Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31861.t1 | XP_013466442.1 | 64.5 | 467 | 29 | 3 | 1 | 336 | 1 | 461 | 9.60E-153 | 549.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31861.t1 | P56725 | 43.3 | 460 | 121 | 5 | 8 | 336 | 4 | 454 | 2.1e-92 | 340.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31861.t1 | A0A072VGD7 | 64.5 | 467 | 29 | 3 | 1 | 336 | 1 | 461 | 6.9e-153 | 549.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene31861 | 0.801611 | 8.30E-49 | -1.69E-46 |
| MS.gene051960 | MS.gene31861 | 0.802765 | 4.80E-49 | -1.69E-46 |
| MS.gene052053 | MS.gene31861 | 0.866322 | 3.10E-65 | -1.69E-46 |
| MS.gene052570 | MS.gene31861 | 0.817663 | 2.93E-52 | -1.69E-46 |
| MS.gene053932 | MS.gene31861 | 0.830931 | 2.22E-55 | -1.69E-46 |
| MS.gene055549 | MS.gene31861 | 0.852757 | 3.74E-61 | -1.69E-46 |
| MS.gene055550 | MS.gene31861 | 0.858578 | 7.48E-63 | -1.69E-46 |
| MS.gene055551 | MS.gene31861 | 0.828195 | 1.03E-54 | -1.69E-46 |
| MS.gene056311 | MS.gene31861 | 0.801863 | 7.36E-49 | -1.69E-46 |
| MS.gene056365 | MS.gene31861 | 0.837205 | 5.96E-57 | -1.69E-46 |
| MS.gene056530 | MS.gene31861 | 0.828464 | 8.86E-55 | -1.69E-46 |
| MS.gene057001 | MS.gene31861 | 0.800841 | 1.19E-48 | -1.69E-46 |
| MS.gene057226 | MS.gene31861 | 0.811383 | 7.20E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene31861 | 0.856543 | 3.00E-62 | -1.69E-46 |
| MS.gene058629 | MS.gene31861 | 0.827982 | 1.16E-54 | -1.69E-46 |
| MS.gene058630 | MS.gene31861 | 0.835076 | 2.07E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31861.t1 | MTR_1g029540 | 89.011 | 273 | 23 | 2 | 1 | 272 | 1 | 267 | 5.09e-175 | 493 |
| MS.gene31861.t1 | MTR_1g029540 | 88.060 | 67 | 8 | 0 | 270 | 336 | 395 | 461 | 1.65e-31 | 123 |
| MS.gene31861.t1 | MTR_4g008630 | 82.721 | 272 | 45 | 1 | 1 | 272 | 1 | 270 | 4.27e-155 | 443 |
| MS.gene31861.t1 | MTR_4g008630 | 85.075 | 67 | 10 | 0 | 270 | 336 | 398 | 464 | 5.74e-31 | 122 |
| MS.gene31861.t1 | MTR_8g090095 | 63.396 | 265 | 94 | 3 | 10 | 272 | 21 | 284 | 1.31e-112 | 335 |
| MS.gene31861.t1 | MTR_8g090095 | 67.164 | 67 | 22 | 0 | 270 | 336 | 415 | 481 | 4.26e-22 | 97.1 |
| MS.gene31861.t1 | MTR_5g087620 | 25.625 | 320 | 192 | 12 | 15 | 296 | 11 | 322 | 2.20e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCATTGATGTTCCTTCTA+TGG | 0.222334 | 1.4:+14581756 | MS.gene31861:CDS |
| GGAAATTTAGTTTCTGCATT+TGG | 0.256117 | 1.4:-14581487 | None:intergenic |
| TTTGAGATTGAAATGGAGTT+TGG | 0.282536 | 1.4:-14581412 | None:intergenic |
| TTGGTTACTGCTTCAGATAT+TGG | 0.308225 | 1.4:+14582450 | MS.gene31861:CDS |
| ATATTGGGAATGTTGTTAAA+AGG | 0.310146 | 1.4:+14582466 | MS.gene31861:CDS |
