Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31803.t1 | KEH40400.1 | 97.8 | 320 | 7 | 0 | 1 | 320 | 1 | 320 | 1.00E-175 | 625.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31803.t1 | A2Z3C4 | 64.5 | 242 | 84 | 2 | 78 | 317 | 80 | 321 | 2.9e-83 | 310.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31803.t1 | A0A072VQL3 | 97.8 | 320 | 7 | 0 | 1 | 320 | 1 | 320 | 7.3e-176 | 625.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene31803 | 0.809191 | 2.14E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene31803 | 0.829896 | 3.98E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene31803 | 0.810264 | 1.26E-50 | -1.69E-46 |
| MS.gene05150 | MS.gene31803 | 0.803458 | 3.45E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene31803 | 0.839698 | 1.36E-57 | -1.69E-46 |
| MS.gene051744 | MS.gene31803 | 0.800854 | 1.19E-48 | -1.69E-46 |
| MS.gene052628 | MS.gene31803 | 0.800351 | 1.50E-48 | -1.69E-46 |
| MS.gene053144 | MS.gene31803 | 0.827227 | 1.76E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene31803 | 0.840338 | 9.24E-58 | -1.69E-46 |
| MS.gene054801 | MS.gene31803 | 0.809097 | 2.24E-50 | -1.69E-46 |
| MS.gene055144 | MS.gene31803 | 0.819044 | 1.43E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene31803 | 0.805092 | 1.58E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene31803 | 0.804263 | 2.35E-49 | -1.69E-46 |
| MS.gene056169 | MS.gene31803 | 0.803686 | 3.10E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene31803 | 0.813309 | 2.73E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene31803 | 0.814877 | 1.23E-51 | -1.69E-46 |
| MS.gene058339 | MS.gene31803 | 0.829044 | 6.42E-55 | -1.69E-46 |
| MS.gene05847 | MS.gene31803 | 0.804116 | 2.52E-49 | -1.69E-46 |
| MS.gene058909 | MS.gene31803 | 0.833834 | 4.25E-56 | -1.69E-46 |
| MS.gene058912 | MS.gene31803 | 0.829392 | 5.28E-55 | -1.69E-46 |
| MS.gene05894 | MS.gene31803 | 0.824791 | 6.66E-54 | -1.69E-46 |
| MS.gene059015 | MS.gene31803 | 0.802739 | 4.86E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene31803 | 0.804235 | 2.38E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31803.t1 | MTR_1g028320 | 97.812 | 320 | 7 | 0 | 1 | 320 | 1 | 320 | 0.0 | 640 |
| MS.gene31803.t1 | MTR_1g028330 | 62.539 | 323 | 112 | 6 | 1 | 319 | 1 | 318 | 1.13e-134 | 385 |
| MS.gene31803.t1 | MTR_3g092110 | 63.986 | 286 | 92 | 5 | 37 | 317 | 30 | 309 | 1.93e-121 | 351 |
