Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32720.t1 | XP_003609734.2 | 81.6 | 163 | 16 | 2 | 52 | 200 | 227 | 389 | 2.60E-68 | 268.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32720.t1 | Q9FJ06 | 50.3 | 167 | 67 | 4 | 49 | 200 | 210 | 375 | 6.9e-38 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32720.t1 | G7JMR6 | 81.6 | 163 | 16 | 2 | 52 | 200 | 227 | 389 | 1.9e-68 | 268.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049343 | MS.gene32720 | 0.820107 | 8.17E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene32720 | 0.802621 | 5.14E-49 | -1.69E-46 |
| MS.gene051678 | MS.gene32720 | 0.807759 | 4.32E-50 | -1.69E-46 |
| MS.gene052926 | MS.gene32720 | 0.823494 | 1.34E-53 | -1.69E-46 |
| MS.gene053054 | MS.gene32720 | -0.808269 | 3.36E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene32720 | 0.803234 | 3.84E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene32720 | 0.815033 | 1.14E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene32720 | 0.800678 | 1.29E-48 | -1.69E-46 |
| MS.gene056091 | MS.gene32720 | 0.807312 | 5.38E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene32720 | 0.81137 | 7.24E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene32720 | 0.810578 | 1.08E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene32720 | 0.822553 | 2.23E-53 | -1.69E-46 |
| MS.gene060879 | MS.gene32720 | 0.802304 | 5.98E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32720.t1 | MTR_4g121560 | 81.098 | 164 | 17 | 2 | 51 | 200 | 226 | 389 | 1.03e-89 | 271 |
| MS.gene32720.t1 | MTR_7g093450 | 47.134 | 157 | 69 | 2 | 57 | 200 | 366 | 521 | 4.79e-45 | 157 |
| MS.gene32720.t1 | MTR_0136s0010 | 39.450 | 218 | 98 | 6 | 14 | 200 | 229 | 443 | 3.00e-44 | 154 |
| MS.gene32720.t1 | MTR_8g069790 | 47.134 | 157 | 68 | 2 | 57 | 200 | 296 | 450 | 7.89e-43 | 150 |
| MS.gene32720.t1 | MTR_5g059400 | 41.667 | 168 | 83 | 3 | 47 | 200 | 283 | 449 | 1.21e-42 | 150 |
| MS.gene32720.t1 | MTR_1g116130 | 41.667 | 168 | 83 | 3 | 47 | 200 | 283 | 449 | 1.21e-42 | 150 |
| MS.gene32720.t1 | MTR_5g033800 | 45.223 | 157 | 71 | 2 | 57 | 200 | 263 | 417 | 1.79e-40 | 144 |
| MS.gene32720.t1 | MTR_4g126950 | 39.490 | 157 | 81 | 2 | 57 | 200 | 227 | 382 | 5.47e-34 | 125 |
| MS.gene32720.t1 | MTR_5g033800 | 50.467 | 107 | 51 | 1 | 57 | 163 | 263 | 367 | 1.09e-32 | 121 |
| MS.gene32720.t1 | MTR_7g029590 | 52.459 | 122 | 30 | 2 | 93 | 190 | 1 | 118 | 2.57e-30 | 111 |
| MS.gene32720.t1 | MTR_1g013640 | 94.545 | 55 | 2 | 1 | 3 | 57 | 61 | 114 | 2.87e-29 | 106 |
| MS.gene32720.t1 | MTR_7g109550 | 39.103 | 156 | 79 | 3 | 58 | 200 | 256 | 408 | 6.49e-28 | 109 |