| CTCTTCCATTTGGGAGAGAA+TGG | 0.326959 | 1.4:+14581708 | MS.gene31861:CDS |
| TGGTTACTGCTTCAGATATT+GGG | 0.331872 | 1.4:+14582451 | MS.gene31861:CDS |
| GAACTTCGAAGTGATGAAAA+TGG | 0.335131 | 1.4:-14581438 | None:intergenic |
| AACTAAATTTCCTTCTCATA+TGG | 0.340746 | 1.4:+14581498 | MS.gene31861:CDS |
| TTGGGCTAAAAGACATGAAT+TGG | 0.369394 | 1.4:+14582431 | MS.gene31861:CDS |
| GAAATTTAGTTTCTGCATTT+GGG | 0.369585 | 1.4:-14581486 | None:intergenic |
| TTCTTCCCCTCAATGCTTAG+AGG | 0.377825 | 1.4:-14581949 | None:intergenic |
| GTGAAGCATCCTTCCATAGA+AGG | 0.378318 | 1.4:-14581769 | None:intergenic |
| CCATCATGAAATCAACGAAT+TGG | 0.384808 | 1.4:-14581795 | None:intergenic |
| TTCTCTATCAACTCCAAGTA+AGG | 0.388992 | 1.4:-14581883 | None:intergenic |
| CTCAATGCTTAGAGGGTTGA+AGG | 0.389883 | 1.4:-14581941 | None:intergenic |
| TGGAGTTTCTCGTATGGAAA+TGG | 0.396766 | 1.4:+14582572 | MS.gene31861:CDS |
| ATGATATGCCAGCTTTCAAT+TGG | 0.402912 | 1.4:-14581739 | None:intergenic |
| TTAGTTTCTGCATTTGGGTT+GGG | 0.406447 | 1.4:-14581481 | None:intergenic |
| TTTGGAATTGCTTTGGCCAT+TGG | 0.414251 | 1.4:-14581230 | None:intergenic |
| GAATGTTGTTAAAAGGTTGA+TGG | 0.417402 | 1.4:+14582473 | MS.gene31861:CDS |
| ATGGATGTTTGAGATTGAAA+TGG | 0.424877 | 1.4:-14581419 | None:intergenic |
| TGATTCAAATGGCCTTGTGC+TGG | 0.429358 | 1.4:-14581283 | None:intergenic |
| TCTGCATTTGGGTTGGGAGG+AGG | 0.435083 | 1.4:-14581475 | None:intergenic |
| TGATTTCATGATGGCTCAAA+AGG | 0.437813 | 1.4:+14581804 | MS.gene31861:CDS |
| AAACCAAGTGGTGATTGTTA+TGG | 0.444236 | 1.4:+14581252 | MS.gene31861:CDS |
| AACATACCTGTCCATTATGT+TGG | 0.450291 | 1.4:+14581340 | MS.gene31861:CDS |
| TACAATTCGTGGCCAAGGTT+CGG | 0.451038 | 1.4:+14581387 | MS.gene31861:CDS |
| CCAATTCGTTGATTTCATGA+TGG | 0.465832 | 1.4:+14581795 | MS.gene31861:CDS |
| AAATGTTGTTGGTACGTCAA+TGG | 0.466486 | 1.4:+14582542 | MS.gene31861:CDS |
| AATTCTGTGAATTCAGTAAT+GGG | 0.469253 | 1.4:+14581827 | MS.gene31861:CDS |
| GTATAGAAGTCCCAACATAA+TGG | 0.469536 | 1.4:-14581351 | None:intergenic |
| TTTAGTTTCTGCATTTGGGT+TGG | 0.476626 | 1.4:-14581482 | None:intergenic |
| TCTTCCATTTGGGAGAGAAT+GGG | 0.477851 | 1.4:+14581709 | MS.gene31861:CDS |
| TCACTTGCAATAAGAAGCAC+TGG | 0.478475 | 1.4:+14581908 | MS.gene31861:CDS |
| ACATACCTGTCCATTATGTT+GGG | 0.490823 | 1.4:+14581341 | MS.gene31861:CDS |
| TCTTCCCCTCAATGCTTAGA+GGG | 0.494369 | 1.4:-14581948 | None:intergenic |
| CAATAAGAAGCACTGGGCAG+TGG | 0.496638 | 1.4:+14581915 | MS.gene31861:CDS |
| GGTGTAGAAGCTGATTCAAA+TGG | 0.504630 | 1.4:-14581294 | None:intergenic |
| AGTAATCGAAGGTCCTTACT+TGG | 0.505818 | 1.4:+14581870 | MS.gene31861:CDS |
| TTCAACCCTCTAAGCATTGA+GGG | 0.512374 | 1.4:+14581943 | MS.gene31861:CDS |