| MS.gene31803.t1 | MTR_5g045000 | 47.619 | 252 | 129 | 3 | 69 | 317 | 8 | 259 | 9.58e-78 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31803.t1 | AT5G24400 | 63.454 | 249 | 84 | 4 | 72 | 317 | 81 | 325 | 1.24e-105 | 311 |
| MS.gene31803.t1 | AT3G49360 | 54.286 | 245 | 103 | 4 | 78 | 317 | 11 | 251 | 3.69e-86 | 259 |
| MS.gene31803.t1 | AT1G13700 | 50.413 | 242 | 116 | 2 | 80 | 317 | 20 | 261 | 3.45e-82 | 250 |
| MS.gene31803.t1 | AT1G13700 | 50.413 | 242 | 116 | 2 | 80 | 317 | 20 | 261 | 3.45e-82 | 250 |
| MS.gene31803.t1 | AT1G13700 | 50.413 | 242 | 116 | 2 | 80 | 317 | 20 | 261 | 3.45e-82 | 250 |
| MS.gene31803.t1 | AT5G24410 | 52.653 | 245 | 107 | 4 | 78 | 317 | 17 | 257 | 1.52e-80 | 245 |
| MS.gene31803.t1 | AT5G24420 | 52.033 | 246 | 108 | 5 | 78 | 317 | 11 | 252 | 1.08e-77 | 238 |
Find 70 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCAAAACTGTTTA+AGG | 0.136078 | 1.1:-14034285 | MS.gene31803:CDS |
| ATGTTTGAATTTCAGGAAAT+TGG | 0.207149 | 1.1:-14035244 | MS.gene31803:intron |
| TGCTTGTAACCAAACGTCTT+AGG | 0.231535 | 1.1:+14034651 | None:intergenic |
| ATTCTCTCTGATGGTGGTTT+TGG | 0.280005 | 1.1:+14034482 | None:intergenic |
| AACACTTTATTATGCCTTAG+AGG | 0.288583 | 1.1:+14035665 | None:intergenic |
| AAACCATTGATTGGTCAAAA+TGG | 0.309040 | 1.1:-14035203 | MS.gene31803:CDS |
| AGGAGCATGAGATCAAATTT+TGG | 0.311450 | 1.1:+14034599 | None:intergenic |
| TATTTCACTGTTGCTTTGTC+TGG | 0.315803 | 1.1:-14035491 | MS.gene31803:CDS |
| TTACTTTCTAAGTGATCCTT+TGG | 0.360528 | 1.1:+14035150 | None:intergenic |
| GTGCACAAAATAAGCTACTT+TGG | 0.391008 | 1.1:+14035759 | None:intergenic |
| TTGGAAGAAGCATTGATAAC+TGG | 0.400430 | 1.1:+14034446 | None:intergenic |
| TGATCTCATGCTCCTAGGTA+TGG | 0.406465 | 1.1:-14034591 | MS.gene31803:CDS |
| TGAAACAACCCTAAGACGTT+TGG | 0.412525 | 1.1:-14034660 | MS.gene31803:CDS |
| TTCTCCAAGAGGATCAGAAA+TGG | 0.419423 | 1.1:-14034526 | MS.gene31803:CDS |
| AACAAATTCATCAAAGAAAG+AGG | 0.421608 | 1.1:-14035515 | MS.gene31803:CDS |
| GCTTGTAACCAAACGTCTTA+GGG | 0.422376 | 1.1:+14034652 | None:intergenic |
| TTCACTGTTGCTTTGTCTGG+TGG | 0.432382 | 1.1:-14035488 | MS.gene31803:CDS |
| TAAACATTGAGAGGAGGAAT+TGG | 0.433260 | 1.1:+14034728 | None:intergenic |
| GGCATCACTTAAGTGGGAAA+AGG | 0.443000 | 1.1:-14035612 | MS.gene31803:CDS |
| TACTTTCTAAGTGATCCTTT+GGG | 0.443581 | 1.1:+14035151 | None:intergenic |
| TAACCCATTTCTGATCCTCT+TGG | 0.454962 | 1.1:+14034522 | None:intergenic |
| GAAAAGGTTTCACCTCTTGA+AGG | 0.456560 | 1.1:-14034335 | MS.gene31803:CDS |
