Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30769.t1 | XP_003601103.1 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 1.30E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30769.t1 | Q9LIG6 | 84.6 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 5.6e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30769.t1 | G7J3M0 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 9.1e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30769 | MS.gene70632 | PPI |
| MS.gene30769 | MS.gene038497 | PPI |
| MS.gene30769 | MS.gene29363 | PPI |
| MS.gene30769 | MS.gene83301 | PPI |
| MS.gene30769 | MS.gene009043 | PPI |
| MS.gene30769 | MS.gene022304 | PPI |
| MS.gene30769 | MS.gene009053 | PPI |
| MS.gene30769 | MS.gene25969 | PPI |
| MS.gene30769 | MS.gene61049 | PPI |
| MS.gene30769 | MS.gene069794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30769.t1 | MTR_3g073070 | 98.545 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 0.0 | 562 |
| MS.gene30769.t1 | MTR_3g073070 | 95.785 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 0.0 | 521 |
| MS.gene30769.t1 | MTR_1g069215 | 93.141 | 277 | 17 | 1 | 1 | 275 | 1 | 277 | 3.20e-159 | 444 |
| MS.gene30769.t1 | MTR_2g005900 | 41.053 | 95 | 50 | 3 | 173 | 264 | 58 | 149 | 4.67e-12 | 64.3 |
| MS.gene30769.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 5.59e-12 | 63.9 |
| MS.gene30769.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 1.08e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30769.t1 | AT3G20970 | 84.615 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 1.17e-132 | 377 |
| MS.gene30769.t1 | AT1G51390 | 81.429 | 210 | 38 | 1 | 57 | 266 | 59 | 267 | 1.29e-126 | 361 |
| MS.gene30769.t1 | AT3G20970 | 84.768 | 151 | 23 | 0 | 66 | 216 | 72 | 222 | 2.30e-93 | 275 |
| MS.gene30769.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 1.30e-12 | 65.5 |
| MS.gene30769.t1 | AT4G25910 | 47.761 | 67 | 33 | 1 | 198 | 264 | 96 | 160 | 2.03e-12 | 65.9 |
| MS.gene30769.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 3.09e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATCAAGGAACTTT+TGG | 0.209765 | 3.1:+59886423 | MS.gene30769:CDS |
| TGAAATCTTTGCCGCTATTA+TGG | 0.218248 | 3.1:+59885313 | MS.gene30769:CDS |
| CTCCTTTGTCCGGTGGAAAA+TGG | 0.263576 | 3.1:-59884885 | None:intergenic |
| TACAAATTGTTCTCGTTGCC+TGG | 0.300775 | 3.1:+59884791 | MS.gene30769:CDS |
| CCACGATGCATCTTCCGATT+TGG | 0.310465 | 3.1:-59885276 | None:intergenic |
| TTCATAGCGGAACGAGGGTT+TGG | 0.312355 | 3.1:-59885002 | None:intergenic |
| ATAATAGCGGCAAAGATTTC+AGG | 0.329502 | 3.1:-59885311 | None:intergenic |
| ATCATGAATTGCTGTGTCTT+TGG | 0.335385 | 3.1:-59885387 | None:intergenic |
| ATTATGGATTTCTACTCTTC+CGG | 0.349184 | 3.1:+59885329 | MS.gene30769:CDS |
| GTCGTAATCGTCTTCCTAAT+CGG | 0.363079 | 3.1:-59884719 | None:intergenic |
| AACATAAGAGACTCTGGATT+TGG | 0.370612 | 3.1:-59884936 | None:intergenic |
| GATTTGGAGTGGACTGTGTT+TGG | 0.376256 | 3.1:-59884920 | None:intergenic |
| GGAACGAGGGTTTGGGAAAT+CGG | 0.384488 | 3.1:-59884994 | None:intergenic |
| GTGATTAGTCTCTGGTTTGA+GGG | 0.396383 | 3.1:-59884757 | None:intergenic |
| CAAAGGTGTGGAACAAGAAT+TGG | 0.398435 | 3.1:+59887383 | MS.gene30769:CDS |
| TCATAGCGGAACGAGGGTTT+GGG | 0.402421 | 3.1:-59885001 | None:intergenic |