| GTTTCTGCATTTGGGTTGGG+AGG | 0.514821 | 1.4:-14581478 | None:intergenic |
| AATAAGAAGCACTGGGCAGT+GGG | 0.521320 | 1.4:+14581916 | MS.gene31861:CDS |
| TAAAAGGTTGATGGAGACAA+TGG | 0.527148 | 1.4:+14582482 | MS.gene31861:CDS |
| TGGAGTTTGGATCCGAACCT+TGG | 0.531258 | 1.4:-14581399 | None:intergenic |
| AATCGTCAAGCTACAATTCG+TGG | 0.533085 | 1.4:+14581376 | MS.gene31861:CDS |
| GATTCAAATGGCCTTGTGCT+GGG | 0.534487 | 1.4:-14581282 | None:intergenic |
| GAATTCTGTGAATTCAGTAA+TGG | 0.537692 | 1.4:+14581826 | MS.gene31861:CDS |
| CTTCAACCCTCTAAGCATTG+AGG | 0.541335 | 1.4:+14581942 | MS.gene31861:CDS |
| ATTGATGTTCCTTCTATGGA+AGG | 0.543815 | 1.4:+14581760 | MS.gene31861:CDS |
| TGAAGGTGGAGTTTCTCGTA+TGG | 0.545785 | 1.4:+14582566 | MS.gene31861:CDS |
| TGTAAAGAGGCTTCAAAAGA+CGG | 0.554973 | 1.4:-14581523 | None:intergenic |
| GAAGTCCCAACATAATGGAC+AGG | 0.557790 | 1.4:-14581346 | None:intergenic |
| TTGGGAGGAGGTGAAACAAA+GGG | 0.558343 | 1.4:-14581463 | None:intergenic |
| GTTGGGAGGAGGTGAAACAA+AGG | 0.560569 | 1.4:-14581464 | None:intergenic |
| CAAGCTACAATTCGTGGCCA+AGG | 0.562846 | 1.4:+14581382 | MS.gene31861:CDS |
| AAATGGCCTTGTGCTGGGAA+AGG | 0.563121 | 1.4:-14581277 | None:intergenic |
| GATTGCATGAGTTCCGCCAC+AGG | 0.565307 | 1.4:-14581556 | None:intergenic |
| TGAGGGGAAGAAAGATTCAA+AGG | 0.569825 | 1.4:+14581960 | MS.gene31861:CDS |
| ACATCTTCGCGAGCCTGTGG+CGG | 0.571072 | 1.4:+14581543 | MS.gene31861:CDS |
| GAGGGGAAGAAAGATTCAAA+GGG | 0.594780 | 1.4:+14581961 | MS.gene31861:CDS |
| ATGGTACCTTTCCCAGCACA+AGG | 0.595372 | 1.4:+14581271 | MS.gene31861:CDS |
| GTAGACACTCATGCATGGAA+TGG | 0.601343 | 1.4:+14581983 | MS.gene31861:CDS |
| AAAGGGTAGACACTCATGCA+TGG | 0.602471 | 1.4:+14581978 | MS.gene31861:CDS |
| TTTACATCTTCGCGAGCCTG+TGG | 0.604307 | 1.4:+14581540 | MS.gene31861:CDS |
| AAAGACGGAACCATATGAGA+AGG | 0.610573 | 1.4:-14581508 | None:intergenic |
| TCAATGCTTAGAGGGTTGAA+GGG | 0.622576 | 1.4:-14581940 | None:intergenic |
| AATTCACTAATGGCTTCCAA+TGG | 0.622620 | 1.4:+14581214 | None:intergenic |
| GTTGGTACGTCAATGGATGA+AGG | 0.624718 | 1.4:+14582549 | MS.gene31861:CDS |
| GTACCATAACAATCACCACT+TGG | 0.627734 | 1.4:-14581255 | None:intergenic |
| AGGCTCGCGAAGATGTAAAG+AGG | 0.628262 | 1.4:-14581536 | None:intergenic |
| AGGTTGATGGAGACAATGGA+AGG | 0.642690 | 1.4:+14582486 | MS.gene31861:CDS |
| CACTTGCAATAAGAAGCACT+GGG | 0.643775 | 1.4:+14581909 | MS.gene31861:CDS |
| GTGATAAGATTAAGCGTGAG+AGG | 0.673993 | 1.4:-14581315 | None:intergenic |
| AATACAAGCAGAGTAATCGA+AGG | 0.676316 | 1.4:+14581859 | MS.gene31861:CDS |
| TCAACCCTCTAAGCATTGAG+GGG | 0.679812 | 1.4:+14581944 | MS.gene31861:CDS |
| GGTACGTCAATGGATGAAGG+TGG | 0.707930 | 1.4:+14582552 | MS.gene31861:CDS |
