Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31090.t1 | XP_003597439.1 | 87.5 | 448 | 53 | 2 | 1 | 448 | 1 | 445 | 2.80E-200 | 708 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31090.t1 | G7IUC5 | 87.5 | 448 | 53 | 2 | 1 | 448 | 1 | 445 | 2.0e-200 | 708.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31090.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene31090 | 0.804958 | 1.68E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene31090 | 0.808604 | 2.85E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene31090 | 0.808368 | 3.21E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene31090 | 0.803661 | 3.13E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene31090 | 0.805653 | 1.20E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene31090 | 0.800555 | 1.36E-48 | -1.69E-46 |
| MS.gene053006 | MS.gene31090 | 0.815522 | 8.86E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene31090 | 0.816256 | 6.07E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene31090 | 0.813036 | 3.14E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene31090 | 0.830137 | 3.48E-55 | -1.69E-46 |
| MS.gene058009 | MS.gene31090 | 0.816486 | 5.40E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene31090 | 0.803291 | 3.74E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene31090 | 0.812295 | 4.56E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene31090 | 0.805582 | 1.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31090.t1 | MTR_2g098080 | 95.982 | 448 | 15 | 2 | 1 | 448 | 1 | 445 | 0.0 | 886 |
| MS.gene31090.t1 | MTR_1g098920 | 47.500 | 360 | 162 | 8 | 85 | 419 | 92 | 449 | 2.62e-95 | 294 |
| MS.gene31090.t1 | MTR_6g035315 | 46.450 | 338 | 154 | 4 | 103 | 414 | 105 | 441 | 4.19e-82 | 263 |
| MS.gene31090.t1 | MTR_7g103390 | 46.748 | 246 | 106 | 7 | 4 | 243 | 3 | 229 | 7.94e-60 | 202 |
| MS.gene31090.t1 | MTR_1g061640 | 60.248 | 161 | 58 | 3 | 84 | 243 | 94 | 249 | 1.35e-55 | 192 |
| MS.gene31090.t1 | MTR_1g061640 | 41.441 | 111 | 61 | 1 | 310 | 416 | 371 | 481 | 3.75e-23 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31090.t1 | AT1G21200 | 39.787 | 470 | 205 | 12 | 1 | 419 | 1 | 443 | 1.06e-88 | 277 |
| MS.gene31090.t1 | AT1G21200 | 39.787 | 470 | 205 | 12 | 1 | 419 | 1 | 443 | 1.06e-88 | 277 |
| MS.gene31090.t1 | AT1G76870 | 42.651 | 347 | 167 | 10 | 84 | 419 | 60 | 385 | 1.08e-71 | 231 |
| MS.gene31090.t1 | AT1G76870 | 42.651 | 347 | 167 | 10 | 84 | 419 | 60 | 385 | 1.08e-71 | 231 |
| MS.gene31090.t1 | AT1G76870 | 42.651 | 347 | 167 | 10 | 84 | 419 | 60 | 385 | 1.08e-71 | 231 |
| MS.gene31090.t1 | AT3G10040 | 34.676 | 447 | 241 | 8 | 11 | 430 | 6 | 428 | 3.28e-66 | 218 |
Find 116 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATAATAATAATCAAAT+TGG | 0.250764 | 2.4:+5923955 | MS.gene31090:CDS |
| TCAATTATGAATGGTTCTTC+TGG | 0.281471 | 2.4:+5923799 | None:intergenic |
| GGTTCTTCTGGTTTGGGTGG+TGG | 0.300179 | 2.4:+5923811 | MS.gene31090:CDS |
| TATGAATGGTTCTTCTGGTT+TGG | 0.302937 | 2.4:+5923804 | None:intergenic |
