AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060465


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060465.t1 MTR_7g029510 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_7g099610 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_5g063620 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_4g061827 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_4g061920 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_3g462400 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_3g054380 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_3g462730 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_3g462510 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_3g070920 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_3g061440 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_3g462410 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_2g096100 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_8g038460 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene060465.t1 MTR_4g128150 100.000 102 0 0 1 102 1 102 1.67e-66 204
MS.gene060465.t1 MTR_7g029520 84.000 50 8 0 27 76 1 50 2.15e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060465.t1 AT5G59970 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT5G59690 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT5G59970 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT3G46320 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT3G45930 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT3G53730 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT2G28740 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT1G07660 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT1G07820 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT1G07820 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene060465.t1 AT1G07660 83.495 103 0 1 1 103 1 86 4.34e-51 155

Find 0 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TTGATCTATGAGGAAACAAG+AGG - 47698:595-614 MS.gene060465:CDS 35.0%
AATCAGCGGTTTGATCTATG+AGG - 47698:585-604 MS.gene060465:CDS 40.0%
GGAGGTAAAGGATTAGGAAA+GGG - 47698:466-485 MS.gene060465:CDS 40.0%
GTTTATGCCCTTAAGAGACA+GGG - 47698:709-728 MS.gene060465:CDS 40.0%
TGATTCCTTGAATGTTGTCG+CGG + 47698:519-538 MS.gene060465:intergenic 40.0%
TGTTTATGCCCTTAAGAGAC+AGG - 47698:708-727 MS.gene060465:CDS 40.0%
!! AGGAGTGTTGAAGATCTTCT+TGG - 47698:615-634 MS.gene060465:CDS 40.0%
AAAGCCAGCAATTCGTCGAT+TGG - 47698:540-559 MS.gene060465:CDS 45.0%
GGAAAGGGAGGTAAAGGATT+AGG - 47698:460-479 MS.gene060465:CDS 45.0%
GGAAGAACCCTCTATGGTTT+CGG - 47698:730-749 MS.gene060465:CDS 45.0%
GGGAGGTAAAGGATTAGGAA+AGG - 47698:465-484 MS.gene060465:CDS 45.0%
GGTAAAGGATTAGGAAAGGG+AGG - 47698:469-488 MS.gene060465:CDS 45.0%
GGTTCTTCCCTGTCTCTTAA+GGG + 47698:719-738 MS.gene060465:intergenic 45.0%
TCAACCACCGAAACCATAGA+GGG + 47698:740-759 MS.gene060465:intergenic 45.0%
TTACTTACACTGAGCATGCG+AGG - 47698:659-678 MS.gene060465:CDS 45.0%
! GGAGGTGTGAAAAGAATCAG+CGG - 47698:571-590 MS.gene060465:CDS 45.0%
AGAACCCTCTATGGTTTCGG+TGG - 47698:733-752 MS.gene060465:CDS 50.0%
AGACAGGGAAGAACCCTCTA+TGG - 47698:724-743 MS.gene060465:CDS 50.0%
AGGTGCAAAGAGACATCGCA+AGG - 47698:489-508 MS.gene060465:CDS 50.0%
GAGGAAGACTGTGACTGCTA+TGG - 47698:681-700 MS.gene060465:CDS 50.0%
GGGTTCTTCCCTGTCTCTTA+AGG + 47698:720-739 MS.gene060465:intergenic 50.0%
GTTCTCCGCGACAACATTCA+AGG - 47698:511-530 MS.gene060465:CDS 50.0%
! ATTCGTCGATTGGCGAGAAG+AGG - 47698:550-569 MS.gene060465:CDS 50.0%
ATGTCTGGTCGTGGAAAGGG+AGG - 47698:448-467 MS.gene060465:CDS 55.0%
CTCGCCAATCGACGAATTGC+TGG + 47698:547-566 MS.gene060465:intergenic 55.0%
CTTACACTGAGCATGCGAGG+AGG - 47698:662-681 MS.gene060465:CDS 55.0%
GGTCGTGGAAAGGGAGGTAA+AGG - 47698:454-473 MS.gene060465:CDS 55.0%
! CGTCGATTGGCGAGAAGAGG+AGG - 47698:553-572 MS.gene060465:CDS 60.0%


Chromosome Type Strat End Strand Name
47698 gene 448 759 448 ID=MS.gene060465
47698 mRNA 448 759 448 ID=MS.gene060465.t1;Parent=MS.gene060465
47698 exon 448 759 448 ID=MS.gene060465.t1.exon1;Parent=MS.gene060465.t1
47698 CDS 448 759 448 ID=cds.MS.gene060465.t1;Parent=MS.gene060465.t1
Gene Sequence

>MS.gene060465

ATGTCTGGTCGTGGAAAGGGAGGTAAAGGATTAGGAAAGGGAGGTGCAAAGAGACATCGCAAGGTTCTCCGCGACAACATTCAAGGAATCACAAAGCCAGCAATTCGTCGATTGGCGAGAAGAGGAGGTGTGAAAAGAATCAGCGGTTTGATCTATGAGGAAACAAGAGGAGTGTTGAAGATCTTCTTGGAGAATGTGATAAGAGATGCTGTTACTTACACTGAGCATGCGAGGAGGAAGACTGTGACTGCTATGGATGTTGTTTATGCCCTTAAGAGACAGGGAAGAACCCTCTATGGTTTCGGTGGTTGA

Protein sequence

>MS.gene060465.t1

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG