | MS.gene29731:CDS | 35.0% | |
| TGCAGAAAACCCATTTAGTT+TGG | + | chr5.3:68081377-68081396 | MS.gene29731:intron | 35.0% | |
| TGGTTACCTCTTTACAAACT+TGG | + | chr5.3:68080917-68080936 | MS.gene29731:CDS | 35.0% | |
| TGTAAGATCAGAGTCGAATT+TGG | - | chr5.3:68081906-68081925 | None:intergenic | 35.0% | |
| TGTTGAACAGTTCAATGGAA+TGG | + | chr5.3:68082755-68082774 | MS.gene29731:CDS | 35.0% | |
| TTCCTAAGGGGAATGATATT+CGG | - | chr5.3:68083562-68083581 | None:intergenic | 35.0% | |
| TTCTTCAAGATAGACTCTTC+AGG | - | chr5.3:68083041-68083060 | None:intergenic | 35.0% | |
| TTTGTCGTAGTATATTCGTC+AGG | - | chr5.3:68083389-68083408 | None:intergenic | 35.0% | |
| ! | AAAGAAGCTGTTACTCGTTT+TGG | + | chr5.3:68080881-68080900 | MS.gene29731:CDS | 35.0% |
| ! | AAATCCTTCACAACCTTTTG+AGG | - | chr5.3:68082726-68082745 | None:intergenic | 35.0% |
| ! | AATCCTTCACAACCTTTTGA+GGG | - | chr5.3:68082725-68082744 | None:intergenic | 35.0% |
| ! | ATGTAAAATCGACTTCACTG+GGG | + | chr5.3:68081005-68081024 | MS.gene29731:intron | 35.0% |
| ! | CTTCAGGTATTTGAAATTCG+GGG | - | chr5.3:68083025-68083044 | None:intergenic | 35.0% |
| ! | TTGGTCTGACAATGTTACTT+TGG | + | chr5.3:68081396-68081415 | MS.gene29731:intron | 35.0% |
| !! | TGGTCTGACAATGTTACTTT+GGG | + | chr5.3:68081397-68081416 | MS.gene29731:intron | 35.0% |
| AAAGATGGAAGAAGCTGCAA+TGG | + | chr5.3:68082875-68082894 | MS.gene29731:CDS | 40.0% | |
| AACTCGGTTAGCAACATATC+GGG | - | chr5.3:68082474-68082493 | None:intergenic | 40.0% | |
| AAGAAGCCAAACTAGTACAC+TGG | - | chr5.3:68081478-68081497 | None:intergenic | 40.0% | |
| ACTCAATCGTGCGAAAATCT+TGG | + | chr5.3:68082366-68082385 | MS.gene29731:CDS | 40.0% | |
| ACTTGATGTGCTTGAAGAAC+TGG | + | chr5.3:68082275-68082294 | MS.gene29731:CDS | 40.0% | |
| AGCTATCTCTGCTCAAAATG+TGG | + | chr5.3:68082635-68082654 | MS.gene29731:CDS | 40.0% | |
| ATCCGAATATCATTCCCCTT+AGG | + | chr5.3:68083557-68083576 | MS.gene29731:CDS | 40.0% | |
| ATGCAGAAGTTTCGAAGCAA+GGG | + | chr5.3:68082790-68082809 | MS.gene29731:CDS | 40.0% | |
| CAACTGAACATGAGAATGAC+GGG | + | chr5.3:68083486-68083505 | MS.gene29731:CDS | 40.0% | |
| CCAAACTAGTACACTGGTAT+TGG | - | chr5.3:68081472-68081491 | None:intergenic | 40.0% | |
| CCAACTGAACATGAGAATGA+CGG | + | chr5.3:68083485-68083504 | MS.gene29731:CDS | 40.0% | |
| CCAATACCAGTGTACTAGTT+TGG | + | chr5.3:68081469-68081488 | MS.gene29731:intron | 40.0% | |
| CTTGATGTGCTTGAAGAACT+GGG | + | chr5.3:68082276-68082295 | MS.gene29731:CDS | 40.0% | |
| CTTGATTTCAGCTAGAGCAA+CGG | - | chr5.3:68082910-68082929 | None:intergenic | 40.0% | |
| GAAAATAACAGCCACCATTC+AGG | - | chr5.3:68081609-68081628 | None:intergenic | 40.0% | |
| GCTTCACCAAGTTTGTAAAG+AGG | - | chr5.3:68080926-68080945 | None:intergenic | 40.0% | |
| GGTTGTGAAGGATTTCAAAG+TGG | + | chr5.3:68082731-68082750 | MS.gene29731:CDS | 40.0% | |
