Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32093.t1 | ACJ85460.1 | 100 | 157 | 0 | 0 | 1 | 157 | 47 | 203 | 1.00E-80 | 309.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32093.t1 | Q93VI4 | 81.6 | 158 | 27 | 2 | 1 | 157 | 57 | 213 | 3.1e-65 | 249.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32093.t1 | B7FL26 | 100.0 | 157 | 0 | 0 | 1 | 157 | 47 | 203 | 7.6e-81 | 309.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene32093 | 0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene32093 | 0.834206 | 3.43E-56 | -1.69E-46 |
| MS.gene050114 | MS.gene32093 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene050317 | MS.gene32093 | 0.80986 | 1.54E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene32093 | 0.80117 | 1.02E-48 | -1.69E-46 |
| MS.gene053058 | MS.gene32093 | 0.834267 | 3.31E-56 | -1.69E-46 |
| MS.gene056097 | MS.gene32093 | 0.803652 | 3.15E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene32093 | 0.801411 | 9.12E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene32093 | 0.803582 | 3.25E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene32093 | 0.821156 | 4.69E-53 | -1.69E-46 |
| MS.gene058638 | MS.gene32093 | 0.804108 | 2.53E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene32093 | 0.815298 | 9.93E-52 | -1.69E-46 |
| MS.gene059007 | MS.gene32093 | 0.802028 | 6.81E-49 | -1.69E-46 |
| MS.gene060465 | MS.gene32093 | 0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene060702 | MS.gene32093 | 0.802136 | 6.47E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32093.t1 | MTR_1g073000 | 100.000 | 141 | 0 | 0 | 1 | 141 | 47 | 187 | 2.67e-102 | 291 |
| MS.gene32093.t1 | MTR_4g094260 | 79.592 | 147 | 25 | 2 | 1 | 142 | 21 | 167 | 6.25e-82 | 240 |
| MS.gene32093.t1 | MTR_8g089990 | 72.393 | 163 | 37 | 2 | 1 | 157 | 41 | 201 | 4.55e-81 | 239 |
| MS.gene32093.t1 | MTR_1g069140 | 67.361 | 144 | 46 | 1 | 12 | 155 | 125 | 267 | 1.10e-61 | 192 |
| MS.gene32093.t1 | MTR_1g069140 | 67.361 | 144 | 46 | 1 | 12 | 155 | 134 | 276 | 1.79e-61 | 191 |
| MS.gene32093.t1 | MTR_1g049070 | 61.538 | 104 | 33 | 1 | 43 | 146 | 24 | 120 | 4.51e-41 | 135 |
| MS.gene32093.t1 | MTR_3g028140 | 36.747 | 166 | 93 | 6 | 2 | 157 | 459 | 622 | 5.17e-20 | 86.3 |
| MS.gene32093.t1 | MTR_3g028140 | 38.710 | 124 | 69 | 2 | 2 | 118 | 459 | 582 | 6.11e-18 | 80.1 |
| MS.gene32093.t1 | MTR_8g037000 | 37.097 | 124 | 67 | 4 | 34 | 151 | 624 | 742 | 2.45e-15 | 72.8 |
| MS.gene32093.t1 | MTR_4g074930 | 34.568 | 81 | 53 | 0 | 43 | 123 | 336 | 416 | 2.29e-11 | 61.2 |
| MS.gene32093.t1 | MTR_4g074930 | 34.568 | 81 | 53 | 0 | 43 | 123 | 324 | 404 | 2.37e-11 | 61.2 |
| MS.gene32093.t1 | MTR_4g074930 | 34.568 | 81 | 53 | 0 | 43 | 123 | 371 | 451 | 2.73e-11 | 60.8 |
| MS.gene32093.t1 | MTR_4g074930 | 34.568 | 81 | 53 | 0 | 43 | 123 | 359 | 439 | 2.88e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32093.t1 | AT5G51120 | 81.646 | 158 | 27 | 2 | 1 | 157 | 57 | 213 | 2.86e-89 | 260 |
| MS.gene32093.t1 | AT5G10350 | 77.640 | 161 | 32 | 3 | 1 | 157 | 42 | 202 | 1.66e-85 | 249 |
| MS.gene32093.t1 | AT5G10350 | 77.640 | 161 | 32 | 3 | 1 | 157 | 42 | 202 | 4.40e-85 | 249 |
| MS.gene32093.t1 | AT5G65260 | 77.019 | 161 | 32 | 3 | 1 | 157 | 46 | 205 | 1.68e-82 | 243 |
| MS.gene32093.t1 | AT5G51120 | 65.128 | 195 | 30 | 2 | 1 | 157 | 57 | 251 | 5.41e-81 | 240 |