| CATGTTGCATCTTTATTCCC+AGG | 0.457125 | 1.1:-14034557 | MS.gene31803:CDS |
| CTCTTGAAGGGGAATTGAAA+TGG | 0.460789 | 1.1:-14034322 | MS.gene31803:CDS |
| AAAGATGCAACATGTCCATC+TGG | 0.461834 | 1.1:+14034566 | None:intergenic |
| TAAACATCAGCTGCTCCATC+AGG | 0.473530 | 1.1:+14034683 | None:intergenic |
| TGTTATGTTGCCTGTTGAAA+AGG | 0.474855 | 1.1:-14034351 | MS.gene31803:CDS |
| AATTATAAGCTTGCCAGTGA+TGG | 0.484242 | 1.1:-14035129 | MS.gene31803:CDS |
| CAATCAATGGTTTCAGCATA+GGG | 0.486339 | 1.1:+14035213 | None:intergenic |
| CGCTGTTTACACTGCACTTG+AGG | 0.487318 | 1.1:-14034387 | MS.gene31803:CDS |
| GATCTCATGCTCCTAGGTAT+GGG | 0.491824 | 1.1:-14034590 | MS.gene31803:CDS |
| CCAATCAATGGTTTCAGCAT+AGG | 0.494503 | 1.1:+14035212 | None:intergenic |
| AAATAGAGGCATCACTTAAG+TGG | 0.496228 | 1.1:-14035619 | MS.gene31803:CDS |
| GCATCACTTAAGTGGGAAAA+GGG | 0.504570 | 1.1:-14035611 | MS.gene31803:CDS |
| TCTCCAAGAGGATCAGAAAT+GGG | 0.506655 | 1.1:-14034525 | MS.gene31803:CDS |
| CAGCTGCTCCATCAGGTGGT+AGG | 0.508616 | 1.1:+14034690 | None:intergenic |
| AAATTTGATCTCATGCTCCT+AGG | 0.509138 | 1.1:-14034596 | MS.gene31803:CDS |
| AAAAGGTTTCACCTCTTGAA+GGG | 0.515655 | 1.1:-14034334 | MS.gene31803:CDS |
| AGTCACCACCATTGCTACAT+TGG | 0.519545 | 1.1:+14034427 | None:intergenic |
| CCTATGCTGAAACCATTGAT+TGG | 0.520392 | 1.1:-14035212 | MS.gene31803:CDS |
| GGAACATCTTGCTGTTTCGT+TGG | 0.529475 | 1.1:-14035561 | MS.gene31803:CDS |
| AGCTGCTCCATCAGGTGGTA+GGG | 0.529718 | 1.1:+14034691 | None:intergenic |
| GTGAAAGTAATTCTCTCTGA+TGG | 0.540458 | 1.1:+14034473 | None:intergenic |
| GATCATTAATCAAGTACCTA+AGG | 0.543945 | 1.1:-14035466 | MS.gene31803:intron |
| ATTAGTCAAAGTTGTTGAGA+AGG | 0.549232 | 1.1:+14035793 | None:intergenic |
| CTCCTAGGTATGGGTCCAGA+TGG | 0.553952 | 1.1:-14034581 | MS.gene31803:CDS |
| AATAGAGGCATCACTTAAGT+GGG | 0.554935 | 1.1:-14035618 | MS.gene31803:CDS |
| TTGAAATGGTACTTAGACAA+AGG | 0.555841 | 1.1:-14034308 | MS.gene31803:CDS |
| TGCTTCTTCCAATGTAGCAA+TGG | 0.565976 | 1.1:-14034435 | MS.gene31803:CDS |
| GCAATGGTGGTGACTGGCGC+GGG | 0.566203 | 1.1:-14034419 | MS.gene31803:CDS |
| CATTTCAATTCCCCTTCAAG+AGG | 0.566687 | 1.1:+14034323 | None:intergenic |
| GATGATTCCCTACCACCTGA+TGG | 0.566852 | 1.1:-14034698 | MS.gene31803:CDS |
| AATGTAGCAATGGTGGTGAC+TGG | 0.575191 | 1.1:-14034425 | MS.gene31803:CDS |
| AAAATTGATGTCTTTAGTGA+TGG | 0.578624 | 1.1:+14035722 | None:intergenic |
| AAAGGGTTATAAGAATGTTG+AGG | 0.580239 | 1.1:-14035594 | MS.gene31803:CDS |