| ATAAGAAGCACTGGGCAGTG+GGG | 0.711121 | 1.4:+14581917 | MS.gene31861:CDS |
| GGAGGAGGTGAAACAAAGGG+AGG | 0.746890 | 1.4:-14581460 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAACTTAAAAATGTTGT+TGG | + | chr1.4:14582531-14582550 | MS.gene31861:CDS | 15.0% |
| !! | AAAGCAAGATAAAGTTTATT+TGG | + | chr1.4:14582106-14582125 | MS.gene31861:intron | 20.0% |
| !! | AAGCAAGATAAAGTTTATTT+GGG | + | chr1.4:14582107-14582126 | MS.gene31861:intron | 20.0% |
| !! | ACATCTTTGATAAAAATGAA+GGG | + | chr1.4:14582154-14582173 | MS.gene31861:intron | 20.0% |
| !!! | TCAGTTATATATGTATCTTT+TGG | + | chr1.4:14582027-14582046 | MS.gene31861:intron | 20.0% |
| ! | AAATTGAACAGATTGGAATT+GGG | + | chr1.4:14582076-14582095 | MS.gene31861:intron | 25.0% |
| ! | AACTAAATTTCCTTCTCATA+TGG | + | chr1.4:14581498-14581517 | MS.gene31861:CDS | 25.0% |
| ! | AATTCTGTGAATTCAGTAAT+GGG | + | chr1.4:14581827-14581846 | MS.gene31861:CDS | 25.0% |
| ! | ATAACACAAGTGTTAAAGAT+TGG | + | chr1.4:14582393-14582412 | MS.gene31861:intron | 25.0% |
| ! | ATATTGGGAATGTTGTTAAA+AGG | + | chr1.4:14582466-14582485 | MS.gene31861:CDS | 25.0% |
| ! | GACATCTTTGATAAAAATGA+AGG | + | chr1.4:14582153-14582172 | MS.gene31861:intron | 25.0% |
| !! | ACTTTCATCTGTTTTCAAAA+GGG | + | chr1.4:14581579-14581598 | MS.gene31861:CDS | 25.0% |
| !! | GAAATTTAGTTTCTGCATTT+GGG | - | chr1.4:14581489-14581508 | None:intergenic | 25.0% |
| !! | TGTAATTCATGACACTTTTA+TGG | + | chr1.4:14581606-14581625 | MS.gene31861:CDS | 25.0% |
| AAAAGAGGTGAACTTTCAAA+AGG | + | chr1.4:14582177-14582196 | MS.gene31861:intron | 30.0% | |
| AAAGAGGTGAACTTTCAAAA+GGG | + | chr1.4:14582178-14582197 | MS.gene31861:intron | 30.0% | |
| CAAATTGAACAGATTGGAAT+TGG | + | chr1.4:14582075-14582094 | MS.gene31861:intron | 30.0% | |
| GAATGTTGTTAAAAGGTTGA+TGG | + | chr1.4:14582473-14582492 | MS.gene31861:CDS | 30.0% | |
| GAATTCTGTGAATTCAGTAA+TGG | + | chr1.4:14581826-14581845 | MS.gene31861:CDS | 30.0% | |
| GATAAAAATGAAGGGAAAAG+AGG | + | chr1.4:14582162-14582181 | MS.gene31861:intron | 30.0% | |
| TATCATTGATGTTCCTTCTA+TGG | + | chr1.4:14581756-14581775 | MS.gene31861:CDS | 30.0% | |
| ! | ACAAGTGTTAAAGATTGGTT+TGG | + | chr1.4:14582398-14582417 | MS.gene31861:intron | 30.0% |
| ! | ATGGATGTTTGAGATTGAAA+TGG | - | chr1.4:14581422-14581441 | None:intergenic | 30.0% |
| ! | CACTTTCATCTGTTTTCAAA+AGG | + | chr1.4:14581578-14581597 | MS.gene31861:CDS | 30.0% |
| ! | GGAAATTTAGTTTCTGCATT+TGG | - | chr1.4:14581490-14581509 | None:intergenic | 30.0% |
| ! | GTTATCAAAACACTGTTTCT+TGG | - | chr1.4:14582378-14582397 | None:intergenic | 30.0% |
| ! | TACAGTTTTCTCTTCCATTT+GGG | + | chr1.4:14581699-14581718 | MS.gene31861:CDS | 30.0% |