| CAAGTCAAGATCATGACTAT+TGG | 0.311830 | 2.4:-5924547 | None:intergenic |
| ATGAATGGTTCTTCTGGTTT+GGG | 0.316755 | 2.4:+5923805 | MS.gene31090:CDS |
| TTCTCCCACGGAGACTTTGC+AGG | 0.318216 | 2.4:-5924819 | None:intergenic |
| GTTCTTCTGGTTTGGGTGGT+GGG | 0.328898 | 2.4:+5923812 | MS.gene31090:CDS |
| ACCAATGGAGGTAGGGTCTA+AGG | 0.337698 | 2.4:-5925078 | None:intergenic |
| GTGAGGAGGATGGCCACTTT+TGG | 0.369260 | 2.4:+5924739 | MS.gene31090:CDS |
| GGAGAAAAGAGAGTGGATTA+AGG | 0.381772 | 2.4:+5924836 | MS.gene31090:CDS |
| TATGAATATGATAACTGGTT+TGG | 0.383314 | 2.4:+5923927 | MS.gene31090:CDS |
| GGATAGGGAGCTGGAGAAGC+TGG | 0.386271 | 2.4:+5924959 | MS.gene31090:CDS |
| CAACATATGAATATGATAAC+TGG | 0.387205 | 2.4:+5923922 | MS.gene31090:CDS |
| TCCTGCATTGATGGATTCAA+TGG | 0.411710 | 2.4:+5924422 | MS.gene31090:CDS |
| ACCTTGAATCTCCATTTCAT+AGG | 0.413613 | 2.4:+5923866 | MS.gene31090:CDS |
| GAGGATGATGAGTTGGATAA+TGG | 0.423042 | 2.4:+5924651 | MS.gene31090:CDS |
| AAGTCAAGATCATGACTATT+GGG | 0.423237 | 2.4:-5924546 | None:intergenic |
| GAAGTTCAAAAGCCCTGGCT+TGG | 0.432989 | 2.4:-5924896 | None:intergenic |
| GAGCATGGTTACGGAGAAGA+TGG | 0.435266 | 2.4:+5924069 | MS.gene31090:CDS |
| GATGGTGTTAAGAAGAAATC+CGG | 0.439201 | 2.4:+5924231 | MS.gene31090:CDS |
| ATCCGGGGTGTCACAGAAGA+AGG | 0.448557 | 2.4:+5924248 | MS.gene31090:CDS |
| TGGTAGGGGAACTTGTTGTC+AGG | 0.449451 | 2.4:+5924389 | MS.gene31090:CDS |
| GAAGACGATGAGCATGGTTA+CGG | 0.454149 | 2.4:+5924060 | MS.gene31090:CDS |
| GTGAGTTGTGTTGGTGATGA+TGG | 0.455421 | 2.4:+5924192 | MS.gene31090:CDS |
| GAAGAAACTTGAGAGTGAAA+TGG | 0.458951 | 2.4:+5924779 | MS.gene31090:CDS |
| GGTTGAGAATCCTGCATTGA+TGG | 0.463782 | 2.4:+5924413 | MS.gene31090:CDS |
| GATACCGCAGCAAGAAGGAT+AGG | 0.473004 | 2.4:+5924943 | MS.gene31090:CDS |
| TGACTTGCATAGTTATTCGT+TGG | 0.479428 | 2.4:+5924563 | MS.gene31090:CDS |
| TTCAGAAACAGCGGTTTAAG+TGG | 0.489001 | 2.4:+5924916 | MS.gene31090:CDS |
| ACCATTGAATCCATCAATGC+AGG | 0.492133 | 2.4:-5924423 | None:intergenic |
| AATATTAATGCACGTGGTGA+TGG | 0.497668 | 2.4:+5924678 | MS.gene31090:CDS |
| GGTGATGGAGGGAGAATGGA+AGG | 0.501886 | 2.4:+5924693 | MS.gene31090:CDS |
| TCTAAGATAATGATAAGTAA+AGG | 0.502250 | 2.4:+5924288 | MS.gene31090:CDS |
| AATTGTGTTTCAATTATGAA+TGG | 0.507262 | 2.4:+5923790 | None:intergenic |
| AATGGTTAACTTGTCTGCTA+AGG | 0.514836 | 2.4:+5924440 | MS.gene31090:CDS |
| TTGTGGCCTCTTGATACCAA+TGG | 0.514883 | 2.4:-5925093 | None:intergenic |
| TCTCCCACGGAGACTTTGCA+GGG | 0.516340 | 2.4:-5924818 | None:intergenic |
| AATGGTTCTTCTGGTTTGGG+TGG | 0.516998 | 2.4:+5923808 | MS.gene31090:CDS |
| TCCTTAGACCCTACCTCCAT+TGG | 0.518261 | 2.4:+5925077 | MS.gene31090:CDS |
| GGTTGAATGAGATGCTTGGT+AGG | 0.519981 | 2.4:+5924373 | MS.gene31090:CDS |
| TGTTGTTGATGCCTATGAAA+TGG | 0.522650 | 2.4:-5923877 | None:intergenic |
| CATAGTTATTCGTTGGAACA+CGG | 0.524019 | 2.4:+5924570 | MS.gene31090:CDS |
| AAAATGTTGACTTCCAAGCC+AGG | 0.526284 | 2.4:+5924883 | MS.gene31090:CDS |