| TGAGGCGGAGGAAGAGAAAA+AGG | 0.403424 | 3.1:-59884850 | None:intergenic |
| TGTGATTAGTCTCTGGTTTG+AGG | 0.424340 | 3.1:-59884758 | None:intergenic |
| TTCAGAGTCACCGAAGAACT+TGG | 0.442159 | 3.1:-59886866 | None:intergenic |
| GTGAATAATGTCGGTGGTGA+GGG | 0.452534 | 3.1:+59884686 | None:intergenic |
| AGATTATTGTGATTAGTCTC+TGG | 0.463457 | 3.1:-59884765 | None:intergenic |
| TAGTGGCTGCCCAAGTTCTT+CGG | 0.469327 | 3.1:+59886856 | MS.gene30769:CDS |
| GTCTAGAAAGAGTGGTTCAC+CGG | 0.487455 | 3.1:-59885348 | None:intergenic |
| TCTTCGGTGACTCTGAAGTC+AGG | 0.490374 | 3.1:+59886872 | MS.gene30769:CDS |
| GAAACGACGGTGTTGTGCCC+AGG | 0.492397 | 3.1:-59884809 | None:intergenic |
| GGTGGGGACATTGTATATTG+TGG | 0.499614 | 3.1:+59886478 | MS.gene30769:CDS |
| AGAAGGAAATGGTGAGGCGG+AGG | 0.506688 | 3.1:-59884862 | None:intergenic |
| AGAATTGGATGGCGAGGAAG+AGG | 0.507801 | 3.1:+59887398 | MS.gene30769:CDS |
| TGAAACAGTTGCAATGATCA+AGG | 0.511525 | 3.1:+59886414 | MS.gene30769:CDS |
| GTGGAAAATGGAGAAGGAAA+TGG | 0.515300 | 3.1:-59884873 | None:intergenic |
| AAACATAGTCCTCCTTTGTC+CGG | 0.524701 | 3.1:-59884895 | None:intergenic |
| GAAGAGGAAGCAGCTTTAAG+TGG | 0.530262 | 3.1:+59887414 | MS.gene30769:CDS |
| GTGAAAATTGATTTAGCGAG+AGG | 0.538554 | 3.1:-59885029 | None:intergenic |
| GGATGAAACATAAGAGACTC+TGG | 0.539372 | 3.1:-59884942 | None:intergenic |
| ACAAATTGTTCTCGTTGCCT+GGG | 0.539498 | 3.1:+59884792 | MS.gene30769:CDS |
| ACATCCATGACAGGTTTACC+AGG | 0.541119 | 3.1:-59884963 | None:intergenic |
| CGACCAACTGTACAAGATGA+TGG | 0.541545 | 3.1:+59886457 | MS.gene30769:CDS |
| AATTGCTGTGTCTTTGGAAG+CGG | 0.555636 | 3.1:-59885381 | None:intergenic |
| CGTGAATAATGTCGGTGGTG+AGG | 0.563248 | 3.1:+59884685 | None:intergenic |
| ATCGTCAAACTTAAAATGCA+AGG | 0.563819 | 3.1:+59886827 | MS.gene30769:CDS |
| CAACTGTACAAGATGATGGT+GGG | 0.564735 | 3.1:+59886461 | MS.gene30769:CDS |
| TTGCTGCATTTACAGGTCAA+AGG | 0.565990 | 3.1:+59887366 | MS.gene30769:intron |
| CCACCATCATCTTGTACAGT+TGG | 0.572483 | 3.1:-59886460 | None:intergenic |
| GAGTCTCTTATGTTTCATCC+TGG | 0.574002 | 3.1:+59884945 | MS.gene30769:CDS |
| GGTAAACCTGTCATGGATGT+TGG | 0.587174 | 3.1:+59884966 | MS.gene30769:CDS |
| TCATCCTGGTAAACCTGTCA+TGG | 0.592000 | 3.1:+59884959 | MS.gene30769:CDS |
| CAAATCGGAAGATGCATCGT+GGG | 0.592355 | 3.1:+59885277 | MS.gene30769:CDS |
| GCTTGAGAGTCTAGAAAGAG+TGG | 0.594156 | 3.1:-59885356 | None:intergenic |
| AACTGTACAAGATGATGGTG+GGG | 0.603309 | 3.1:+59886462 | MS.gene30769:CDS |
| GCGCTACCAACATCCATGAC+AGG | 0.609183 | 3.1:-59884972 | None:intergenic |
| TCAGAGTCACCGAAGAACTT+GGG | 0.610880 | 3.1:-59886865 | None:intergenic |
| TGAATAATGTCGGTGGTGAG+GGG | 0.610912 | 3.1:+59884687 | None:intergenic |
| TGTCCGGTGGAAAATGGAGA+AGG | 0.612110 | 3.1:-59884879 | None:intergenic |
| CATAGTCCTCCTTTGTCCGG+TGG | 0.613263 | 3.1:-59884892 | None:intergenic |
| AAAATGCAAGGAGCGTGTAG+TGG | 0.619177 | 3.1:+59886839 | MS.gene30769:CDS |
| CCAACTGTACAAGATGATGG+TGG | 0.622834 | 3.1:+59886460 | MS.gene30769:CDS |
| GAGAATTCATAGCGGAACGA+GGG | 0.631290 | 3.1:-59885007 | None:intergenic |
| GCATTTACAGGTCAAAGGTG+TGG | 0.632082 | 3.1:+59887371 | MS.gene30769:intron |
| TGGAGAAGGAAATGGTGAGG+CGG | 0.634856 | 3.1:-59884865 | None:intergenic |
| AAGAGACTCTGGATTTGGAG+TGG | 0.639473 | 3.1:-59884931 | None:intergenic |
| GGAGAATTCATAGCGGAACG+AGG | 0.644818 | 3.1:-59885008 | None:intergenic |