| MS.gene32093.t1 | AT5G51120 | 81.600 | 125 | 22 | 1 | 34 | 157 | 4 | 128 | 7.40e-71 | 210 |
| MS.gene32093.t1 | AT5G10350 | 72.840 | 81 | 18 | 3 | 81 | 157 | 1 | 81 | 2.20e-32 | 111 |
| MS.gene32093.t1 | AT5G10350 | 72.840 | 81 | 18 | 3 | 81 | 157 | 1 | 81 | 2.20e-32 | 111 |
| MS.gene32093.t1 | AT5G10350 | 72.840 | 81 | 18 | 3 | 81 | 157 | 1 | 81 | 2.20e-32 | 111 |
| MS.gene32093.t1 | AT5G10350 | 72.840 | 81 | 18 | 3 | 81 | 157 | 1 | 81 | 2.20e-32 | 111 |
| MS.gene32093.t1 | AT3G12640 | 39.744 | 78 | 46 | 1 | 43 | 119 | 475 | 552 | 8.67e-13 | 65.5 |
| MS.gene32093.t1 | AT3G12640 | 39.744 | 78 | 46 | 1 | 43 | 119 | 499 | 576 | 9.98e-13 | 65.1 |
| MS.gene32093.t1 | AT3G12640 | 39.744 | 78 | 46 | 1 | 43 | 119 | 499 | 576 | 9.98e-13 | 65.1 |
| MS.gene32093.t1 | AT3G12640 | 30.827 | 133 | 81 | 2 | 20 | 141 | 444 | 576 | 2.08e-11 | 61.2 |
Find 36 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATATTGACAGACAAATT+TGG | 0.277446 | 1.2:+55760067 | MS.gene32093:CDS |
| AAATGCTGTTGGACTTCTTC+AGG | 0.339186 | 1.2:-55760016 | None:intergenic |
| TCTTTCCACCATATGCTTAC+GGG | 0.386901 | 1.2:+55760370 | MS.gene32093:CDS |
| GCAAAACGTACAAATGTTCC+TGG | 0.402106 | 1.2:+55760282 | MS.gene32093:CDS |
| TTCTTTCCACCATATGCTTA+CGG | 0.403589 | 1.2:+55760369 | MS.gene32093:CDS |
| TCTACATAAGCAAATCCTTT+CGG | 0.404767 | 1.2:-55760094 | None:intergenic |
| TTCTGTATCTCAAGCTGAAA+AGG | 0.437005 | 1.2:+55757988 | MS.gene32093:CDS |
| CTTCCGTACTGCTTCAATCC+AGG | 0.447125 | 1.2:-55760300 | None:intergenic |
| AAAGAGATGGGCGCTGTTCA+AGG | 0.456481 | 1.2:+55757815 | MS.gene32093:CDS |
| TCAAGCTGAAAAGGAGGAAG+TGG | 0.486267 | 1.2:+55757997 | MS.gene32093:CDS |
| CTCCTACCGCGGAAACCAGC+AGG | 0.495710 | 1.2:-55760327 | None:intergenic |
| ATAGCTTACCCGTAAGCATA+TGG | 0.502661 | 1.2:-55760378 | None:intergenic |
| TTAAATGAAACTGAATTGCA+TGG | 0.518323 | 1.2:+55760154 | MS.gene32093:CDS |
| CTTAGCTTGCATTTCGCGAA+GGG | 0.518987 | 1.2:-55757786 | None:intergenic |
| AAGAATGGTGCAGGCATGAA+AGG | 0.522900 | 1.2:-55760351 | None:intergenic |
| TAAGCATATGGTGGAAAGAA+TGG | 0.526698 | 1.2:-55760366 | None:intergenic |
| CACAGGACTGAAAATGCTGT+TGG | 0.529319 | 1.2:-55760027 | None:intergenic |
| GACAAATTTGGTCAACCGAA+AGG | 0.538920 | 1.2:+55760079 | MS.gene32093:CDS |
| TATGGTGGAAAGAATGGTGC+AGG | 0.545682 | 1.2:-55760360 | None:intergenic |
| GACTCTGTTCACAGTACCAC+AGG | 0.550448 | 1.2:-55760044 | None:intergenic |
| ATTGCATGGCCGACAGCTGA+AGG | 0.563098 | 1.2:+55760168 | MS.gene32093:CDS |
| CAGTACGGAAGAAGACCTGC+TGG | 0.568352 | 1.2:+55760312 | MS.gene32093:CDS |
| GACCTGCTGGTTTCCGCGGT+AGG | 0.572954 | 1.2:+55760325 | MS.gene32093:CDS |
| AGCTAAGGTTGAGAAAGAGA+TGG | 0.576917 | 1.2:+55757802 | MS.gene32093:CDS |
| CCTTCGCGAAATGCAAGCTA+AGG | 0.583813 | 1.2:+55757787 | MS.gene32093:CDS |
| GCTAAGGTTGAGAAAGAGAT+GGG | 0.591216 | 1.2:+55757803 | MS.gene32093:CDS |
| CCTTAGCTTGCATTTCGCGA+AGG | 0.593805 | 1.2:-55757787 | None:intergenic |
| GCATGAAAGGTCTCCTACCG+CGG | 0.602974 | 1.2:-55760338 | None:intergenic |
| GTTCCTGGATTGAAGCAGTA+CGG | 0.610328 | 1.2:+55760297 | MS.gene32093:CDS |
| TGTATCTCAAGCTGAAAAGG+AGG | 0.614985 | 1.2:+55757991 | MS.gene32093:CDS |
| TGAGATACAGAAGACCCAGC+AGG | 0.620132 | 1.2:-55757977 | None:intergenic |
| AATTGGAGGATATGAAGAAG+AGG | 0.623414 | 1.2:+55757735 | None:intergenic |
| AGAAGACCTGCTGGTTTCCG+CGG | 0.627211 | 1.2:+55760321 | MS.gene32093:CDS |
