Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31479.t1 | XP_013465081.1 | 97.3 | 516 | 14 | 0 | 1 | 516 | 1 | 516 | 4.00E-291 | 1010 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31479.t1 | A0A072VBX4 | 97.3 | 516 | 14 | 0 | 1 | 516 | 1 | 516 | 2.9e-291 | 1010.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene31479 | 0.838231 | 3.25E-57 | -1.69E-46 |
| MS.gene050780 | MS.gene31479 | 0.805917 | 1.06E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene31479 | 0.811699 | 6.14E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene31479 | 0.801368 | 9.31E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene31479 | 0.807809 | 4.22E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene31479 | 0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene31479 | 0.855764 | 5.07E-62 | -1.69E-46 |
| MS.gene052896 | MS.gene31479 | 0.831099 | 2.02E-55 | -1.69E-46 |
| MS.gene053008 | MS.gene31479 | 0.847398 | 1.19E-59 | -1.69E-46 |
| MS.gene054657 | MS.gene31479 | 0.814807 | 1.28E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene31479 | 0.811698 | 6.15E-51 | -1.69E-46 |
| MS.gene055363 | MS.gene31479 | 0.804068 | 2.58E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene31479 | 0.835248 | 1.87E-56 | -1.69E-46 |
| MS.gene057026 | MS.gene31479 | 0.818078 | 2.37E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene31479 | 0.802687 | 4.98E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene31479 | 0.801773 | 7.69E-49 | -1.69E-46 |
| MS.gene059789 | MS.gene31479 | 0.810569 | 1.08E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene31479 | 0.822001 | 2.99E-53 | -1.69E-46 |
| MS.gene060683 | MS.gene31479 | 0.802165 | 6.39E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene31479 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene31479 | 0.829327 | 5.48E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31479.t1 | MTR_2g090285 | 97.287 | 516 | 14 | 0 | 1 | 516 | 1 | 516 | 0.0 | 1037 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31479.t1 | AT4G28260 | 42.188 | 512 | 263 | 12 | 16 | 503 | 13 | 515 | 4.03e-131 | 391 |
| MS.gene31479.t1 | AT4G28260 | 42.188 | 512 | 263 | 12 | 16 | 503 | 13 | 515 | 4.03e-131 | 391 |
Find 112 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATTGAGTTACGTGAAAA+TGG | 0.149151 | 2.4:-10507505 | MS.gene31479:CDS |
| ATTTGAAATGGGTGGGAAAT+TGG | 0.183618 | 2.4:-10507623 | None:intergenic |
| GCTGAGAAGGATGGCTCTTT+AGG | 0.220704 | 2.4:-10507052 | MS.gene31479:CDS |
| AATCAAAATGCTCGTCAAAA+AGG | 0.245244 | 2.4:-10506054 | MS.gene31479:CDS |
| CGACCCAAATCATAACTATA+TGG | 0.283138 | 2.4:+10506929 | None:intergenic |
| TGGGACAGAGAGCACAATTT+TGG | 0.288956 | 2.4:+10505922 | None:intergenic |
| GGAATGAAATTAGAAGAATT+TGG | 0.291528 | 2.4:-10507030 | MS.gene31479:CDS |
| CTGAGAAGGATGGCTCTTTA+GGG | 0.298151 | 2.4:-10507051 | MS.gene31479:CDS |
| GATGTGAAAGTTAGGAAAAT+TGG | 0.302708 | 2.4:-10507100 | MS.gene31479:CDS |
| TTTCCCATATAGTTATGATT+TGG | 0.310945 | 2.4:-10506933 | MS.gene31479:CDS |
| AAACTAACTTTGTTTCAAAC+AGG | 0.326871 | 2.4:-10506685 | MS.gene31479:CDS |
| AATATAAGACCATCACTAAA+AGG | 0.331956 | 2.4:+10507343 | None:intergenic |
| AAAGAACTGGAAACTGTAAA+TGG | 0.332933 | 2.4:-10507295 | MS.gene31479:CDS |
