Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30204.t1 | XP_013451289.1 | 92.3 | 274 | 21 | 0 | 1 | 274 | 1 | 274 | 4.80E-134 | 487.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30204.t1 | A0A072U6F4 | 92.3 | 274 | 21 | 0 | 1 | 274 | 1 | 274 | 3.4e-134 | 487.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene30204 | 0.80487 | 1.75E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene30204 | 0.812635 | 3.84E-51 | -1.69E-46 |
| MS.gene050770 | MS.gene30204 | 0.802593 | 5.21E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene30204 | 0.814446 | 1.53E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene30204 | 0.812514 | 4.08E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene30204 | 0.812091 | 5.05E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene30204 | 0.804759 | 1.85E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene30204 | 0.809956 | 1.46E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene30204 | 0.825863 | 3.72E-54 | -1.69E-46 |
| MS.gene054803 | MS.gene30204 | 0.824848 | 6.46E-54 | -1.69E-46 |
| MS.gene054804 | MS.gene30204 | 0.828723 | 7.67E-55 | -1.69E-46 |
| MS.gene055499 | MS.gene30204 | 0.837111 | 6.30E-57 | -1.69E-46 |
| MS.gene056942 | MS.gene30204 | 0.819275 | 1.27E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene30204 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene30204 | 0.821623 | 3.66E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene30204 | 0.821583 | 3.74E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene30204 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene30204 | 0.834182 | 3.48E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30204 | MS.gene92024 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30204.t1 | MTR_6g017240 | 96.350 | 274 | 10 | 0 | 1 | 274 | 1 | 274 | 0.0 | 545 |
| MS.gene30204.t1 | MTR_7g018370 | 64.684 | 269 | 85 | 6 | 11 | 274 | 9 | 272 | 4.02e-107 | 313 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30204.t1 | AT5G16030 | 52.697 | 241 | 93 | 8 | 14 | 238 | 2 | 237 | 1.54e-66 | 208 |
| MS.gene30204.t1 | AT5G16030 | 52.282 | 241 | 94 | 7 | 14 | 238 | 2 | 237 | 3.41e-65 | 207 |
| MS.gene30204.t1 | AT5G16030 | 51.807 | 249 | 91 | 8 | 14 | 238 | 2 | 245 | 5.37e-64 | 204 |
| MS.gene30204.t1 | AT5G16030 | 52.066 | 242 | 94 | 8 | 14 | 238 | 2 | 238 | 1.88e-63 | 202 |
| MS.gene30204.t1 | AT3G02500 | 62.667 | 150 | 50 | 3 | 15 | 163 | 3 | 147 | 4.87e-59 | 190 |
| MS.gene30204.t1 | AT3G02500 | 62.667 | 150 | 50 | 3 | 15 | 163 | 3 | 147 | 4.94e-59 | 190 |
| MS.gene30204.t1 | AT3G02500 | 54.667 | 150 | 47 | 4 | 15 | 163 | 3 | 132 | 2.08e-45 | 154 |
| MS.gene30204.t1 | AT5G16030 | 47.020 | 151 | 65 | 3 | 99 | 238 | 1 | 147 | 4.09e-30 | 114 |