| GATGCTCGATCGATCTATGT+CGG | 0.643135 | 1.2:+55758019 | MS.gene32093:CDS |
| GCTTACCCGTAAGCATATGG+TGG | 0.644904 | 1.2:-55760375 | None:intergenic |
| GAAGAGGCTGAAAGAGATCG+AGG | 0.648698 | 1.2:+55757751 | MS.gene32093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAACATGTAAAAATT+TGG | - | chr1.2:55759488-55759507 | None:intergenic | 10.0% |
| !! | TTAATCATAAATAAAATCAA+AGG | - | chr1.2:55758063-55758082 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTAAAAAAATGGA+AGG | - | chr1.2:55758851-55758870 | None:intergenic | 10.0% |
| !! | AATTTAATGTTTGGATTATT+GGG | + | chr1.2:55758286-55758305 | MS.gene32093:intron | 15.0% |
| !! | ATAATTCAATTAAAACCAAA+TGG | - | chr1.2:55760242-55760261 | None:intergenic | 15.0% |
| !! | GTTATATATATGTTAACAAA+TGG | - | chr1.2:55759301-55759320 | None:intergenic | 15.0% |
| !! | TGATATTTAAATAAAACTAG+TGG | + | chr1.2:55760544-55760563 | MS.gene32093:intron | 15.0% |
| !! | TTTAAAAAATTTGGATGATA+TGG | - | chr1.2:55759442-55759461 | None:intergenic | 15.0% |
| !!! | AATGCTGATTTAATTTTTTT+TGG | + | chr1.2:55758337-55758356 | MS.gene32093:intron | 15.0% |
| !!! | ATATTTACTTTTTGTGTAAA+TGG | + | chr1.2:55760503-55760522 | MS.gene32093:intron | 15.0% |
| !!! | ATGCTGATTTAATTTTTTTT+GGG | + | chr1.2:55758338-55758357 | MS.gene32093:intron | 15.0% |
| !!! | ATTTGGTTTTAATTGAATTA+TGG | + | chr1.2:55760241-55760260 | MS.gene32093:intron | 15.0% |
| !!! | TAGATAGATCTAAAATTATA+TGG | + | chr1.2:55759682-55759701 | MS.gene32093:intron | 15.0% |
| !! | AAAACTGTATATATACTTGT+TGG | - | chr1.2:55760758-55760777 | None:intergenic | 20.0% |
| !! | AAATTAATGAAAAGTGAAAC+AGG | - | chr1.2:55758755-55758774 | None:intergenic | 20.0% |
| !! | AACATATATATAACCCAAAA+TGG | + | chr1.2:55759307-55759326 | MS.gene32093:intron | 20.0% |
| !! | ATTTAAATAAAACTAGTGGA+TGG | + | chr1.2:55760548-55760567 | MS.gene32093:intron | 20.0% |
| !! | CTATTTAACAACACTTAATT+CGG | - | chr1.2:55759103-55759122 | None:intergenic | 20.0% |
| !! | GAATTTAATGTTTGGATTAT+TGG | + | chr1.2:55758285-55758304 | MS.gene32093:intron | 20.0% |
| !! | TAGGTTAAGAATTTAATGTT+TGG | + | chr1.2:55758277-55758296 | MS.gene32093:intron | 20.0% |
| !! | TATGAAAGATTATGAAATAG+CGG | + | chr1.2:55759199-55759218 | MS.gene32093:intron | 20.0% |
| !! | TATTTAACAACACTTAATTC+GGG | - | chr1.2:55759102-55759121 | None:intergenic | 20.0% |
| !!! | AAATGTCGATTTTGTTTTTT+TGG | + | chr1.2:55758475-55758494 | MS.gene32093:intron | 20.0% |
| !!! | AACAAGTATATATACAGTTT+TGG | + | chr1.2:55760757-55760776 | MS.gene32093:intron | 20.0% |
| !!! | AATGTCGATTTTGTTTTTTT+GGG | + | chr1.2:55758476-55758495 | MS.gene32093:intron | 20.0% |
| !!! | AATGTTCTAAATTCTAATAG+AGG | - | chr1.2:55758598-55758617 | None:intergenic | 20.0% |
| !!! | AATTTTATTTTTAGAGTGTG+TGG | + | chr1.2:55758770-55758789 | MS.gene32093:intron | 20.0% |
| !!! | ATGTTCTAAATTCTAATAGA+GGG | - | chr1.2:55758597-55758616 | None:intergenic | 20.0% |
| !!! | CTATTAGAATTTAGAACATT+TGG | + | chr1.2:55758598-55758617 | MS.gene32093:intron | 20.0% |
| !!! | TAATTTTAGATCTATCTAGA+TGG | - | chr1.2:55759680-55759699 | None:intergenic | 20.0% |
| !!! | TGCTGATTTAATTTTTTTTG+GGG | + | chr1.2:55758339-55758358 | MS.gene32093:intron | 20.0% |
| !!! | TTTTAAGCACTAAATTTCAT+GGG | + | chr1.2:55759600-55759619 | MS.gene32093:intron | 20.0% |
| !!! | TTTTTGAGATTTAAATGACA+TGG | - | chr1.2:55759929-55759948 | None:intergenic | 20.0% |
