Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32602.t1 | XP_024633382.1 | 98.8 | 648 | 8 | 0 | 1 | 648 | 1 | 648 | 0.00E+00 | 1275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32602.t1 | Q9SUU1 | 67.8 | 659 | 193 | 5 | 4 | 647 | 7 | 661 | 4.4e-262 | 905.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32602.t1 | G7JBM4 | 98.8 | 648 | 8 | 0 | 1 | 648 | 1 | 648 | 0.0e+00 | 1275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050811 | MS.gene32602 | 0.8309 | 2.26E-55 | -1.69E-46 |
| MS.gene052289 | MS.gene32602 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene059303 | MS.gene32602 | -0.825933 | 3.58E-54 | -1.69E-46 |
| MS.gene059683 | MS.gene32602 | -0.803916 | 2.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79489 | MS.gene32602 | PPI |
| MS.gene86346 | MS.gene32602 | PPI |
| MS.gene32602 | MS.gene37317 | PPI |
| MS.gene32602 | MS.gene89068 | PPI |
| MS.gene32602 | MS.gene034033 | PPI |
| MS.gene32602 | MS.gene026799 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32602.t1 | MTR_3g107730 | 98.820 | 678 | 8 | 0 | 1 | 678 | 1 | 678 | 0.0 | 1391 |
| MS.gene32602.t1 | MTR_3g107730 | 98.635 | 513 | 7 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1048 |
| MS.gene32602.t1 | MTR_1g011840 | 76.471 | 646 | 148 | 2 | 3 | 647 | 2 | 644 | 0.0 | 1015 |
| MS.gene32602.t1 | MTR_0459s0020 | 69.040 | 646 | 190 | 5 | 4 | 643 | 15 | 656 | 0.0 | 897 |
| MS.gene32602.t1 | MTR_0366s0020 | 62.187 | 640 | 160 | 4 | 4 | 643 | 15 | 572 | 0.0 | 774 |
| MS.gene32602.t1 | MTR_7g110000 | 58.041 | 684 | 255 | 7 | 4 | 666 | 7 | 679 | 0.0 | 765 |
| MS.gene32602.t1 | MTR_2g032690 | 57.562 | 648 | 254 | 4 | 4 | 639 | 7 | 645 | 0.0 | 762 |
| MS.gene32602.t1 | MTR_3g077670 | 58.923 | 650 | 245 | 7 | 4 | 639 | 7 | 648 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32602.t1 | AT4G32510 | 67.265 | 669 | 205 | 5 | 4 | 660 | 7 | 673 | 0.0 | 934 |
| MS.gene32602.t1 | AT4G32510 | 66.915 | 671 | 208 | 5 | 4 | 662 | 7 | 675 | 0.0 | 931 |
| MS.gene32602.t1 | AT5G25430 | 66.462 | 650 | 212 | 2 | 3 | 647 | 8 | 656 | 0.0 | 922 |
| MS.gene32602.t1 | AT1G15460 | 66.309 | 653 | 204 | 3 | 5 | 647 | 13 | 659 | 0.0 | 911 |
| MS.gene32602.t1 | AT1G15460 | 66.309 | 653 | 204 | 3 | 5 | 647 | 13 | 659 | 0.0 | 911 |
| MS.gene32602.t1 | AT1G74810 | 65.443 | 654 | 210 | 4 | 4 | 647 | 12 | 659 | 0.0 | 885 |
| MS.gene32602.t1 | AT1G74810 | 65.443 | 654 | 210 | 4 | 4 | 647 | 12 | 659 | 0.0 | 885 |
| MS.gene32602.t1 | AT1G74810 | 65.443 | 654 | 210 | 4 | 4 | 647 | 12 | 659 | 0.0 | 885 |
| MS.gene32602.t1 | AT1G15460 | 67.810 | 612 | 187 | 2 | 5 | 606 | 13 | 624 | 0.0 | 872 |
| MS.gene32602.t1 | AT1G74810 | 65.600 | 625 | 199 | 4 | 33 | 647 | 9 | 627 | 0.0 | 843 |
| MS.gene32602.t1 | AT1G74810 | 65.600 | 625 | 199 | 4 | 33 | 647 | 9 | 627 | 0.0 | 843 |
| MS.gene32602.t1 | AT3G62270 | 58.160 | 674 | 262 | 6 | 4 | 666 | 7 | 671 | 0.0 | 789 |
| MS.gene32602.t1 | AT2G47160 | 58.754 | 674 | 257 | 6 | 4 | 666 | 7 | 670 | 0.0 | 786 |
| MS.gene32602.t1 | AT2G47160 | 56.652 | 699 | 257 | 7 | 4 | 666 | 7 | 695 | 0.0 | 772 |
| MS.gene32602.t1 | AT1G15460 | 64.401 | 559 | 183 | 3 | 99 | 647 | 1 | 553 | 0.0 | 756 |
| MS.gene32602.t1 | AT3G06450 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 753 |
| MS.gene32602.t1 | AT3G06450 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 753 |
| MS.gene32602.t1 | AT3G06450 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 753 |
| MS.gene32602.t1 | AT3G06450 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 753 |
| MS.gene32602.t1 | AT1G74810 | 63.327 | 559 | 189 | 4 | 99 | 647 | 1 | 553 | 0.0 | 729 |
| MS.gene32602.t1 | AT1G74810 | 63.218 | 522 | 176 | 4 | 136 | 647 | 1 | 516 | 0.0 | 674 |
Find 171 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACCCGTGATTTATATATT+TGG | 0.189461 | 3.1:-85246206 | MS.gene32602:CDS |
| CGAGGCTTTATTGCAGATTA+TGG | 0.224792 | 3.1:-85246615 | MS.gene32602:CDS |
| TACCCGTGATTTATATATTT+GGG | 0.228711 | 3.1:-85246205 | MS.gene32602:CDS |
| AGAATTGCAGGGGAGTTATT+TGG | 0.243689 | 3.1:-85247067 | MS.gene32602:CDS |
| GGAATTATTCACTCAATTAT+AGG | 0.251240 | 3.1:-85247393 | MS.gene32602:CDS |
| CTGATTGGTTTATCGATAAT+AGG | 0.284857 | 3.1:-85245377 | MS.gene32602:CDS |
| ATTATAACAGGTTAAAGAAT+TGG | 0.285654 | 3.1:-85245537 | MS.gene32602:intron |
| ATGGCAATTGATAGTCTTCC+TGG | 0.286687 | 3.1:-85245299 | MS.gene32602:CDS |
| CAAAGAGTTTGGCAGTTCTT+AGG | 0.288036 | 3.1:-85245880 | MS.gene32602:CDS |
| GTCTTCCTGGGAATCAGTTC+TGG | 0.288459 | 3.1:-85245286 | MS.gene32602:CDS |
| TTTCTTTCAAGAGGCTATAA+AGG | 0.293379 | 3.1:-85247026 | MS.gene32602:intron |
| TGGTTAGGCTTGAATATCTT+TGG | 0.316056 | 3.1:+85244947 | None:intergenic |
| ATTACTTGTAACGCCGGCTT+GGG | 0.319641 | 3.1:+85245237 | None:intergenic |
| TTACTATGATGCAGAGATAT+TGG | 0.337001 | 3.1:-85244631 | MS.gene32602:CDS |
| CTTTCGGAGAACAACTTAGT+AGG | 0.339784 | 3.1:-85247470 | MS.gene32602:CDS |
| GCGCTTCCTGTCATTGCTTT+CGG | 0.340497 | 3.1:-85247486 | MS.gene32602:CDS |
| CTTGGCCTTCCTCCTTCAAA+TGG | 0.362198 | 3.1:-85245929 | MS.gene32602:CDS |
| TACCAAGCTCTTTCTAGCTT+GGG | 0.365109 | 3.1:-85247277 | MS.gene32602:CDS |
| CTGTTGTTCCATGCATTCCT+TGG | 0.365305 | 3.1:+85245725 | None:intergenic |
