AlfalfaGEDB | MS.gene31861

M. sativa cultivar XinJiangDaYe / MS.gene31861

KEGG: K13495
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31861.t1	XP_013466442.1	64.5	467	29	3	1	336	1	461	9.60E-153	549.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31861.t1	P56725	43.3	460	121	5	8	336	4	454	2.1e-92	340.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31861.t1	A0A072VGD7	64.5	467	29	3	1	336	1	461	6.9e-153	549.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051959	MS.gene31861	0.801611	8.30E-49	-1.69E-46
MS.gene051960	MS.gene31861	0.802765	4.80E-49	-1.69E-46
MS.gene052053	MS.gene31861	0.866322	3.10E-65	-1.69E-46
MS.gene052570	MS.gene31861	0.817663	2.93E-52	-1.69E-46
MS.gene053932	MS.gene31861	0.830931	2.22E-55	-1.69E-46
MS.gene055549	MS.gene31861	0.852757	3.74E-61	-1.69E-46
MS.gene055550	MS.gene31861	0.858578	7.48E-63	-1.69E-46
MS.gene055551	MS.gene31861	0.828195	1.03E-54	-1.69E-46
MS.gene056311	MS.gene31861	0.801863	7.36E-49	-1.69E-46
MS.gene056365	MS.gene31861	0.837205	5.96E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31861.t1	MTR_1g029540	89.011	273	23	2	1	272	1	267	5.09e-175	493
MS.gene31861.t1	MTR_1g029540	88.060	67	8	0	270	336	395	461	1.65e-31	123
MS.gene31861.t1	MTR_4g008630	82.721	272	45	1	1	272	1	270	4.27e-155	443
MS.gene31861.t1	MTR_4g008630	85.075	67	10	0	270	336	398	464	5.74e-31	122
MS.gene31861.t1	MTR_8g090095	63.396	265	94	3	10	272	21	284	1.31e-112	335
MS.gene31861.t1	MTR_8g090095	67.164	67	22	0	270	336	415	481	4.26e-22	97.1
MS.gene31861.t1	MTR_5g087620	25.625	320	192	12	15	296	11	322	2.20e-13	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 79 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGTGGTGATTGTTA+TGG	0.444236	1.4:+14581252	MS.gene31861:CDS
AAAGACGGAACCATATGAGA+AGG	0.610573	1.4:-14581508	None:intergenic
AAAGGGTAGACACTCATGCA+TGG	0.602471	1.4:+14581978	MS.gene31861:CDS
AAATGGCCTTGTGCTGGGAA+AGG	0.563121	1.4:-14581277	None:intergenic
AAATGTTGTTGGTACGTCAA+TGG	0.466486	1.4:+14582542	MS.gene31861:CDS
AACATACCTGTCCATTATGT+TGG	0.450291	1.4:+14581340	MS.gene31861:CDS
AACTAAATTTCCTTCTCATA+TGG	0.340746	1.4:+14581498	MS.gene31861:CDS
AATAAGAAGCACTGGGCAGT+GGG	0.521320	1.4:+14581916	MS.gene31861:CDS
AATACAAGCAGAGTAATCGA+AGG	0.676316	1.4:+14581859	MS.gene31861:CDS
AATCGTCAAGCTACAATTCG+TGG	0.533085	1.4:+14581376	MS.gene31861:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGGTGAACTTTCAAA+AGG	+	chr1.4:14582177-14582196	MS.gene31861:intron	30.0%
AAAGAGGTGAACTTTCAAAA+GGG	+	chr1.4:14582178-14582197	MS.gene31861:intron	30.0%
CAAATTGAACAGATTGGAAT+TGG	+	chr1.4:14582075-14582094	MS.gene31861:intron	30.0%
GAATGTTGTTAAAAGGTTGA+TGG	+	chr1.4:14582473-14582492	MS.gene31861:CDS	30.0%
GAATTCTGTGAATTCAGTAA+TGG	+	chr1.4:14581826-14581845	MS.gene31861:CDS	30.0%
GATAAAAATGAAGGGAAAAG+AGG	+	chr1.4:14582162-14582181	MS.gene31861:intron	30.0%
TATCATTGATGTTCCTTCTA+TGG	+	chr1.4:14581756-14581775	MS.gene31861:CDS	30.0%
AAACCAAGTGGTGATTGTTA+TGG	+	chr1.4:14581252-14581271	MS.gene31861:CDS	35.0%
AAATGTTGTTGGTACGTCAA+TGG	+	chr1.4:14582542-14582561	MS.gene31861:CDS	35.0%
AACATACCTGTCCATTATGT+TGG	+	chr1.4:14581340-14581359	MS.gene31861:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	14581223	14582623	14581223	ID=MS.gene31861
chr1.4	mRNA	14581223	14582623	14581223	ID=MS.gene31861.t1;Parent=MS.gene31861
chr1.4	exon	14581223	14582038	14581223	ID=MS.gene31861.t1.exon1;Parent=MS.gene31861.t1
chr1.4	CDS	14581223	14582038	14581223	ID=cds.MS.gene31861.t1;Parent=MS.gene31861.t1
chr1.4	exon	14582429	14582623	14582429	ID=MS.gene31861.t1.exon2;Parent=MS.gene31861.t1
chr1.4	CDS	14582429	14582623	14582429	ID=cds.MS.gene31861.t1;Parent=MS.gene31861.t1