| TCAATAGCATAAACATTGAG+AGG | 0.598228 | 1.1:+14034719 | None:intergenic |
| AAAGGTTTCACCTCTTGAAG+GGG | 0.598919 | 1.1:-14034333 | MS.gene31803:CDS |
| CTTGGAGAGAAATCCATCAC+TGG | 0.601315 | 1.1:+14035116 | None:intergenic |
| CTTGGAGAAGAGCATGACCT+GGG | 0.611662 | 1.1:+14034540 | None:intergenic |
| AAAGTAATTCTCTCTGATGG+TGG | 0.620404 | 1.1:+14034476 | None:intergenic |
| CAGTGATGGATTTCTCTCCA+AGG | 0.622114 | 1.1:-14035115 | MS.gene31803:intron |
| TCTTGGAGAAGAGCATGACC+TGG | 0.622800 | 1.1:+14034539 | None:intergenic |
| TGATGAGAGAGTTGTCCCAA+AGG | 0.638984 | 1.1:-14035166 | MS.gene31803:CDS |
| ACATCAGCTGCTCCATCAGG+TGG | 0.642046 | 1.1:+14034686 | None:intergenic |
| AGGTCATGCTCTTCTCCAAG+AGG | 0.654284 | 1.1:-14034537 | MS.gene31803:CDS |
| AGCAATGGTGGTGACTGGCG+CGG | 0.655666 | 1.1:-14034420 | MS.gene31803:CDS |
| GTCCATCTGGACCCATACCT+AGG | 0.668407 | 1.1:+14034579 | None:intergenic |
| ATAGCATAAACATTGAGAGG+AGG | 0.671912 | 1.1:+14034722 | None:intergenic |
| TTCTTCCAATGTAGCAATGG+TGG | 0.677085 | 1.1:-14034432 | MS.gene31803:CDS |
| CTCAAGTGCAGTGTAAACAG+CGG | 0.705808 | 1.1:+14034388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAATGTGATTATA+AGG | + | chr1.1:14035295-14035314 | None:intergenic | 10.0% |
| !! | ATACTAGAAATAAATAATTA+AGG | + | chr1.1:14034785-14034804 | None:intergenic | 10.0% |
| !! | ATTTAAAAGAAATTGTAATT+AGG | - | chr1.1:14034737-14034756 | MS.gene31803:intron | 10.0% |
| !! | AATCACATGAAATTTATATT+AGG | + | chr1.1:14034694-14034713 | None:intergenic | 15.0% |
| !! | GAAAATTATGTTTGAATTTC+AGG | - | chr1.1:14034826-14034845 | MS.gene31803:intron | 20.0% |
| !! | TATTGAAGAATATAACACAA+TGG | + | chr1.1:14035079-14035098 | None:intergenic | 20.0% |
| !!! | ATCAAATTTTGGTAATTCAT+TGG | + | chr1.1:14035470-14035489 | None:intergenic | 20.0% |
| !!! | ATGTGATTTTAATGTTACAT+AGG | - | chr1.1:14034706-14034725 | MS.gene31803:CDS | 20.0% |
| !!! | ATTTTCATTATTCTTTTGTC+AGG | - | chr1.1:14035324-14035343 | MS.gene31803:intron | 20.0% |
| !!! | GAAATTAATCATTTTGATGT+TGG | - | chr1.1:14035043-14035062 | MS.gene31803:intron | 20.0% |
| ! | AAAATTGATGTCTTTAGTGA+TGG | + | chr1.1:14034358-14034377 | None:intergenic | 25.0% |
| ! | AACAAATTCATCAAAGAAAG+AGG | - | chr1.1:14034562-14034581 | MS.gene31803:CDS | 25.0% |
| ! | AGGATTTCAAGAACAAAAAA+TGG | - | chr1.1:14034757-14034776 | MS.gene31803:intron | 25.0% |
| ! | ATGTTTGAATTTCAGGAAAT+TGG | - | chr1.1:14034833-14034852 | MS.gene31803:intron | 25.0% |