| AGTGGACAAAACAGCCTTCT+AGG | 0.365772 | 3.1:+85246522 | None:intergenic |
| AGTACCAGCTCTGAATTATA+TGG | 0.368865 | 3.1:-85245702 | MS.gene32602:CDS |
| ACTAGATTTACAAGAATTGC+AGG | 0.384496 | 3.1:-85247079 | MS.gene32602:CDS |
| TCCCATGCATACAAAGAGTT+TGG | 0.386041 | 3.1:-85245891 | MS.gene32602:CDS |
| GCAAGCTGTGTTCATTGAAA+TGG | 0.395458 | 3.1:-85245673 | MS.gene32602:CDS |
| TGGGTCTGCGCAATCTGTTC+CGG | 0.400996 | 3.1:-85247632 | MS.gene32602:CDS |
| ATTCAAGCCTAACCATCTTC+AGG | 0.402816 | 3.1:-85244939 | MS.gene32602:CDS |
| GTACCAAGCTCTTTCTAGCT+TGG | 0.404814 | 3.1:-85247278 | MS.gene32602:CDS |
| CAATCAGGAGGGACTGCAAT+AGG | 0.410300 | 3.1:+85245393 | None:intergenic |
| TAATAATAATGACAGCATAT+TGG | 0.412439 | 3.1:-85247538 | MS.gene32602:intron |
| CTATTGCAGTCCCTCCTGAT+TGG | 0.417106 | 3.1:-85245392 | MS.gene32602:CDS |
| TTCCAAGTGGTGTTCCTAGA+AGG | 0.420451 | 3.1:-85246536 | MS.gene32602:CDS |
| TTAAATGCTATAAACAAGAT+TGG | 0.422231 | 3.1:-85247652 | MS.gene32602:CDS |
| TGTGTTGCAGGGTTTGTGTT+TGG | 0.424941 | 3.1:-85247153 | MS.gene32602:intron |
| AAAGCAAGATCATGGCGATA+TGG | 0.432577 | 3.1:-85246771 | MS.gene32602:CDS |
| GCGCAATCTGTTCCGGCGTT+AGG | 0.439948 | 3.1:-85247625 | MS.gene32602:intron |
| TTTGGCAGTTCTTAGGAGGC+AGG | 0.441887 | 3.1:-85245873 | MS.gene32602:intron |
| TGTAATGAAATCTGATACCA+AGG | 0.445347 | 3.1:-85245498 | MS.gene32602:CDS |
| TGGATGAGATGACAACCAAC+AGG | 0.447214 | 3.1:-85244611 | MS.gene32602:CDS |
| ACACCACTTGGAACGTCGTC+AGG | 0.447750 | 3.1:+85246546 | None:intergenic |
| ACTCTGATATGTGGTCTCCT+TGG | 0.450753 | 3.1:-85245947 | MS.gene32602:CDS |
| TTGGCATCTACTGCCATTTG+TGG | 0.452678 | 3.1:-85247414 | MS.gene32602:CDS |
| CTTTGTTCATTAACTCGGAC+TGG | 0.459027 | 3.1:+85245425 | None:intergenic |
| GCAAAGAATATGTAGAAAGT+TGG | 0.461025 | 3.1:+85247513 | None:intergenic |
| AATTACTTGTAACGCCGGCT+TGG | 0.462717 | 3.1:+85245236 | None:intergenic |
| TGAGTGAATAATTCCACAAA+TGG | 0.463157 | 3.1:+85247401 | None:intergenic |
| AGATACACATGCCTCATTTG+TGG | 0.466869 | 3.1:-85245119 | MS.gene32602:CDS |
| TCTGAGTATGAGGAAATTAT+CGG | 0.467463 | 3.1:-85244905 | MS.gene32602:CDS |
| ACTTGATGCTTCTGAGTATG+AGG | 0.470967 | 3.1:-85244915 | MS.gene32602:CDS |
| TAAGTATCTATGTATTTCTC+AGG | 0.471983 | 3.1:+85245452 | None:intergenic |
| TGCCAAACTCTTTGTATGCA+TGG | 0.474151 | 3.1:+85245889 | None:intergenic |
| AGAATTATGAGAAGGAAGAA+TGG | 0.475173 | 3.1:+85244986 | None:intergenic |
| AAGCTCTTTCTAGCTTGGGC+TGG | 0.476446 | 3.1:-85247273 | MS.gene32602:CDS |
| TCTTTCTAGCTTGGGCTGGT+TGG | 0.476758 | 3.1:-85247269 | MS.gene32602:intron |
| ATCCATTGGTATACCGCCAT+TGG | 0.477208 | 3.1:+85246847 | None:intergenic |
| ATTCCAGCTTTGATGATAGC+AGG | 0.478040 | 3.1:-85246176 | MS.gene32602:CDS |
| ATGTATTTCTCAGGATCAAA+AGG | 0.479705 | 3.1:+85245461 | None:intergenic |
| TAAATGCTATAAACAAGATT+GGG | 0.483293 | 3.1:-85247651 | MS.gene32602:CDS |
| ATAAAGAGATGCAGGTTCCC+AGG | 0.487430 | 3.1:+85246497 | None:intergenic |
| CAGAAAATATGCCAACTGTA+AGG | 0.487488 | 3.1:+85245060 | None:intergenic |
| TCTTGAATGATTCCCTCAAA+TGG | 0.488582 | 3.1:+85247689 | None:intergenic |
| CAAGTAGGAAAACATCATAA+TGG | 0.491729 | 3.1:+85246075 | None:intergenic |
| AATCCAGCTATGGTCTTGAA+TGG | 0.492132 | 3.1:+85245088 | None:intergenic |
| CTCCTAAAATCAACAAAGGT+TGG | 0.498920 | 3.1:+85247367 | None:intergenic |
| TCTTCCTGGGAATCAGTTCT+GGG | 0.500146 | 3.1:-85245285 | MS.gene32602:CDS |
| TAGGCATCTCCGTTATCAAA+AGG | 0.509147 | 3.1:-85245358 | MS.gene32602:CDS |
| GTCCAGTGATAAAGAGATGC+AGG | 0.510174 | 3.1:+85246489 | None:intergenic |
| TAACATGGGAGCACCATTTG+AGG | 0.510206 | 3.1:-85247702 | None:intergenic |
| AACATGGGAGCACCATTTGA+GGG | 0.512969 | 3.1:-85247701 | MS.gene32602:CDS |
| TGTTCTGTTTCGGGGTCACA+TGG | 0.513903 | 3.1:-85245039 | MS.gene32602:CDS |
| GATGCAGGTTCCCAGGGAAG+TGG | 0.514690 | 3.1:+85246504 | None:intergenic |
| TCATTCTTTGTTCATTAACT+CGG | 0.516096 | 3.1:+85245420 | None:intergenic |
| AAACCTGCTATCATCAAAGC+TGG | 0.519396 | 3.1:+85246173 | None:intergenic |
| TTTCGGAGAACAACTTAGTA+GGG | 0.520810 | 3.1:-85247469 | MS.gene32602:CDS |
| AAGCATCAAGTTCCTGAAGA+TGG | 0.521659 | 3.1:+85244927 | None:intergenic |
| GTACCATTCAAGACCATAGC+TGG | 0.525744 | 3.1:-85245091 | MS.gene32602:CDS |
| CAGTACGTAGTATGTCACTC+AGG | 0.526268 | 3.1:-85244871 | MS.gene32602:CDS |
| TCTACAAACTGCAGGATATG+TGG | 0.526801 | 3.1:-85246232 | MS.gene32602:intron |
| AACCTGCATCTCTTTATCAC+TGG | 0.527373 | 3.1:-85246491 | MS.gene32602:CDS |
| CTTCATTGAAGCTGTTACTG+TGG | 0.527596 | 3.1:+85244493 | None:intergenic |
| GTCCACAACACTACCATCAC+TGG | 0.527804 | 3.1:+85246588 | None:intergenic |
| AGGTTCCATTGCACAACCCT+TGG | 0.529505 | 3.1:+85245481 | None:intergenic |
| TCAAGTTCCTGAAGATGGTT+AGG | 0.529736 | 3.1:+85244932 | None:intergenic |
| CTATTATCGATAAACCAATC+AGG | 0.530355 | 3.1:+85245378 | None:intergenic |
| TGCCCCAAATATATAAATCA+CGG | 0.532143 | 3.1:+85246202 | None:intergenic |
| GCCAAACTCTTTGTATGCAT+GGG | 0.535179 | 3.1:+85245890 | None:intergenic |
| AAGTTTCAACTCTCCCCTGT+TGG | 0.535774 | 3.1:+85244596 | None:intergenic |
| ATTTGCAGCTGATCCGAAAG+AGG | 0.538031 | 3.1:-85245761 | MS.gene32602:intron |
| CTTTCCCAGAACTGATTCCC+AGG | 0.538850 | 3.1:+85245281 | None:intergenic |