| TTCCCATATAGTTATGATTT+GGG | 0.338390 | 2.4:-10506932 | MS.gene31479:CDS |
| TTAGCTTCAACAATCTATTT+CGG | 0.343141 | 2.4:+10507269 | None:intergenic |
| TTGTTTCAAACAGGGCTATC+AGG | 0.349579 | 2.4:-10506676 | MS.gene31479:CDS |
| TTAGAAGAATTTGGTGTGAA+TGG | 0.362486 | 2.4:-10507021 | MS.gene31479:CDS |
| TGCTGCAGTCGGAATCCAAC+TGG | 0.364769 | 2.4:-10506533 | MS.gene31479:CDS |
| CAGAAGAGTCTCCACCTTTG+AGG | 0.384028 | 2.4:-10506757 | MS.gene31479:CDS |
| AAGCTATTGATGTGAAAGTT+AGG | 0.384527 | 2.4:-10507108 | MS.gene31479:CDS |
| GATTTGCAGAATTGCTCAAT+TGG | 0.387845 | 2.4:-10505338 | MS.gene31479:CDS |
| ATGGGTGGGAAATTGGAATT+GGG | 0.394636 | 2.4:-10507616 | MS.gene31479:CDS |
| CTGGAAGATGAGAGGGAAAG+TGG | 0.398975 | 2.4:-10506845 | MS.gene31479:CDS |
| TTCTGCCAGGTTTGCTGAGA+AGG | 0.410140 | 2.4:-10507065 | MS.gene31479:CDS |
| ATTTGAAGGGTAAGCTTCAT+AGG | 0.414458 | 2.4:-10507414 | MS.gene31479:CDS |
| TGTCAACAAAACATGATTCC+TGG | 0.416827 | 2.4:-10506602 | MS.gene31479:CDS |
| ATCCTCCTCTATGCTAGAAC+TGG | 0.417147 | 2.4:-10506864 | MS.gene31479:CDS |
| AATGGGTGGGAAATTGGAAT+TGG | 0.429413 | 2.4:-10507617 | MS.gene31479:CDS |
| TGTGTATCATCCCTCGCAAT+TGG | 0.430510 | 2.4:+10507178 | None:intergenic |
| AGAATTTGGTGTGAATGGTT+AGG | 0.432596 | 2.4:-10507016 | MS.gene31479:CDS |
| TCACTAAAAGGCCACGGATT+CGG | 0.440140 | 2.4:+10507355 | None:intergenic |
| ATCTGAGGGTGATAAAGAAC+TGG | 0.443270 | 2.4:-10507308 | MS.gene31479:CDS |
| TGTCCAGAGTGTCAAGGTGC+TGG | 0.444181 | 2.4:-10505973 | MS.gene31479:CDS |
| AAAGTTAGGAAAATTGGCTT+GGG | 0.446570 | 2.4:-10507094 | MS.gene31479:CDS |
| GGACAAAGTGCTTGAGGTTG+AGG | 0.448153 | 2.4:-10506906 | MS.gene31479:CDS |
| TTCTTTGATAATTCATCTGA+GGG | 0.449841 | 2.4:-10507322 | MS.gene31479:CDS |
| ATTTGCAGAATTGCTCAATT+GGG | 0.460348 | 2.4:-10505337 | MS.gene31479:CDS |
| GACCCAAATCATAACTATAT+GGG | 0.464644 | 2.4:+10506930 | None:intergenic |
| CATATAGTTATGATTTGGGT+CGG | 0.470784 | 2.4:-10506928 | MS.gene31479:CDS |
| AATTGGGTTTCATTTCCCTT+CGG | 0.472950 | 2.4:-10505321 | MS.gene31479:CDS |
| ACATTGAGTTACGTGAAAAT+GGG | 0.473761 | 2.4:-10507504 | MS.gene31479:CDS |
| AAAATTGTGCTCTCTGTCCC+AGG | 0.484115 | 2.4:-10505920 | MS.gene31479:intron |
| GAAAGTTAGGAAAATTGGCT+TGG | 0.484708 | 2.4:-10507095 | MS.gene31479:CDS |
| CAGGTTCTGGTAAAGAAGAC+AGG | 0.485349 | 2.4:-10506014 | MS.gene31479:CDS |
| GCCAGGTTTGCTGAGAAGGA+TGG | 0.490722 | 2.4:-10507061 | MS.gene31479:CDS |
| GCCATCCTTCTCAGCAAACC+TGG | 0.495465 | 2.4:+10507060 | None:intergenic |
| TTGGGGTCTTGTTCGAATGT+TGG | 0.498190 | 2.4:-10507598 | MS.gene31479:CDS |
| TCATTCTACAACGCAAAGAA+TGG | 0.501399 | 2.4:-10505376 | MS.gene31479:CDS |
| AGACCAGCACCTTGACACTC+TGG | 0.506407 | 2.4:+10505970 | None:intergenic |
| TCGAATAATCTGAGAGAGAA+AGG | 0.511103 | 2.4:-10507571 | MS.gene31479:CDS |
| TGATCAAGCGTCAATGTTGA+GGG | 0.516479 | 2.4:+10506728 | None:intergenic |
| AATTGTGCGAATGTTGCATA+GGG | 0.527136 | 2.4:-10505120 | None:intergenic |
| GCATTTCTGAATTTGAAGAC+TGG | 0.528693 | 2.4:-10506566 | MS.gene31479:CDS |
| ATATAGTTATGATTTGGGTC+GGG | 0.529170 | 2.4:-10506927 | MS.gene31479:CDS |
| GCTTGGGGAAGATTTCTGCC+AGG | 0.529306 | 2.4:-10507078 | MS.gene31479:CDS |
| CGACAGTTGTCGTGCCATTG+TGG | 0.532307 | 2.4:-10507233 | MS.gene31479:CDS |