| CACTAGACTGCGGCCAAAAG+TGG | 0.527780 | 2.4:-5924752 | None:intergenic |
| TTTCTGAAGTTCAAAAGCCC+TGG | 0.531742 | 2.4:-5924901 | None:intergenic |
| GGTGATGATGGAACAATTAG+TGG | 0.532799 | 2.4:+5924204 | MS.gene31090:CDS |
| TGCAATTTGAAAATGAGCAC+AGG | 0.532921 | 2.4:+5925000 | MS.gene31090:CDS |
| GCCTATGAAATGGAGATTCA+AGG | 0.537095 | 2.4:-5923867 | None:intergenic |
| CAGCAAGAAGGATAGGGAGC+TGG | 0.539921 | 2.4:+5924950 | MS.gene31090:CDS |
| TGGGTATCCTTTGACCATTG+TGG | 0.541818 | 2.4:-5924527 | None:intergenic |
| ATTAATGCACGTGGTGATGG+AGG | 0.542789 | 2.4:+5924681 | MS.gene31090:CDS |
| TAACTTGTCTGCTAAGGCTA+AGG | 0.548373 | 2.4:+5924446 | MS.gene31090:CDS |
| TGAAGATAACAATGAAAGTG+AGG | 0.549731 | 2.4:+5924632 | MS.gene31090:CDS |
| ATAGCAGTGGTGAGTTGTGT+TGG | 0.551265 | 2.4:+5924183 | MS.gene31090:CDS |
| TAGGGGAACTTGTTGTCAGG+TGG | 0.556404 | 2.4:+5924392 | MS.gene31090:CDS |
| TGAAAGTGAGGATGATGAGT+TGG | 0.557152 | 2.4:+5924644 | MS.gene31090:CDS |
| AACTTGAGAGTGAAATGGCA+AGG | 0.557312 | 2.4:+5924784 | MS.gene31090:CDS |
| GTTGAATGAGATGCTTGGTA+GGG | 0.559093 | 2.4:+5924374 | MS.gene31090:CDS |
| TATCAAGAGGCCACAAGGGA+GGG | 0.560647 | 2.4:+5925100 | MS.gene31090:CDS |
| ATACCGCAGCAAGAAGGATA+GGG | 0.564239 | 2.4:+5924944 | MS.gene31090:CDS |
| AAAGCTGAAGCAGAGAGAGC+AGG | 0.565355 | 2.4:+5925028 | MS.gene31090:CDS |
| TTGATATGTTCCCTCCCTTG+TGG | 0.565958 | 2.4:-5925110 | None:intergenic |
| GTCCACTTCATTCTCTGCCA+AGG | 0.566514 | 2.4:-5924138 | None:intergenic |
| ACTTGAATAAGAGATATAAG+AGG | 0.568508 | 2.4:+5924352 | MS.gene31090:CDS |
| TGTCACAGAAGAAGGGTAAG+TGG | 0.569426 | 2.4:+5924256 | MS.gene31090:CDS |
| TCTTGATACCAATGGAGGTA+GGG | 0.573392 | 2.4:-5925085 | None:intergenic |
| GGAGCTGGAGAAGCTGGCGA+TGG | 0.574129 | 2.4:+5924965 | MS.gene31090:CDS |
| AAGAGGTTGAATGAGATGCT+TGG | 0.576189 | 2.4:+5924369 | MS.gene31090:CDS |
| AGCAGGAGGCAGAGTTCAGT+AGG | 0.578594 | 2.4:+5925045 | MS.gene31090:CDS |
| CAACAGACTCAGTTAGCTCA+TGG | 0.578956 | 2.4:+5923895 | MS.gene31090:CDS |
| ATGGTGTTAAGAAGAAATCC+GGG | 0.579854 | 2.4:+5924232 | MS.gene31090:CDS |
| CTCTTGATACCAATGGAGGT+AGG | 0.581041 | 2.4:-5925086 | None:intergenic |
| TTGAATGAGATGCTTGGTAG+GGG | 0.587060 | 2.4:+5924375 | MS.gene31090:CDS |
| TAGAAATAAATTAAGTGAGG+AGG | 0.587853 | 2.4:+5924725 | MS.gene31090:CDS |
| ACGTGGTGATGGAGGGAGAA+TGG | 0.588300 | 2.4:+5924689 | MS.gene31090:CDS |
| ACCCTTCTTCTGTGACACCC+CGG | 0.588573 | 2.4:-5924250 | None:intergenic |
| TGATAGAAATAAATTAAGTG+AGG | 0.588915 | 2.4:+5924722 | MS.gene31090:CDS |
| GTTAAGATACCGCAGCAAGA+AGG | 0.589509 | 2.4:+5924938 | MS.gene31090:CDS |
| TTAATGCACGTGGTGATGGA+GGG | 0.592885 | 2.4:+5924682 | MS.gene31090:CDS |
| AAATGTTGACTTCCAAGCCA+GGG | 0.593930 | 2.4:+5924884 | MS.gene31090:CDS |
| ATAGTTATTCGTTGGAACAC+GGG | 0.600371 | 2.4:+5924571 | MS.gene31090:CDS |
| TTATTCGTTGGAACACGGGA+AGG | 0.601197 | 2.4:+5924575 | MS.gene31090:CDS |
| GTGCATACCACAATGGTCAA+AGG | 0.603169 | 2.4:+5924520 | MS.gene31090:CDS |
| TGATGGAACAATTAGTGGTG+TGG | 0.604354 | 2.4:+5924209 | MS.gene31090:CDS |