Find 42 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTGGATATACATTAAA+AGG | 0.177460 | 6.3:+13093817 | MS.gene30204:CDS |
| TATATATGCAACCCTCTTTC+AGG | 0.191682 | 6.3:+13094840 | MS.gene30204:CDS |
| TCTTTCACTACTGCTCTTAA+AGG | 0.203772 | 6.3:+13093973 | MS.gene30204:CDS |
| TCTTGTTTCATTGAACTATA+AGG | 0.296631 | 6.3:-13093637 | None:intergenic |
| TCTAGCACTGCTTCTTCTCC+TGG | 0.359111 | 6.3:+13093802 | MS.gene30204:CDS |
| AGAGTTCAATTTAACAGAAT+GGG | 0.365032 | 6.3:+13093666 | MS.gene30204:CDS |
| GATGGAGTTAAATTAGTGTT+TGG | 0.368823 | 6.3:-13095666 | None:intergenic |
| CAAGATCAGTTTATAAAAGC+TGG | 0.391782 | 6.3:+13094760 | MS.gene30204:CDS |
| CAGAGTTCAATTTAACAGAA+TGG | 0.417830 | 6.3:+13093665 | MS.gene30204:CDS |
| AAGAGCAGTAGTGAAAGAAT+AGG | 0.426995 | 6.3:-13093968 | None:intergenic |
| GAATTTAACGCAAATCCATC+TGG | 0.452165 | 6.3:-13094795 | None:intergenic |
| GCTCTTCAATTTCATAGTCC+AGG | 0.458142 | 6.3:+13095026 | MS.gene30204:CDS |
| AGAAGAAGCAGTGCTAGAAA+TGG | 0.469708 | 6.3:-13093797 | None:intergenic |
| GATTTGCGTTAAATTCCAAA+TGG | 0.481160 | 6.3:+13094802 | MS.gene30204:CDS |
| ATATATGCAACCCTCTTTCA+GGG | 0.494830 | 6.3:+13094841 | MS.gene30204:CDS |
| GTAGTGAAAGAATAGGTTGA+AGG | 0.505121 | 6.3:-13093961 | None:intergenic |
| TCAAACTAAATCTGAGGAAG+AGG | 0.510446 | 6.3:+13095737 | MS.gene30204:CDS |
| ATTGGCACCTCCCCTGAAAG+AGG | 0.516149 | 6.3:-13094852 | None:intergenic |
| TTTGCAGATAAACATTCCAT+TGG | 0.516570 | 6.3:-13094870 | None:intergenic |
| TTCATTGAACTATAAGGAGA+TGG | 0.521597 | 6.3:-13093631 | None:intergenic |
| TCTTTCAGGGGAGGTGCCAA+TGG | 0.529572 | 6.3:+13094854 | MS.gene30204:CDS |
| AAAACACATGGCTTCCACAT+TGG | 0.533224 | 6.3:+13093600 | None:intergenic |
| AAGATCAGTTTATAAAAGCT+GGG | 0.534731 | 6.3:+13094761 | MS.gene30204:CDS |
| GATGAACAACTTTGCAGACA+AGG | 0.536730 | 6.3:+13097039 | MS.gene30204:CDS |
| ATTTGTTGACATCTCTACAA+TGG | 0.537047 | 6.3:-13095688 | None:intergenic |
| ATCAAAACAAATTCAAACAA+AGG | 0.552023 | 6.3:+13094965 | MS.gene30204:CDS |
| GAGTTCAATTTAACAGAATG+GGG | 0.572131 | 6.3:+13093667 | MS.gene30204:CDS |
| GTTGACATCTCTACAATGGA+TGG | 0.575450 | 6.3:-13095684 | None:intergenic |
| AAAGAATAAAGGAGCTGACA+TGG | 0.581041 | 6.3:-13094940 | None:intergenic |
| ACAAATTCAAACAAAGGCAA+TGG | 0.585184 | 6.3:+13094971 | MS.gene30204:CDS |
| TAGTGAAAGAATAGGTTGAA+GGG | 0.586040 | 6.3:-13093960 | None:intergenic |
| GGATTACTTGAACTAAGAGA+AGG | 0.605486 | 6.3:-13095645 | None:intergenic |
| GCATGTGCAGGTGGAAGTGA+AGG | 0.607259 | 6.3:+13096969 | MS.gene30204:intron |
| TTGGCACCTCCCCTGAAAGA+GGG | 0.611782 | 6.3:-13094851 | None:intergenic |
| AGAGATGCATGTACTCAAAG+TGG | 0.616434 | 6.3:+13095615 | MS.gene30204:CDS |
| AGATGGTTGCATTTCCAATG+TGG | 0.621268 | 6.3:-13093614 | None:intergenic |
| TGGGAGTGTTTATCACCAGA+TGG | 0.621745 | 6.3:+13094780 | MS.gene30204:CDS |