| ! | TTACAGTTTTCTCTTCCATT+TGG | + | chr1.4:14581698-14581717 | MS.gene31861:CDS | 30.0% |
| ! | TTTGAGATTGAAATGGAGTT+TGG | - | chr1.4:14581415-14581434 | None:intergenic | 30.0% |
| AAACCAAGTGGTGATTGTTA+TGG | + | chr1.4:14581252-14581271 | MS.gene31861:CDS | 35.0% | |
| AAATGTTGTTGGTACGTCAA+TGG | + | chr1.4:14582542-14582561 | MS.gene31861:CDS | 35.0% | |
| AACATACCTGTCCATTATGT+TGG | + | chr1.4:14581340-14581359 | MS.gene31861:CDS | 35.0% | |
| AAGCAATTCCAAAAACCAAG+TGG | + | chr1.4:14581240-14581259 | MS.gene31861:CDS | 35.0% | |
| AATACAAGCAGAGTAATCGA+AGG | + | chr1.4:14581859-14581878 | MS.gene31861:CDS | 35.0% | |
| ACATACCTGTCCATTATGTT+GGG | + | chr1.4:14581341-14581360 | MS.gene31861:CDS | 35.0% | |
| ATGATATGCCAGCTTTCAAT+TGG | - | chr1.4:14581742-14581761 | None:intergenic | 35.0% | |
| ATTGATGTTCCTTCTATGGA+AGG | + | chr1.4:14581760-14581779 | MS.gene31861:CDS | 35.0% | |
| CCATCATGAAATCAACGAAT+TGG | - | chr1.4:14581798-14581817 | None:intergenic | 35.0% | |
| GAAAAACTCCAATTGAAAGC+TGG | + | chr1.4:14581731-14581750 | MS.gene31861:CDS | 35.0% | |
| GAACTTCGAAGTGATGAAAA+TGG | - | chr1.4:14581441-14581460 | None:intergenic | 35.0% | |
| GAAGAGAGAATTGAAGGAAT+GGG | + | chr1.4:14582204-14582223 | MS.gene31861:intron | 35.0% | |
| GAGGAACAAATTGAACAGAT+TGG | + | chr1.4:14582069-14582088 | MS.gene31861:intron | 35.0% | |
| GTATAGAAGTCCCAACATAA+TGG | - | chr1.4:14581354-14581373 | None:intergenic | 35.0% | |
| TGAAGAGAGAATTGAAGGAA+TGG | + | chr1.4:14582203-14582222 | MS.gene31861:intron | 35.0% | |
| TGATTTCATGATGGCTCAAA+AGG | + | chr1.4:14581804-14581823 | MS.gene31861:CDS | 35.0% | |
| TGGTTACTGCTTCAGATATT+GGG | + | chr1.4:14582451-14582470 | MS.gene31861:CDS | 35.0% | |
| TGTAAAGAGGCTTCAAAAGA+CGG | - | chr1.4:14581526-14581545 | None:intergenic | 35.0% | |
| TTCTCTATCAACTCCAAGTA+AGG | - | chr1.4:14581886-14581905 | None:intergenic | 35.0% | |
| TTGGGCTAAAAGACATGAAT+TGG | + | chr1.4:14582431-14582450 | MS.gene31861:CDS | 35.0% | |
| TTGGTTACTGCTTCAGATAT+TGG | + | chr1.4:14582450-14582469 | MS.gene31861:CDS | 35.0% | |
| ! | TTAGTTTCTGCATTTGGGTT+GGG | - | chr1.4:14581484-14581503 | None:intergenic | 35.0% |
| ! | TTCAATTTGTTCCTCTGTCA+AGG | - | chr1.4:14582064-14582083 | None:intergenic | 35.0% |
| ! | TTTAGTTTCTGCATTTGGGT+TGG | - | chr1.4:14581485-14581504 | None:intergenic | 35.0% |
| !! | AAAGATTGGTTTGGTTGTGA+AGG | + | chr1.4:14582407-14582426 | MS.gene31861:intron | 35.0% |
| !! | AACAATCACCACTTGGTTTT+TGG | - | chr1.4:14581251-14581270 | None:intergenic | 35.0% |
| !! | ACCTTAGAGAGCATTTCAAT+GGG | + | chr1.4:14582315-14582334 | MS.gene31861:intron | 35.0% |
| !! | CCAATTCGTTGATTTCATGA+TGG | + | chr1.4:14581795-14581814 | MS.gene31861:CDS | 35.0% |