| GGAACAAGAATTGGATGGCG+AGG | 0.646815 | 3.1:+59887392 | MS.gene30769:CDS |
| CCAAATCGGAAGATGCATCG+TGG | 0.660421 | 3.1:+59885276 | MS.gene30769:CDS |
| TTAGGAAGACGATTACGACT+AGG | 0.667897 | 3.1:+59884723 | MS.gene30769:CDS |
| AGAGTAGAAATCCATAATAG+CGG | 0.670498 | 3.1:-59885324 | None:intergenic |
| AAATGGAGAAGGAAATGGTG+AGG | 0.682646 | 3.1:-59884868 | None:intergenic |
| CAGATCGTGAATAATGTCGG+TGG | 0.693370 | 3.1:+59884680 | None:intergenic |
| GGTGTGGAACAAGAATTGGA+TGG | 0.704531 | 3.1:+59887387 | MS.gene30769:CDS |
| GCTGATGCATTATGTACCTG+AGG | 0.715793 | 3.1:+59886907 | MS.gene30769:CDS |
| TGGTTGCGAGGTTGAAACGA+CGG | 0.733707 | 3.1:-59884822 | None:intergenic |
| AGCGAGAGGAGAATTCATAG+CGG | 0.791927 | 3.1:-59885015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTTTTTTTATTTGTA+GGG | - | chr3.1:59886038-59886057 | None:intergenic | 10.0% |
| !!! | TTATGTTTTTTTTTATTTGT+AGG | - | chr3.1:59886039-59886058 | None:intergenic | 10.0% |
| !!! | TTTTATGAAATTTAAGTAAA+AGG | - | chr3.1:59885475-59885494 | None:intergenic | 10.0% |
| !! | ATACAAATTAAAGAAATGAA+AGG | - | chr3.1:59885180-59885199 | None:intergenic | 15.0% |
| !! | ATTTGATAAATATCATTAGT+TGG | - | chr3.1:59885713-59885732 | None:intergenic | 15.0% |
| !! | CTTGTAATTTAATTATTGTT+TGG | - | chr3.1:59885788-59885807 | None:intergenic | 15.0% |
| !! | GTTTCTCAATATAATATAAT+TGG | - | chr3.1:59887330-59887349 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTTTTATTTGTAG+GGG | - | chr3.1:59886037-59886056 | None:intergenic | 15.0% |
| !!! | ATTTGTAATATTCTGTTTTT+AGG | - | chr3.1:59885929-59885948 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAACAAAAAAATC+AGG | + | chr3.1:59886184-59886203 | MS.gene30769:intron | 15.0% |
| !!! | TTTTTTATTTTAATTGTTGC+AGG | + | chr3.1:59885212-59885231 | MS.gene30769:intron | 15.0% |
| !! | AAATATTAAAGAGAAACCTA+TGG | - | chr3.1:59886281-59886300 | None:intergenic | 20.0% |
| !! | ACATTATGAATATCATTAGT+TGG | - | chr3.1:59885764-59885783 | None:intergenic | 20.0% |
| !! | ATTGGACAATTCATATAAAA+TGG | - | chr3.1:59887312-59887331 | None:intergenic | 20.0% |
| !! | TAATGTTGTACATTATAGAA+TGG | + | chr3.1:59886757-59886776 | MS.gene30769:intron | 20.0% |
| !! | TAGAATGTTAGTAAATTAGT+GGG | - | chr3.1:59885899-59885918 | None:intergenic | 20.0% |
| !! | TGCAAATCTTATAAGTTAAT+TGG | - | chr3.1:59887122-59887141 | None:intergenic | 20.0% |
| !! | TTAGAATGTTAGTAAATTAG+TGG | - | chr3.1:59885900-59885919 | None:intergenic | 20.0% |
| !! | TTGATTACCGTAAATATAAA+TGG | - | chr3.1:59886983-59887002 | None:intergenic | 20.0% |
| !!! | TGTATTTGCTTTTTATATTG+TGG | + | chr3.1:59886784-59886803 | MS.gene30769:intron | 20.0% |
| !!! | TTATTTAAAGCAGCATTAAT+AGG | + | chr3.1:59887279-59887298 | MS.gene30769:intron | 20.0% |
| !!! | TTTTAACAAAAAAATCAGGA+GGG | + | chr3.1:59886188-59886207 | MS.gene30769:intron | 20.0% |
| !!! | TTTTTAACAAAAAAATCAGG+AGG | + | chr3.1:59886187-59886206 | MS.gene30769:intron | 20.0% |
| ! | AAACCCAAATAGAAAAAAAG+AGG | - | chr3.1:59886532-59886551 | None:intergenic | 25.0% |
| ! | AAATAGAATAAGAGATTGAG+AGG | + | chr3.1:59886061-59886080 | MS.gene30769:intron | 25.0% |
| ! | AACCCAAATAGAAAAAAAGA+GGG | - | chr3.1:59886531-59886550 | None:intergenic | 25.0% |
| ! | AGAGTATAGATTATTCATTG+AGG | - | chr3.1:59886566-59886585 | None:intergenic | 25.0% |