| GTGGATGTTGAACAGTTCAA+TGG | + | chr5.3:68082750-68082769 | MS.gene29731:CDS | 40.0% | |
| TAGATCTCTCATTGAAACCG+AGG | - | chr5.3:68083348-68083367 | None:intergenic | 40.0% | |
| TATGCAGAAGTTTCGAAGCA+AGG | + | chr5.3:68082789-68082808 | MS.gene29731:CDS | 40.0% | |
| TCAAATGCTTCGAGCAATGA+GGG | + | chr5.3:68083448-68083467 | MS.gene29731:CDS | 40.0% | |
| TCATCGAGTTATGCATAGCT+CGG | - | chr5.3:68083268-68083287 | None:intergenic | 40.0% | |
| TCTACGAAACCAGAGATTCT+GGG | - | chr5.3:68081159-68081178 | None:intergenic | 40.0% | |
| TGTTCTCGCATAGAAAATCG+CGG | - | chr5.3:68082960-68082979 | None:intergenic | 40.0% | |
| TTTGCTGCGTAGAACTTCTT+TGG | - | chr5.3:68083141-68083160 | None:intergenic | 40.0% | |
| ! | ATCCTTCACAACCTTTTGAG+GGG | - | chr5.3:68082724-68082743 | None:intergenic | 40.0% |
| ! | GCAATATTTTCTCTTGACGG+TGG | - | chr5.3:68082422-68082441 | None:intergenic | 40.0% |
| ! | GTGGTTTGCAGCTAAAAAGA+TGG | + | chr5.3:68082860-68082879 | MS.gene29731:CDS | 40.0% |
| ! | TACTTTTGACACCCCTCAAA+AGG | + | chr5.3:68082710-68082729 | MS.gene29731:CDS | 40.0% |
| !! | AGGAAAGACTTTTTCTCGAG+AGG | + | chr5.3:68082583-68082602 | MS.gene29731:CDS | 40.0% |
| !! | GATGTGATATGGACTGCTTT+TGG | - | chr5.3:68083517-68083536 | None:intergenic | 40.0% |
| ACATATCGGGCGATGAAGTA+TGG | - | chr5.3:68082461-68082480 | None:intergenic | 45.0% | |
| ACCAGAAGCTCCTGTAGAAA+AGG | + | chr5.3:68082683-68082702 | MS.gene29731:CDS | 45.0% | |
| ACTTCATGGCCCAATGGATA+AGG | - | chr5.3:68081188-68081207 | None:intergenic | 45.0% | |
| AGAGGAACAAGCAGCAAAGT+TGG | + | chr5.3:68082221-68082240 | MS.gene29731:CDS | 45.0% | |
| CAATGAGAGATCTACTCAGC+AGG | + | chr5.3:68083354-68083373 | MS.gene29731:CDS | 45.0% | |
| CCGTCATTCTCATGTTCAGT+TGG | - | chr5.3:68083488-68083507 | None:intergenic | 45.0% | |
| CGTTGCTCTAGCTGAAATCA+AGG | + | chr5.3:68082908-68082927 | MS.gene29731:CDS | 45.0% | |
| GAAATCAAGGCTCTATCTGC+TGG | + | chr5.3:68082921-68082940 | MS.gene29731:CDS | 45.0% | |
| GGGACTAACAAGATGCGTTA+GGG | + | chr5.3:68082035-68082054 | MS.gene29731:intron | 45.0% | |
| GTCAAATGCTTCGAGCAATG+AGG | + | chr5.3:68083447-68083466 | MS.gene29731:CDS | 45.0% | |
| GTCTACGAAACCAGAGATTC+TGG | - | chr5.3:68081160-68081179 | None:intergenic | 45.0% | |
| TCATCTAGCAGCAACCTGAA+TGG | + | chr5.3:68081592-68081611 | MS.gene29731:intron | 45.0% | |
| TGCAGAAGTTTCGAAGCAAG+GGG | + | chr5.3:68082791-68082810 | MS.gene29731:CDS | 45.0% | |
| TTAAGACTGCTGAGATGAGG+TGG | + | chr5.3:68082841-68082860 | MS.gene29731:CDS | 45.0% | |
| ! | CGGCCCTTTAGATAGTTTTC+AGG | - | chr5.3:68083248-68083267 | None:intergenic | 45.0% |
| ! | GAAGCTGTTACTCGTTTTGG+TGG | + | chr5.3:68080884-68080903 | MS.gene29731:CDS | 45.0% |
| ! | TCCTTTTCTACAGGAGCTTC+TGG | - | chr5.3:68082687-68082706 | None:intergenic | 45.0% |
| ! | TTTTCTACAGGAGCTTCTGG+TGG | - | chr5.3:68082684-68082703 | None:intergenic | 45.0% |