| CTGAGACACATTAGAGCTCA+AGG | 0.536769 | 2.4:-10507535 | MS.gene31479:CDS |
| GTTCTAGCATAGAGGAGGAT+GGG | 0.540583 | 2.4:+10506867 | None:intergenic |
| GAATGATCTTTAATTTCAGT+CGG | 0.543899 | 2.4:+10505393 | None:intergenic |
| TTGATCAAGCGTCAATGTTG+AGG | 0.546595 | 2.4:+10506727 | None:intergenic |
| TCTGATCATTGCAGATGGGT+TGG | 0.549025 | 2.4:-10505950 | MS.gene31479:CDS |
| ATTCTTTGATAATTCATCTG+AGG | 0.549643 | 2.4:-10507323 | MS.gene31479:CDS |
| ATCTTCCAGTTCTAGCATAG+AGG | 0.549775 | 2.4:+10506859 | None:intergenic |
| TCACTTGCAATCTTCAAACA+TGG | 0.550872 | 2.4:+10507130 | None:intergenic |
| GCTGGTCTGATCATTGCAGA+TGG | 0.553045 | 2.4:-10505955 | MS.gene31479:CDS |
| AGTTCTAGCATAGAGGAGGA+TGG | 0.554745 | 2.4:+10506866 | None:intergenic |
| TGTTGTGTATGATCATTTGA+AGG | 0.555077 | 2.4:-10507428 | MS.gene31479:CDS |
| TTGTTGAAGCTAATTGAAAG+TGG | 0.555460 | 2.4:-10507259 | MS.gene31479:CDS |
| GGGTCGGGACAAAGTGCTTG+AGG | 0.558057 | 2.4:-10506912 | MS.gene31479:CDS |
| AGTTTGAAGAAGCTGACTGT+TGG | 0.562427 | 2.4:+10506703 | None:intergenic |
| GCTAGAACTGGAAGATGAGA+GGG | 0.564301 | 2.4:-10506852 | MS.gene31479:CDS |
| GAATTGTGCGAATGTTGCAT+AGG | 0.564678 | 2.4:-10505121 | None:intergenic |
| AACTAACTTTGTTTCAAACA+GGG | 0.568984 | 2.4:-10506684 | MS.gene31479:CDS |
| GCTGCAGTCGGAATCCAACT+GGG | 0.569349 | 2.4:-10506532 | MS.gene31479:CDS |
| AATGCTGCTACATCTTTACC+AGG | 0.569814 | 2.4:+10506584 | None:intergenic |
| ACAAGCTGATGGTTCTATGT+TGG | 0.573138 | 2.4:-10507158 | MS.gene31479:CDS |
| CTGGTCTGATCATTGCAGAT+GGG | 0.574511 | 2.4:-10505954 | MS.gene31479:CDS |
| GAGTCTCCACCTTTGAGGAA+TGG | 0.575459 | 2.4:-10506752 | MS.gene31479:CDS |
| TGCTAGAACTGGAAGATGAG+AGG | 0.578965 | 2.4:-10506853 | MS.gene31479:CDS |
| TTCAAACAGGGCTATCAGGA+AGG | 0.583800 | 2.4:-10506672 | MS.gene31479:CDS |
| GCTATCTCTTCAGATTCCGA+AGG | 0.584664 | 2.4:+10505305 | None:intergenic |
| AAAATCATGCTCTTGAACCT+CGG | 0.590936 | 2.4:+10506967 | None:intergenic |
| ATACGGCCTGTGTCATACAC+TGG | 0.593332 | 2.4:-10506119 | MS.gene31479:CDS |
| CTTTGATGAAGCCGAATCCG+TGG | 0.595795 | 2.4:-10507366 | MS.gene31479:CDS |
| AAAAGAACCATCGTCTGACG+TGG | 0.599417 | 2.4:-10506813 | MS.gene31479:CDS |
| GCTTTGCTTACAGGAAAATG+TGG | 0.604649 | 2.4:-10505199 | MS.gene31479:intron |
| GTTGTGTATGATCATTTGAA+GGG | 0.607449 | 2.4:-10507427 | MS.gene31479:CDS |
| GAAGAGTAGTTTGCTGCAGT+CGG | 0.607859 | 2.4:-10506544 | MS.gene31479:CDS |
| GTTGAGGGGCCATTCCTCAA+AGG | 0.614470 | 2.4:+10506743 | None:intergenic |
| AGGGATGATACACAAGCTGA+TGG | 0.625901 | 2.4:-10507169 | MS.gene31479:CDS |
| TTCCAGTTCTAGCATAGAGG+AGG | 0.629165 | 2.4:+10506862 | None:intergenic |
| CAGATGCTCAACCAATTGCG+AGG | 0.633041 | 2.4:-10507189 | MS.gene31479:CDS |
| CTCTTCATTAAAAGCCACAA+TGG | 0.633534 | 2.4:+10507219 | None:intergenic |
| AGATGCTCAACCAATTGCGA+GGG | 0.635364 | 2.4:-10507188 | MS.gene31479:CDS |
| AGACCATCACTAAAAGGCCA+CGG | 0.635447 | 2.4:+10507349 | None:intergenic |
| GAGGGGCCATTCCTCAAAGG+TGG | 0.640328 | 2.4:+10506746 | None:intergenic |
| TGGGTGGGAAATTGGAATTG+GGG | 0.642436 | 2.4:-10507615 | MS.gene31479:CDS |
| CTATCTCTTCAGATTCCGAA+GGG | 0.642532 | 2.4:+10505306 | None:intergenic |
| AGGTTCTGGTAAAGAAGACA+GGG | 0.650035 | 2.4:-10506013 | MS.gene31479:CDS |
| AAGATGTTGATGAAATCCGC+AGG | 0.650707 | 2.4:-10506790 | MS.gene31479:CDS |