| !! | TAAAAGGTTGATGGAGACAA+TGG | + | chr1.4:14582482-14582501 | MS.gene31861:CDS | 35.0% |
| !! | TACCTTAGAGAGCATTTCAA+TGG | + | chr1.4:14582314-14582333 | MS.gene31861:intron | 35.0% |
| !!! | CTTGGTTTTTGGAATTGCTT+TGG | - | chr1.4:14581240-14581259 | None:intergenic | 35.0% |
| AAAGACGGAACCATATGAGA+AGG | - | chr1.4:14581511-14581530 | None:intergenic | 40.0% | |
| AACAACAACAACCTTGACAG+AGG | + | chr1.4:14582050-14582069 | MS.gene31861:intron | 40.0% | |
| AATCGTCAAGCTACAATTCG+TGG | + | chr1.4:14581376-14581395 | MS.gene31861:CDS | 40.0% | |
| AATTCTAAGCCACCCTTCAA+CGG | + | chr1.4:14582260-14582279 | MS.gene31861:intron | 40.0% | |
| AGTAATCGAAGGTCCTTACT+TGG | + | chr1.4:14581870-14581889 | MS.gene31861:CDS | 40.0% | |
| GAGGGGAAGAAAGATTCAAA+GGG | + | chr1.4:14581961-14581980 | MS.gene31861:CDS | 40.0% | |
| GGGTTTGAAGAGAGAATTGA+AGG | + | chr1.4:14582198-14582217 | MS.gene31861:intron | 40.0% | |
| GGTTTATGAGTCATTGTGGA+TGG | + | chr1.4:14582286-14582305 | MS.gene31861:intron | 40.0% | |
| GTACCATAACAATCACCACT+TGG | - | chr1.4:14581258-14581277 | None:intergenic | 40.0% | |
| GTGATAAGATTAAGCGTGAG+AGG | - | chr1.4:14581318-14581337 | None:intergenic | 40.0% | |
| GTGGCTTAGAATTTCCAACT+GGG | - | chr1.4:14582253-14582272 | None:intergenic | 40.0% | |
| GTGTTGAGAGATGCTGATAA+AGG | + | chr1.4:14582129-14582148 | MS.gene31861:intron | 40.0% | |
| TCAATGCTTAGAGGGTTGAA+GGG | - | chr1.4:14581943-14581962 | None:intergenic | 40.0% | |
| TCTTCCATTTGGGAGAGAAT+GGG | + | chr1.4:14581709-14581728 | MS.gene31861:CDS | 40.0% | |
| TGAGGGGAAGAAAGATTCAA+AGG | + | chr1.4:14581960-14581979 | MS.gene31861:CDS | 40.0% | |
| TGGAGTTTCTCGTATGGAAA+TGG | + | chr1.4:14582572-14582591 | MS.gene31861:CDS | 40.0% | |
| TGGCTTAGAATTTCCAACTG+GGG | - | chr1.4:14582252-14582271 | None:intergenic | 40.0% | |
| ! | GGTGTAGAAGCTGATTCAAA+TGG | - | chr1.4:14581297-14581316 | None:intergenic | 40.0% |
| ! | TCAAAACACTGTTTCTTGGC+TGG | - | chr1.4:14582374-14582393 | None:intergenic | 40.0% |
| ! | TCACTTGCAATAAGAAGCAC+TGG | + | chr1.4:14581908-14581927 | MS.gene31861:CDS | 40.0% |
| ! | TGACACTTTTATGGCATCAG+TGG | + | chr1.4:14581615-14581634 | MS.gene31861:CDS | 40.0% |
| ! | TTTGGAATTGCTTTGGCCAT+TGG | - | chr1.4:14581233-14581252 | None:intergenic | 40.0% |
| ! | TTTTCCCATTCTCTCCCAAA+TGG | - | chr1.4:14581716-14581735 | None:intergenic | 40.0% |
| !! | CACTTGCAATAAGAAGCACT+GGG | + | chr1.4:14581909-14581928 | MS.gene31861:CDS | 40.0% |
| !! | CCTTAGAGAGCATTTCAATG+GGG | + | chr1.4:14582316-14582335 | MS.gene31861:intron | 40.0% |
| !! | CTTAGAGAGCATTTCAATGG+GGG | + | chr1.4:14582317-14582336 | MS.gene31861:intron | 40.0% |
| !! | TGGTTTGGTTGTGAAGGATT+GGG | + | chr1.4:14582413-14582432 | MS.gene31861:intron | 40.0% |