| AAGTGAAGGACAAAGAAACA+TGG | 0.633365 | 6.3:+13096983 | MS.gene30204:CDS |
| TGATAATCAAACTAAATCTG+AGG | 0.644716 | 6.3:+13095731 | MS.gene30204:CDS |
| ATGCAACCCTCTTTCAGGGG+AGG | 0.645748 | 6.3:+13094845 | MS.gene30204:CDS |
| AGTGAAGGACAAAGAAACAT+GGG | 0.649441 | 6.3:+13096984 | MS.gene30204:CDS |
| TATATGCAACCCTCTTTCAG+GGG | 0.686566 | 6.3:+13094842 | MS.gene30204:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAATAAAATATAAA+TGG | - | chr6.3:13096166-13096185 | None:intergenic | 0.0% |
| !! | ATTAATAATAAAATATAAAT+GGG | - | chr6.3:13096165-13096184 | None:intergenic | 0.0% |
| !! | AAAAAAATTATTTACATCAT+TGG | - | chr6.3:13096709-13096728 | None:intergenic | 10.0% |
| !!! | ATGATGTAAATAATTTTTTT+TGG | + | chr6.3:13096709-13096728 | MS.gene30204:intron | 10.0% |
| !!! | TTTTACTTATTTATTTGTTA+TGG | + | chr6.3:13095470-13095489 | MS.gene30204:intron | 10.0% |
| !! | AATAAATAAGTAAAAAGATG+AGG | - | chr6.3:13095465-13095484 | None:intergenic | 15.0% |
| !! | ATAATAAAATATAAATGGGT+AGG | - | chr6.3:13096161-13096180 | None:intergenic | 15.0% |
| !! | ATTATTGAACATATATAAGT+TGG | + | chr6.3:13096458-13096477 | MS.gene30204:intron | 15.0% |
| !! | ATTTATGAAGTATATCTATA+AGG | + | chr6.3:13096910-13096929 | MS.gene30204:intron | 15.0% |
| !! | TACAATAATTTATAAGGTAA+GGG | + | chr6.3:13096527-13096546 | MS.gene30204:intron | 15.0% |
| !! | TCAATCTACAATAATTTATA+AGG | + | chr6.3:13096521-13096540 | MS.gene30204:intron | 15.0% |
| !! | TTAATAAACTCAAATAATGA+AGG | + | chr6.3:13096816-13096835 | MS.gene30204:intron | 15.0% |
| !!! | AACTAGTTAATTATTTTCAT+TGG | - | chr6.3:13095392-13095411 | None:intergenic | 15.0% |
| !!! | AATAATTTTTTTTGGTACAA+TGG | + | chr6.3:13096717-13096736 | MS.gene30204:intron | 15.0% |
| !!! | AATAGTTTTACAATTTAACA+CGG | + | chr6.3:13095859-13095878 | MS.gene30204:intron | 15.0% |
| !!! | ACTTTTACATATCTAATAAT+CGG | + | chr6.3:13095418-13095437 | MS.gene30204:intron | 15.0% |
| !!! | ATTTTTCACAAAATATTACA+TGG | - | chr6.3:13096001-13096020 | None:intergenic | 15.0% |
| !!! | TAATTTTCTCAAATTATTAG+CGG | + | chr6.3:13094129-13094148 | MS.gene30204:intron | 15.0% |
| !!! | TAATTTTTTTTGTACACTAA+CGG | + | chr6.3:13094636-13094655 | MS.gene30204:intron | 15.0% |
| !! | AATCATTATGCTAATTATGA+AGG | - | chr6.3:13094016-13094035 | None:intergenic | 20.0% |
| !! | AATTTATAAACTATGAAGCA+CGG | - | chr6.3:13094196-13094215 | None:intergenic | 20.0% |
| !! | ACATCAATGTTACATATATT+TGG | - | chr6.3:13096938-13096957 | None:intergenic | 20.0% |
| !! | ATATATGTAACATTGATGTA+AGG | + | chr6.3:13096939-13096958 | MS.gene30204:intron | 20.0% |
| !! | ATCAAAACAAATTCAAACAA+AGG | + | chr6.3:13094965-13094984 | MS.gene30204:CDS | 20.0% |
| !! | CTACAATAATTTATAAGGTA+AGG | + | chr6.3:13096526-13096545 | MS.gene30204:intron | 20.0% |
| !! | GATATATAGAAGAAAGAATA+AGG | - | chr6.3:13095076-13095095 | None:intergenic | 20.0% |