| ! | ATATAAATGGAAACAGCAAA+TGG | - | chr3.1:59886970-59886989 | None:intergenic | 25.0% |
| ! | GAGTTTATGATAGAACATTA+TGG | + | chr3.1:59885527-59885546 | MS.gene30769:intron | 25.0% |
| ! | TAATCAAATTGATTGGAAAC+TGG | + | chr3.1:59886996-59887015 | MS.gene30769:intron | 25.0% |
| ! | TTCAAGATGTCAAAACTAAA+TGG | + | chr3.1:59886360-59886379 | MS.gene30769:intron | 25.0% |
| ! | TTTAACAAAAAAATCAGGAG+GGG | + | chr3.1:59886189-59886208 | MS.gene30769:intron | 25.0% |
| ! | TTTACGGTAATCAAATTGAT+TGG | + | chr3.1:59886989-59887008 | MS.gene30769:intron | 25.0% |
| !! | AAATCAATTTTCACGATTGA+CGG | + | chr3.1:59885038-59885057 | MS.gene30769:CDS | 25.0% |
| !! | AAGTCTAAATACTTTTCCAT+AGG | + | chr3.1:59886262-59886281 | MS.gene30769:intron | 25.0% |
| !! | AAGTTTGCATTATCATTTTG+TGG | + | chr3.1:59886934-59886953 | MS.gene30769:intron | 25.0% |
| !! | GCTGTTTCCATTTATATTTA+CGG | + | chr3.1:59886973-59886992 | MS.gene30769:intron | 25.0% |
| !! | TTTAGTTTAGTCTCATTTCA+AGG | + | chr3.1:59885442-59885461 | MS.gene30769:intron | 25.0% |
| !!! | ATGGAAAAGTATTTAGACTT+GGG | - | chr3.1:59886262-59886281 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTGACATCTTGA+AGG | - | chr3.1:59886361-59886380 | None:intergenic | 25.0% |
| !!! | TATGGAAAAGTATTTAGACT+TGG | - | chr3.1:59886263-59886282 | None:intergenic | 25.0% |
| AATCAATCGTGTAAGACAAA+TGG | - | chr3.1:59887158-59887177 | None:intergenic | 30.0% | |
| AGAGTAGAAATCCATAATAG+CGG | - | chr3.1:59885327-59885346 | None:intergenic | 30.0% | |
| ATCGTCAAACTTAAAATGCA+AGG | + | chr3.1:59886827-59886846 | MS.gene30769:CDS | 30.0% | |
| ATTATGGATTTCTACTCTTC+CGG | + | chr3.1:59885329-59885348 | MS.gene30769:CDS | 30.0% | |
| ATTTGTAGGGGCAATTAATA+AGG | - | chr3.1:59886025-59886044 | None:intergenic | 30.0% | |
| CAAATAGAAAAAAAGAGGGA+GGG | - | chr3.1:59886527-59886546 | None:intergenic | 30.0% | |
| GCAATATCAACATAGAAATG+AGG | - | chr3.1:59885422-59885441 | None:intergenic | 30.0% | |
| TAGTCTCATTTCAAGGAATT+TGG | + | chr3.1:59885449-59885468 | MS.gene30769:intron | 30.0% | |
| ! | GATTTCGAGGGTATATTAAA+AGG | + | chr3.1:59887083-59887102 | MS.gene30769:intron | 30.0% |
| ! | TTTTGTCACTGTTACCAAAT+CGG | + | chr3.1:59885262-59885281 | MS.gene30769:CDS | 30.0% |
| !! | AGATTATTGTGATTAGTCTC+TGG | - | chr3.1:59884768-59884787 | None:intergenic | 30.0% |
| !! | CATTCTTAAGTTGATTTCGA+GGG | + | chr3.1:59887071-59887090 | MS.gene30769:intron | 30.0% |
| !!! | CTCCCTCTTTTTTTCTATTT+GGG | + | chr3.1:59886526-59886545 | MS.gene30769:intron | 30.0% |
| !!! | GTATGAGATTTTTCTAGCTT+AGG | + | chr3.1:59886332-59886351 | MS.gene30769:intron | 30.0% |
| AAACCTTATTCCACTAAGTG+GGG | - | chr3.1:59885576-59885595 | None:intergenic | 35.0% | |
| AACATAAGAGACTCTGGATT+TGG | - | chr3.1:59884939-59884958 | None:intergenic | 35.0% | |
| AATCAACTTAAGAATGCCAC+AGG | - | chr3.1:59887067-59887086 | None:intergenic | 35.0% | |
| ACAGAATAGAAAGACCAAGT+TGG | + | chr3.1:59886588-59886607 | MS.gene30769:intron | 35.0% | |
| AGATAAAGTTCAACCCAACT+TGG | - | chr3.1:59886605-59886624 | None:intergenic | 35.0% | |
| ATAATAGCGGCAAAGATTTC+AGG | - | chr3.1:59885314-59885333 | None:intergenic | 35.0% | |
| ATCATGAATTGCTGTGTCTT+TGG | - | chr3.1:59885390-59885409 | None:intergenic | 35.0% | |
| CAAACCTTATTCCACTAAGT+GGG | - | chr3.1:59885577-59885596 | None:intergenic | 35.0% | |