| ACTTGAGAGTGAAATGGCAA+GGG | 0.606060 | 2.4:+5924785 | MS.gene31090:CDS |
| AGTGGACGGATAATGTGGTT+GGG | 0.610749 | 2.4:+5924154 | MS.gene31090:CDS |
| AAGTGGACGGATAATGTGGT+TGG | 0.613391 | 2.4:+5924153 | MS.gene31090:CDS |
| GTATCAAGAGGCCACAAGGG+AGG | 0.615865 | 2.4:+5925099 | MS.gene31090:CDS |
| AACTTATCCTCACACTGCTG+CGG | 0.618536 | 2.4:-5924324 | None:intergenic |
| CTACCTCCATTGGTATCAAG+AGG | 0.620308 | 2.4:+5925087 | MS.gene31090:CDS |
| AGCATGGTTACGGAGAAGAT+GGG | 0.623013 | 2.4:+5924070 | MS.gene31090:CDS |
| AGACCCTGCAAAGTCTCCGT+GGG | 0.624160 | 2.4:+5924815 | MS.gene31090:CDS |
| GGAACAATTAGTGGTGTGGA+TGG | 0.625621 | 2.4:+5924213 | MS.gene31090:CDS |
| AATAAATTAAGTGAGGAGGA+TGG | 0.626359 | 2.4:+5924729 | MS.gene31090:CDS |
| AATGAAGTGGACGGATAATG+TGG | 0.631463 | 2.4:+5924149 | MS.gene31090:CDS |
| AGGGAGGGAACATATCAACT+TGG | 0.631664 | 2.4:+5925115 | MS.gene31090:CDS |
| CTCCTTGGCAGAGAATGAAG+TGG | 0.631774 | 2.4:+5924136 | MS.gene31090:CDS |
| TGTGTCGCCGCAGCAGTGTG+AGG | 0.632288 | 2.4:+5924317 | MS.gene31090:CDS |
| GCTCCCTATCCTTCTTGCTG+CGG | 0.632768 | 2.4:-5924947 | None:intergenic |
| GGTTGGGCTTCTTATAGCAG+TGG | 0.632989 | 2.4:+5924170 | MS.gene31090:CDS |
| ATTGGTATCAAGAGGCCACA+AGG | 0.633070 | 2.4:+5925095 | MS.gene31090:CDS |
| TTCTTCATCCCACTAGACTG+CGG | 0.642211 | 2.4:-5924762 | None:intergenic |
| GCTGAAGCAGAGAGAGCAGG+AGG | 0.642379 | 2.4:+5925031 | MS.gene31090:CDS |
| ATGAGCGAAGACGATGAGCA+TGG | 0.644222 | 2.4:+5924054 | MS.gene31090:CDS |
| TTGGCAGAGAATGAAGTGGA+CGG | 0.645694 | 2.4:+5924140 | MS.gene31090:CDS |
| CTCCGTGGGAGAAAAGAGAG+TGG | 0.647688 | 2.4:+5924829 | MS.gene31090:CDS |
| AAGACCCTGCAAAGTCTCCG+TGG | 0.649124 | 2.4:+5924814 | MS.gene31090:CDS |
| TGGCCTCTTGATACCAATGG+AGG | 0.649145 | 2.4:-5925090 | None:intergenic |
| GTGATGGAGGGAGAATGGAA+GGG | 0.653559 | 2.4:+5924694 | MS.gene31090:CDS |
| TCCGGGGTGTCACAGAAGAA+GGG | 0.653871 | 2.4:+5924249 | MS.gene31090:CDS |
| TTGGTATCAAGAGGCCACAA+GGG | 0.674612 | 2.4:+5925096 | MS.gene31090:CDS |
| GAAATGTGTGCATACCACAA+TGG | 0.676978 | 2.4:+5924513 | MS.gene31090:CDS |
| GGAATTAATATTAATGCACG+TGG | 0.680730 | 2.4:+5924672 | MS.gene31090:CDS |
| TGGTGTTAAGAAGAAATCCG+GGG | 0.737936 | 2.4:+5924233 | MS.gene31090:CDS |
| AAGGACTCAAGAGATCACGA+TGG | 0.786747 | 2.4:+5924594 | MS.gene31090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGATAATAATAATCAAAT+TGG | + | chr2.4:5923955-5923974 | MS.gene31090:CDS | 15.0% |
| !! | TGATAGAAATAAATTAAGTG+AGG | + | chr2.4:5924722-5924741 | MS.gene31090:CDS | 20.0% |
| !!! | AAAAATTTGAATTTTGGTAG+AGG | + | chr2.4:5923991-5924010 | MS.gene31090:CDS | 20.0% |
| !!! | GAAGTGAAAAATTTGAATTT+TGG | + | chr2.4:5923985-5924004 | MS.gene31090:CDS | 20.0% |
| !!! | TCTAAGATAATGATAAGTAA+AGG | + | chr2.4:5924288-5924307 | MS.gene31090:CDS | 20.0% |
| ! | ACTTGAATAAGAGATATAAG+AGG | + | chr2.4:5924352-5924371 | MS.gene31090:CDS | 25.0% |
| ! | CAACATATGAATATGATAAC+TGG | + | chr2.4:5923922-5923941 | MS.gene31090:CDS | 25.0% |