| !! | TTACATGGAGTTTATATATA+TGG | - | chr6.3:13095986-13096005 | None:intergenic | 20.0% |
| !! | TTATTTACATCATTGGTATA+TGG | - | chr6.3:13096702-13096721 | None:intergenic | 20.0% |
| !!! | AATATTTTGTGAAAAATGTG+TGG | + | chr6.3:13096004-13096023 | MS.gene30204:intron | 20.0% |
| !!! | ATAACTTGTCTTATTTTTTG+TGG | - | chr6.3:13096849-13096868 | None:intergenic | 20.0% |
| !!! | ATAAGTTATGGTCATTTTTT+GGG | - | chr6.3:13096607-13096626 | None:intergenic | 20.0% |
| !!! | CAAATATTTAAAATATCGAC+TGG | - | chr6.3:13095542-13095561 | None:intergenic | 20.0% |
| !!! | CTTTAGTTCATATTTGAATT+TGG | - | chr6.3:13094475-13094494 | None:intergenic | 20.0% |
| !!! | TAACTTGTCTTATTTTTTGT+GGG | - | chr6.3:13096848-13096867 | None:intergenic | 20.0% |
| !!! | TATAAGTTATGGTCATTTTT+TGG | - | chr6.3:13096608-13096627 | None:intergenic | 20.0% |
| !!! | TGTTTTGATGAAAAGAATAA+AGG | - | chr6.3:13094954-13094973 | None:intergenic | 20.0% |
| !!! | TTAATTTCTTTTTTCTCCAT+TGG | + | chr6.3:13096788-13096807 | MS.gene30204:intron | 20.0% |
| !!! | TTTGTTATGGAGTTTAATAA+TGG | + | chr6.3:13095483-13095502 | MS.gene30204:intron | 20.0% |
| ! | AAGATCAGTTTATAAAAGCT+GGG | + | chr6.3:13094761-13094780 | MS.gene30204:CDS | 25.0% |
| ! | AGAGTTCAATTTAACAGAAT+GGG | + | chr6.3:13093666-13093685 | MS.gene30204:CDS | 25.0% |
| ! | ATAAAATATAAATGGGTAGG+TGG | - | chr6.3:13096158-13096177 | None:intergenic | 25.0% |
| ! | CAACATGAAACAATTATAGA+AGG | + | chr6.3:13096887-13096906 | MS.gene30204:intron | 25.0% |
| ! | CTCAAAAGGTTTGAAAAAAA+TGG | - | chr6.3:13096570-13096589 | None:intergenic | 25.0% |
| ! | GAGTTTATATATATGGCTAT+TGG | - | chr6.3:13095979-13095998 | None:intergenic | 25.0% |
| ! | TATGCAGAAAAGAAAAATGA+GGG | + | chr6.3:13095585-13095604 | MS.gene30204:intron | 25.0% |
| ! | TGATAATCAAACTAAATCTG+AGG | + | chr6.3:13095731-13095750 | MS.gene30204:CDS | 25.0% |
| ! | TTATGCAGAAAAGAAAAATG+AGG | + | chr6.3:13095584-13095603 | MS.gene30204:intron | 25.0% |
| ! | TTGTTTCATGTTGTAGTAAT+AGG | - | chr6.3:13096880-13096899 | None:intergenic | 25.0% |
| ! | TTTAGTGTAATTACAAGTGT+CGG | - | chr6.3:13094104-13094123 | None:intergenic | 25.0% |
| !! | CTAAATTTTTCTCTCATCTA+TGG | - | chr6.3:13095292-13095311 | None:intergenic | 25.0% |
| !! | GAATTTTGAATACTTATCCA+AGG | + | chr6.3:13095342-13095361 | MS.gene30204:intron | 25.0% |
| !! | TCTTGTTTCATTGAACTATA+AGG | - | chr6.3:13093640-13093659 | None:intergenic | 25.0% |
| !! | TTACCTTTTAATGTATATCC+AGG | - | chr6.3:13093823-13093842 | None:intergenic | 25.0% |
| !!! | ATCATGGTTTGAATTTTGAT+TGG | - | chr6.3:13096308-13096327 | None:intergenic | 25.0% |
| !!! | TCATTTTTCTTTTCTGCATA+AGG | - | chr6.3:13095585-13095604 | None:intergenic | 25.0% |
| AAACATGAGAAACTCTACTA+TGG | - | chr6.3:13096257-13096276 | None:intergenic | 30.0% | |