| CAGAATAGAAAGACCAAGTT+GGG | + | chr3.1:59886589-59886608 | MS.gene30769:intron | 35.0% | |
| CCAAATAGAAAAAAAGAGGG+AGG | - | chr3.1:59886528-59886547 | None:intergenic | 35.0% | |
| TACACGTAGTTCATTACAGA+AGG | - | chr3.1:59887039-59887058 | None:intergenic | 35.0% | |
| TAGTATGCACAATGACAGAT+AGG | - | chr3.1:59887214-59887233 | None:intergenic | 35.0% | |
| TCAAACCTTATTCCACTAAG+TGG | - | chr3.1:59885578-59885597 | None:intergenic | 35.0% | |
| TGAAACAGTTGCAATGATCA+AGG | + | chr3.1:59886414-59886433 | MS.gene30769:CDS | 35.0% | |
| TGAAATCTTTGCCGCTATTA+TGG | + | chr3.1:59885313-59885332 | MS.gene30769:CDS | 35.0% | |
| ! | GGAATTACTCGTGTTTTCTT+TGG | + | chr3.1:59885233-59885252 | MS.gene30769:intron | 35.0% |
| ! | GTGAAAATTGATTTAGCGAG+AGG | - | chr3.1:59885032-59885051 | None:intergenic | 35.0% |
| ! | TGCAATGATCAAGGAACTTT+TGG | + | chr3.1:59886423-59886442 | MS.gene30769:CDS | 35.0% |
| ! | TTTTAGTGACCCAAGTTCTT+GGG | + | chr3.1:59886308-59886327 | MS.gene30769:intron | 35.0% |
| !! | ACATTGAAGGAGTACTAACT+AGG | + | chr3.1:59885836-59885855 | MS.gene30769:intron | 35.0% |
| !! | GCATTCTTAAGTTGATTTCG+AGG | + | chr3.1:59887070-59887089 | MS.gene30769:intron | 35.0% |
| !! | TAATGCAAACTTGTTACCTC+AGG | - | chr3.1:59886926-59886945 | None:intergenic | 35.0% |
| !! | TGTGGTTTTCTCTAGAGATA+CGG | + | chr3.1:59886802-59886821 | MS.gene30769:intron | 35.0% |
| !!! | CCTCCCTCTTTTTTTCTATT+TGG | + | chr3.1:59886525-59886544 | MS.gene30769:intron | 35.0% |
| !!! | TAGTTTTGACATCTTGAAGG+TGG | - | chr3.1:59886358-59886377 | None:intergenic | 35.0% |
| AAAAGTCCTGACCTCAATTC+AGG | + | chr3.1:59885628-59885647 | MS.gene30769:intron | 40.0% | |
| AAACATAGTCCTCCTTTGTC+CGG | - | chr3.1:59884898-59884917 | None:intergenic | 40.0% | |
| AAATACAAAGCCTGACTGGT+GGG | + | chr3.1:59886105-59886124 | MS.gene30769:intron | 40.0% | |
| AAATGGAGAAGGAAATGGTG+AGG | - | chr3.1:59884871-59884890 | None:intergenic | 40.0% | |
| AAGGAAATACAAAGCCTGAC+TGG | + | chr3.1:59886101-59886120 | MS.gene30769:intron | 40.0% | |
| ACAAATTGTTCTCGTTGCCT+GGG | + | chr3.1:59884792-59884811 | MS.gene30769:CDS | 40.0% | |
| ACAAGTCTATCGTCACAAGT+AGG | + | chr3.1:59885803-59885822 | MS.gene30769:intron | 40.0% | |
| ACTTAAGAATGCCACAGGAA+AGG | - | chr3.1:59887062-59887081 | None:intergenic | 40.0% | |
| ATAGAAAAAAAGAGGGAGGG+AGG | - | chr3.1:59886524-59886543 | None:intergenic | 40.0% | |
| ATCTCATACTCCCAAGAACT+TGG | - | chr3.1:59886321-59886340 | None:intergenic | 40.0% | |
| ATGCTTACCTGTTTGCATAC+AGG | + | chr3.1:59886384-59886403 | MS.gene30769:intron | 40.0% | |
| CGTAGTTCATTACAGAAGGA+CGG | - | chr3.1:59887035-59887054 | None:intergenic | 40.0% | |
| GAATCATCCTGTATGCAAAC+AGG | - | chr3.1:59886394-59886413 | None:intergenic | 40.0% | |
| GAGTCTCTTATGTTTCATCC+TGG | + | chr3.1:59884945-59884964 | MS.gene30769:CDS | 40.0% | |
| GCAAGTTTCCAAGACAATGT+TGG | + | chr3.1:59886722-59886741 | MS.gene30769:intron | 40.0% | |
| GGATGAAACATAAGAGACTC+TGG | - | chr3.1:59884945-59884964 | None:intergenic | 40.0% | |
| GGCTGTAGATTTGAAAGGAA+AGG | + | chr3.1:59886082-59886101 | MS.gene30769:intron | 40.0% | |
| GGGATGGATGATTGATGAAT+GGG | + | chr3.1:59886125-59886144 | MS.gene30769:intron | 40.0% | |
| GTCGTAATCGTCTTCCTAAT+CGG | - | chr3.1:59884722-59884741 | None:intergenic | 40.0% | |
| GTGGAAAATGGAGAAGGAAA+TGG | - | chr3.1:59884876-59884895 | None:intergenic | 40.0% | |