| TGTGGAAGGACTCCATTTGA+AGG | 0.542425 | 3.1:+85245917 | None:intergenic |
| AGCCCAAGCTAGAAAGAGCT+TGG | 0.543809 | 3.1:+85247275 | None:intergenic |
| TTCCAGTGATGGTAGTGTTG+TGG | 0.547605 | 3.1:-85246590 | MS.gene32602:CDS |
| TAAGTGTACATTATAACAGT+TGG | 0.548681 | 3.1:+85247336 | None:intergenic |
| TTGCAGGGTTTGTGTTTGGA+CGG | 0.549975 | 3.1:-85247149 | MS.gene32602:intron |
| TCCTCTTCGTCACCCCAAGC+CGG | 0.550263 | 3.1:-85245250 | MS.gene32602:CDS |
| GCCCCAAATATATAAATCAC+GGG | 0.551841 | 3.1:+85246203 | None:intergenic |
| ACCCGTGATTTATATATTTG+GGG | 0.552067 | 3.1:-85246204 | MS.gene32602:CDS |
| AATGACTGCAAGTAATCCAT+TGG | 0.552859 | 3.1:+85246833 | None:intergenic |
| TTCCAATGGCGGTATACCAA+TGG | 0.553783 | 3.1:-85246849 | MS.gene32602:CDS |
| TCATAGCGTGGCTTCTCAGA+TGG | 0.555026 | 3.1:-85246138 | MS.gene32602:CDS |
| TAGGAAAACATCATAATGGT+AGG | 0.556385 | 3.1:+85246079 | None:intergenic |
| AGAGTTTGGCAGTTCTTAGG+AGG | 0.556567 | 3.1:-85245877 | MS.gene32602:CDS |
| AGCCTTCTAGGAACACCACT+TGG | 0.556893 | 3.1:+85246534 | None:intergenic |
| TAGGCTTGAATATCTTTGGA+AGG | 0.557117 | 3.1:+85244951 | None:intergenic |
| AAAGCAGAAAAGCAAGATCA+TGG | 0.557963 | 3.1:-85246779 | MS.gene32602:CDS |
| GACATACTACGTACTGCAGA+TGG | 0.563507 | 3.1:+85244878 | None:intergenic |
| TGGATTTACAGCCTTACAGT+TGG | 0.564075 | 3.1:-85245071 | MS.gene32602:CDS |
| CCACGTGATAGTGATAATGA+TGG | 0.565884 | 3.1:-85244666 | MS.gene32602:CDS |
| ATGAGAAGGAAGAATGGTAG+CGG | 0.566015 | 3.1:+85244992 | None:intergenic |
| AATTGCAATTCCTCCGACGA+AGG | 0.567377 | 3.1:+85246870 | None:intergenic |
| TGTTCTCCGAAAGCAATGAC+AGG | 0.569284 | 3.1:+85247480 | None:intergenic |
| CTGGGAATCAGTTCTGGGAA+AGG | 0.571040 | 3.1:-85245280 | MS.gene32602:CDS |
| GATCATTGAAGCTGTTACTG+TGG | 0.571270 | 3.1:+85244520 | None:intergenic |
| CTTGAGCACTGTAGAAACAT+TGG | 0.571302 | 3.1:-85247433 | MS.gene32602:CDS |
| TGATACCAAGGGTTGTGCAA+TGG | 0.575807 | 3.1:-85245486 | MS.gene32602:CDS |
| TGGTACTGTCTCCACAAATG+AGG | 0.576656 | 3.1:+85245108 | None:intergenic |
| CAGGAGGGACTGCAATAGGT+TGG | 0.576763 | 3.1:+85245397 | None:intergenic |
| GGAATCATTCAAGATGTCAA+AGG | 0.583983 | 3.1:-85247680 | MS.gene32602:CDS |
| TATCCCCATAAAACCGAGGT+AGG | 0.584080 | 3.1:+85245332 | None:intergenic |
| AGATTATGGTGTTCCAGTGA+TGG | 0.584710 | 3.1:-85246601 | MS.gene32602:CDS |
| CGGAGGAATTGCAATTCCAA+TGG | 0.585619 | 3.1:-85246863 | MS.gene32602:CDS |
| ACATCATAATGGTAGGCAGA+TGG | 0.586423 | 3.1:+85246086 | None:intergenic |
| GCCGGCTTGGGGTGACGAAG+AGG | 0.586471 | 3.1:+85245249 | None:intergenic |
| GGACTCCATTTGAAGGAGGA+AGG | 0.587102 | 3.1:+85245924 | None:intergenic |
| CTAGATTTACAAGAATTGCA+GGG | 0.588173 | 3.1:-85247078 | MS.gene32602:CDS |
| AGTCTTTAGACTCTGATATG+TGG | 0.592532 | 3.1:-85245956 | MS.gene32602:intron |
| TGGCAATTGATAGTCTTCCT+GGG | 0.593727 | 3.1:-85245298 | MS.gene32602:CDS |
| GAAAAGCGCCAAGGAATGCA+TGG | 0.594390 | 3.1:-85245733 | MS.gene32602:CDS |
| TTTGCAGCTGATCCGAAAGA+GGG | 0.595342 | 3.1:-85245760 | MS.gene32602:intron |
| TAAGGCTGTAAATCCAGCTA+TGG | 0.595564 | 3.1:+85245078 | None:intergenic |
| TAGTGATAATGATGGAAGCT+CGG | 0.596596 | 3.1:-85244658 | MS.gene32602:CDS |
| TACTCAATTACTTGTAACGC+CGG | 0.600590 | 3.1:+85245231 | None:intergenic |
| GCTTGAATATCTTTGGAAGG+AGG | 0.601711 | 3.1:+85244954 | None:intergenic |
| AAGAGCTTGGTACCCAGTTG+AGG | 0.604187 | 3.1:+85247288 | None:intergenic |
| AGGCGAGTTCAGCACTCCCA+AGG | 0.604329 | 3.1:-85246901 | MS.gene32602:CDS |
| TTTGAACCACAGGGACTGGT+AGG | 0.604416 | 3.1:-85246921 | MS.gene32602:intron |
| GGAAACAATATTCCACCTAT+CGG | 0.607030 | 3.1:+85245013 | None:intergenic |
| GATCATTGAAGCTGTTACTG+CGG | 0.608964 | 3.1:+85244547 | None:intergenic |
| ATTATTCACTCAATTATAGG+TGG | 0.609337 | 3.1:-85247390 | MS.gene32602:CDS |
| CAAGGTTGAAAATCCTTCGT+CGG | 0.611167 | 3.1:-85246883 | MS.gene32602:CDS |
| GGATGAGATGACAACCAACA+GGG | 0.624263 | 3.1:-85244610 | MS.gene32602:CDS |
| TAAAGAGATGCAGGTTCCCA+GGG | 0.625123 | 3.1:+85246498 | None:intergenic |
| GTTCTCTGAGAATTATGAGA+AGG | 0.627074 | 3.1:+85244978 | None:intergenic |
| TTATCACTGGACAGTAGTGA+AGG | 0.627297 | 3.1:-85246478 | MS.gene32602:intron |
| CAACTTAGTAGGGATACAGA+TGG | 0.633505 | 3.1:-85247459 | MS.gene32602:CDS |
| TAGATTTACAAGAATTGCAG+GGG | 0.635506 | 3.1:-85247077 | MS.gene32602:CDS |
| GGTTGAAAATCCTTCGTCGG+AGG | 0.639194 | 3.1:-85246880 | MS.gene32602:CDS |
| GGGGTCACATGGATACCGAT+AGG | 0.640094 | 3.1:-85245028 | MS.gene32602:CDS |
| TTTGTATGCATGGGAGACTG+TGG | 0.640494 | 3.1:+85245899 | None:intergenic |
| TTCAATTCAGGGAGGCTACG+AGG | 0.640834 | 3.1:-85246633 | MS.gene32602:intron |
| TGAATGAAATTACCTAACGC+CGG | 0.642840 | 3.1:+85247613 | None:intergenic |
| TATCAAAAGGATACCTACCT+CGG | 0.648218 | 3.1:-85245345 | MS.gene32602:CDS |
| TTATCGATAAACCAATCAGG+AGG | 0.649930 | 3.1:+85245381 | None:intergenic |
| TTACTTGTAACGCCGGCTTG+GGG | 0.651277 | 3.1:+85245238 | None:intergenic |
| CAAACTGCAGGATATGTGGA+AGG | 0.653071 | 3.1:-85246228 | MS.gene32602:intron |
| GCAACTCCTAAAATCAACAA+AGG | 0.653603 | 3.1:+85247363 | None:intergenic |
| CATTTGAAGGAGGAAGGCCA+AGG | 0.657670 | 3.1:+85245930 | None:intergenic |
| GTCACATGGATACCGATAGG+TGG | 0.659868 | 3.1:-85245025 | MS.gene32602:CDS |