| ! | TTCAAGCAAAATAATCAACT+TGG | + | chr1.1:14035004-14035023 | None:intergenic | 25.0% |
| !! | CTTCAATATATACTCCTTTT+AGG | - | chr1.1:14035091-14035110 | MS.gene31803:intron | 25.0% |
| AAAGGGTTATAAGAATGTTG+AGG | - | chr1.1:14034483-14034502 | MS.gene31803:CDS | 30.0% | |
| AAATCGAACAGCTAATCAAA+TGG | + | chr1.1:14035156-14035175 | None:intergenic | 30.0% | |
| AACACTTTATTATGCCTTAG+AGG | + | chr1.1:14034415-14034434 | None:intergenic | 30.0% | |
| AATCAAATGGTTAAGAGACA+CGG | + | chr1.1:14035143-14035162 | None:intergenic | 30.0% | |
| AATGACATCGTAATTAGAGA+AGG | + | chr1.1:14035199-14035218 | None:intergenic | 30.0% | |
| ATATAACACAATGGTAACTG+AGG | + | chr1.1:14035070-14035089 | None:intergenic | 30.0% | |
| ATGACATCGTAATTAGAGAA+GGG | + | chr1.1:14035198-14035217 | None:intergenic | 30.0% | |
| ATTAGTCAAAGTTGTTGAGA+AGG | + | chr1.1:14034287-14034306 | None:intergenic | 30.0% | |
| GATCATTAATCAAGTACCTA+AGG | - | chr1.1:14034611-14034630 | MS.gene31803:CDS | 30.0% | |
| GCACATGAATTAATTTACCT+TGG | + | chr1.1:14034982-14035001 | None:intergenic | 30.0% | |
| TACTTTCTAAGTGATCCTTT+GGG | + | chr1.1:14034929-14034948 | None:intergenic | 30.0% | |
| TCAATAGCATAAACATTGAG+AGG | + | chr1.1:14035361-14035380 | None:intergenic | 30.0% | |
| TCGGCAATAAGATTTATTGA+CGG | + | chr1.1:14035260-14035279 | None:intergenic | 30.0% | |
| TGCTTGAAGAAGAATGAAAA+TGG | - | chr1.1:14035016-14035035 | MS.gene31803:intron | 30.0% | |
| TGTTAAGAATTACACACCTT+AGG | + | chr1.1:14034630-14034649 | None:intergenic | 30.0% | |
| TTACTTTCTAAGTGATCCTT+TGG | + | chr1.1:14034930-14034949 | None:intergenic | 30.0% | |
| TTCTCTAATTACGATGTCAT+TGG | - | chr1.1:14035198-14035217 | MS.gene31803:CDS | 30.0% | |
| TTGAAATGGTACTTAGACAA+AGG | - | chr1.1:14035769-14035788 | MS.gene31803:CDS | 30.0% | |
| ! | AAACCATTGATTGGTCAAAA+TGG | - | chr1.1:14034874-14034893 | MS.gene31803:intron | 30.0% |
| ! | AACCAATGTTTTTCCCAATT+TGG | + | chr1.1:14034387-14034406 | None:intergenic | 30.0% |
| ! | ACCAATGTTTTTCCCAATTT+GGG | + | chr1.1:14034386-14034405 | None:intergenic | 30.0% |
| ! | ATTTTTCCGACACATCTATT+TGG | + | chr1.1:14034442-14034461 | None:intergenic | 30.0% |
| ! | CAATTTTACCAACCCAAATT+GGG | - | chr1.1:14034371-14034390 | MS.gene31803:CDS | 30.0% |
| ! | TCAATTTTACCAACCCAAAT+TGG | - | chr1.1:14034370-14034389 | MS.gene31803:CDS | 30.0% |
| ! | TTTTCACCAAATAGATGTGT+CGG | - | chr1.1:14034433-14034452 | MS.gene31803:CDS | 30.0% |
| !! | GATTTTAATGTTACATAGGC+TGG | - | chr1.1:14034710-14034729 | MS.gene31803:CDS | 30.0% |