| TACAAATTGTTCTCGTTGCC+TGG | + | chr3.1:59884791-59884810 | MS.gene30769:CDS | 40.0% | |
| TCTCATACTCCCAAGAACTT+GGG | - | chr3.1:59886320-59886339 | None:intergenic | 40.0% | |
| TGAGAGGCTGTAGATTTGAA+AGG | + | chr3.1:59886077-59886096 | MS.gene30769:intron | 40.0% | |
| TGCCTCGATTCAAAAACCAT+TGG | + | chr3.1:59886221-59886240 | MS.gene30769:intron | 40.0% | |
| TGGGATGGATGATTGATGAA+TGG | + | chr3.1:59886124-59886143 | MS.gene30769:intron | 40.0% | |
| TGTCAACACCAACATTGTCT+TGG | - | chr3.1:59886733-59886752 | None:intergenic | 40.0% | |
| TTAGACTTGGGAGATACAAG+AGG | - | chr3.1:59886250-59886269 | None:intergenic | 40.0% | |
| TTAGGAAGACGATTACGACT+AGG | + | chr3.1:59884723-59884742 | MS.gene30769:CDS | 40.0% | |
| TTGCTGCATTTACAGGTCAA+AGG | + | chr3.1:59887366-59887385 | MS.gene30769:intron | 40.0% | |
| ! | AACTGTACAAGATGATGGTG+GGG | + | chr3.1:59886462-59886481 | MS.gene30769:CDS | 40.0% |
| ! | AATGGTTTTTGAATCGAGGC+AGG | - | chr3.1:59886222-59886241 | None:intergenic | 40.0% |
| ! | AATTGCTGTGTCTTTGGAAG+CGG | - | chr3.1:59885384-59885403 | None:intergenic | 40.0% |
| ! | ATGGTTTTTGAATCGAGGCA+GGG | - | chr3.1:59886221-59886240 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGGAACAAGAAT+TGG | + | chr3.1:59887383-59887402 | MS.gene30769:CDS | 40.0% |
| ! | CAACTGTACAAGATGATGGT+GGG | + | chr3.1:59886461-59886480 | MS.gene30769:CDS | 40.0% |
| ! | CTTTTAGTGACCCAAGTTCT+TGG | + | chr3.1:59886307-59886326 | MS.gene30769:intron | 40.0% |
| ! | TGCCAATGGTTTTTGAATCG+AGG | - | chr3.1:59886226-59886245 | None:intergenic | 40.0% |
| ! | TTTCCTTCTCCATTTTCCAC+CGG | + | chr3.1:59884876-59884895 | MS.gene30769:CDS | 40.0% |
| !! | AGGAAGAGAAAAAGGCATTG+TGG | - | chr3.1:59884845-59884864 | None:intergenic | 40.0% |
| !! | GTGATTAGTCTCTGGTTTGA+GGG | - | chr3.1:59884760-59884779 | None:intergenic | 40.0% |
| !! | GTGGTTTTCTCTAGAGATAC+GGG | + | chr3.1:59886803-59886822 | MS.gene30769:intron | 40.0% |
| !! | TGGTTTTCTCTAGAGATACG+GGG | + | chr3.1:59886804-59886823 | MS.gene30769:intron | 40.0% |
| !! | TGTGATTAGTCTCTGGTTTG+AGG | - | chr3.1:59884761-59884780 | None:intergenic | 40.0% |
| AACTACGTGTACCTTTCCTG+TGG | + | chr3.1:59887048-59887067 | MS.gene30769:intron | 45.0% | |
| AAGAGACTCTGGATTTGGAG+TGG | - | chr3.1:59884934-59884953 | None:intergenic | 45.0% | |
| ACATCCATGACAGGTTTACC+AGG | - | chr3.1:59884966-59884985 | None:intergenic | 45.0% | |
| AGCGAGAGGAGAATTCATAG+CGG | - | chr3.1:59885018-59885037 | None:intergenic | 45.0% | |
| CAAATCGGAAGATGCATCGT+GGG | + | chr3.1:59885277-59885296 | MS.gene30769:CDS | 45.0% | |
| CCACCATCATCTTGTACAGT+TGG | - | chr3.1:59886463-59886482 | None:intergenic | 45.0% | |
| CGACCAACTGTACAAGATGA+TGG | + | chr3.1:59886457-59886476 | MS.gene30769:CDS | 45.0% | |
| CTTATTCCACTAAGTGGGGT+CGG | - | chr3.1:59885572-59885591 | None:intergenic | 45.0% | |
| GAAATACAAAGCCTGACTGG+TGG | + | chr3.1:59886104-59886123 | MS.gene30769:intron | 45.0% | |
| GAGATACAAGAGGATGCCAA+TGG | - | chr3.1:59886240-59886259 | None:intergenic | 45.0% | |
| GCATTTACAGGTCAAAGGTG+TGG | + | chr3.1:59887371-59887390 | MS.gene30769:intron | 45.0% | |
| GCTGATGCATTATGTACCTG+AGG | + | chr3.1:59886907-59886926 | MS.gene30769:CDS | 45.0% | |
| GCTTGAGAGTCTAGAAAGAG+TGG | - | chr3.1:59885359-59885378 | None:intergenic | 45.0% | |
| GGTAAACCTGTCATGGATGT+TGG | + | chr3.1:59884966-59884985 | MS.gene30769:CDS | 45.0% | |