| AACAGACCATTATTCCAAGT+AGG | 0.662683 | 3.1:+85246060 | None:intergenic |
| TATCGATAAACCAATCAGGA+GGG | 0.666981 | 3.1:+85245382 | None:intergenic |
| GAAAGCAATGACAGGAAGCG+CGG | 0.670114 | 3.1:+85247488 | None:intergenic |
| ATGCCTGACGACGTTCCAAG+TGG | 0.671559 | 3.1:-85246549 | MS.gene32602:CDS |
| AGGAATTGCAATTCCAATGG+CGG | 0.673504 | 3.1:-85246860 | MS.gene32602:CDS |
| AGTACGTAGTATGTCACTCA+GGG | 0.676575 | 3.1:-85244870 | MS.gene32602:intron |
| GGAAGGACTCCATTTGAAGG+AGG | 0.676893 | 3.1:+85245920 | None:intergenic |
| TATGCATGGGAGACTGTGGA+AGG | 0.677272 | 3.1:+85245903 | None:intergenic |
| GTAATGAAATCTGATACCAA+GGG | 0.682765 | 3.1:-85245497 | MS.gene32602:CDS |
| AAAATATCCCCATAAAACCG+AGG | 0.688473 | 3.1:+85245328 | None:intergenic |
| GAGGGTTGTGAAAAGCGCCA+AGG | 0.688617 | 3.1:-85245742 | MS.gene32602:CDS |
| CCTAACAATACATACAGTAG+GGG | 0.689459 | 3.1:+85245644 | None:intergenic |
| CCATCATTATCACTATCACG+TGG | 0.692316 | 3.1:+85244666 | None:intergenic |
| GATGAGATGACAACCAACAG+GGG | 0.715278 | 3.1:-85244609 | MS.gene32602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATGCTTAAATATATTTT+TGG | + | chr3.1:85247416-85247435 | None:intergenic | 10.0% |
| !! | AAATACATTGTGTATTTAAT+TGG | - | chr3.1:85245212-85245231 | MS.gene32602:intron | 15.0% |
| !! | ATTCTTTAAATTTCTGTTTA+AGG | - | chr3.1:85244950-85244969 | MS.gene32602:CDS | 15.0% |
| !! | TTCTTTAAATTTCTGTTTAA+GGG | - | chr3.1:85244951-85244970 | MS.gene32602:CDS | 15.0% |
| !! | ATAACATAAATCCAAATTCT+AGG | + | chr3.1:85246156-85246175 | None:intergenic | 20.0% |
| !! | ATTATAACAGGTTAAAGAAT+TGG | - | chr3.1:85246640-85246659 | MS.gene32602:intron | 20.0% |
| !! | CCAAAAAAAAAAATTGCTTA+AGG | + | chr3.1:85245471-85245490 | None:intergenic | 20.0% |
| !! | CTACATTGAAAAAAAAGTTT+AGG | + | chr3.1:85246980-85246999 | None:intergenic | 20.0% |
| !! | TAAATGCTATAAACAAGATT+GGG | - | chr3.1:85244526-85244545 | MS.gene32602:CDS | 20.0% |
| !! | TAATAATAATGACAGCATAT+TGG | - | chr3.1:85244639-85244658 | MS.gene32602:CDS | 20.0% |
| !! | TTAAATGCTATAAACAAGAT+TGG | - | chr3.1:85244525-85244544 | MS.gene32602:CDS | 20.0% |
| !!! | CCTTAAGCAATTTTTTTTTT+TGG | - | chr3.1:85245468-85245487 | MS.gene32602:CDS | 20.0% |
| !!! | GTTGGTTTTTAAATTATAAC+AGG | - | chr3.1:85246628-85246647 | MS.gene32602:intron | 20.0% |
| !!! | TGTATAAAAAGAAAGCATTT+TGG | + | chr3.1:85245762-85245781 | None:intergenic | 20.0% |
| !!! | TTCTTATTTTTGTTAGAAAG+AGG | + | chr3.1:85245193-85245212 | None:intergenic | 20.0% |
| ! | AATGCAAGAATAAAGATCAT+TGG | + | chr3.1:85245525-85245544 | None:intergenic | 25.0% |
| ! | ATTATTCACTCAATTATAGG+TGG | - | chr3.1:85244787-85244806 | MS.gene32602:intron | 25.0% |
| ! | GATTGACATAATTATCTCTA+TGG | - | chr3.1:85246196-85246215 | MS.gene32602:CDS | 25.0% |
| ! | GGAATTATTCACTCAATTAT+AGG | - | chr3.1:85244784-85244803 | MS.gene32602:intron | 25.0% |
| ! | GTTAGACTTATATGGATATT+AGG | + | chr3.1:85245921-85245940 | None:intergenic | 25.0% |
| ! | TAAGTATCTATGTATTTCTC+AGG | + | chr3.1:85246728-85246747 | None:intergenic | 25.0% |
| ! | TAAGTGTACATTATAACAGT+TGG | + | chr3.1:85244844-85244863 | None:intergenic | 25.0% |
| ! | TACCCGTGATTTATATATTT+GGG | - | chr3.1:85245972-85245991 | MS.gene32602:intron | 25.0% |
| ! | TATTCTTGCATTTCAATTCA+GGG | - | chr3.1:85245533-85245552 | MS.gene32602:intron | 25.0% |
| ! | TCATTCTTTGTTCATTAACT+CGG | + | chr3.1:85246760-85246779 | None:intergenic | 25.0% |
| ! | TTATTCTTGCATTTCAATTC+AGG | - | chr3.1:85245532-85245551 | MS.gene32602:intron | 25.0% |
| !!! | AGTCGTGATCATTTTAATTT+AGG | - | chr3.1:85245890-85245909 | MS.gene32602:CDS | 25.0% |
| !!! | TTTGTTTTCTTCCTAGAATT+TGG | - | chr3.1:85246142-85246161 | MS.gene32602:CDS | 25.0% |
| AAATTGCTTAAGGTCTAATG+TGG | + | chr3.1:85245461-85245480 | None:intergenic | 30.0% | |
| AACCTAACAATACATACAGT+AGG | + | chr3.1:85246538-85246557 | None:intergenic | 30.0% | |
| ACAAAAATTGTTTGAACCAC+AGG | - | chr3.1:85245246-85245265 | MS.gene32602:CDS | 30.0% | |
| ACCAAATTCAAATCCTAAGT+TGG | + | chr3.1:85247475-85247494 | None:intergenic | 30.0% | |
| ACCCGTGATTTATATATTTG+GGG | - | chr3.1:85245973-85245992 | MS.gene32602:intron | 30.0% | |
| ACCTAACAATACATACAGTA+GGG | + | chr3.1:85246537-85246556 | None:intergenic | 30.0% | |
| ACTAGATTTACAAGAATTGC+AGG | - | chr3.1:85245098-85245117 | MS.gene32602:CDS | 30.0% | |
| AGAATTATGAGAAGGAAGAA+TGG | + | chr3.1:85247194-85247213 | None:intergenic | 30.0% | |
| ATGTATTTCTCAGGATCAAA+AGG | + | chr3.1:85246719-85246738 | None:intergenic | 30.0% | |
| CAAAAATTGTTTGAACCACA+GGG | - | chr3.1:85245247-85245266 | MS.gene32602:CDS | 30.0% | |
| CAAGTAGGAAAACATCATAA+TGG | + | chr3.1:85246105-85246124 | None:intergenic | 30.0% | |
| CTAGATTTACAAGAATTGCA+GGG | - | chr3.1:85245099-85245118 | MS.gene32602:CDS | 30.0% | |
| CTATTATCGATAAACCAATC+AGG | + | chr3.1:85246802-85246821 | None:intergenic | 30.0% | |
| GAAAAAAAAGTTTAGGCACA+AGG | + | chr3.1:85246973-85246992 | None:intergenic | 30.0% | |
| GATACTAATACACATAGTGT+TGG | - | chr3.1:85246610-85246629 | MS.gene32602:CDS | 30.0% | |
| GCAAAGAATATGTAGAAAGT+TGG | + | chr3.1:85244667-85244686 | None:intergenic | 30.0% | |
| GTAATGAAATCTGATACCAA+GGG | - | chr3.1:85246680-85246699 | MS.gene32602:intron | 30.0% | |