| !! | ACTTTTTCTCGAGAGGACAC+GGG | + | chr5.3:68082590-68082609 | MS.gene29731:CDS | 45.0% |
| !! | GACTTTTTCTCGAGAGGACA+CGG | + | chr5.3:68082589-68082608 | MS.gene29731:CDS | 45.0% |
| !! | GTTACTCGTTTTGGTGGAAG+TGG | + | chr5.3:68080890-68080909 | MS.gene29731:CDS | 45.0% |
| !! | TAAATAATAAATAATAGTAT+CGG | - | chr5.3:68081814-68081833 | None:intergenic | 5.0% |
| AGACCAGCGCCTTATCCATT+GGG | + | chr5.3:68081176-68081195 | MS.gene29731:intron | 50.0% | |
| AGATCTACTCAGCAGGAAGC+AGG | + | chr5.3:68083361-68083380 | MS.gene29731:CDS | 50.0% | |
| CACCCCTCAAAAGGTTGTGA+AGG | + | chr5.3:68082719-68082738 | MS.gene29731:CDS | 50.0% | |
| CGGGACTAACAAGATGCGTT+AGG | + | chr5.3:68082034-68082053 | MS.gene29731:intron | 50.0% | |
| GAAACCGAGGATCTTACAGC+TGG | - | chr5.3:68083335-68083354 | None:intergenic | 50.0% | |
| GAAGCCAGCTGTAAGATCCT+CGG | + | chr5.3:68083328-68083347 | MS.gene29731:CDS | 50.0% | |
| TAGACCAGCGCCTTATCCAT+TGG | + | chr5.3:68081175-68081194 | MS.gene29731:intron | 50.0% | |
| TCTAGCAGCAACCTGAATGG+TGG | + | chr5.3:68081595-68081614 | MS.gene29731:intron | 50.0% | |
| TTCAGCTAGAGCAACGGCTT+CGG | - | chr5.3:68082904-68082923 | None:intergenic | 50.0% | |
| ! | AAAGCAACGTGCTGCTGAAG+AGG | + | chr5.3:68083205-68083224 | MS.gene29731:CDS | 50.0% |
| ! | GGAAGAGCACGCTGAAACAA+AGG | + | chr5.3:68083415-68083434 | MS.gene29731:CDS | 50.0% |
| !! | CTGAAGAGGCTCTAAGGAGA+TGG | + | chr5.3:68083219-68083238 | MS.gene29731:CDS | 50.0% |
| !! | GTTTTGGTGGAAGTGGTCCT+TGG | + | chr5.3:68080897-68080916 | MS.gene29731:CDS | 50.0% |
| CACAGGACTTCATGGCCCAA+TGG | - | chr5.3:68081194-68081213 | None:intergenic | 55.0% | |
| GGGATCGAACCCAGAATCTC+TGG | + | chr5.3:68081147-68081166 | MS.gene29731:intron | 55.0% | |
| TCGGGCGATGAAGTATGGCA+TGG | - | chr5.3:68082456-68082475 | None:intergenic | 55.0% | |
| ! | GTGCTGCTGAAGAGGCTCTA+AGG | + | chr5.3:68083213-68083232 | MS.gene29731:CDS | 55.0% |
| !! | GTACACTGGTATTGGCACCG+AGG | - | chr5.3:68081464-68081483 | None:intergenic | 55.0% |
| CTTCACTGGGGATCGAACCC+AGG | + | chr5.3:68081017-68081036 | MS.gene29731:intron | 60.0% | |
| TGGCCCAATGGATAAGGCGC+TGG | - | chr5.3:68081182-68081201 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 68080863 | 68083604 | 68080863 | ID=MS.gene29731 |
| chr5.3 | mRNA | 68080863 | 68083604 | 68080863 | ID=MS.gene29731.t1;Parent=MS.gene29731 |
| chr5.3 | exon | 68080863 | 68080949 | 68080863 | ID=MS.gene29731.t1.exon1;Parent=MS.gene29731.t1 |
| chr5.3 | CDS | 68080863 | 68080949 | 68080863 | ID=cds.MS.gene29731.t1;Parent=MS.gene29731.t1 |
| chr5.3 | exon | 68082189 | 68083604 | 68082189 | ID=MS.gene29731.t1.exon2;Parent=MS.gene29731.t1 |
| chr5.3 | CDS | 68082189 | 68083604 | 68082189 | ID=cds.MS.gene29731.t1;Parent=MS.gene29731.t1 |
| Gene Sequence |
| Protein sequence |