| ! | TAGAAATAAATTAAGTGAGG+AGG | + | chr2.4:5924725-5924744 | MS.gene31090:CDS | 25.0% |
| ! | TATGAATATGATAACTGGTT+TGG | + | chr2.4:5923927-5923946 | MS.gene31090:CDS | 25.0% |
| AAGTCAAGATCATGACTATT+GGG | - | chr2.4:5924549-5924568 | None:intergenic | 30.0% | |
| AATAAATTAAGTGAGGAGGA+TGG | + | chr2.4:5924729-5924748 | MS.gene31090:CDS | 30.0% | |
| GGAATTAATATTAATGCACG+TGG | + | chr2.4:5924672-5924691 | MS.gene31090:CDS | 30.0% | |
| TGAAGATAACAATGAAAGTG+AGG | + | chr2.4:5924632-5924651 | MS.gene31090:CDS | 30.0% | |
| !! | TTGAATTTTGGTAGAGGAAA+GGG | + | chr2.4:5923997-5924016 | MS.gene31090:CDS | 30.0% |
| !! | TTTGAATTTTGGTAGAGGAA+AGG | + | chr2.4:5923996-5924015 | MS.gene31090:CDS | 30.0% |
| !!! | AATTGCGAGAATTTTTTCGA+TGG | + | chr2.4:5924093-5924112 | MS.gene31090:CDS | 30.0% |
| AATATTAATGCACGTGGTGA+TGG | + | chr2.4:5924678-5924697 | MS.gene31090:CDS | 35.0% | |
| ACCTTGAATCTCCATTTCAT+AGG | + | chr2.4:5923866-5923885 | MS.gene31090:CDS | 35.0% | |
| ATAGTTATTCGTTGGAACAC+GGG | + | chr2.4:5924571-5924590 | MS.gene31090:CDS | 35.0% | |
| CAAGTCAAGATCATGACTAT+TGG | - | chr2.4:5924550-5924569 | None:intergenic | 35.0% | |
| CATAGTTATTCGTTGGAACA+CGG | + | chr2.4:5924570-5924589 | MS.gene31090:CDS | 35.0% | |
| GAAGAAACTTGAGAGTGAAA+TGG | + | chr2.4:5924779-5924798 | MS.gene31090:CDS | 35.0% | |
| TGCAATTTGAAAATGAGCAC+AGG | + | chr2.4:5925000-5925019 | MS.gene31090:CDS | 35.0% | |
| TGTTGTTGATGCCTATGAAA+TGG | - | chr2.4:5923880-5923899 | None:intergenic | 35.0% | |
| ! | ATGGTGTTAAGAAGAAATCC+GGG | + | chr2.4:5924232-5924251 | MS.gene31090:CDS | 35.0% |
| ! | CTTTTGAACTTCAGAAACAG+CGG | + | chr2.4:5924907-5924926 | MS.gene31090:CDS | 35.0% |
| ! | GATGGTGTTAAGAAGAAATC+CGG | + | chr2.4:5924231-5924250 | MS.gene31090:CDS | 35.0% |
| ! | TGACTTGCATAGTTATTCGT+TGG | + | chr2.4:5924563-5924582 | MS.gene31090:CDS | 35.0% |
| !! | AATGGTTAACTTGTCTGCTA+AGG | + | chr2.4:5924440-5924459 | MS.gene31090:CDS | 35.0% |
| !! | ATGAATGGTTCTTCTGGTTT+GGG | + | chr2.4:5923805-5923824 | MS.gene31090:CDS | 35.0% |
| !!! | AATTTTTTCGATGGTGGGAA+GGG | + | chr2.4:5924102-5924121 | MS.gene31090:CDS | 35.0% |
| AACTTGAGAGTGAAATGGCA+AGG | + | chr2.4:5924784-5924803 | MS.gene31090:CDS | 40.0% | |
| AAGAGGTTGAATGAGATGCT+TGG | + | chr2.4:5924369-5924388 | MS.gene31090:CDS | 40.0% | |
| AATGAAGTGGACGGATAATG+TGG | + | chr2.4:5924149-5924168 | MS.gene31090:CDS | 40.0% | |
| ACCATTGAATCCATCAATGC+AGG | - | chr2.4:5924426-5924445 | None:intergenic | 40.0% | |
| ACTTGAGAGTGAAATGGCAA+GGG | + | chr2.4:5924785-5924804 | MS.gene31090:CDS | 40.0% | |
| GAAATGTGTGCATACCACAA+TGG | + | chr2.4:5924513-5924532 | MS.gene31090:CDS | 40.0% | |
| GCCTATGAAATGGAGATTCA+AGG | - | chr2.4:5923870-5923889 | None:intergenic | 40.0% | |
| GTTGAATGAGATGCTTGGTA+GGG | + | chr2.4:5924374-5924393 | MS.gene31090:CDS | 40.0% | |
| TCTTGATACCAATGGAGGTA+GGG | - | chr2.4:5925088-5925107 | None:intergenic | 40.0% | |
| TGAAAGTGAGGATGATGAGT+TGG | + | chr2.4:5924644-5924663 | MS.gene31090:CDS | 40.0% | |
| TGATGGAACAATTAGTGGTG+TGG | + | chr2.4:5924209-5924228 | MS.gene31090:CDS | 40.0% | |