| !! | TTCAACCCTCTAAGCATTGA+GGG | + | chr1.4:14581943-14581962 | MS.gene31861:CDS | 40.0% |
| !! | TTGGTTTGGTTGTGAAGGAT+TGG | + | chr1.4:14582412-14582431 | MS.gene31861:intron | 40.0% |
| AAAGGGTAGACACTCATGCA+TGG | + | chr1.4:14581978-14581997 | MS.gene31861:CDS | 45.0% | |
| ATTCTAAGCCACCCTTCAAC+GGG | + | chr1.4:14582261-14582280 | MS.gene31861:intron | 45.0% | |
| CCCCATTGAAATGCTCTCTA+AGG | - | chr1.4:14582319-14582338 | None:intergenic | 45.0% | |
| CTCAATGCTTAGAGGGTTGA+AGG | - | chr1.4:14581944-14581963 | None:intergenic | 45.0% | |
| CTCTTCCATTTGGGAGAGAA+TGG | + | chr1.4:14581708-14581727 | MS.gene31861:CDS | 45.0% | |
| GGAGGGTTTATGAGTCATTG+TGG | + | chr1.4:14582282-14582301 | MS.gene31861:intron | 45.0% | |
| GGTGGCTTAGAATTTCCAAC+TGG | - | chr1.4:14582254-14582273 | None:intergenic | 45.0% | |
| GTAGACACTCATGCATGGAA+TGG | + | chr1.4:14581983-14582002 | MS.gene31861:CDS | 45.0% | |
| GTTGGTACGTCAATGGATGA+AGG | + | chr1.4:14582549-14582568 | MS.gene31861:CDS | 45.0% | |
| TACAATTCGTGGCCAAGGTT+CGG | + | chr1.4:14581387-14581406 | MS.gene31861:CDS | 45.0% | |
| TCATAAACCCTCCCGTTGAA+GGG | - | chr1.4:14582275-14582294 | None:intergenic | 45.0% | |
| TCTTCCCCTCAATGCTTAGA+GGG | - | chr1.4:14581951-14581970 | None:intergenic | 45.0% | |
| TGAAGGTGGAGTTTCTCGTA+TGG | + | chr1.4:14582566-14582585 | MS.gene31861:CDS | 45.0% | |
| TTCTTCCCCTCAATGCTTAG+AGG | - | chr1.4:14581952-14581971 | None:intergenic | 45.0% | |
| TTGGGAGGAGGTGAAACAAA+GGG | - | chr1.4:14581466-14581485 | None:intergenic | 45.0% | |
| ! | CTTCAACCCTCTAAGCATTG+AGG | + | chr1.4:14581942-14581961 | MS.gene31861:CDS | 45.0% |
| ! | GTGAAGCATCCTTCCATAGA+AGG | - | chr1.4:14581772-14581791 | None:intergenic | 45.0% |
| !! | AAGGAATGGGCTTTGTTGTG+AGG | + | chr1.4:14582217-14582236 | MS.gene31861:intron | 45.0% |
| !! | AATAAGAAGCACTGGGCAGT+GGG | + | chr1.4:14581916-14581935 | MS.gene31861:CDS | 45.0% |
| !! | AGGAATGGGCTTTGTTGTGA+GGG | + | chr1.4:14582218-14582237 | MS.gene31861:intron | 45.0% |
| !! | AGGTTGATGGAGACAATGGA+AGG | + | chr1.4:14582486-14582505 | MS.gene31861:CDS | 45.0% |
| !! | GAAGTCCCAACATAATGGAC+AGG | - | chr1.4:14581349-14581368 | None:intergenic | 45.0% |
| !! | GATTCAAATGGCCTTGTGCT+GGG | - | chr1.4:14581285-14581304 | None:intergenic | 45.0% |
| !! | TCAACCCTCTAAGCATTGAG+GGG | + | chr1.4:14581944-14581963 | MS.gene31861:CDS | 45.0% |
| !! | TGATTCAAATGGCCTTGTGC+TGG | - | chr1.4:14581286-14581305 | None:intergenic | 45.0% |
| AGGCTCGCGAAGATGTAAAG+AGG | - | chr1.4:14581539-14581558 | None:intergenic | 50.0% | |
| ATGGTACCTTTCCCAGCACA+AGG | + | chr1.4:14581271-14581290 | MS.gene31861:CDS | 50.0% | |