Gene Sequence

>MS.gene31861

ATGGCTTCCAATGGCCAAAGCAATTCCAAAAACCAAGTGGTGATTGTTATGGTACCTTTCCCAGCACAAGGCCATTTGAATCAGCTTCTACACCTCTCACGCTTAATCTTATCACACAACATACCTGTCCATTATGTTGGGACTTCTATACACAATCGTCAAGCTACAATTCGTGGCCAAGGTTCGGATCCAAACTCCATTTCAATCTCAAACATCCATTTTCATCACTTCGAAGTTCCTCCCTTTGTTTCACCTCCTCCCAACCCAAATGCAGAAACTAAATTTCCTTCTCATATGGTTCCGTCTTTTGAAGCCTCTTTACATCTTCGCGAGCCTGTGGCGGAACTCATGCAATCACTTTCATCTGTTTTCAAAAGGGTCGTTGTAATTCATGACACTTTTATGGCATCAGTGGTACAAGATGCTATAAACATAGCAAATGTTGAGAATTACACATTTGTCAGCACATGTGCTTTTACAGTTTTCTCTTCCATTTGGGAGAGAATGGGAAAAACTCCAATTGAAAGCTGGCATATCATTGATGTTCCTTCTATGGAAGGATGCTTCACAAACCAATTCGTTGATTTCATGATGGCTCAAAAGGAATTCTGTGAATTCAGTAATGGGAGCATATACAATACAAGCAGAGTAATCGAAGGTCCTTACTTGGAGTTGATAGAGAAAATCACTTGCAATAAGAAGCACTGGGCAGTGGGGCCCTTCAACCCTCTAAGCATTGAGGGGAAGAAAGATTCAAAGGGTAGACACTCATGCATGGAATGGCTTGATGAACAAGAAACAAACTCAGTTATATATGTATCTTTTGGAACAACAACAACCTTGACAGAGGAACAAATTGAACAGATTGGAATTGGGTTGAAACAAAGCAAGATAAAGTTTATTTGGGTGTTGAGAGATGCTGATAAAGGAGACATCTTTGATAAAAATGAAGGGAAAAGAGGTGAACTTTCAAAAGGGTTTGAAGAGAGAATTGAAGGAATGGGCTTTGTTGTGAGGGATTGGGCACCCCAGTTGGAAATTCTAAGCCACCCTTCAACGGGAGGGTTTATGAGTCATTGTGGATGGAACTCTACCTTAGAGAGCATTTCAATGGGGGTGCCAATAGCAGCATGGCCTATGCATTCTGACCAGCCAAGAAACAGTGTTTTGATAACACAAGTGTTAAAGATTGGTTTGGTTGTGAAGGATTGGGCTAAAAGACATGAATTGGTTACTGCTTCAGATATTGGGAATGTTGTTAAAAGGTTGATGGAGACAATGGAAGGTGATGAAATGCGAGAGAGAGCGATAAAACTTAAAAATGTTGTTGGTACGTCAATGGATGAAGGTGGAGTTTCTCGTATGGAAATGGATTCTTTCATCGCTCATATTACTAGATAG

Protein sequence

>MS.gene31861.t1

MASNGQSNSKNQVVIVMVPFPAQGHLNQLLHLSRLILSHNIPVHYVGTSIHNRQATIRGQGSDPNSISISNIHFHHFEVPPFVSPPPNPNAETKFPSHMVPSFEASLHLREPVAELMQSLSSVFKRVVVIHDTFMASVVQDAINIANVENYTFVSTCAFTVFSSIWERMGKTPIESWHIIDVPSMEGCFTNQFVDFMMAQKEFCEFSNGSIYNTSRVIEGPYLELIEKITCNKKHWAVGPFNPLSIEGKKDSKGRHSCMEWLDEQETNSVIYDWAKRHELVTASDIGNVVKRLMETMEGDEMRERAIKLKNVVGTSMDEGGVSRMEMDSFIAHITR