| TTCAGAAACAGCGGTTTAAG+TGG | + | chr2.4:5924916-5924935 | MS.gene31090:CDS | 40.0% | |
| TTGAATGAGATGCTTGGTAG+GGG | + | chr2.4:5924375-5924394 | MS.gene31090:CDS | 40.0% | |
| ! | GAGGATGATGAGTTGGATAA+TGG | + | chr2.4:5924651-5924670 | MS.gene31090:CDS | 40.0% |
| ! | GGAAGTCAACATTTTGCTCT+TGG | - | chr2.4:5924878-5924897 | None:intergenic | 40.0% |
| ! | TAACTTGTCTGCTAAGGCTA+AGG | + | chr2.4:5924446-5924465 | MS.gene31090:CDS | 40.0% |
| ! | TGGTGTTAAGAAGAAATCCG+GGG | + | chr2.4:5924233-5924252 | MS.gene31090:CDS | 40.0% |
| !! | AAAATGTTGACTTCCAAGCC+AGG | + | chr2.4:5924883-5924902 | MS.gene31090:CDS | 40.0% |
| !! | AAATGTTGACTTCCAAGCCA+GGG | + | chr2.4:5924884-5924903 | MS.gene31090:CDS | 40.0% |
| !! | GGAGAAAAGAGAGTGGATTA+AGG | + | chr2.4:5924836-5924855 | MS.gene31090:CDS | 40.0% |
| !! | GGTGATGATGGAACAATTAG+TGG | + | chr2.4:5924204-5924223 | MS.gene31090:CDS | 40.0% |
| !! | TCCTGCATTGATGGATTCAA+TGG | + | chr2.4:5924422-5924441 | MS.gene31090:CDS | 40.0% |
| !! | TTTCTGAAGTTCAAAAGCCC+TGG | - | chr2.4:5924904-5924923 | None:intergenic | 40.0% |
| !!! | ATTTTTTCGATGGTGGGAAG+GGG | + | chr2.4:5924103-5924122 | MS.gene31090:CDS | 40.0% |
| !!! | GAATTTTTTCGATGGTGGGA+AGG | + | chr2.4:5924101-5924120 | MS.gene31090:CDS | 40.0% |
| !!! | GCGAGAATTTTTTCGATGGT+GGG | + | chr2.4:5924097-5924116 | MS.gene31090:CDS | 40.0% |
| !!! | TGCGAGAATTTTTTCGATGG+TGG | + | chr2.4:5924096-5924115 | MS.gene31090:CDS | 40.0% |
| AACTTATCCTCACACTGCTG+CGG | - | chr2.4:5924327-5924346 | None:intergenic | 45.0% | |
| AAGGACTCAAGAGATCACGA+TGG | + | chr2.4:5924594-5924613 | MS.gene31090:CDS | 45.0% | |
| AAGTGGACGGATAATGTGGT+TGG | + | chr2.4:5924153-5924172 | MS.gene31090:CDS | 45.0% | |
| AGCATGGTTACGGAGAAGAT+GGG | + | chr2.4:5924070-5924089 | MS.gene31090:CDS | 45.0% | |
| AGGGAGGGAACATATCAACT+TGG | + | chr2.4:5925115-5925134 | MS.gene31090:CDS | 45.0% | |
| AGTGGACGGATAATGTGGTT+GGG | + | chr2.4:5924154-5924173 | MS.gene31090:CDS | 45.0% | |
| ATACCGCAGCAAGAAGGATA+GGG | + | chr2.4:5924944-5924963 | MS.gene31090:CDS | 45.0% | |
| ATAGCAGTGGTGAGTTGTGT+TGG | + | chr2.4:5924183-5924202 | MS.gene31090:CDS | 45.0% | |
| ATTGGTATCAAGAGGCCACA+AGG | + | chr2.4:5925095-5925114 | MS.gene31090:CDS | 45.0% | |
| CAACAGACTCAGTTAGCTCA+TGG | + | chr2.4:5923895-5923914 | MS.gene31090:CDS | 45.0% | |
| CTACCTCCATTGGTATCAAG+AGG | + | chr2.4:5925087-5925106 | MS.gene31090:CDS | 45.0% | |
| CTCTTGATACCAATGGAGGT+AGG | - | chr2.4:5925089-5925108 | None:intergenic | 45.0% | |
| GAAGACGATGAGCATGGTTA+CGG | + | chr2.4:5924060-5924079 | MS.gene31090:CDS | 45.0% | |
| GGAACAATTAGTGGTGTGGA+TGG | + | chr2.4:5924213-5924232 | MS.gene31090:CDS | 45.0% | |
| GGTTGAATGAGATGCTTGGT+AGG | + | chr2.4:5924373-5924392 | MS.gene31090:CDS | 45.0% | |
| GGTTGAGAATCCTGCATTGA+TGG | + | chr2.4:5924413-5924432 | MS.gene31090:CDS | 45.0% | |
| GTGCATACCACAATGGTCAA+AGG | + | chr2.4:5924520-5924539 | MS.gene31090:CDS | 45.0% | |