| AAATGACCATAACTTATACG+TGG | + | chr6.3:13096610-13096629 | MS.gene30204:intron | 30.0% | |
| AAGACTTGATTCTCTTATCT+TGG | - | chr6.3:13095952-13095971 | None:intergenic | 30.0% | |
| AAGTATGTGAATTAAGAACC+TGG | - | chr6.3:13095047-13095066 | None:intergenic | 30.0% | |
| ACAAATTCAAACAAAGGCAA+TGG | + | chr6.3:13094971-13094990 | MS.gene30204:CDS | 30.0% | |
| ATCTTCTCAAACAATCAAAC+GGG | - | chr6.3:13096373-13096392 | None:intergenic | 30.0% | |
| CAAGATCAGTTTATAAAAGC+TGG | + | chr6.3:13094760-13094779 | MS.gene30204:CDS | 30.0% | |
| CAGAGTTCAATTTAACAGAA+TGG | + | chr6.3:13093665-13093684 | MS.gene30204:CDS | 30.0% | |
| CATGAAATTGGTTGACAAAT+AGG | - | chr6.3:13094717-13094736 | None:intergenic | 30.0% | |
| CTATTTGTCAACCAATTTCA+TGG | + | chr6.3:13094715-13094734 | MS.gene30204:intron | 30.0% | |
| GAGTTCAATTTAACAGAATG+GGG | + | chr6.3:13093667-13093686 | MS.gene30204:CDS | 30.0% | |
| GAGTTTATTAACTACACCAA+TGG | - | chr6.3:13096807-13096826 | None:intergenic | 30.0% | |
| GATCTTCTCAAACAATCAAA+CGG | - | chr6.3:13096374-13096393 | None:intergenic | 30.0% | |
| GATGGAGTTAAATTAGTGTT+TGG | - | chr6.3:13095669-13095688 | None:intergenic | 30.0% | |
| GATTTGCGTTAAATTCCAAA+TGG | + | chr6.3:13094802-13094821 | MS.gene30204:CDS | 30.0% | |
| GCAATATATCACCATGAAAT+TGG | - | chr6.3:13094729-13094748 | None:intergenic | 30.0% | |
| TAGGACGTACTAGATATATT+TGG | + | chr6.3:13096029-13096048 | MS.gene30204:intron | 30.0% | |
| TATGAAGGTAGTTCATTCTT+TGG | - | chr6.3:13094001-13094020 | None:intergenic | 30.0% | |
| TCAAGATAATGTGTCTCAAA+AGG | - | chr6.3:13096584-13096603 | None:intergenic | 30.0% | |
| TCTCCTGGATATACATTAAA+AGG | + | chr6.3:13093817-13093836 | MS.gene30204:CDS | 30.0% | |
| TTATCTGCAAAAACTCTTAG+TGG | + | chr6.3:13094882-13094901 | MS.gene30204:CDS | 30.0% | |
| TTCATTGAACTATAAGGAGA+TGG | - | chr6.3:13093634-13093653 | None:intergenic | 30.0% | |
| TTGATATAAGTAGCTACTAG+TGG | + | chr6.3:13096423-13096442 | MS.gene30204:intron | 30.0% | |
| TTGTGAAAAATGTGTGGTAT+AGG | + | chr6.3:13096010-13096029 | MS.gene30204:intron | 30.0% | |
| TTTGCAGATAAACATTCCAT+TGG | - | chr6.3:13094873-13094892 | None:intergenic | 30.0% | |
| ! | AGTTTTTGTCAAAATCACGA+TGG | + | chr6.3:13094506-13094525 | MS.gene30204:intron | 30.0% |
| ! | ATTTGTTGACATCTCTACAA+TGG | - | chr6.3:13095691-13095710 | None:intergenic | 30.0% |
| ! | TAGTGAAAGAATAGGTTGAA+GGG | - | chr6.3:13093963-13093982 | None:intergenic | 30.0% |
| ! | TTTTGAATACTTATCCAAGG+AGG | + | chr6.3:13095345-13095364 | MS.gene30204:intron | 30.0% |
| !!! | AGTAGTTTTTTTTACCTCCT+TGG | - | chr6.3:13095362-13095381 | None:intergenic | 30.0% |
| !!! | ATGGTTTGAATTTTGATTGG+AGG | - | chr6.3:13096305-13096324 | None:intergenic | 30.0% |
| !!! | TGGTTTGAATTTTGATTGGA+GGG | - | chr6.3:13096304-13096323 | None:intergenic | 30.0% |