| AAAAGGTTTCACCTCTTGAA+GGG | - | chr1.1:14035743-14035762 | MS.gene31803:CDS | 35.0% | |
| AAAGTAATTCTCTCTGATGG+TGG | + | chr1.1:14035604-14035623 | None:intergenic | 35.0% | |
| AAATTTGATCTCATGCTCCT+AGG | - | chr1.1:14035481-14035500 | MS.gene31803:CDS | 35.0% | |
| AATTATAAGCTTGCCAGTGA+TGG | - | chr1.1:14034948-14034967 | MS.gene31803:intron | 35.0% | |
| ACCCAAATTGGGAAAAACAT+TGG | - | chr1.1:14034382-14034401 | MS.gene31803:CDS | 35.0% | |
| ATAGCATAAACATTGAGAGG+AGG | + | chr1.1:14035358-14035377 | None:intergenic | 35.0% | |
| CAATCAATGGTTTCAGCATA+GGG | + | chr1.1:14034867-14034886 | None:intergenic | 35.0% | |
| CGGCAATAAGATTTATTGAC+GGG | + | chr1.1:14035259-14035278 | None:intergenic | 35.0% | |
| GTGAAAGTAATTCTCTCTGA+TGG | + | chr1.1:14035607-14035626 | None:intergenic | 35.0% | |
| GTGCACAAAATAAGCTACTT+TGG | + | chr1.1:14034321-14034340 | None:intergenic | 35.0% | |
| TAAACATTGAGAGGAGGAAT+TGG | + | chr1.1:14035352-14035371 | None:intergenic | 35.0% | |
| TAGATGTGTCGGAAAAATAG+AGG | - | chr1.1:14034444-14034463 | MS.gene31803:CDS | 35.0% | |
| TATAAGGCCTCACTAAAGAT+CGG | + | chr1.1:14035279-14035298 | None:intergenic | 35.0% | |
| TGTCACGATATACACCTAAA+AGG | + | chr1.1:14035108-14035127 | None:intergenic | 35.0% | |
| TGTTATGTTGCCTGTTGAAA+AGG | - | chr1.1:14035726-14035745 | MS.gene31803:CDS | 35.0% | |
| ! | ATGTTTTTCCCAATTTGGGT+TGG | + | chr1.1:14034382-14034401 | None:intergenic | 35.0% |
| ! | GAATGTTGAGGTTTTCAGTA+AGG | - | chr1.1:14034495-14034514 | MS.gene31803:CDS | 35.0% |
| ! | GTCAAAATGGCATGTTTTCT+GGG | - | chr1.1:14034887-14034906 | MS.gene31803:intron | 35.0% |
| ! | TGCTGCTTCAAAACTGTTTA+AGG | - | chr1.1:14035792-14035811 | MS.gene31803:CDS | 35.0% |
| !! | AAATAGAGGCATCACTTAAG+TGG | - | chr1.1:14034458-14034477 | MS.gene31803:CDS | 35.0% |
| !! | AATAGAGGCATCACTTAAGT+GGG | - | chr1.1:14034459-14034478 | MS.gene31803:CDS | 35.0% |
| !! | AGGAGCATGAGATCAAATTT+TGG | + | chr1.1:14035481-14035500 | None:intergenic | 35.0% |
| !! | TATTTCACTGTTGCTTTGTC+TGG | - | chr1.1:14034586-14034605 | MS.gene31803:CDS | 35.0% |
| !! | TTGGAAGAAGCATTGATAAC+TGG | + | chr1.1:14035634-14035653 | None:intergenic | 35.0% |
| !!! | ACATTGGTTTTCAACCTCTA+AGG | - | chr1.1:14034398-14034417 | MS.gene31803:CDS | 35.0% |
| !!! | ATGCCATTTTGACCAATCAA+TGG | + | chr1.1:14034880-14034899 | None:intergenic | 35.0% |
| AAAGATGCAACATGTCCATC+TGG | + | chr1.1:14035514-14035533 | None:intergenic | 40.0% | |