| GTTAAGATACCGCAGCAAGA+AGG | + | chr2.4:5924938-5924957 | MS.gene31090:CDS | 45.0% | |
| TGGGTATCCTTTGACCATTG+TGG | - | chr2.4:5924530-5924549 | None:intergenic | 45.0% | |
| TGTCACAGAAGAAGGGTAAG+TGG | + | chr2.4:5924256-5924275 | MS.gene31090:CDS | 45.0% | |
| TTATTCGTTGGAACACGGGA+AGG | + | chr2.4:5924575-5924594 | MS.gene31090:CDS | 45.0% | |
| TTCTTCATCCCACTAGACTG+CGG | - | chr2.4:5924765-5924784 | None:intergenic | 45.0% | |
| TTGATATGTTCCCTCCCTTG+TGG | - | chr2.4:5925113-5925132 | None:intergenic | 45.0% | |
| TTGGCAGAGAATGAAGTGGA+CGG | + | chr2.4:5924140-5924159 | MS.gene31090:CDS | 45.0% | |
| TTGGTATCAAGAGGCCACAA+GGG | + | chr2.4:5925096-5925115 | MS.gene31090:CDS | 45.0% | |
| TTGTGGCCTCTTGATACCAA+TGG | - | chr2.4:5925096-5925115 | None:intergenic | 45.0% | |
| ! | ATCCACTCTCTTTTCTCCCA+CGG | - | chr2.4:5924834-5924853 | None:intergenic | 45.0% |
| ! | ATGGTGGGAAGGGGAAAAAA+GGG | + | chr2.4:5924112-5924131 | MS.gene31090:CDS | 45.0% |
| !! | AATGGTTCTTCTGGTTTGGG+TGG | + | chr2.4:5923808-5923827 | MS.gene31090:CDS | 45.0% |
| !! | ATTAATGCACGTGGTGATGG+AGG | + | chr2.4:5924681-5924700 | MS.gene31090:CDS | 45.0% |
| !! | GTGAGTTGTGTTGGTGATGA+TGG | + | chr2.4:5924192-5924211 | MS.gene31090:CDS | 45.0% |
| !! | TTAATGCACGTGGTGATGGA+GGG | + | chr2.4:5924682-5924701 | MS.gene31090:CDS | 45.0% |
| AAAGCTGAAGCAGAGAGAGC+AGG | + | chr2.4:5925028-5925047 | MS.gene31090:CDS | 50.0% | |
| AAGGTCCAAAATACCCCCAG+TGG | - | chr2.4:5923851-5923870 | None:intergenic | 50.0% | |
| ACCAATGGAGGTAGGGTCTA+AGG | - | chr2.4:5925081-5925100 | None:intergenic | 50.0% | |
| AGGGGAAAAAAGGGTCTCCT+TGG | + | chr2.4:5924121-5924140 | MS.gene31090:CDS | 50.0% | |
| AGGTCCAAAATACCCCCAGT+GGG | - | chr2.4:5923850-5923869 | None:intergenic | 50.0% | |
| ATGAGCGAAGACGATGAGCA+TGG | + | chr2.4:5924054-5924073 | MS.gene31090:CDS | 50.0% | |
| CTCCTTGGCAGAGAATGAAG+TGG | + | chr2.4:5924136-5924155 | MS.gene31090:CDS | 50.0% | |
| GAAGTTCAAAAGCCCTGGCT+TGG | - | chr2.4:5924899-5924918 | None:intergenic | 50.0% | |
| GAGCATGGTTACGGAGAAGA+TGG | + | chr2.4:5924069-5924088 | MS.gene31090:CDS | 50.0% | |
| GATACCGCAGCAAGAAGGAT+AGG | + | chr2.4:5924943-5924962 | MS.gene31090:CDS | 50.0% | |
| GGTTGGGCTTCTTATAGCAG+TGG | + | chr2.4:5924170-5924189 | MS.gene31090:CDS | 50.0% | |
| GTCCACTTCATTCTCTGCCA+AGG | - | chr2.4:5924141-5924160 | None:intergenic | 50.0% | |
| TATCAAGAGGCCACAAGGGA+GGG | + | chr2.4:5925100-5925119 | MS.gene31090:CDS | 50.0% | |
| TCCTTAGACCCTACCTCCAT+TGG | + | chr2.4:5925077-5925096 | MS.gene31090:CDS | 50.0% | |
| TGGCCTCTTGATACCAATGG+AGG | - | chr2.4:5925093-5925112 | None:intergenic | 50.0% | |
| ! | ACTTTTGGCCGCAGTCTAGT+GGG | + | chr2.4:5924754-5924773 | MS.gene31090:CDS | 50.0% |
| ! | GTGATGGAGGGAGAATGGAA+GGG | + | chr2.4:5924694-5924713 | MS.gene31090:CDS | 50.0% |
| !! | GATGGTGGGAAGGGGAAAAA+AGG | + | chr2.4:5924111-5924130 | MS.gene31090:CDS | 50.0% |
| !! | GTTCTTCTGGTTTGGGTGGT+GGG | + | chr2.4:5923812-5923831 | MS.gene31090:CDS | 50.0% |
| !! | TAGGGGAACTTGTTGTCAGG+TGG | + | chr2.4:5924392-5924411 | MS.gene31090:CDS | 50.0% |