| ATCTGAGAGAGAAAGGTGCG+AGG | 0.656790 | 2.4:-10507564 | MS.gene31479:CDS |
| CTTCTGAAGCATACTGCCTG+CGG | 0.661695 | 2.4:+10506774 | None:intergenic |
| ACATCTTCCACGTCAGACGA+TGG | 0.661723 | 2.4:+10506806 | None:intergenic |
| CTATCAGGAAGGCAATCAGA+CGG | 0.662170 | 2.4:-10506661 | MS.gene31479:CDS |
| GATCAAGCGTCAATGTTGAG+GGG | 0.668242 | 2.4:+10506729 | None:intergenic |
| GAGTATCCAGTGTATGACAC+AGG | 0.674182 | 2.4:+10506113 | None:intergenic |
| TCGTGCTGATGACGAGCATG+TGG | 0.675216 | 2.4:-10505151 | MS.gene31479:CDS |
| GGAATCTGAAGAGATAGCTG+AGG | 0.676818 | 2.4:-10505300 | MS.gene31479:intron |
| TGAGACACATTAGAGCTCAA+GGG | 0.685982 | 2.4:-10507534 | MS.gene31479:CDS |
| AAGTTAGGAAAATTGGCTTG+GGG | 0.691599 | 2.4:-10507093 | MS.gene31479:CDS |
| TAGTCAACAAGATGACGCCG+AGG | 0.718635 | 2.4:-10506984 | MS.gene31479:CDS |
| CTGCAGTCGGAATCCAACTG+GGG | 0.724399 | 2.4:-10506531 | MS.gene31479:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAGAAATCATTTTTT+TGG | - | chr2.4:10507100-10507119 | MS.gene31479:CDS | 10.0% |
| !! | TGTTAAAAAAATAGTTCATT+TGG | - | chr2.4:10507294-10507313 | MS.gene31479:CDS | 15.0% |
| !!! | CTGTTTTGATAAATTAAAAA+GGG | + | chr2.4:10506558-10506577 | None:intergenic | 15.0% |
| !!! | TCTGTTTTGATAAATTAAAA+AGG | + | chr2.4:10506559-10506578 | None:intergenic | 15.0% |
| !! | TCTTCTAACATATATTGTAA+TGG | - | chr2.4:10507517-10507536 | MS.gene31479:CDS | 20.0% |
| !! | TTATATTTGCATTTATATGC+AGG | - | chr2.4:10506581-10506600 | MS.gene31479:CDS | 20.0% |
| !! | TTTCATCTAAACATAGATAA+TGG | - | chr2.4:10507483-10507502 | MS.gene31479:CDS | 20.0% |
| !!! | AGCATTGATATCTTAATTTT+AGG | - | chr2.4:10507257-10507276 | MS.gene31479:CDS | 20.0% |
| !!! | CTCTAAAATGAAAAACTATT+AGG | - | chr2.4:10507010-10507029 | MS.gene31479:CDS | 20.0% |
| !!! | TCATTTTTAAGTGTTTGTTT+AGG | - | chr2.4:10506946-10506965 | MS.gene31479:CDS | 20.0% |
| !!! | TTTTTTCTTTTCCAAATACA+AGG | - | chr2.4:10507048-10507067 | MS.gene31479:CDS | 20.0% |
| ! | AATACATGTGTTCAAAACTT+CGG | - | chr2.4:10506348-10506367 | MS.gene31479:intron | 25.0% |
| ! | AATATAAGACCATCACTAAA+AGG | + | chr2.4:10505398-10505417 | None:intergenic | 25.0% |
| ! | AGAAATCCAAAGACAATATA+GGG | + | chr2.4:10507234-10507253 | None:intergenic | 25.0% |
| ! | ATAATATGAAGGATTAGGAA+AGG | + | chr2.4:10506865-10506884 | None:intergenic | 25.0% |
| ! | GGAATGAAATTAGAAGAATT+TGG | - | chr2.4:10505708-10505727 | MS.gene31479:intron | 25.0% |
| ! | TAGAAAATGCTGAAACAAAT+GGG | + | chr2.4:10506891-10506910 | None:intergenic | 25.0% |
| ! | TGATTTATAACTAGTTCATG+TGG | + | chr2.4:10507079-10507098 | None:intergenic | 25.0% |
| ! | TTAGAAAATGCTGAAACAAA+TGG | + | chr2.4:10506892-10506911 | None:intergenic | 25.0% |
| ! | TTAGCTTCAACAATCTATTT+CGG | + | chr2.4:10505472-10505491 | None:intergenic | 25.0% |
| ! | TTCCCATATAGTTATGATTT+GGG | - | chr2.4:10505806-10505825 | MS.gene31479:intron | 25.0% |
| ! | TTTCCCATATAGTTATGATT+TGG | - | chr2.4:10505805-10505824 | MS.gene31479:intron | 25.0% |
| ! | TTTCCTAATCCTTCATATTA+TGG | - | chr2.4:10506864-10506883 | MS.gene31479:CDS | 25.0% |
| !! | AAACTAACTTTGTTTCAAAC+AGG | - | chr2.4:10506053-10506072 | MS.gene31479:CDS | 25.0% |
| !! | AACTAACTTTGTTTCAAACA+GGG | - | chr2.4:10506054-10506073 | MS.gene31479:CDS | 25.0% |