| GGTGGGGACATTGTATATTG+TGG | + | chr3.1:59886478-59886497 | MS.gene30769:CDS | 45.0% | |
| GGTGTGGAACAAGAATTGGA+TGG | + | chr3.1:59887387-59887406 | MS.gene30769:CDS | 45.0% | |
| GTAAATGCAGCAAGCAGCAT+TGG | - | chr3.1:59887359-59887378 | None:intergenic | 45.0% | |
| GTCTAGAAAGAGTGGTTCAC+CGG | - | chr3.1:59885351-59885370 | None:intergenic | 45.0% | |
| TACAGAAGGACGGTAAGTTG+AGG | - | chr3.1:59887025-59887044 | None:intergenic | 45.0% | |
| TCAGAGTCACCGAAGAACTT+GGG | - | chr3.1:59886868-59886887 | None:intergenic | 45.0% | |
| TCATCCTGGTAAACCTGTCA+TGG | + | chr3.1:59884959-59884978 | MS.gene30769:CDS | 45.0% | |
| TGCACAATGACAGATAGGTC+TGG | - | chr3.1:59887209-59887228 | None:intergenic | 45.0% | |
| TTCAGAGTCACCGAAGAACT+TGG | - | chr3.1:59886869-59886888 | None:intergenic | 45.0% | |
| ! | AAAATGCAAGGAGCGTGTAG+TGG | + | chr3.1:59886839-59886858 | MS.gene30769:CDS | 45.0% |
| ! | AGGGGTAGTGTTTTCCGATT+AGG | + | chr3.1:59884705-59884724 | MS.gene30769:CDS | 45.0% |
| ! | ATGCTGCTTGCTGCATTTAC+AGG | + | chr3.1:59887359-59887378 | MS.gene30769:intron | 45.0% |
| ! | CCAACTGTACAAGATGATGG+TGG | + | chr3.1:59886460-59886479 | MS.gene30769:CDS | 45.0% |
| ! | GAGAATTCATAGCGGAACGA+GGG | - | chr3.1:59885010-59885029 | None:intergenic | 45.0% |
| ! | TGGTTTTTGAATCGAGGCAG+GGG | - | chr3.1:59886220-59886239 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTGTGGTTGCG+AGG | - | chr3.1:59884837-59884856 | None:intergenic | 45.0% |
| !! | GAAGAGGAAGCAGCTTTAAG+TGG | + | chr3.1:59887414-59887433 | MS.gene30769:CDS | 45.0% |
| !! | GATTTGGAGTGGACTGTGTT+TGG | - | chr3.1:59884923-59884942 | None:intergenic | 45.0% |
| AATCATCCATCCCACCAGTC+AGG | - | chr3.1:59886118-59886137 | None:intergenic | 50.0% | |
| AGAATTGGATGGCGAGGAAG+AGG | + | chr3.1:59887398-59887417 | MS.gene30769:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3.1:59885068-59885087 | None:intergenic | 50.0% | |
| AGGCAGCTGAGAGACATTGA+AGG | + | chr3.1:59885823-59885842 | MS.gene30769:intron | 50.0% | |
| CCAAATCGGAAGATGCATCG+TGG | + | chr3.1:59885276-59885295 | MS.gene30769:CDS | 50.0% | |
| CCACGATGCATCTTCCGATT+TGG | - | chr3.1:59885279-59885298 | None:intergenic | 50.0% | |
| CGACCCCACTTAGTGGAATA+AGG | + | chr3.1:59885570-59885589 | MS.gene30769:intron | 50.0% | |
| CTCCTTTGTCCGGTGGAAAA+TGG | - | chr3.1:59884888-59884907 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3.1:59885069-59885088 | None:intergenic | 50.0% | |
| GGAACAAGAATTGGATGGCG+AGG | + | chr3.1:59887392-59887411 | MS.gene30769:CDS | 50.0% | |
| GGAACGAGGGTTTGGGAAAT+CGG | - | chr3.1:59884997-59885016 | None:intergenic | 50.0% | |
| TAGTGGCTGCCCAAGTTCTT+CGG | + | chr3.1:59886856-59886875 | MS.gene30769:CDS | 50.0% | |
| TCCTGACCTCAATTCAGGTG+CGG | + | chr3.1:59885633-59885652 | MS.gene30769:intron | 50.0% | |
| TGAGGCGGAGGAAGAGAAAA+AGG | - | chr3.1:59884853-59884872 | None:intergenic | 50.0% | |
| TGGAGAAGGAAATGGTGAGG+CGG | - | chr3.1:59884868-59884887 | None:intergenic | 50.0% | |
| TGGTTGCGAGGTTGAAACGA+CGG | - | chr3.1:59884825-59884844 | None:intergenic | 50.0% | |
| TGTCCGGTGGAAAATGGAGA+AGG | - | chr3.1:59884882-59884901 | None:intergenic | 50.0% | |
| ! | CATTTTCCACCGGACAAAGG+AGG | + | chr3.1:59884886-59884905 | MS.gene30769:CDS | 50.0% |
| ! | CTCCATTTTCCACCGGACAA+AGG | + | chr3.1:59884883-59884902 | MS.gene30769:CDS | 50.0% |