| AAAGGTTTCACCTCTTGAAG+GGG | - | chr1.1:14035744-14035763 | MS.gene31803:CDS | 40.0% | |
| CATGTTGCATCTTTATTCCC+AGG | - | chr1.1:14035520-14035539 | MS.gene31803:CDS | 40.0% | |
| CATTTCAATTCCCCTTCAAG+AGG | + | chr1.1:14035757-14035776 | None:intergenic | 40.0% | |
| CCAATCAATGGTTTCAGCAT+AGG | + | chr1.1:14034868-14034887 | None:intergenic | 40.0% | |
| CCTATGCTGAAACCATTGAT+TGG | - | chr1.1:14034865-14034884 | MS.gene31803:intron | 40.0% | |
| CTCTTGAAGGGGAATTGAAA+TGG | - | chr1.1:14035755-14035774 | MS.gene31803:CDS | 40.0% | |
| CTTATTGCCGATCTTTAGTG+AGG | - | chr1.1:14035269-14035288 | MS.gene31803:intron | 40.0% | |
| GAAAAGGTTTCACCTCTTGA+AGG | - | chr1.1:14035742-14035761 | MS.gene31803:CDS | 40.0% | |
| GAACTAACAATCAGCGAACT+TGG | + | chr1.1:14035237-14035256 | None:intergenic | 40.0% | |
| GCATCACTTAAGTGGGAAAA+GGG | - | chr1.1:14034466-14034485 | MS.gene31803:CDS | 40.0% | |
| GCTTGTAACCAAACGTCTTA+GGG | + | chr1.1:14035428-14035447 | None:intergenic | 40.0% | |
| TAACCCATTTCTGATCCTCT+TGG | + | chr1.1:14035558-14035577 | None:intergenic | 40.0% | |
| TCTCCAAGAGGATCAGAAAT+GGG | - | chr1.1:14035552-14035571 | MS.gene31803:CDS | 40.0% | |
| TGAAACAACCCTAAGACGTT+TGG | - | chr1.1:14035417-14035436 | MS.gene31803:intron | 40.0% | |
| TGCTTCTTCCAATGTAGCAA+TGG | - | chr1.1:14035642-14035661 | MS.gene31803:CDS | 40.0% | |
| TGCTTGTAACCAAACGTCTT+AGG | + | chr1.1:14035429-14035448 | None:intergenic | 40.0% | |
| TTCTCCAAGAGGATCAGAAA+TGG | - | chr1.1:14035551-14035570 | MS.gene31803:CDS | 40.0% | |
| TTCTTCCAATGTAGCAATGG+TGG | - | chr1.1:14035645-14035664 | MS.gene31803:CDS | 40.0% | |
| ! | AGAGGTGAAACCTTTTCAAC+AGG | + | chr1.1:14035739-14035758 | None:intergenic | 40.0% |
| ! | GGTCAAAATGGCATGTTTTC+TGG | - | chr1.1:14034886-14034905 | MS.gene31803:intron | 40.0% |
| !!! | ATTCTCTCTGATGGTGGTTT+TGG | + | chr1.1:14035598-14035617 | None:intergenic | 40.0% |
| AGTCACCACCATTGCTACAT+TGG | + | chr1.1:14035653-14035672 | None:intergenic | 45.0% | |
| CTCAAGTGCAGTGTAAACAG+CGG | + | chr1.1:14035692-14035711 | None:intergenic | 45.0% | |
| CTTGGAGAGAAATCCATCAC+TGG | + | chr1.1:14034964-14034983 | None:intergenic | 45.0% | |
| GATCTCATGCTCCTAGGTAT+GGG | - | chr1.1:14035487-14035506 | MS.gene31803:CDS | 45.0% | |
| GGCATCACTTAAGTGGGAAA+AGG | - | chr1.1:14034465-14034484 | MS.gene31803:CDS | 45.0% | |
| TAAACATCAGCTGCTCCATC+AGG | + | chr1.1:14035397-14035416 | None:intergenic | 45.0% | |
| TGATCTCATGCTCCTAGGTA+TGG | - | chr1.1:14035486-14035505 | MS.gene31803:CDS | 45.0% | |