| !! | ATTCTTTGATAATTCATCTG+AGG | - | chr2.4:10505415-10505434 | MS.gene31479:intron | 25.0% |
| !! | GAATGATCTTTAATTTCAGT+CGG | + | chr2.4:10507348-10507367 | None:intergenic | 25.0% |
| !! | TAGAACTGCAACATTTTTAT+TGG | + | chr2.4:10507567-10507586 | None:intergenic | 25.0% |
| !! | TTCTTTGATAATTCATCTGA+GGG | - | chr2.4:10505416-10505435 | MS.gene31479:intron | 25.0% |
| !!! | ACTAAAGACAGTTATTTTCT+TGG | + | chr2.4:10506505-10506524 | None:intergenic | 25.0% |
| AAAAAGATTGTAACAGGTTC+TGG | - | chr2.4:10506711-10506730 | MS.gene31479:CDS | 30.0% | |
| AAAGAACTGGAAACTGTAAA+TGG | - | chr2.4:10505443-10505462 | MS.gene31479:intron | 30.0% | |
| AAAGGGAAATGCTAACTTAA+TGG | + | chr2.4:10506541-10506560 | None:intergenic | 30.0% | |
| AAGCTATTGATGTGAAAGTT+AGG | - | chr2.4:10505630-10505649 | MS.gene31479:intron | 30.0% | |
| AATCAAAATGCTCGTCAAAA+AGG | - | chr2.4:10506684-10506703 | MS.gene31479:CDS | 30.0% | |
| ACATTGAGTTACGTGAAAAT+GGG | - | chr2.4:10505234-10505253 | MS.gene31479:intron | 30.0% | |
| AGAAAATGCTGAAACAAATG+GGG | + | chr2.4:10506890-10506909 | None:intergenic | 30.0% | |
| ATCAAAATGCTCGTCAAAAA+GGG | - | chr2.4:10506685-10506704 | MS.gene31479:CDS | 30.0% | |
| ATTTGCAGAATTGCTCAATT+GGG | - | chr2.4:10507401-10507420 | MS.gene31479:CDS | 30.0% | |
| GACCCAAATCATAACTATAT+GGG | + | chr2.4:10505811-10505830 | None:intergenic | 30.0% | |
| GAGAAATCCAAAGACAATAT+AGG | + | chr2.4:10507235-10507254 | None:intergenic | 30.0% | |
| GATGTGAAAGTTAGGAAAAT+TGG | - | chr2.4:10505638-10505657 | MS.gene31479:intron | 30.0% | |
| GTTGTGTATGATCATTTGAA+GGG | - | chr2.4:10505311-10505330 | MS.gene31479:CDS | 30.0% | |
| TAACTTAATGGCACAAGTTA+AGG | + | chr2.4:10506529-10506548 | None:intergenic | 30.0% | |
| TACATTGAGTTACGTGAAAA+TGG | - | chr2.4:10505233-10505252 | MS.gene31479:intron | 30.0% | |
| TGTTGTGTATGATCATTTGA+AGG | - | chr2.4:10505310-10505329 | MS.gene31479:CDS | 30.0% | |
| TTGTTGAAGCTAATTGAAAG+TGG | - | chr2.4:10505479-10505498 | MS.gene31479:intron | 30.0% | |
| ! | AAAGTTAGGAAAATTGGCTT+GGG | - | chr2.4:10505644-10505663 | MS.gene31479:intron | 30.0% |
| ! | ATATAGTTATGATTTGGGTC+GGG | - | chr2.4:10505811-10505830 | MS.gene31479:intron | 30.0% |
| ! | CATATAGTTATGATTTGGGT+CGG | - | chr2.4:10505810-10505829 | MS.gene31479:intron | 30.0% |
| ! | TTTCTTTTCCAAATACAAGG+AGG | - | chr2.4:10507051-10507070 | MS.gene31479:CDS | 30.0% |
| ! | TTTTCACGTAACTCAATGTA+AGG | + | chr2.4:10505233-10505252 | None:intergenic | 30.0% |
| !! | TTAGAAGAATTTGGTGTGAA+TGG | - | chr2.4:10505717-10505736 | MS.gene31479:intron | 30.0% |
| AAAATCATGCTCTTGAACCT+CGG | + | chr2.4:10505774-10505793 | None:intergenic | 35.0% | |
| AATTGGGTTTCATTTCCCTT+CGG | - | chr2.4:10507417-10507436 | MS.gene31479:CDS | 35.0% | |
| ATCCATGTAATGAACAAACC+TGG | + | chr2.4:10506839-10506858 | None:intergenic | 35.0% | |
| ATTTGAAGGGTAAGCTTCAT+AGG | - | chr2.4:10505324-10505343 | MS.gene31479:CDS | 35.0% | |
| CGACCCAAATCATAACTATA+TGG | + | chr2.4:10505812-10505831 | None:intergenic | 35.0% | |
| CTCTTCATTAAAAGCCACAA+TGG | + | chr2.4:10505522-10505541 | None:intergenic | 35.0% | |
| GAAAGTTAGGAAAATTGGCT+TGG | - | chr2.4:10505643-10505662 | MS.gene31479:intron | 35.0% | |