| ! | ACAATATTGACAGACAAATT+TGG | + | chr1.2:55760067-55760086 | MS.gene32093:CDS | 25.0% |
| ! | ATTAAAACCAAATGGAAACA+TGG | - | chr1.2:55760234-55760253 | None:intergenic | 25.0% |
| ! | ATTCAGATCTGTTTATCATT+TGG | + | chr1.2:55757909-55757928 | MS.gene32093:intron | 25.0% |
| ! | CCATAACATTTACAAATGAT+CGG | - | chr1.2:55759520-55759539 | None:intergenic | 25.0% |
| ! | GAGTATACTAAAATAGTTAG+AGG | + | chr1.2:55759622-55759641 | MS.gene32093:intron | 25.0% |
| ! | GTATAACCAAAAACTACATA+GGG | + | chr1.2:55760720-55760739 | MS.gene32093:intron | 25.0% |
| ! | TGTATAACCAAAAACTACAT+AGG | + | chr1.2:55760719-55760738 | MS.gene32093:intron | 25.0% |
| ! | TTAAATGAAACTGAATTGCA+TGG | + | chr1.2:55760154-55760173 | MS.gene32093:CDS | 25.0% |
| !! | ATTAAGTCAGACATATTTTC+AGG | - | chr1.2:55759412-55759431 | None:intergenic | 25.0% |
| !! | CTTTTAAGCACTAAATTTCA+TGG | + | chr1.2:55759599-55759618 | MS.gene32093:intron | 25.0% |
| !! | TGTTCTAAATTCTAATAGAG+GGG | - | chr1.2:55758596-55758615 | None:intergenic | 25.0% |
| !! | TTATCATTTGGCTCAATTAT+TGG | + | chr1.2:55757921-55757940 | MS.gene32093:intron | 25.0% |
| !! | TTGCTTACAGTTTGAATTTT+AGG | + | chr1.2:55758258-55758277 | MS.gene32093:intron | 25.0% |
| !!! | CCAAATTTTTTAAAATACCC+AGG | + | chr1.2:55759448-55759467 | MS.gene32093:intron | 25.0% |
| !!! | CCTGGGTATTTTAAAAAATT+TGG | - | chr1.2:55759451-55759470 | None:intergenic | 25.0% |
| !!! | GCTGATTTAATTTTTTTTGG+GGG | + | chr1.2:55758340-55758359 | MS.gene32093:intron | 25.0% |
| !!! | TGGTTTCTAAAATATGAATC+AGG | + | chr1.2:55759976-55759995 | MS.gene32093:intron | 25.0% |
| AAAAATGCATTAGACATGTG+CGG | - | chr1.2:55759884-55759903 | None:intergenic | 30.0% | |
| AAATTTGGATGATATGGATC+TGG | - | chr1.2:55759436-55759455 | None:intergenic | 30.0% | |
| AATGTTTGGATTATTGGGAT+GGG | + | chr1.2:55758291-55758310 | MS.gene32093:intron | 30.0% | |
| ACTAAAATAGTTAGAGGAAG+AGG | + | chr1.2:55759628-55759647 | MS.gene32093:intron | 30.0% | |
| AGATGCCAAAATTTACACAT+TGG | - | chr1.2:55760471-55760490 | None:intergenic | 30.0% | |
| AGGAAAACAAACTAATGCTA+GGG | - | chr1.2:55759039-55759058 | None:intergenic | 30.0% | |
| ATAAAAATACCTTCAGCTGT+CGG | - | chr1.2:55760180-55760199 | None:intergenic | 30.0% | |
| ATAGCAATACATCTGATGAT+AGG | + | chr1.2:55760584-55760603 | MS.gene32093:intron | 30.0% | |
| ATATGGCCTATCTGTATTTA+TGG | + | chr1.2:55759699-55759718 | MS.gene32093:intron | 30.0% | |
| CAAAAGCAACAATGAATTCT+AGG | - | chr1.2:55760434-55760453 | None:intergenic | 30.0% | |
| CCGATCATTTGTAAATGTTA+TGG | + | chr1.2:55759517-55759536 | MS.gene32093:intron | 30.0% | |
| CTAAAATAGTTAGAGGAAGA+GGG | + | chr1.2:55759629-55759648 | MS.gene32093:intron | 30.0% | |
| GGAAACTAAAACACCTTTAA+AGG | - | chr1.2:55759018-55759037 | None:intergenic | 30.0% | |
| GGTAATTTAGAAATTGAGCA+TGG | + | chr1.2:55758943-55758962 | MS.gene32093:intron | 30.0% | |
| GTTGTTAAATAGCAGTATAG+CGG | + | chr1.2:55759111-55759130 | MS.gene32093:intron | 30.0% | |
| TAATGTTTGGATTATTGGGA+TGG | + | chr1.2:55758290-55758309 | MS.gene32093:intron | 30.0% | |
| TATGGTAAACTTCTCATAAC+TGG | + | chr1.2:55759535-55759554 | MS.gene32093:intron | 30.0% | |
| TCTACATAAGCAAATCCTTT+CGG | - | chr1.2:55760097-55760116 | None:intergenic | 30.0% | |
| TCTGATATCATGTCCTTTAA+AGG | + | chr1.2:55759002-55759021 | MS.gene32093:intron | 30.0% | |