| AAAATCACATTAAGCCACGT+TGG | + | chr6.3:13094379-13094398 | MS.gene30204:intron | 35.0% | |
| AAAGAATAAAGGAGCTGACA+TGG | - | chr6.3:13094943-13094962 | None:intergenic | 35.0% | |
| AACCTTGTTCAATAAGACCA+AGG | - | chr6.3:13095201-13095220 | None:intergenic | 35.0% | |
| AAGAGCAGTAGTGAAAGAAT+AGG | - | chr6.3:13093971-13093990 | None:intergenic | 35.0% | |
| AAGCAACCACGTATAAGTTA+TGG | - | chr6.3:13096619-13096638 | None:intergenic | 35.0% | |
| AAGTGAAGGACAAAGAAACA+TGG | + | chr6.3:13096983-13097002 | MS.gene30204:CDS | 35.0% | |
| AGTGAAGGACAAAGAAACAT+GGG | + | chr6.3:13096984-13097003 | MS.gene30204:CDS | 35.0% | |
| ATATATGCAACCCTCTTTCA+GGG | + | chr6.3:13094841-13094860 | MS.gene30204:CDS | 35.0% | |
| CTAACTTGACAAAATCACGA+TGG | + | chr6.3:13094355-13094374 | MS.gene30204:intron | 35.0% | |
| GAATTTAACGCAAATCCATC+TGG | - | chr6.3:13094798-13094817 | None:intergenic | 35.0% | |
| GAGTGAGAATGACAAAATCA+TGG | - | chr6.3:13094453-13094472 | None:intergenic | 35.0% | |
| GGATTACTTGAACTAAGAGA+AGG | - | chr6.3:13095648-13095667 | None:intergenic | 35.0% | |
| GTCCAATTGAAACAGAGATA+GGG | - | chr6.3:13096056-13096075 | None:intergenic | 35.0% | |
| TAAACTATGAAGCACGGATA+CGG | - | chr6.3:13094190-13094209 | None:intergenic | 35.0% | |
| TATATATGCAACCCTCTTTC+AGG | + | chr6.3:13094840-13094859 | MS.gene30204:CDS | 35.0% | |
| TCAAACTAAATCTGAGGAAG+AGG | + | chr6.3:13095737-13095756 | MS.gene30204:CDS | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr6.3:13094135-13094154 | MS.gene30204:intron | 35.0% | |
| TCTCACGATATAACGAATCA+TGG | - | chr6.3:13096324-13096343 | None:intergenic | 35.0% | |
| TCTTCTCAAACAATCAAACG+GGG | - | chr6.3:13096372-13096391 | None:intergenic | 35.0% | |
| TCTTTCACTACTGCTCTTAA+AGG | + | chr6.3:13093973-13093992 | MS.gene30204:CDS | 35.0% | |
| TGAGAATGACAAAATCATGG+TGG | - | chr6.3:13094450-13094469 | None:intergenic | 35.0% | |
| TGTACATCGTATACCAACTT+CGG | - | chr6.3:13095227-13095246 | None:intergenic | 35.0% | |
| TGTCCAATTGAAACAGAGAT+AGG | - | chr6.3:13096057-13096076 | None:intergenic | 35.0% | |
| TGTGTAGACAGCAAAAAACT+CGG | - | chr6.3:13096119-13096138 | None:intergenic | 35.0% | |
| TTTCTGGATCATGGTTCAAT+CGG | - | chr6.3:13095514-13095533 | None:intergenic | 35.0% | |
| ! | ATATCGACTGGAATAGTTTC+TGG | - | chr6.3:13095530-13095549 | None:intergenic | 35.0% |
| ! | CTTTTCTGCTTCATTCCATT+TGG | - | chr6.3:13094820-13094839 | None:intergenic | 35.0% |
| ! | GTAGTGAAAGAATAGGTTGA+AGG | - | chr6.3:13093964-13093983 | None:intergenic | 35.0% |
| !! | AAGACCAAGGTATTGTACTA+GGG | - | chr6.3:13095188-13095207 | None:intergenic | 35.0% |
| !! | TAAGACCAAGGTATTGTACT+AGG | - | chr6.3:13095189-13095208 | None:intergenic | 35.0% |
| !! | TACCTTGGTCTTATTGAACA+AGG | + | chr6.3:13095196-13095215 | MS.gene30204:intron | 35.0% |