| GATTTGCAGAATTGCTCAAT+TGG | - | chr2.4:10507400-10507419 | MS.gene31479:CDS | 35.0% | |
| GCATTTCTGAATTTGAAGAC+TGG | - | chr2.4:10506172-10506191 | MS.gene31479:intron | 35.0% | |
| GGGAAGAAAAAGATTGTAAC+AGG | - | chr2.4:10506705-10506724 | MS.gene31479:CDS | 35.0% | |
| TCACTTGCAATCTTCAAACA+TGG | + | chr2.4:10505611-10505630 | None:intergenic | 35.0% | |
| TCATTCTACAACGCAAAGAA+TGG | - | chr2.4:10507362-10507381 | MS.gene31479:CDS | 35.0% | |
| TCCATGTAATGAACAAACCT+GGG | + | chr2.4:10506838-10506857 | None:intergenic | 35.0% | |
| TCGAATAATCTGAGAGAGAA+AGG | - | chr2.4:10505167-10505186 | MS.gene31479:CDS | 35.0% | |
| TGTCAACAAAACATGATTCC+TGG | - | chr2.4:10506136-10506155 | MS.gene31479:CDS | 35.0% | |
| ! | AAAGCACCCTATATTGTCTT+TGG | - | chr2.4:10507225-10507244 | MS.gene31479:CDS | 35.0% |
| ! | ATTGTAATGGCTTTGCTTAC+AGG | - | chr2.4:10507530-10507549 | MS.gene31479:CDS | 35.0% |
| ! | ATTTTTCATTGAGTCATGCC+AGG | - | chr2.4:10506386-10506405 | MS.gene31479:intron | 35.0% |
| ! | CATTGTGGCTTTTAATGAAG+AGG | - | chr2.4:10505520-10505539 | MS.gene31479:intron | 35.0% |
| ! | GGCTTTTCATGTGTTTCATA+CGG | - | chr2.4:10506602-10506621 | MS.gene31479:CDS | 35.0% |
| ! | TGAAATGATTTTACCCCAGT+TGG | + | chr2.4:10506223-10506242 | None:intergenic | 35.0% |
| ! | TTTTTCATTGAGTCATGCCA+GGG | - | chr2.4:10506387-10506406 | MS.gene31479:intron | 35.0% |
| !! | AAGTTAGGAAAATTGGCTTG+GGG | - | chr2.4:10505645-10505664 | MS.gene31479:intron | 35.0% |
| !! | AGAATTTGGTGTGAATGGTT+AGG | - | chr2.4:10505722-10505741 | MS.gene31479:intron | 35.0% |
| AATGCTGCTACATCTTTACC+AGG | + | chr2.4:10506157-10506176 | None:intergenic | 40.0% | |
| AGTTTGAAGAAGCTGACTGT+TGG | + | chr2.4:10506038-10506057 | None:intergenic | 40.0% | |
| ATCTGAGGGTGATAAAGAAC+TGG | - | chr2.4:10505430-10505449 | MS.gene31479:intron | 40.0% | |
| ATGGGTGGGAAATTGGAATT+GGG | - | chr2.4:10505122-10505141 | MS.gene31479:CDS | 40.0% | |
| ATGTGGTACCTCCTTGTATT+TGG | + | chr2.4:10507062-10507081 | None:intergenic | 40.0% | |
| CAAATGGGGCCATAATATGA+AGG | + | chr2.4:10506876-10506895 | None:intergenic | 40.0% | |
| CTATCTCTTCAGATTCCGAA+GGG | + | chr2.4:10507435-10507454 | None:intergenic | 40.0% | |
| GCTTTGCTTACAGGAAAATG+TGG | - | chr2.4:10507539-10507558 | MS.gene31479:CDS | 40.0% | |
| GGGCCATAATATGAAGGATT+AGG | + | chr2.4:10506870-10506889 | None:intergenic | 40.0% | |
| TGAGACACATTAGAGCTCAA+GGG | - | chr2.4:10505204-10505223 | MS.gene31479:intron | 40.0% | |
| TGATCAAGCGTCAATGTTGA+GGG | + | chr2.4:10506013-10506032 | None:intergenic | 40.0% | |
| TTGATCAAGCGTCAATGTTG+AGG | + | chr2.4:10506014-10506033 | None:intergenic | 40.0% | |
| TTGTTTCAAACAGGGCTATC+AGG | - | chr2.4:10506062-10506081 | MS.gene31479:CDS | 40.0% | |
| ! | AAGATGTTGATGAAATCCGC+AGG | - | chr2.4:10505948-10505967 | MS.gene31479:CDS | 40.0% |
| ! | ACAAGCTGATGGTTCTATGT+TGG | - | chr2.4:10505580-10505599 | MS.gene31479:intron | 40.0% |
| ! | AGGTTCTGGTAAAGAAGACA+GGG | - | chr2.4:10506725-10506744 | MS.gene31479:CDS | 40.0% |
| ! | ATCTTCCAGTTCTAGCATAG+AGG | + | chr2.4:10505882-10505901 | None:intergenic | 40.0% |
| ! | TCCCAGGTTTGTTCATTACA+TGG | - | chr2.4:10506834-10506853 | MS.gene31479:CDS | 40.0% |
| ! | TCTGTGTTTTGTGTCTTGCT+CGG | - | chr2.4:10505273-10505292 | MS.gene31479:intron | 40.0% |