| TGAAAACTAAAACTGCTTGT+CGG | - | chr1.2:55758449-55758468 | None:intergenic | 30.0% | |
| TGAGTGTTAATTCATCAAAC+TGG | + | chr1.2:55759956-55759975 | MS.gene32093:intron | 30.0% | |
| TTACAGATCGTAGAATATAG+CGG | - | chr1.2:55759265-55759284 | None:intergenic | 30.0% | |
| TTAGATCTATCTAGATGGTT+TGG | - | chr1.2:55759675-55759694 | None:intergenic | 30.0% | |
| TTAGCACCTATAAACTAGTT+TGG | + | chr1.2:55758714-55758733 | MS.gene32093:intron | 30.0% | |
| ! | ACTCAATTCTGCAATCTTTT+TGG | + | chr1.2:55758206-55758225 | MS.gene32093:intron | 30.0% |
| ! | AGCTTTATATAACTAGCCAT+AGG | - | chr1.2:55758695-55758714 | None:intergenic | 30.0% |
| ! | ATATAACCCAAAATGGACTT+CGG | + | chr1.2:55759314-55759333 | MS.gene32093:intron | 30.0% |
| ! | CCAATTCCAAACTAGTTTAT+AGG | - | chr1.2:55758723-55758742 | None:intergenic | 30.0% |
| ! | CCTATAAACTAGTTTGGAAT+TGG | + | chr1.2:55758720-55758739 | MS.gene32093:intron | 30.0% |
| ! | GACATCCAATGTGTAAATTT+TGG | + | chr1.2:55760463-55760482 | MS.gene32093:intron | 30.0% |
| ! | GACTTTTCAGAAACATGTTA+AGG | - | chr1.2:55758401-55758420 | None:intergenic | 30.0% |
| ! | TGAATTATGGTTTTTCCTTC+AGG | + | chr1.2:55760254-55760273 | MS.gene32093:intron | 30.0% |
| !! | ATATTTTCAGGATCACATTC+AGG | - | chr1.2:55759400-55759419 | None:intergenic | 30.0% |
| !!! | TATTTTTAGAGTGTGTGGAA+TGG | + | chr1.2:55758775-55758794 | MS.gene32093:intron | 30.0% |
| !!! | TTTTGATTTTAGATCCTGCT+GGG | + | chr1.2:55757963-55757982 | MS.gene32093:intron | 30.0% |
| !!! | TTTTTGATTTTAGATCCTGC+TGG | + | chr1.2:55757962-55757981 | MS.gene32093:intron | 30.0% |
| AAAACTAAAACTGCCTGTTG+GGG | - | chr1.2:55758624-55758643 | None:intergenic | 35.0% | |
| AAAACTAAAACTGCTTGTCG+GGG | - | chr1.2:55758447-55758466 | None:intergenic | 35.0% | |
| AAAATGCATTAGACATGTGC+GGG | - | chr1.2:55759883-55759902 | None:intergenic | 35.0% | |
| AATCACTCCATGTTTCCATT+TGG | + | chr1.2:55760224-55760243 | MS.gene32093:intron | 35.0% | |
| ATAAGAGCTACTAGACCATT+TGG | + | chr1.2:55759367-55759386 | MS.gene32093:intron | 35.0% | |
| ATTGATTGAACCAAAAACCC+TGG | + | chr1.2:55758658-55758677 | MS.gene32093:intron | 35.0% | |
| CAAAACTAAAACTGCCTGTT+GGG | - | chr1.2:55758625-55758644 | None:intergenic | 35.0% | |
| CAAAGATGCACCTAAAAACT+CGG | - | chr1.2:55758238-55758257 | None:intergenic | 35.0% | |
| CACCAAGTAGTTGAAAACAA+CGG | + | chr1.2:55758544-55758563 | MS.gene32093:intron | 35.0% | |
| CATGGACCATAAATACAGAT+AGG | - | chr1.2:55759708-55759727 | None:intergenic | 35.0% | |
| CATTCAGGTAATCAACCAAA+TGG | - | chr1.2:55759385-55759404 | None:intergenic | 35.0% | |
| CTATCTGTATTTATGGTCCA+TGG | + | chr1.2:55759706-55759725 | MS.gene32093:intron | 35.0% | |
| GAAAACTAAAACTGCTTGTC+GGG | - | chr1.2:55758448-55758467 | None:intergenic | 35.0% | |
| GAGGAAAACAAACTAATGCT+AGG | - | chr1.2:55759040-55759059 | None:intergenic | 35.0% | |
| GTTTGATTGATCCATGTAGT+CGG | + | chr1.2:55759743-55759762 | MS.gene32093:intron | 35.0% | |
| TAGAACGTTTAGGTGTATGA+TGG | + | chr1.2:55758158-55758177 | MS.gene32093:intron | 35.0% | |
| TCAAAACTAAAACTGCCTGT+TGG | - | chr1.2:55758626-55758645 | None:intergenic | 35.0% | |
| TGGTTTCTTACAAGTTACCT+GGG | - | chr1.2:55759468-55759487 | None:intergenic | 35.0% | |
| TTCTGTATCTCAAGCTGAAA+AGG | + | chr1.2:55757988-55758007 | MS.gene32093:CDS | 35.0% | |
| TTCTTTCCACCATATGCTTA+CGG | + | chr1.2:55760369-55760388 | MS.gene32093:CDS | 35.0% | |