| GTACCCGTGATTTATATATT+TGG | - | chr3.1:85245971-85245990 | MS.gene32602:intron | 30.0% | |
| TAAAGATCATTGGAGTGATA+AGG | + | chr3.1:85245515-85245534 | None:intergenic | 30.0% | |
| TAGAAGCTGTTAGACTTATA+TGG | + | chr3.1:85245929-85245948 | None:intergenic | 30.0% | |
| TAGATTTACAAGAATTGCAG+GGG | - | chr3.1:85245100-85245119 | MS.gene32602:CDS | 30.0% | |
| TAGGAAAACATCATAATGGT+AGG | + | chr3.1:85246101-85246120 | None:intergenic | 30.0% | |
| TCCAACTTAGGATTTGAATT+TGG | - | chr3.1:85247471-85247490 | MS.gene32602:CDS | 30.0% | |
| TCTGAGTATGAGGAAATTAT+CGG | - | chr3.1:85247272-85247291 | MS.gene32602:CDS | 30.0% | |
| TGAGTGAATAATTCCACAAA+TGG | + | chr3.1:85244779-85244798 | None:intergenic | 30.0% | |
| TGCCCCAAATATATAAATCA+CGG | + | chr3.1:85245978-85245997 | None:intergenic | 30.0% | |
| TGTAATGAAATCTGATACCA+AGG | - | chr3.1:85246679-85246698 | MS.gene32602:intron | 30.0% | |
| TTACTATGATGCAGAGATAT+TGG | - | chr3.1:85247546-85247565 | MS.gene32602:intron | 30.0% | |
| TTGAGAAGAAATTAAGAACC+AGG | + | chr3.1:85246359-85246378 | None:intergenic | 30.0% | |
| TTTCTTTCAAGAGGCTATAA+AGG | - | chr3.1:85245151-85245170 | MS.gene32602:intron | 30.0% | |
| ! | ACGAACATTTTAGATCGATA+CGG | + | chr3.1:85245001-85245020 | None:intergenic | 30.0% |
| ! | ATATTTTCTGTTCTGTTTCG+GGG | - | chr3.1:85247130-85247149 | MS.gene32602:CDS | 30.0% |
| ! | CATATTTTCTGTTCTGTTTC+GGG | - | chr3.1:85247129-85247148 | MS.gene32602:CDS | 30.0% |
| ! | CATCGATATATTTTGCATCA+AGG | - | chr3.1:85246331-85246350 | MS.gene32602:intron | 30.0% |
| ! | CATTATGATGTTTTCCTACT+TGG | - | chr3.1:85246103-85246122 | MS.gene32602:CDS | 30.0% |
| ! | GCATATTTTCTGTTCTGTTT+CGG | - | chr3.1:85247128-85247147 | MS.gene32602:CDS | 30.0% |
| ! | GTCATTGTCTTGTATGTTTT+GGG | - | chr3.1:85247023-85247042 | MS.gene32602:intron | 30.0% |
| ! | TGTCATTGTCTTGTATGTTT+TGG | - | chr3.1:85247022-85247041 | MS.gene32602:intron | 30.0% |
| ! | TGTTTTCCTACTTGGAATAA+TGG | - | chr3.1:85246111-85246130 | MS.gene32602:CDS | 30.0% |
| ! | TTTTCCATATAATTCAGAGC+TGG | + | chr3.1:85246482-85246501 | None:intergenic | 30.0% |
| !! | CTAATGTGGTATTGGATTTT+TGG | + | chr3.1:85245447-85245466 | None:intergenic | 30.0% |
| !! | CTGATTGGTTTATCGATAAT+AGG | - | chr3.1:85246800-85246819 | MS.gene32602:CDS | 30.0% |
| !! | TTGCAGTCATTTTCTCTTTT+GGG | - | chr3.1:85245356-85245375 | MS.gene32602:CDS | 30.0% |
| AAAATATCCCCATAAAACCG+AGG | + | chr3.1:85246852-85246871 | None:intergenic | 35.0% | |
| AAAGCAGAAAAGCAAGATCA+TGG | - | chr3.1:85245398-85245417 | MS.gene32602:CDS | 35.0% | |
| AACAGACCATTATTCCAAGT+AGG | + | chr3.1:85246120-85246139 | None:intergenic | 35.0% | |
| AATGACTGCAAGTAATCCAT+TGG | + | chr3.1:85245347-85245366 | None:intergenic | 35.0% | |
| AATGTTCGTATTTGTGTTGC+AGG | - | chr3.1:85245012-85245031 | MS.gene32602:CDS | 35.0% | |
| AGTCTTTAGACTCTGATATG+TGG | - | chr3.1:85246221-85246240 | MS.gene32602:CDS | 35.0% | |
| ATGTTCGTATTTGTGTTGCA+GGG | - | chr3.1:85245013-85245032 | MS.gene32602:CDS | 35.0% | |
| CAGAAAATATGCCAACTGTA+AGG | + | chr3.1:85247120-85247139 | None:intergenic | 35.0% | |
| CATTAACACGTGTCATACAT+CGG | + | chr3.1:85245851-85245870 | None:intergenic | 35.0% | |
| CCTAACAATACATACAGTAG+GGG | + | chr3.1:85246536-85246555 | None:intergenic | 35.0% | |
| CTCCTAAAATCAACAAAGGT+TGG | + | chr3.1:85244813-85244832 | None:intergenic | 35.0% | |
| CTCTACAGACATACATTACA+TGG | + | chr3.1:85245814-85245833 | None:intergenic | 35.0% | |
| CTTAAGGTCTAATGTGGTAT+TGG | + | chr3.1:85245455-85245474 | None:intergenic | 35.0% | |
| GAATTTGGTTGATCAGGATA+GGG | - | chr3.1:85247486-85247505 | MS.gene32602:CDS | 35.0% | |
| GCAACTCCTAAAATCAACAA+AGG | + | chr3.1:85244817-85244836 | None:intergenic | 35.0% | |
| GCCCCAAATATATAAATCAC+GGG | + | chr3.1:85245977-85245996 | None:intergenic | 35.0% | |
| GGAAACAATATTCCACCTAT+CGG | + | chr3.1:85247167-85247186 | None:intergenic | 35.0% | |
| GGAATCATTCAAGATGTCAA+AGG | - | chr3.1:85244497-85244516 | MS.gene32602:CDS | 35.0% | |
| GGATTTGAATTTGGTTGATC+AGG | - | chr3.1:85247480-85247499 | MS.gene32602:CDS | 35.0% | |
| TACTCAATTACTTGTAACGC+CGG | + | chr3.1:85246949-85246968 | None:intergenic | 35.0% | |
| TAGGCTTGAATATCTTTGGA+AGG | + | chr3.1:85247229-85247248 | None:intergenic | 35.0% | |
| TATCAAAAGGATACCTACCT+CGG | - | chr3.1:85246832-85246851 | MS.gene32602:CDS | 35.0% | |
| TATCGATAAACCAATCAGGA+GGG | + | chr3.1:85246798-85246817 | None:intergenic | 35.0% | |
| TCTTGAATGATTCCCTCAAA+TGG | + | chr3.1:85244491-85244510 | None:intergenic | 35.0% | |
| TGAATGAAATTACCTAACGC+CGG | + | chr3.1:85244567-85244586 | None:intergenic | 35.0% | |
| TGAATTTGGTTGATCAGGAT+AGG | - | chr3.1:85247485-85247504 | MS.gene32602:CDS | 35.0% | |
| TGCAAAAATACACCTCAACT+GGG | - | chr3.1:85244877-85244896 | MS.gene32602:CDS | 35.0% | |
| TGGTTAGGCTTGAATATCTT+TGG | + | chr3.1:85247233-85247252 | None:intergenic | 35.0% | |
| TTATCGATAAACCAATCAGG+AGG | + | chr3.1:85246799-85246818 | None:intergenic | 35.0% | |
| TTTCGGAGAACAACTTAGTA+GGG | - | chr3.1:85244708-85244727 | MS.gene32602:intron | 35.0% | |
| ! | AAATCCTAAGTTGGAAAGCT+TGG | + | chr3.1:85247466-85247485 | None:intergenic | 35.0% |
| ! | ATGGGGATATTTTGCTTACA+TGG | - | chr3.1:85246859-85246878 | MS.gene32602:CDS | 35.0% |