| !! | TGGTAGGGGAACTTGTTGTC+AGG | + | chr2.4:5924389-5924408 | MS.gene31090:CDS | 50.0% |
| !!! | GGTTTTTGAGTGGTCCCACT+GGG | + | chr2.4:5923833-5923852 | MS.gene31090:CDS | 50.0% |
| !!! | GTTTTTGAGTGGTCCCACTG+GGG | + | chr2.4:5923834-5923853 | MS.gene31090:CDS | 50.0% |
| !!! | TTGGGTGGTGGGTTTTTGAG+TGG | + | chr2.4:5923823-5923842 | MS.gene31090:CDS | 50.0% |
| !!! | TTTTTGAGTGGTCCCACTGG+GGG | + | chr2.4:5923835-5923854 | MS.gene31090:CDS | 50.0% |
| AAGACCCTGCAAAGTCTCCG+TGG | + | chr2.4:5924814-5924833 | MS.gene31090:CDS | 55.0% | |
| ACCCTTCTTCTGTGACACCC+CGG | - | chr2.4:5924253-5924272 | None:intergenic | 55.0% | |
| AGACCCTGCAAAGTCTCCGT+GGG | + | chr2.4:5924815-5924834 | MS.gene31090:CDS | 55.0% | |
| AGCAGGAGGCAGAGTTCAGT+AGG | + | chr2.4:5925045-5925064 | MS.gene31090:CDS | 55.0% | |
| CACTAGACTGCGGCCAAAAG+TGG | - | chr2.4:5924755-5924774 | None:intergenic | 55.0% | |
| CAGCAAGAAGGATAGGGAGC+TGG | + | chr2.4:5924950-5924969 | MS.gene31090:CDS | 55.0% | |
| CTCCGTGGGAGAAAAGAGAG+TGG | + | chr2.4:5924829-5924848 | MS.gene31090:CDS | 55.0% | |
| GCTCCCTATCCTTCTTGCTG+CGG | - | chr2.4:5924950-5924969 | None:intergenic | 55.0% | |
| GTATCAAGAGGCCACAAGGG+AGG | + | chr2.4:5925099-5925118 | MS.gene31090:CDS | 55.0% | |
| TCTCCCACGGAGACTTTGCA+GGG | - | chr2.4:5924821-5924840 | None:intergenic | 55.0% | |
| TTCTCCCACGGAGACTTTGC+AGG | - | chr2.4:5924822-5924841 | None:intergenic | 55.0% | |
| ! | ATCCGGGGTGTCACAGAAGA+AGG | + | chr2.4:5924248-5924267 | MS.gene31090:CDS | 55.0% |
| ! | CACTTTTGGCCGCAGTCTAG+TGG | + | chr2.4:5924753-5924772 | MS.gene31090:CDS | 55.0% |
| ! | TCCGGGGTGTCACAGAAGAA+GGG | + | chr2.4:5924249-5924268 | MS.gene31090:CDS | 55.0% |
| !! | ACGTGGTGATGGAGGGAGAA+TGG | + | chr2.4:5924689-5924708 | MS.gene31090:CDS | 55.0% |
| !! | GGTGATGGAGGGAGAATGGA+AGG | + | chr2.4:5924693-5924712 | MS.gene31090:CDS | 55.0% |
| !! | GGTTCTTCTGGTTTGGGTGG+TGG | + | chr2.4:5923811-5923830 | MS.gene31090:CDS | 55.0% |
| !! | GTGAGGAGGATGGCCACTTT+TGG | + | chr2.4:5924739-5924758 | MS.gene31090:CDS | 55.0% |
| !!! | GGGTTTTTGAGTGGTCCCAC+TGG | + | chr2.4:5923832-5923851 | MS.gene31090:CDS | 55.0% |
| !!! | TGGTCCCACTGGGGGTATTT+TGG | + | chr2.4:5923843-5923862 | MS.gene31090:CDS | 55.0% |
| GCTGAAGCAGAGAGAGCAGG+AGG | + | chr2.4:5925031-5925050 | MS.gene31090:CDS | 60.0% | |
| GGATAGGGAGCTGGAGAAGC+TGG | + | chr2.4:5924959-5924978 | MS.gene31090:CDS | 60.0% | |
| GGAGCTGGAGAAGCTGGCGA+TGG | + | chr2.4:5924965-5924984 | MS.gene31090:CDS | 65.0% | |
| TGTGTCGCCGCAGCAGTGTG+AGG | + | chr2.4:5924317-5924336 | MS.gene31090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 5923805 | 5925151 | 5923805 | ID=MS.gene31090 |
| chr2.4 | mRNA | 5923805 | 5925151 | 5923805 | ID=MS.gene31090.t1;Parent=MS.gene31090 |
| chr2.4 | exon | 5923805 | 5925151 | 5923805 | ID=MS.gene31090.t1.exon1;Parent=MS.gene31090.t1 |
| chr2.4 | CDS | 5923805 | 5925151 | 5923805 | ID=cds.MS.gene31090.t1;Parent=MS.gene31090.t1 |
| Gene Sequence |
| Protein sequence |