| TTGGTTTCTTACAAGTTACC+TGG | - | chr1.2:55759469-55759488 | None:intergenic | 35.0% | |
| ! | AAAAGTGAAACAGGCTGTTT+TGG | - | chr1.2:55758746-55758765 | None:intergenic | 35.0% |
| ! | AATGGACTTCGGTTTCAATT+TGG | + | chr1.2:55759325-55759344 | MS.gene32093:intron | 35.0% |
| ! | AGGAAAGTATACAGAACATG+AGG | - | chr1.2:55760643-55760662 | None:intergenic | 35.0% |
| ! | ATGCATCCCTATGTAGTTTT+TGG | - | chr1.2:55760729-55760748 | None:intergenic | 35.0% |
| ! | ATTGAAACCGAAGTCCATTT+TGG | - | chr1.2:55759324-55759343 | None:intergenic | 35.0% |
| ! | CAATTCTGCAATCTTTTTGG+CGG | + | chr1.2:55758209-55758228 | MS.gene32093:intron | 35.0% |
| ! | GTTTGGCCTAAAGTTTTCTT+TGG | - | chr1.2:55759658-55759677 | None:intergenic | 35.0% |
| ! | TAAGCATATGGTGGAAAGAA+TGG | - | chr1.2:55760369-55760388 | None:intergenic | 35.0% |
| ! | TGTGTGTTCAAGATTGATTC+TGG | + | chr1.2:55759850-55759869 | MS.gene32093:intron | 35.0% |
| ! | TTGAAACCGAAGTCCATTTT+GGG | - | chr1.2:55759323-55759342 | None:intergenic | 35.0% |
| !! | AGTTTGTTTTCCTCTTGGAA+GGG | + | chr1.2:55759046-55759065 | MS.gene32093:intron | 35.0% |
| !! | TTTCAACTACTTGGTGCATA+TGG | - | chr1.2:55758540-55758559 | None:intergenic | 35.0% |
| !!! | ATTGAGCATGGTTTTGTCAA+AGG | + | chr1.2:55758955-55758974 | MS.gene32093:intron | 35.0% |
| !!! | GCATTAGTTTGTTTTCCTCT+TGG | + | chr1.2:55759041-55759060 | MS.gene32093:intron | 35.0% |
| !!! | TAGTTTGTTTTCCTCTTGGA+AGG | + | chr1.2:55759045-55759064 | MS.gene32093:intron | 35.0% |
| AAATGCTGTTGGACTTCTTC+AGG | - | chr1.2:55760019-55760038 | None:intergenic | 40.0% | |
| AAGCATTACCATGCAGTACA+GGG | - | chr1.2:55759582-55759601 | None:intergenic | 40.0% | |
| AGCTAAGGTTGAGAAAGAGA+TGG | + | chr1.2:55757802-55757821 | MS.gene32093:CDS | 40.0% | |
| AGTGCTCAAGTAGAACGTTT+AGG | + | chr1.2:55758148-55758167 | MS.gene32093:intron | 40.0% | |
| ATAGCTTACCCGTAAGCATA+TGG | - | chr1.2:55760381-55760400 | None:intergenic | 40.0% | |
| CATTAACAAGCACGCTTATG+TGG | - | chr1.2:55760613-55760632 | None:intergenic | 40.0% | |
| GACAAATTTGGTCAACCGAA+AGG | + | chr1.2:55760079-55760098 | MS.gene32093:CDS | 40.0% | |
| GCAAAACGTACAAATGTTCC+TGG | + | chr1.2:55760282-55760301 | MS.gene32093:CDS | 40.0% | |
| GCTAAGGTTGAGAAAGAGAT+GGG | + | chr1.2:55757803-55757822 | MS.gene32093:CDS | 40.0% | |
| GCTATAGCACTATTGCATAG+CGG | + | chr1.2:55759135-55759154 | MS.gene32093:intron | 40.0% | |
| GGGAGACCAAAGAAAACTTT+AGG | + | chr1.2:55759649-55759668 | MS.gene32093:intron | 40.0% | |
| TCTTTCCACCATATGCTTAC+GGG | + | chr1.2:55760370-55760389 | MS.gene32093:CDS | 40.0% | |
| TGCACGTGATTGACTAATAC+AGG | + | chr1.2:55758514-55758533 | MS.gene32093:intron | 40.0% | |
| TGTATCTCAAGCTGAAAAGG+AGG | + | chr1.2:55757991-55758010 | MS.gene32093:CDS | 40.0% | |
| TTATGGTCCATGGCAGAATA+TGG | + | chr1.2:55759716-55759735 | MS.gene32093:intron | 40.0% | |
| TTGAACCAAAAACCCTGGTA+TGG | + | chr1.2:55758663-55758682 | MS.gene32093:intron | 40.0% | |
| TTGGAAGGGACATGTTATCA+GGG | + | chr1.2:55759060-55759079 | MS.gene32093:intron | 40.0% | |
| TTGGATTATTGGGATGGGAT+GGG | + | chr1.2:55758296-55758315 | MS.gene32093:intron | 40.0% | |
| TTTGGATTATTGGGATGGGA+TGG | + | chr1.2:55758295-55758314 | MS.gene32093:intron | 40.0% | |
| ! | AAAGCATTACCATGCAGTAC+AGG | - | chr1.2:55759583-55759602 | None:intergenic | 40.0% |
| ! | CCTTGCAAGTGTACTTTTGT+GGG | + | chr1.2:55760660-55760679 | MS.gene32093:intron | 40.0% |