| !! | GGTTCAAGAGCATGATTTTG+CGG | - | chr2.4:10505775-10505794 | MS.gene31479:intron | 40.0% |
| AAAAGAACCATCGTCTGACG+TGG | - | chr2.4:10505925-10505944 | MS.gene31479:CDS | 45.0% | |
| AAAATTGTGCTCTCTGTCCC+AGG | - | chr2.4:10506818-10506837 | MS.gene31479:CDS | 45.0% | |
| AGACCATCACTAAAAGGCCA+CGG | + | chr2.4:10505392-10505411 | None:intergenic | 45.0% | |
| AGATGCTCAACCAATTGCGA+GGG | - | chr2.4:10505550-10505569 | MS.gene31479:intron | 45.0% | |
| AGGGATGATACACAAGCTGA+TGG | - | chr2.4:10505569-10505588 | MS.gene31479:intron | 45.0% | |
| ATCCTCCTCTATGCTAGAAC+TGG | - | chr2.4:10505874-10505893 | MS.gene31479:intron | 45.0% | |
| CTATCAGGAAGGCAATCAGA+CGG | - | chr2.4:10506077-10506096 | MS.gene31479:CDS | 45.0% | |
| CTGAGAAGGATGGCTCTTTA+GGG | - | chr2.4:10505687-10505706 | MS.gene31479:intron | 45.0% | |
| CTGAGACACATTAGAGCTCA+AGG | - | chr2.4:10505203-10505222 | MS.gene31479:intron | 45.0% | |
| CTGGTCTGATCATTGCAGAT+GGG | - | chr2.4:10506784-10506803 | MS.gene31479:CDS | 45.0% | |
| GAGTATCCAGTGTATGACAC+AGG | + | chr2.4:10506628-10506647 | None:intergenic | 45.0% | |
| GATCAAGCGTCAATGTTGAG+GGG | + | chr2.4:10506012-10506031 | None:intergenic | 45.0% | |
| GCTAGAACTGGAAGATGAGA+GGG | - | chr2.4:10505886-10505905 | MS.gene31479:intron | 45.0% | |
| GCTATCTCTTCAGATTCCGA+AGG | + | chr2.4:10507436-10507455 | None:intergenic | 45.0% | |
| GGAATCTGAAGAGATAGCTG+AGG | - | chr2.4:10507438-10507457 | MS.gene31479:CDS | 45.0% | |
| GTTCTAGCATAGAGGAGGAT+GGG | + | chr2.4:10505874-10505893 | None:intergenic | 45.0% | |
| TCACTAAAAGGCCACGGATT+CGG | + | chr2.4:10505386-10505405 | None:intergenic | 45.0% | |
| TCTGATCATTGCAGATGGGT+TGG | - | chr2.4:10506788-10506807 | MS.gene31479:CDS | 45.0% | |
| TGCTAGAACTGGAAGATGAG+AGG | - | chr2.4:10505885-10505904 | MS.gene31479:intron | 45.0% | |
| TGGGTGGGAAATTGGAATTG+GGG | - | chr2.4:10505123-10505142 | MS.gene31479:CDS | 45.0% | |
| TGTGTATCATCCCTCGCAAT+TGG | + | chr2.4:10505563-10505582 | None:intergenic | 45.0% | |
| TTCAAACAGGGCTATCAGGA+AGG | - | chr2.4:10506066-10506085 | MS.gene31479:CDS | 45.0% | |
| ! | AATCCGTGGCCTTTTAGTGA+TGG | - | chr2.4:10505386-10505405 | MS.gene31479:CDS | 45.0% |
| ! | AGTTCTAGCATAGAGGAGGA+TGG | + | chr2.4:10505875-10505894 | None:intergenic | 45.0% |
| ! | CAGGTTCTGGTAAAGAAGAC+AGG | - | chr2.4:10506724-10506743 | MS.gene31479:CDS | 45.0% |
| ! | TTCCAGTTCTAGCATAGAGG+AGG | + | chr2.4:10505879-10505898 | None:intergenic | 45.0% |
| !! | GAAGAGTAGTTTGCTGCAGT+CGG | - | chr2.4:10506194-10506213 | MS.gene31479:intron | 45.0% |
| !! | GTTTTCTGTCCAGAGTGTCA+AGG | - | chr2.4:10506759-10506778 | MS.gene31479:CDS | 45.0% |
| !! | TACTTCCTTAACTTGTGCCC+TGG | + | chr2.4:10506407-10506426 | None:intergenic | 45.0% |
| !! | TGGGACAGAGAGCACAATTT+TGG | + | chr2.4:10506819-10506838 | None:intergenic | 45.0% |
| !! | TTGGGGTCTTGTTCGAATGT+TGG | - | chr2.4:10505140-10505159 | MS.gene31479:CDS | 45.0% |
| ACATCTTCCACGTCAGACGA+TGG | + | chr2.4:10505935-10505954 | None:intergenic | 50.0% | |
| ATACGGCCTGTGTCATACAC+TGG | - | chr2.4:10506619-10506638 | MS.gene31479:CDS | 50.0% | |
| CAGAAGAGTCTCCACCTTTG+AGG | - | chr2.4:10505981-10506000 | MS.gene31479:CDS | 50.0% | |
| CAGATGCTCAACCAATTGCG+AGG | - | chr2.4:10505549-10505568 | MS.gene31479:intron | 50.0% | |