| CAAGCTACAATTCGTGGCCA+AGG | + | chr1.4:14581382-14581401 | MS.gene31861:CDS | 50.0% | |
| CTCATAAACCCTCCCGTTGA+AGG | - | chr1.4:14582276-14582295 | None:intergenic | 50.0% | |
| GGTACGTCAATGGATGAAGG+TGG | + | chr1.4:14582552-14582571 | MS.gene31861:CDS | 50.0% | |
| GTTGGGAGGAGGTGAAACAA+AGG | - | chr1.4:14581467-14581486 | None:intergenic | 50.0% | |
| TGCATAGGCCATGCTGCTAT+TGG | - | chr1.4:14582345-14582364 | None:intergenic | 50.0% | |
| TGGAGTTTGGATCCGAACCT+TGG | - | chr1.4:14581402-14581421 | None:intergenic | 50.0% | |
| TTTACATCTTCGCGAGCCTG+TGG | + | chr1.4:14581540-14581559 | MS.gene31861:CDS | 50.0% | |
| ! | CTTGGCTGGTCAGAATGCAT+AGG | - | chr1.4:14582360-14582379 | None:intergenic | 50.0% |
| !! | AAATGGCCTTGTGCTGGGAA+AGG | - | chr1.4:14581280-14581299 | None:intergenic | 50.0% |
| !! | ATAAGAAGCACTGGGCAGTG+GGG | + | chr1.4:14581917-14581936 | MS.gene31861:CDS | 50.0% |
| !! | CAATAAGAAGCACTGGGCAG+TGG | + | chr1.4:14581915-14581934 | MS.gene31861:CDS | 50.0% |
| !! | GGGCTTTGTTGTGAGGGATT+GGG | + | chr1.4:14582224-14582243 | MS.gene31861:intron | 50.0% |
| !! | GTTTCTGCATTTGGGTTGGG+AGG | - | chr1.4:14581481-14581500 | None:intergenic | 50.0% |
| !! | TGGGCTTTGTTGTGAGGGAT+TGG | + | chr1.4:14582223-14582242 | MS.gene31861:intron | 50.0% |
| GATTGCATGAGTTCCGCCAC+AGG | - | chr1.4:14581559-14581578 | None:intergenic | 55.0% | |
| GGAGGAGGTGAAACAAAGGG+AGG | - | chr1.4:14581463-14581482 | None:intergenic | 55.0% | |
| TAAACCCTCCCGTTGAAGGG+TGG | - | chr1.4:14582272-14582291 | None:intergenic | 55.0% | |
| TAAGCCACCCTTCAACGGGA+GGG | + | chr1.4:14582265-14582284 | MS.gene31861:intron | 55.0% | |
| !! | TCTGCATTTGGGTTGGGAGG+AGG | - | chr1.4:14581478-14581497 | None:intergenic | 55.0% |
| ACATCTTCGCGAGCCTGTGG+CGG | + | chr1.4:14581543-14581562 | MS.gene31861:CDS | 60.0% | |
| CTAAGCCACCCTTCAACGGG+AGG | + | chr1.4:14582264-14582283 | MS.gene31861:intron | 60.0% | |
| !! | TGGGGGTGCCAATAGCAGCA+TGG | + | chr1.4:14582334-14582353 | MS.gene31861:intron | 60.0% |
| GAGGGATTGGGCACCCCAGT+TGG | + | chr1.4:14582236-14582255 | MS.gene31861:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 14581223 | 14582623 | 14581223 | ID=MS.gene31861 |
| chr1.4 | mRNA | 14581223 | 14582623 | 14581223 | ID=MS.gene31861.t1;Parent=MS.gene31861 |
| chr1.4 | exon | 14581223 | 14582038 | 14581223 | ID=MS.gene31861.t1.exon1;Parent=MS.gene31861.t1 |
| chr1.4 | CDS | 14581223 | 14582038 | 14581223 | ID=cds.MS.gene31861.t1;Parent=MS.gene31861.t1 |
| chr1.4 | exon | 14582429 | 14582623 | 14582429 | ID=MS.gene31861.t1.exon2;Parent=MS.gene31861.t1 |
| chr1.4 | CDS | 14582429 | 14582623 | 14582429 | ID=cds.MS.gene31861.t1;Parent=MS.gene31861.t1 |
| Gene Sequence |
| Protein sequence |