| ! | TCCTTGCAAGTGTACTTTTG+TGG | + | chr1.2:55760659-55760678 | MS.gene32093:intron | 40.0% |
| !! | GACCGTTGTTTTCAACTACT+TGG | - | chr1.2:55758549-55758568 | None:intergenic | 40.0% |
| !! | GGGCTGAATGTTCTAGAAAA+GGG | - | chr1.2:55758427-55758446 | None:intergenic | 40.0% |
| AACGACACCATATTCTGCCA+TGG | - | chr1.2:55759726-55759745 | None:intergenic | 45.0% | |
| AAGAATGGTGCAGGCATGAA+AGG | - | chr1.2:55760354-55760373 | None:intergenic | 45.0% | |
| ACCAAAAACCCTGGTATGGT+AGG | + | chr1.2:55758667-55758686 | MS.gene32093:intron | 45.0% | |
| AGTGTGTGGAATGGTTGAGA+TGG | + | chr1.2:55758784-55758803 | MS.gene32093:intron | 45.0% | |
| CACAGGACTGAAAATGCTGT+TGG | - | chr1.2:55760030-55760049 | None:intergenic | 45.0% | |
| CATAGGTACCTACCATACCA+GGG | - | chr1.2:55758678-55758697 | None:intergenic | 45.0% | |
| CTTGGAAGGGACATGTTATC+AGG | + | chr1.2:55759059-55759078 | MS.gene32093:intron | 45.0% | |
| GAATGGTTGAGATGGGAAAG+AGG | + | chr1.2:55758792-55758811 | MS.gene32093:intron | 45.0% | |
| GATAACATGTCCCTTCCAAG+AGG | - | chr1.2:55759059-55759078 | None:intergenic | 45.0% | |
| GATGCTCGATCGATCTATGT+CGG | + | chr1.2:55758019-55758038 | MS.gene32093:CDS | 45.0% | |
| GTACATGTAGCCAGTTGGTT+TGG | + | chr1.2:55758905-55758924 | MS.gene32093:intron | 45.0% | |
| GTGTGTGGAATGGTTGAGAT+GGG | + | chr1.2:55758785-55758804 | MS.gene32093:intron | 45.0% | |
| GTGTTGTACATGTAGCCAGT+TGG | + | chr1.2:55758900-55758919 | MS.gene32093:intron | 45.0% | |
| GTTCCTGGATTGAAGCAGTA+CGG | + | chr1.2:55760297-55760316 | MS.gene32093:CDS | 45.0% | |
| GTTGCGCTATAGCATTGTTG+CGG | + | chr1.2:55759227-55759246 | MS.gene32093:intron | 45.0% | |
| TCAAGCTGAAAAGGAGGAAG+TGG | + | chr1.2:55757997-55758016 | MS.gene32093:CDS | 45.0% | |
| TTAGAACATTTGGCCCCAAC+AGG | + | chr1.2:55758608-55758627 | MS.gene32093:intron | 45.0% | |
| ! | ACCTACCATACCAGGGTTTT+TGG | - | chr1.2:55758671-55758690 | None:intergenic | 45.0% |
| ! | CAACAGCATTTTCAGTCCTG+TGG | + | chr1.2:55760028-55760047 | MS.gene32093:CDS | 45.0% |
| ! | CAAGTGTACTTTTGTGGGCA+AGG | + | chr1.2:55760665-55760684 | MS.gene32093:intron | 45.0% |
| ! | CCCACAAAAGTACACTTGCA+AGG | - | chr1.2:55760663-55760682 | None:intergenic | 45.0% |
| ! | TACGTTTTGCAGACACCTGA+AGG | - | chr1.2:55760272-55760291 | None:intergenic | 45.0% |
| ! | TATGGTGGAAAGAATGGTGC+AGG | - | chr1.2:55760363-55760382 | None:intergenic | 45.0% |
| ! | TCAGTTAGTGTTGTTGCTGC+AGG | - | chr1.2:55760791-55760810 | None:intergenic | 45.0% |
| ! | TTGGCGGTTTCCGAGTTTTT+AGG | + | chr1.2:55758225-55758244 | MS.gene32093:intron | 45.0% |
| !! | CTTAGCTTGCATTTCGCGAA+GGG | - | chr1.2:55757789-55757808 | None:intergenic | 45.0% |
| !! | GGGGCTGAATGTTCTAGAAA+AGG | - | chr1.2:55758428-55758447 | None:intergenic | 45.0% |
| !! | TGTAGCCAGTTGGTTTGGTT+TGG | + | chr1.2:55758910-55758929 | MS.gene32093:intron | 45.0% |
| !!! | GATAATTTTTTTTAAAAAAA+TGG | - | chr1.2:55758855-55758874 | None:intergenic | 5.0% |
| ACCTTGCGGGGAAAAAGCTT+TGG | + | chr1.2:55759770-55759789 | MS.gene32093:intron | 50.0% | |
| ATGCAGTACAGGGCTGATGA+AGG | - | chr1.2:55759572-55759591 | None:intergenic | 50.0% | |
| CCATAGGTACCTACCATACC+AGG | - | chr1.2:55758679-55758698 | None:intergenic | 50.0% | |
| CCTGGTATGGTAGGTACCTA+TGG | + | chr1.2:55758676-55758695 | MS.gene32093:intron | 50.0% | |
| CCTTCGCGAAATGCAAGCTA+AGG | + | chr1.2:55757787-55757806 | MS.gene32093:CDS | 50.0% | |