| CTGGAAGATGAGAGGGAAAG+TGG | - | chr2.4:10505893-10505912 | MS.gene31479:intron | 50.0% | |
| CTTTGATGAAGCCGAATCCG+TGG | - | chr2.4:10505372-10505391 | MS.gene31479:CDS | 50.0% | |
| GCTGAGAAGGATGGCTCTTT+AGG | - | chr2.4:10505686-10505705 | MS.gene31479:intron | 50.0% | |
| TAGTCAACAAGATGACGCCG+AGG | - | chr2.4:10505754-10505773 | MS.gene31479:intron | 50.0% | |
| TCATGCCAGGGCACAAGTTA+AGG | - | chr2.4:10506399-10506418 | MS.gene31479:intron | 50.0% | |
| ! | ATCTGAGAGAGAAAGGTGCG+AGG | - | chr2.4:10505174-10505193 | MS.gene31479:CDS | 50.0% |
| ! | GAGTCTCCACCTTTGAGGAA+TGG | - | chr2.4:10505986-10506005 | MS.gene31479:CDS | 50.0% |
| ! | GCTGGTCTGATCATTGCAGA+TGG | - | chr2.4:10506783-10506802 | MS.gene31479:CDS | 50.0% |
| ! | GGACAAAGTGCTTGAGGTTG+AGG | - | chr2.4:10505832-10505851 | MS.gene31479:intron | 50.0% |
| !! | CTTCTGAAGCATACTGCCTG+CGG | + | chr2.4:10505967-10505986 | None:intergenic | 50.0% |
| !! | TTCTGCCAGGTTTGCTGAGA+AGG | - | chr2.4:10505673-10505692 | MS.gene31479:intron | 50.0% |
| AGACCAGCACCTTGACACTC+TGG | + | chr2.4:10506771-10506790 | None:intergenic | 55.0% | |
| CTGCAGTCGGAATCCAACTG+GGG | - | chr2.4:10506207-10506226 | MS.gene31479:intron | 55.0% | |
| GCCATCCTTCTCAGCAAACC+TGG | + | chr2.4:10505681-10505700 | None:intergenic | 55.0% | |
| GCTGCAGTCGGAATCCAACT+GGG | - | chr2.4:10506206-10506225 | MS.gene31479:intron | 55.0% | |
| GCTTGGGGAAGATTTCTGCC+AGG | - | chr2.4:10505660-10505679 | MS.gene31479:intron | 55.0% | |
| GTTGAGGGGCCATTCCTCAA+AGG | + | chr2.4:10505998-10506017 | None:intergenic | 55.0% | |
| TGCTGCAGTCGGAATCCAAC+TGG | - | chr2.4:10506205-10506224 | MS.gene31479:intron | 55.0% | |
| ! | CGACAGTTGTCGTGCCATTG+TGG | - | chr2.4:10505505-10505524 | MS.gene31479:intron | 55.0% |
| ! | TCGTGCTGATGACGAGCATG+TGG | - | chr2.4:10507587-10507606 | MS.gene31479:CDS | 55.0% |
| ! | TGTCCAGAGTGTCAAGGTGC+TGG | - | chr2.4:10506765-10506784 | MS.gene31479:CDS | 55.0% |
| !! | GCCAGGTTTGCTGAGAAGGA+TGG | - | chr2.4:10505677-10505696 | MS.gene31479:intron | 55.0% |
| GAGGGGCCATTCCTCAAAGG+TGG | + | chr2.4:10505995-10506014 | None:intergenic | 60.0% | |
| ! | GGGTCGGGACAAAGTGCTTG+AGG | - | chr2.4:10505826-10505845 | MS.gene31479:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 10505122 | 10507638 | 10505122 | ID=MS.gene31479 |
| chr2.4 | mRNA | 10505122 | 10507638 | 10505122 | ID=MS.gene31479.t1;Parent=MS.gene31479 |
| chr2.4 | exon | 10506532 | 10507638 | 10506532 | ID=MS.gene31479.t1.exon1;Parent=MS.gene31479.t1 |
| chr2.4 | CDS | 10506532 | 10507638 | 10506532 | ID=cds.MS.gene31479.t1;Parent=MS.gene31479.t1 |
| chr2.4 | exon | 10505921 | 10506157 | 10505921 | ID=MS.gene31479.t1.exon2;Parent=MS.gene31479.t1 |
| chr2.4 | CDS | 10505921 | 10506157 | 10505921 | ID=cds.MS.gene31479.t1;Parent=MS.gene31479.t1 |
| chr2.4 | exon | 10505301 | 10505420 | 10505301 | ID=MS.gene31479.t1.exon3;Parent=MS.gene31479.t1 |
| chr2.4 | CDS | 10505301 | 10505420 | 10505301 | ID=cds.MS.gene31479.t1;Parent=MS.gene31479.t1 |
| chr2.4 | exon | 10505122 | 10505208 | 10505122 | ID=MS.gene31479.t1.exon4;Parent=MS.gene31479.t1 |
| chr2.4 | CDS | 10505122 | 10505208 | 10505122 | ID=cds.MS.gene31479.t1;Parent=MS.gene31479.t1 |
| Gene Sequence |
| Protein sequence |