| ! | GGAGAATTCATAGCGGAACG+AGG | - | chr3.1:59885011-59885030 | None:intergenic | 50.0% |
| ! | TCATAGCGGAACGAGGGTTT+GGG | - | chr3.1:59885004-59885023 | None:intergenic | 50.0% |
| ! | TTCATAGCGGAACGAGGGTT+TGG | - | chr3.1:59885005-59885024 | None:intergenic | 50.0% |
| !! | TCTTCGGTGACTCTGAAGTC+AGG | + | chr3.1:59886872-59886891 | MS.gene30769:CDS | 50.0% |
| ACAAAGCCTGACTGGTGGGA+TGG | + | chr3.1:59886109-59886128 | MS.gene30769:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3.1:59885564-59885583 | None:intergenic | 55.0% | |
| AGAAGGAAATGGTGAGGCGG+AGG | - | chr3.1:59884865-59884884 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.1:59885563-59885582 | MS.gene30769:intron | 55.0% | |
| CATAGTCCTCCTTTGTCCGG+TGG | - | chr3.1:59884895-59884914 | None:intergenic | 55.0% | |
| GCGCTACCAACATCCATGAC+AGG | - | chr3.1:59884975-59884994 | None:intergenic | 55.0% | |
| GGGAGGGAGGAGAGAACTTA+CGG | - | chr3.1:59886511-59886530 | None:intergenic | 55.0% | |
| TCCGCACCTGAATTGAGGTC+AGG | - | chr3.1:59885637-59885656 | None:intergenic | 55.0% | |
| AGCCAGGATTGGGGAACTGG+GGG | + | chr3.1:59885656-59885675 | MS.gene30769:intron | 60.0% | |
| ATCCCCCAGTTCCCCAATCC+TGG | - | chr3.1:59885661-59885680 | None:intergenic | 60.0% | |
| CTCAATTCAGGTGCGGAGCC+AGG | + | chr3.1:59885640-59885659 | MS.gene30769:intron | 60.0% | |
| CTGGCTCCGCACCTGAATTG+AGG | - | chr3.1:59885642-59885661 | None:intergenic | 60.0% | |
| GAGCCAGGATTGGGGAACTG+GGG | + | chr3.1:59885655-59885674 | MS.gene30769:intron | 60.0% | |
| GGAGCCAGGATTGGGGAACT+GGG | + | chr3.1:59885654-59885673 | MS.gene30769:intron | 60.0% | |
| TCAGGTGCGGAGCCAGGATT+GGG | + | chr3.1:59885646-59885665 | MS.gene30769:intron | 60.0% | |
| TTCAGGTGCGGAGCCAGGAT+TGG | + | chr3.1:59885645-59885664 | MS.gene30769:intron | 60.0% | |
| !! | GAAACGACGGTGTTGTGCCC+AGG | - | chr3.1:59884812-59884831 | None:intergenic | 60.0% |
| CAGGTGCGGAGCCAGGATTG+GGG | + | chr3.1:59885647-59885666 | MS.gene30769:intron | 65.0% | |
| CGGAGCCAGGATTGGGGAAC+TGG | + | chr3.1:59885653-59885672 | MS.gene30769:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 59884693 | 59887449 | 59884693 | ID=MS.gene30769 |
| chr3.1 | mRNA | 59884693 | 59887449 | 59884693 | ID=MS.gene30769.t1;Parent=MS.gene30769 |
| chr3.1 | exon | 59884693 | 59885059 | 59884693 | ID=MS.gene30769.t1.exon1;Parent=MS.gene30769.t1 |
| chr3.1 | CDS | 59884693 | 59885059 | 59884693 | ID=cds.MS.gene30769.t1;Parent=MS.gene30769.t1 |
| chr3.1 | exon | 59885234 | 59885409 | 59885234 | ID=MS.gene30769.t1.exon2;Parent=MS.gene30769.t1 |
| chr3.1 | CDS | 59885234 | 59885409 | 59885234 | ID=cds.MS.gene30769.t1;Parent=MS.gene30769.t1 |
| chr3.1 | exon | 59886406 | 59886509 | 59886406 | ID=MS.gene30769.t1.exon3;Parent=MS.gene30769.t1 |
| chr3.1 | CDS | 59886406 | 59886509 | 59886406 | ID=cds.MS.gene30769.t1;Parent=MS.gene30769.t1 |
| chr3.1 | exon | 59886817 | 59886928 | 59886817 | ID=MS.gene30769.t1.exon4;Parent=MS.gene30769.t1 |
| chr3.1 | CDS | 59886817 | 59886928 | 59886817 | ID=cds.MS.gene30769.t1;Parent=MS.gene30769.t1 |
| chr3.1 | exon | 59887381 | 59887449 | 59887381 | ID=MS.gene30769.t1.exon5;Parent=MS.gene30769.t1 |
| chr3.1 | CDS | 59887381 | 59887449 | 59887381 | ID=cds.MS.gene30769.t1;Parent=MS.gene30769.t1 |
| Gene Sequence |
| Protein sequence |