| ! | CACTGTTCTTTTCTTTCAAG+AGG | - | chr3.1:85245142-85245161 | MS.gene32602:intron | 35.0% |
| ! | GGTAGGTATCCTTTTGATAA+CGG | + | chr3.1:85246831-85246850 | None:intergenic | 35.0% |
| ! | GTATGTCTGTAGAGTATTCA+AGG | - | chr3.1:85245820-85245839 | MS.gene32602:intron | 35.0% |
| ! | GTTCTCTGAGAATTATGAGA+AGG | + | chr3.1:85247202-85247221 | None:intergenic | 35.0% |
| ! | TAGTGATAATGATGGAAGCT+CGG | - | chr3.1:85247519-85247538 | MS.gene32602:CDS | 35.0% |
| !! | AGTACCAGCTCTGAATTATA+TGG | - | chr3.1:85246475-85246494 | MS.gene32602:intron | 35.0% |
| !! | CTTGCAGTCATTTTCTCTTT+TGG | - | chr3.1:85245355-85245374 | MS.gene32602:CDS | 35.0% |
| !!! | ATACTTTTTCGATCATAGCG+TGG | - | chr3.1:85246027-85246046 | MS.gene32602:intron | 35.0% |
| AAACCTGCTATCATCAAAGC+TGG | + | chr3.1:85246007-85246026 | None:intergenic | 40.0% | |
| AAAGCAAGATCATGGCGATA+TGG | - | chr3.1:85245406-85245425 | MS.gene32602:CDS | 40.0% | |
| AACCTGCATCTCTTTATCAC+TGG | - | chr3.1:85245686-85245705 | MS.gene32602:CDS | 40.0% | |
| AAGCATCAAGTTCCTGAAGA+TGG | + | chr3.1:85247253-85247272 | None:intergenic | 40.0% | |
| ACATCATAATGGTAGGCAGA+TGG | + | chr3.1:85246094-85246113 | None:intergenic | 40.0% | |
| ACTTGATGCTTCTGAGTATG+AGG | - | chr3.1:85247262-85247281 | MS.gene32602:intron | 40.0% | |
| AGAATTGCAGGGGAGTTATT+TGG | - | chr3.1:85245110-85245129 | MS.gene32602:CDS | 40.0% | |
| AGATACACATGCCTCATTTG+TGG | - | chr3.1:85247058-85247077 | MS.gene32602:CDS | 40.0% | |
| AGATTATGGTGTTCCAGTGA+TGG | - | chr3.1:85245576-85245595 | MS.gene32602:intron | 40.0% | |
| AGGAATTGCAATTCCAATGG+CGG | - | chr3.1:85245317-85245336 | MS.gene32602:CDS | 40.0% | |
| AGTACGTAGTATGTCACTCA+GGG | - | chr3.1:85247307-85247326 | MS.gene32602:CDS | 40.0% | |
| ATGAGAAGGAAGAATGGTAG+CGG | + | chr3.1:85247188-85247207 | None:intergenic | 40.0% | |
| ATTCAAGCCTAACCATCTTC+AGG | - | chr3.1:85247238-85247257 | MS.gene32602:intron | 40.0% | |
| CAAAGAGTTTGGCAGTTCTT+AGG | - | chr3.1:85246297-85246316 | MS.gene32602:intron | 40.0% | |
| CAAATCAATGGTGCAACACA+AGG | + | chr3.1:85246401-85246420 | None:intergenic | 40.0% | |
| CAACTTAGTAGGGATACAGA+TGG | - | chr3.1:85244718-85244737 | MS.gene32602:intron | 40.0% | |
| CAAGGTTGAAAATCCTTCGT+CGG | - | chr3.1:85245294-85245313 | MS.gene32602:CDS | 40.0% | |
| CCATCATTATCACTATCACG+TGG | + | chr3.1:85247514-85247533 | None:intergenic | 40.0% | |
| CCCCTACTGTATGTATTGTT+AGG | - | chr3.1:85246533-85246552 | MS.gene32602:CDS | 40.0% | |
| CTGCAAAAATACACCTCAAC+TGG | - | chr3.1:85244876-85244895 | MS.gene32602:CDS | 40.0% | |
| CTTCATTGAAGCTGTTACTG+TGG | + | chr3.1:85247687-85247706 | None:intergenic | 40.0% | |
| CTTTCGGAGAACAACTTAGT+AGG | - | chr3.1:85244707-85244726 | MS.gene32602:intron | 40.0% | |
| CTTTGTTCATTAACTCGGAC+TGG | + | chr3.1:85246755-85246774 | None:intergenic | 40.0% | |
| GATCATTGAAGCTGTTACTG+CGG | + | chr3.1:85247633-85247652 | None:intergenic | 40.0% | |
| GATCATTGAAGCTGTTACTG+TGG | + | chr3.1:85247633-85247652 | None:intergenic | 40.0% | |
| GCAAGCTGTGTTCATTGAAA+TGG | - | chr3.1:85246504-85246523 | MS.gene32602:CDS | 40.0% | |
| GCCAAACTCTTTGTATGCAT+GGG | + | chr3.1:85246290-85246309 | None:intergenic | 40.0% | |
| TAACAGCTTCTACAAACTGC+AGG | - | chr3.1:85245937-85245956 | MS.gene32602:CDS | 40.0% | |
| TAAGGCTGTAAATCCAGCTA+TGG | + | chr3.1:85247102-85247121 | None:intergenic | 40.0% | |
| TACTCCAAGCTTTCCAACTT+AGG | - | chr3.1:85247459-85247478 | MS.gene32602:CDS | 40.0% | |
| TAGGCATCTCCGTTATCAAA+AGG | - | chr3.1:85246819-85246838 | MS.gene32602:CDS | 40.0% | |
| TCAAGTTCCTGAAGATGGTT+AGG | + | chr3.1:85247248-85247267 | None:intergenic | 40.0% | |
| TCCCATGCATACAAAGAGTT+TGG | - | chr3.1:85246286-85246305 | MS.gene32602:intron | 40.0% | |
| TCTACAAACTGCAGGATATG+TGG | - | chr3.1:85245945-85245964 | MS.gene32602:CDS | 40.0% | |
| TCTTGCATTTCAATTCAGGG+AGG | - | chr3.1:85245536-85245555 | MS.gene32602:intron | 40.0% | |
| TGCCAAACTCTTTGTATGCA+TGG | + | chr3.1:85246291-85246310 | None:intergenic | 40.0% | |
| TGGATTTACAGCCTTACAGT+TGG | - | chr3.1:85247106-85247125 | MS.gene32602:CDS | 40.0% | |
| TTATCACTGGACAGTAGTGA+AGG | - | chr3.1:85245699-85245718 | MS.gene32602:CDS | 40.0% | |
| ! | AATCCAGCTATGGTCTTGAA+TGG | + | chr3.1:85247092-85247111 | None:intergenic | 40.0% |
| ! | ATATTTTGCATCAAGGCTCC+TGG | - | chr3.1:85246338-85246357 | MS.gene32602:intron | 40.0% |
| ! | ATGGCAATTGATAGTCTTCC+TGG | - | chr3.1:85246878-85246897 | MS.gene32602:CDS | 40.0% |
| ! | ATTCCAGCTTTGATGATAGC+AGG | - | chr3.1:85246001-85246020 | MS.gene32602:intron | 40.0% |
| ! | CCACGTGATAGTGATAATGA+TGG | - | chr3.1:85247511-85247530 | MS.gene32602:CDS | 40.0% |
| ! | CTTGAGCACTGTAGAAACAT+TGG | - | chr3.1:85244744-85244763 | MS.gene32602:intron | 40.0% |
| ! | GACGAAGGATTTTCAACCTT+GGG | + | chr3.1:85245295-85245314 | None:intergenic | 40.0% |
| ! | GCTTGAATATCTTTGGAAGG+AGG | + | chr3.1:85247226-85247245 | None:intergenic | 40.0% |
| ! | TGGCAATTGATAGTCTTCCT+GGG | - | chr3.1:85246879-85246898 | MS.gene32602:CDS | 40.0% |
| !! | ATACCTACCTCGGTTTTATG+GGG | - | chr3.1:85246842-85246861 | MS.gene32602:CDS | 40.0% |
| !! | CGAGGCTTTATTGCAGATTA+TGG | - | chr3.1:85245562-85245581 | MS.gene32602:intron | 40.0% |