| !!! | TTGAATTTTGATTGGAGGGT+TGG | - | chr6.3:13096300-13096319 | None:intergenic | 35.0% |
| ACAATCAAATTGTGCACGTG+TGG | + | chr6.3:13094265-13094284 | MS.gene30204:intron | 40.0% | |
| ACATGCACTCGTCAAAATCA+CGG | - | chr6.3:13094324-13094343 | None:intergenic | 40.0% | |
| AGAAGAAGCAGTGCTAGAAA+TGG | - | chr6.3:13093800-13093819 | None:intergenic | 40.0% | |
| AGAGATGCATGTACTCAAAG+TGG | + | chr6.3:13095615-13095634 | MS.gene30204:CDS | 40.0% | |
| AGATGGTTGCATTTCCAATG+TGG | - | chr6.3:13093617-13093636 | None:intergenic | 40.0% | |
| ATGTTGAACCGAAAACCCAT+CGG | + | chr6.3:13095145-13095164 | MS.gene30204:intron | 40.0% | |
| CAATCAAATTGTGCACGTGT+GGG | + | chr6.3:13094266-13094285 | MS.gene30204:intron | 40.0% | |
| GCTCTTCAATTTCATAGTCC+AGG | + | chr6.3:13095026-13095045 | MS.gene30204:CDS | 40.0% | |
| GTCCCTATCTCTGTTTCAAT+TGG | + | chr6.3:13096051-13096070 | MS.gene30204:intron | 40.0% | |
| GTGTAGACAGCAAAAAACTC+GGG | - | chr6.3:13096118-13096137 | None:intergenic | 40.0% | |
| GTTGACATCTCTACAATGGA+TGG | - | chr6.3:13095687-13095706 | None:intergenic | 40.0% | |
| TAAGGTACAAATGCATGTGC+AGG | + | chr6.3:13096957-13096976 | MS.gene30204:intron | 40.0% | |
| TATATGCAACCCTCTTTCAG+GGG | + | chr6.3:13094842-13094861 | MS.gene30204:CDS | 40.0% | |
| TATGTAGTACAGTCACTCCT+CGG | + | chr6.3:13094043-13094062 | MS.gene30204:intron | 40.0% | |
| TGTAGACAGCAAAAAACTCG+GGG | - | chr6.3:13096117-13096136 | None:intergenic | 40.0% | |
| ! | CTGGAATAGTTTCTGGATCA+TGG | - | chr6.3:13095523-13095542 | None:intergenic | 40.0% |
| CAAAAAACTCGGGGAGAGTA+TGG | - | chr6.3:13096108-13096127 | None:intergenic | 45.0% | |
| CGGTGAGCTCTGTAAAATCA+TGG | + | chr6.3:13094293-13094312 | MS.gene30204:intron | 45.0% | |
| CTGACCCTAGTACAATACCT+TGG | + | chr6.3:13095181-13095200 | MS.gene30204:intron | 45.0% | |
| GAACAAGGTTGAACCGAAGT+TGG | + | chr6.3:13095211-13095230 | MS.gene30204:intron | 45.0% | |
| TCAAACGGGGTGAAGTCTAA+CGG | - | chr6.3:13096359-13096378 | None:intergenic | 45.0% | |
| TGAAGCACGGATACGGATAT+CGG | - | chr6.3:13094183-13094202 | None:intergenic | 45.0% | |
| ! | TGGACATGCCACTCAAGTTT+TGG | + | chr6.3:13096071-13096090 | MS.gene30204:intron | 45.0% |
| !! | TGGGAGTGTTTATCACCAGA+TGG | + | chr6.3:13094780-13094799 | MS.gene30204:CDS | 45.0% |
| !!! | TATTATATAACTATTTTTTA+TGG | + | chr6.3:13095263-13095282 | MS.gene30204:intron | 5.0% |
| AAGTTTCAGCGACACCAACG+TGG | - | chr6.3:13094396-13094415 | None:intergenic | 50.0% | |
| AGACCAACGAGTGAACCGAT+GGG | - | chr6.3:13095163-13095182 | None:intergenic | 50.0% | |
| ATCGGACACAACACAGACAC+TGG | - | chr6.3:13094165-13094184 | None:intergenic | 50.0% | |
| GGTACAAATGCATGTGCAGG+TGG | + | chr6.3:13096960-13096979 | MS.gene30204:intron | 50.0% | |
| TCTAGCACTGCTTCTTCTCC+TGG | + | chr6.3:13093802-13093821 | MS.gene30204:CDS | 50.0% | |