| TGATGAGAGAGTTGTCCCAA+AGG | - | chr1.1:14034911-14034930 | MS.gene31803:intron | 45.0% | |
| ! | AATGTAGCAATGGTGGTGAC+TGG | - | chr1.1:14035652-14035671 | MS.gene31803:CDS | 45.0% |
| !! | CAGTGATGGATTTCTCTCCA+AGG | - | chr1.1:14034962-14034981 | MS.gene31803:intron | 45.0% |
| !! | GGAACATCTTGCTGTTTCGT+TGG | - | chr1.1:14034516-14034535 | MS.gene31803:CDS | 45.0% |
| !! | TTCACTGTTGCTTTGTCTGG+TGG | - | chr1.1:14034589-14034608 | MS.gene31803:CDS | 45.0% |
| AGGTCATGCTCTTCTCCAAG+AGG | - | chr1.1:14035540-14035559 | MS.gene31803:CDS | 50.0% | |
| CGCTGTTTACACTGCACTTG+AGG | - | chr1.1:14035690-14035709 | MS.gene31803:CDS | 50.0% | |
| GATGATTCCCTACCACCTGA+TGG | - | chr1.1:14035379-14035398 | MS.gene31803:intron | 50.0% | |
| ! | CTTGGAGAAGAGCATGACCT+GGG | + | chr1.1:14035540-14035559 | None:intergenic | 50.0% |
| ! | TCTTGGAGAAGAGCATGACC+TGG | + | chr1.1:14035541-14035560 | None:intergenic | 50.0% |
| !!! | GTGGTTTTGGTGAGTCAGTG+AGG | + | chr1.1:14035585-14035604 | None:intergenic | 50.0% |
| ACATCAGCTGCTCCATCAGG+TGG | + | chr1.1:14035394-14035413 | None:intergenic | 55.0% | |
| AGCTGCTCCATCAGGTGGTA+GGG | + | chr1.1:14035389-14035408 | None:intergenic | 55.0% | |
| CTCCTAGGTATGGGTCCAGA+TGG | - | chr1.1:14035496-14035515 | MS.gene31803:CDS | 55.0% | |
| GTCCATCTGGACCCATACCT+AGG | + | chr1.1:14035501-14035520 | None:intergenic | 55.0% | |
| CAGCTGCTCCATCAGGTGGT+AGG | + | chr1.1:14035390-14035409 | None:intergenic | 60.0% | |
| ! | AGCAATGGTGGTGACTGGCG+CGG | - | chr1.1:14035657-14035676 | MS.gene31803:CDS | 60.0% |
| ! | GCAATGGTGGTGACTGGCGC+GGG | - | chr1.1:14035658-14035677 | MS.gene31803:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14034280 | 14035819 | 14034280 | ID=MS.gene31803 |
| chr1.1 | mRNA | 14034280 | 14035819 | 14034280 | ID=MS.gene31803.t1;Parent=MS.gene31803 |
| chr1.1 | exon | 14035467 | 14035819 | 14035467 | ID=MS.gene31803.t1.exon1;Parent=MS.gene31803.t1 |
| chr1.1 | CDS | 14035467 | 14035819 | 14035467 | ID=cds.MS.gene31803.t1;Parent=MS.gene31803.t1 |
| chr1.1 | exon | 14035116 | 14035251 | 14035116 | ID=MS.gene31803.t1.exon2;Parent=MS.gene31803.t1 |
| chr1.1 | CDS | 14035116 | 14035251 | 14035116 | ID=cds.MS.gene31803.t1;Parent=MS.gene31803.t1 |
| chr1.1 | exon | 14034280 | 14034753 | 14034280 | ID=MS.gene31803.t1.exon3;Parent=MS.gene31803.t1 |
| chr1.1 | CDS | 14034280 | 14034753 | 14034280 | ID=cds.MS.gene31803.t1;Parent=MS.gene31803.t1 |
| Gene Sequence |
| Protein sequence |