| !! | GATACCTACCTCGGTTTTAT+GGG | - | chr3.1:85246841-85246860 | MS.gene32602:CDS | 40.0% |
| !! | TACCAAGCTCTTTCTAGCTT+GGG | - | chr3.1:85244900-85244919 | MS.gene32602:CDS | 40.0% |
| !!! | GGCCAACCTTTGTTGATTTT+AGG | - | chr3.1:85244808-85244827 | MS.gene32602:intron | 40.0% |
| AAGTTTCAACTCTCCCCTGT+TGG | + | chr3.1:85247584-85247603 | None:intergenic | 45.0% | |
| AATTGCAATTCCTCCGACGA+AGG | + | chr3.1:85245310-85245329 | None:intergenic | 45.0% | |
| ACTCTGATATGTGGTCTCCT+TGG | - | chr3.1:85246230-85246249 | MS.gene32602:intron | 45.0% | |
| AGAGTTTGGCAGTTCTTAGG+AGG | - | chr3.1:85246300-85246319 | MS.gene32602:intron | 45.0% | |
| AGTGGACAAAACAGCCTTCT+AGG | + | chr3.1:85245658-85245677 | None:intergenic | 45.0% | |
| ATAAAGAGATGCAGGTTCCC+AGG | + | chr3.1:85245683-85245702 | None:intergenic | 45.0% | |
| ATCCATTGGTATACCGCCAT+TGG | + | chr3.1:85245333-85245352 | None:intergenic | 45.0% | |
| ATTGTTTGAACCACAGGGAC+TGG | - | chr3.1:85245252-85245271 | MS.gene32602:CDS | 45.0% | |
| ATTTGCAGCTGATCCGAAAG+AGG | - | chr3.1:85246416-85246435 | MS.gene32602:intron | 45.0% | |
| CAAACTGCAGGATATGTGGA+AGG | - | chr3.1:85245949-85245968 | MS.gene32602:CDS | 45.0% | |
| CAGTACGTAGTATGTCACTC+AGG | - | chr3.1:85247306-85247325 | MS.gene32602:CDS | 45.0% | |
| CGGAGGAATTGCAATTCCAA+TGG | - | chr3.1:85245314-85245333 | MS.gene32602:CDS | 45.0% | |
| CTGTTGTTCCATGCATTCCT+TGG | + | chr3.1:85246455-85246474 | None:intergenic | 45.0% | |
| GACATACTACGTACTGCAGA+TGG | + | chr3.1:85247302-85247321 | None:intergenic | 45.0% | |
| GATGAGATGACAACCAACAG+GGG | - | chr3.1:85247568-85247587 | MS.gene32602:intron | 45.0% | |
| GGATGAGATGACAACCAACA+GGG | - | chr3.1:85247567-85247586 | MS.gene32602:intron | 45.0% | |
| GTACCATTCAAGACCATAGC+TGG | - | chr3.1:85247086-85247105 | MS.gene32602:CDS | 45.0% | |
| GTCCAGTGATAAAGAGATGC+AGG | + | chr3.1:85245691-85245710 | None:intergenic | 45.0% | |
| TAAAGAGATGCAGGTTCCCA+GGG | + | chr3.1:85245682-85245701 | None:intergenic | 45.0% | |
| TATCCCCATAAAACCGAGGT+AGG | + | chr3.1:85246848-85246867 | None:intergenic | 45.0% | |
| TCGGATCAGCTGCAAATCAA+TGG | + | chr3.1:85246413-85246432 | None:intergenic | 45.0% | |
| TCTTCCTGGGAATCAGTTCT+GGG | - | chr3.1:85246892-85246911 | MS.gene32602:CDS | 45.0% | |
| TCTTGAACAAGTCTCGTGTC+TGG | + | chr3.1:85246588-85246607 | None:intergenic | 45.0% | |
| TGATACCAAGGGTTGTGCAA+TGG | - | chr3.1:85246691-85246710 | MS.gene32602:intron | 45.0% | |
| TGGATGAGATGACAACCAAC+AGG | - | chr3.1:85247566-85247585 | MS.gene32602:intron | 45.0% | |
| TGGTACTGTCTCCACAAATG+AGG | + | chr3.1:85247072-85247091 | None:intergenic | 45.0% | |
| TGTGGAAGGACTCCATTTGA+AGG | + | chr3.1:85246263-85246282 | None:intergenic | 45.0% | |
| TGTGTTGCAGGGTTTGTGTT+TGG | - | chr3.1:85245024-85245043 | MS.gene32602:CDS | 45.0% | |
| TGTTCTCCGAAAGCAATGAC+AGG | + | chr3.1:85244700-85244719 | None:intergenic | 45.0% | |
| TTCCAAGTGGTGTTCCTAGA+AGG | - | chr3.1:85245641-85245660 | MS.gene32602:intron | 45.0% | |
| TTCCAATGGCGGTATACCAA+TGG | - | chr3.1:85245328-85245347 | MS.gene32602:CDS | 45.0% | |
| TTGCAGGGTTTGTGTTTGGA+CGG | - | chr3.1:85245028-85245047 | MS.gene32602:CDS | 45.0% | |
| TTTGCAGCTGATCCGAAAGA+GGG | - | chr3.1:85246417-85246436 | MS.gene32602:intron | 45.0% | |
| TTTGTATGCATGGGAGACTG+TGG | + | chr3.1:85246281-85246300 | None:intergenic | 45.0% | |
| ! | AATTACTTGTAACGCCGGCT+TGG | + | chr3.1:85246944-85246963 | None:intergenic | 45.0% |
| ! | CGACGAAGGATTTTCAACCT+TGG | + | chr3.1:85245296-85245315 | None:intergenic | 45.0% |
| ! | CGCTTTTCACAACCCTCTTT+CGG | + | chr3.1:85246432-85246451 | None:intergenic | 45.0% |
| ! | GGATACCTACCTCGGTTTTA+TGG | - | chr3.1:85246840-85246859 | MS.gene32602:CDS | 45.0% |
| ! | TTCCAGTGATGGTAGTGTTG+TGG | - | chr3.1:85245587-85245606 | MS.gene32602:intron | 45.0% |
| ! | TTGGCATCTACTGCCATTTG+TGG | - | chr3.1:85244763-85244782 | MS.gene32602:intron | 45.0% |
| !! | ATTACTTGTAACGCCGGCTT+GGG | + | chr3.1:85246943-85246962 | None:intergenic | 45.0% |
| !! | GTACCAAGCTCTTTCTAGCT+TGG | - | chr3.1:85244899-85244918 | MS.gene32602:CDS | 45.0% |
| AAGAGCTTGGTACCCAGTTG+AGG | + | chr3.1:85244892-85244911 | None:intergenic | 50.0% | |
| AGCCCAAGCTAGAAAGAGCT+TGG | + | chr3.1:85244905-85244924 | None:intergenic | 50.0% | |
| AGGTTCCATTGCACAACCCT+TGG | + | chr3.1:85246699-85246718 | None:intergenic | 50.0% | |
| CAATCAGGAGGGACTGCAAT+AGG | + | chr3.1:85246787-85246806 | None:intergenic | 50.0% | |
| CATTTGAAGGAGGAAGGCCA+AGG | + | chr3.1:85246250-85246269 | None:intergenic | 50.0% | |
| CTATTGCAGTCCCTCCTGAT+TGG | - | chr3.1:85246785-85246804 | MS.gene32602:CDS | 50.0% | |
| GAAAGCAATGACAGGAAGCG+CGG | + | chr3.1:85244692-85244711 | None:intergenic | 50.0% | |
| GCGCTTCCTGTCATTGCTTT+CGG | - | chr3.1:85244691-85244710 | MS.gene32602:intron | 50.0% | |
| GGAAGGACTCCATTTGAAGG+AGG | + | chr3.1:85246260-85246279 | None:intergenic | 50.0% | |
| GGACTCCATTTGAAGGAGGA+AGG | + | chr3.1:85246256-85246275 | None:intergenic | 50.0% | |
| GGTTGAAAATCCTTCGTCGG+AGG | - | chr3.1:85245297-85245316 | MS.gene32602:CDS | 50.0% | |
| GTCACATGGATACCGATAGG+TGG | - | chr3.1:85247152-85247171 | MS.gene32602:intron | 50.0% | |