| CTTCCGTACTGCTTCAATCC+AGG | - | chr1.2:55760303-55760322 | None:intergenic | 50.0% | |
| GAAGAGGCTGAAAGAGATCG+AGG | + | chr1.2:55757751-55757770 | MS.gene32093:CDS | 50.0% | |
| GACTCTGTTCACAGTACCAC+AGG | - | chr1.2:55760047-55760066 | None:intergenic | 50.0% | |
| GCTTACCCGTAAGCATATGG+TGG | - | chr1.2:55760378-55760397 | None:intergenic | 50.0% | |
| TCGCTCCAAACCAAACCAAC+TGG | - | chr1.2:55758918-55758937 | None:intergenic | 50.0% | |
| TGAGATACAGAAGACCCAGC+AGG | - | chr1.2:55757980-55757999 | None:intergenic | 50.0% | |
| TTCATCAGCCCTGTACTGCA+TGG | + | chr1.2:55759571-55759590 | MS.gene32093:intron | 50.0% | |
| ! | AAAGAGATGGGCGCTGTTCA+AGG | + | chr1.2:55757815-55757834 | MS.gene32093:CDS | 50.0% |
| ! | ATGTAGTCGGTTCCACCTTG+CGG | + | chr1.2:55759756-55759775 | MS.gene32093:intron | 50.0% |
| !! | AAAGCTTTTTCCCCGCAAGG+TGG | - | chr1.2:55759771-55759790 | None:intergenic | 50.0% |
| !! | ACCAAAGCTTTTTCCCCGCA+AGG | - | chr1.2:55759774-55759793 | None:intergenic | 50.0% |
| !! | CCTTAGCTTGCATTTCGCGA+AGG | - | chr1.2:55757790-55757809 | None:intergenic | 50.0% |
| !! | GTTTGGTTTGGAGCGAGTCT+GGG | + | chr1.2:55758922-55758941 | MS.gene32093:intron | 50.0% |
| ATTGCATGGCCGACAGCTGA+AGG | + | chr1.2:55760168-55760187 | MS.gene32093:CDS | 55.0% | |
| CAGTACGGAAGAAGACCTGC+TGG | + | chr1.2:55760312-55760331 | MS.gene32093:CDS | 55.0% | |
| GCAAGGTGGAACCGACTACA+TGG | - | chr1.2:55759757-55759776 | None:intergenic | 55.0% | |
| GCATGAAAGGTCTCCTACCG+CGG | - | chr1.2:55760341-55760360 | None:intergenic | 55.0% | |
| ! | TGTAGTCGGTTCCACCTTGC+GGG | + | chr1.2:55759757-55759776 | MS.gene32093:intron | 55.0% |
| !! | AGAAGACCTGCTGGTTTCCG+CGG | + | chr1.2:55760321-55760340 | MS.gene32093:CDS | 55.0% |
| !! | GGTTTGGTTTGGAGCGAGTC+TGG | + | chr1.2:55758921-55758940 | MS.gene32093:intron | 55.0% |
| ! | GTAGTCGGTTCCACCTTGCG+GGG | + | chr1.2:55759758-55759777 | MS.gene32093:intron | 60.0% |
| CTCCTACCGCGGAAACCAGC+AGG | - | chr1.2:55760330-55760349 | None:intergenic | 65.0% | |
| !! | GACCTGCTGGTTTCCGCGGT+AGG | + | chr1.2:55760325-55760344 | MS.gene32093:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 55757746 | 55760810 | 55757746 | ID=MS.gene32093 |
| chr1.2 | mRNA | 55757746 | 55760810 | 55757746 | ID=MS.gene32093.t1;Parent=MS.gene32093 |
| chr1.2 | exon | 55757746 | 55757836 | 55757746 | ID=MS.gene32093.t1.exon1;Parent=MS.gene32093.t1 |
| chr1.2 | CDS | 55757746 | 55757836 | 55757746 | ID=cds.MS.gene32093.t1;Parent=MS.gene32093.t1 |
| chr1.2 | exon | 55757975 | 55758045 | 55757975 | ID=MS.gene32093.t1.exon2;Parent=MS.gene32093.t1 |
| chr1.2 | CDS | 55757975 | 55758045 | 55757975 | ID=cds.MS.gene32093.t1;Parent=MS.gene32093.t1 |
| chr1.2 | exon | 55759998 | 55760189 | 55759998 | ID=MS.gene32093.t1.exon3;Parent=MS.gene32093.t1 |
| chr1.2 | CDS | 55759998 | 55760189 | 55759998 | ID=cds.MS.gene32093.t1;Parent=MS.gene32093.t1 |
| chr1.2 | exon | 55760276 | 55760391 | 55760276 | ID=MS.gene32093.t1.exon4;Parent=MS.gene32093.t1 |
| chr1.2 | CDS | 55760276 | 55760391 | 55760276 | ID=cds.MS.gene32093.t1;Parent=MS.gene32093.t1 |
| chr1.2 | exon | 55760795 | 55760810 | 55760795 | ID=MS.gene32093.t1.exon5;Parent=MS.gene32093.t1 |
| chr1.2 | CDS | 55760795 | 55760810 | 55760795 | ID=cds.MS.gene32093.t1;Parent=MS.gene32093.t1 |
| Gene Sequence |
| Protein sequence |