| ! | ACTCGGGGAGAGTATGGATA+CGG | - | chr6.3:13096102-13096121 | None:intergenic | 50.0% |
| ! | TCCTCGGATTAGACGTGTTC+CGG | + | chr6.3:13094059-13094078 | MS.gene30204:intron | 50.0% |
| !! | AAACCCATCGGTTCACTCGT+TGG | + | chr6.3:13095157-13095176 | MS.gene30204:intron | 50.0% |
| !! | CGAGTGAACCGATGGGTTTT+CGG | - | chr6.3:13095156-13095175 | None:intergenic | 50.0% |
| ACACGACACATGTCGGACAC+CGG | - | chr6.3:13094081-13094100 | None:intergenic | 55.0% | |
| ACCGGAACACGTCTAATCCG+AGG | - | chr6.3:13094063-13094082 | None:intergenic | 55.0% | |
| ATGCAACCCTCTTTCAGGGG+AGG | + | chr6.3:13094845-13094864 | MS.gene30204:CDS | 55.0% | |
| ATTGGCACCTCCCCTGAAAG+AGG | - | chr6.3:13094855-13094874 | None:intergenic | 55.0% | |
| ATTGTGCACGTGTGGGTGAG+CGG | + | chr6.3:13094273-13094292 | MS.gene30204:intron | 55.0% | |
| CAGACCAACGAGTGAACCGA+TGG | - | chr6.3:13095164-13095183 | None:intergenic | 55.0% | |
| CGGAGGGACCAAAACTTGAG+TGG | - | chr6.3:13096082-13096101 | None:intergenic | 55.0% | |
| GCATGTGCAGGTGGAAGTGA+AGG | + | chr6.3:13096969-13096988 | MS.gene30204:intron | 55.0% | |
| GTGTCGGACACGACACATGT+CGG | - | chr6.3:13094088-13094107 | None:intergenic | 55.0% | |
| TTGGCACCTCCCCTGAAAGA+GGG | - | chr6.3:13094854-13094873 | None:intergenic | 55.0% | |
| ! | GGGGAGAGTATGGATACGGA+GGG | - | chr6.3:13096098-13096117 | None:intergenic | 55.0% |
| !! | TCTTTCAGGGGAGGTGCCAA+TGG | + | chr6.3:13094854-13094873 | MS.gene30204:CDS | 55.0% |
| ! | CGGGGAGAGTATGGATACGG+AGG | - | chr6.3:13096099-13096118 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 13093607 | 13097060 | 13093607 | ID=MS.gene30204 |
| chr6.3 | mRNA | 13093607 | 13097060 | 13093607 | ID=MS.gene30204.t1;Parent=MS.gene30204 |
| chr6.3 | exon | 13093607 | 13093838 | 13093607 | ID=MS.gene30204.t1.exon1;Parent=MS.gene30204.t1 |
| chr6.3 | CDS | 13093607 | 13093838 | 13093607 | ID=cds.MS.gene30204.t1;Parent=MS.gene30204.t1 |
| chr6.3 | exon | 13093950 | 13093994 | 13093950 | ID=MS.gene30204.t1.exon2;Parent=MS.gene30204.t1 |
| chr6.3 | CDS | 13093950 | 13093994 | 13093950 | ID=cds.MS.gene30204.t1;Parent=MS.gene30204.t1 |
| chr6.3 | exon | 13094751 | 13095047 | 13094751 | ID=MS.gene30204.t1.exon3;Parent=MS.gene30204.t1 |
| chr6.3 | CDS | 13094751 | 13095047 | 13094751 | ID=cds.MS.gene30204.t1;Parent=MS.gene30204.t1 |
| chr6.3 | exon | 13095592 | 13095758 | 13095592 | ID=MS.gene30204.t1.exon4;Parent=MS.gene30204.t1 |
| chr6.3 | CDS | 13095592 | 13095758 | 13095592 | ID=cds.MS.gene30204.t1;Parent=MS.gene30204.t1 |
| chr6.3 | exon | 13096979 | 13097060 | 13096979 | ID=MS.gene30204.t1.exon5;Parent=MS.gene30204.t1 |
| chr6.3 | CDS | 13096979 | 13097060 | 13096979 | ID=cds.MS.gene30204.t1;Parent=MS.gene30204.t1 |
| Gene Sequence |
| Protein sequence |