| GTCCACAACACTACCATCAC+TGG | + | chr3.1:85245592-85245611 | None:intergenic | 50.0% | |
| GTCTTCCTGGGAATCAGTTC+TGG | - | chr3.1:85246891-85246910 | MS.gene32602:CDS | 50.0% | |
| TATGCATGGGAGACTGTGGA+AGG | + | chr3.1:85246277-85246296 | None:intergenic | 50.0% | |
| TCATAGCGTGGCTTCTCAGA+TGG | - | chr3.1:85246039-85246058 | MS.gene32602:intron | 50.0% | |
| TGTTCTGTTTCGGGGTCACA+TGG | - | chr3.1:85247138-85247157 | MS.gene32602:CDS | 50.0% | |
| TTCAATTCAGGGAGGCTACG+AGG | - | chr3.1:85245544-85245563 | MS.gene32602:intron | 50.0% | |
| TTTGGCAGTTCTTAGGAGGC+AGG | - | chr3.1:85246304-85246323 | MS.gene32602:intron | 50.0% | |
| ! | AGCCTTCTAGGAACACCACT+TGG | + | chr3.1:85245646-85245665 | None:intergenic | 50.0% |
| ! | CTTGGCCTTCCTCCTTCAAA+TGG | - | chr3.1:85246248-85246267 | MS.gene32602:intron | 50.0% |
| ! | CTTTCCCAGAACTGATTCCC+AGG | + | chr3.1:85246899-85246918 | None:intergenic | 50.0% |
| ! | GGTAGGCAGATGGCTTTTGA+AGG | + | chr3.1:85246084-85246103 | None:intergenic | 50.0% |
| ! | TTTGAACCACAGGGACTGGT+AGG | - | chr3.1:85245256-85245275 | MS.gene32602:CDS | 50.0% |
| !! | AAGCTCTTTCTAGCTTGGGC+TGG | - | chr3.1:85244904-85244923 | MS.gene32602:CDS | 50.0% |
| !! | CTGGGAATCAGTTCTGGGAA+AGG | - | chr3.1:85246897-85246916 | MS.gene32602:CDS | 50.0% |
| !! | GAAAAGCGCCAAGGAATGCA+TGG | - | chr3.1:85246444-85246463 | MS.gene32602:intron | 50.0% |
| !! | GCTGTTTTGTCCACTTCCCT+GGG | - | chr3.1:85245663-85245682 | MS.gene32602:CDS | 50.0% |
| !! | TCTTTCTAGCTTGGGCTGGT+TGG | - | chr3.1:85244908-85244927 | MS.gene32602:CDS | 50.0% |
| !! | TTACTTGTAACGCCGGCTTG+GGG | + | chr3.1:85246942-85246961 | None:intergenic | 50.0% |
| ACACCACTTGGAACGTCGTC+AGG | + | chr3.1:85245634-85245653 | None:intergenic | 55.0% | |
| ATGCCTGACGACGTTCCAAG+TGG | - | chr3.1:85245628-85245647 | MS.gene32602:intron | 55.0% | |
| CAGGAGGGACTGCAATAGGT+TGG | + | chr3.1:85246783-85246802 | None:intergenic | 55.0% | |
| GGGGTCACATGGATACCGAT+AGG | - | chr3.1:85247149-85247168 | MS.gene32602:intron | 55.0% | |
| TGGGTCTGCGCAATCTGTTC+CGG | - | chr3.1:85244545-85244564 | MS.gene32602:CDS | 55.0% | |
| !! | GAGGGTTGTGAAAAGCGCCA+AGG | - | chr3.1:85246435-85246454 | MS.gene32602:intron | 55.0% |
| !! | GGCTGTTTTGTCCACTTCCC+TGG | - | chr3.1:85245662-85245681 | MS.gene32602:CDS | 55.0% |
| AACTCGCCTACCAGTCCCTG+TGG | + | chr3.1:85245265-85245284 | None:intergenic | 60.0% | |
| AGGCGAGTTCAGCACTCCCA+AGG | - | chr3.1:85245276-85245295 | MS.gene32602:CDS | 60.0% | |
| GATGCAGGTTCCCAGGGAAG+TGG | + | chr3.1:85245676-85245695 | None:intergenic | 60.0% | |
| GCGCAATCTGTTCCGGCGTT+AGG | - | chr3.1:85244552-85244571 | MS.gene32602:CDS | 60.0% | |
| TCCTCTTCGTCACCCCAAGC+CGG | - | chr3.1:85246927-85246946 | MS.gene32602:intron | 60.0% | |
| !! | GCCGGCTTGGGGTGACGAAG+AGG | + | chr3.1:85246931-85246950 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85244479 | 85247720 | 85244479 | ID=MS.gene32602 |
| chr3.1 | mRNA | 85244479 | 85247720 | 85244479 | ID=MS.gene32602.t1;Parent=MS.gene32602 |
| chr3.1 | exon | 85247626 | 85247720 | 85247626 | ID=MS.gene32602.t1.exon1;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85247626 | 85247720 | 85247626 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85247270 | 85247545 | 85247270 | ID=MS.gene32602.t1.exon2;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85247270 | 85247545 | 85247270 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85247027 | 85247165 | 85247027 | ID=MS.gene32602.t1.exon3;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85247027 | 85247165 | 85247027 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85246766 | 85246931 | 85246766 | ID=MS.gene32602.t1.exon4;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85246766 | 85246931 | 85246766 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85246479 | 85246645 | 85246479 | ID=MS.gene32602.t1.exon5;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85246479 | 85246645 | 85246479 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85246067 | 85246240 | 85246067 | ID=MS.gene32602.t1.exon6;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85246067 | 85246240 | 85246067 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85245874 | 85245969 | 85245874 | ID=MS.gene32602.t1.exon7;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85245874 | 85245969 | 85245874 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85245659 | 85245775 | 85245659 | ID=MS.gene32602.t1.exon8;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85245659 | 85245775 | 85245659 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85245242 | 85245549 | 85245242 | ID=MS.gene32602.t1.exon9;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85245242 | 85245549 | 85245242 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85244871 | 85245150 | 85244871 | ID=MS.gene32602.t1.exon10;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85244871 | 85245150 | 85244871 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| chr3.1 | exon | 85244479 | 85244697 | 85244479 | ID=MS.gene32602.t1.exon11;Parent=MS.gene32602.t1 |
| chr3.1 | CDS | 85244479 | 85244697 | 85244479 | ID=cds.MS.gene32602.t1;Parent=MS.gene32602.t1 |
| Gene Sequence |
| Protein sequence |