| MS.gene32720.t1 | MTR_3g464570 | 31.098 | 164 | 86 | 3 | 58 | 200 | 51 | 208 | 1.11e-19 | 84.7 |
| MS.gene32720.t1 | MTR_3g464570 | 31.098 | 164 | 86 | 3 | 58 | 200 | 155 | 312 | 4.34e-19 | 84.3 |
| MS.gene32720.t1 | MTR_1g058380 | 26.115 | 157 | 103 | 1 | 57 | 200 | 175 | 331 | 1.59e-16 | 77.4 |
| MS.gene32720.t1 | MTR_2g022560 | 28.947 | 152 | 94 | 2 | 41 | 179 | 200 | 350 | 1.88e-16 | 77.0 |
| MS.gene32720.t1 | MTR_7g094750 | 29.412 | 153 | 92 | 3 | 41 | 179 | 194 | 344 | 2.25e-16 | 77.0 |
| MS.gene32720.t1 | MTR_4g087730 | 27.184 | 206 | 115 | 6 | 21 | 200 | 110 | 306 | 3.52e-16 | 75.9 |
| MS.gene32720.t1 | MTR_4g088030 | 26.220 | 164 | 96 | 4 | 53 | 200 | 140 | 294 | 9.60e-15 | 72.0 |
| MS.gene32720.t1 | MTR_1g112210 | 27.389 | 157 | 99 | 3 | 53 | 200 | 152 | 302 | 1.15e-14 | 71.6 |
| MS.gene32720.t1 | MTR_1g050448 | 25.157 | 159 | 105 | 2 | 51 | 200 | 157 | 310 | 1.59e-14 | 71.2 |
| MS.gene32720.t1 | MTR_3g090120 | 34.286 | 105 | 69 | 0 | 59 | 163 | 253 | 357 | 2.59e-14 | 70.9 |
| MS.gene32720.t1 | MTR_2g015720 | 27.215 | 158 | 94 | 5 | 57 | 200 | 152 | 302 | 4.50e-14 | 70.1 |
| MS.gene32720.t1 | MTR_5g071350 | 32.075 | 106 | 66 | 1 | 58 | 163 | 170 | 269 | 6.44e-14 | 69.7 |
| MS.gene32720.t1 | MTR_1g112210 | 27.632 | 152 | 95 | 4 | 58 | 200 | 170 | 315 | 1.40e-13 | 68.6 |
| MS.gene32720.t1 | MTR_2g073510 | 30.233 | 129 | 74 | 3 | 87 | 200 | 169 | 296 | 2.76e-13 | 67.8 |
| MS.gene32720.t1 | MTR_7g094750 | 29.839 | 124 | 84 | 2 | 41 | 163 | 194 | 315 | 2.97e-13 | 67.4 |
| MS.gene32720.t1 | MTR_8g093530 | 32.075 | 106 | 72 | 0 | 58 | 163 | 209 | 314 | 4.00e-13 | 67.4 |
| MS.gene32720.t1 | MTR_2g073500 | 31.429 | 140 | 81 | 4 | 58 | 190 | 148 | 279 | 7.69e-13 | 66.2 |
| MS.gene32720.t1 | MTR_4g014440 | 27.053 | 207 | 121 | 8 | 17 | 200 | 137 | 336 | 2.97e-12 | 65.1 |
| MS.gene32720.t1 | MTR_2g091175 | 27.848 | 158 | 93 | 4 | 57 | 200 | 161 | 311 | 9.85e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32720.t1 | AT5G49340 | 50.299 | 167 | 67 | 4 | 49 | 200 | 210 | 375 | 9.88e-47 | 159 |
| MS.gene32720.t1 | AT3G12060 | 45.223 | 157 | 72 | 2 | 57 | 200 | 314 | 469 | 2.95e-44 | 155 |
| MS.gene32720.t1 | AT5G06700 | 44.586 | 157 | 73 | 2 | 57 | 200 | 373 | 528 | 2.53e-43 | 153 |
| MS.gene32720.t1 | AT1G60790 | 46.951 | 164 | 72 | 3 | 51 | 200 | 303 | 465 | 1.58e-41 | 147 |
| MS.gene32720.t1 | AT5G20590 | 38.217 | 157 | 83 | 2 | 57 | 200 | 260 | 415 | 1.42e-34 | 127 |
| MS.gene32720.t1 | AT3G62390 | 37.179 | 156 | 82 | 3 | 58 | 200 | 257 | 409 | 1.86e-30 | 116 |
| MS.gene32720.t1 | AT5G20590 | 40.952 | 105 | 61 | 1 | 57 | 161 | 260 | 363 | 1.00e-24 | 99.8 |
| MS.gene32720.t1 | AT3G62390 | 40.566 | 106 | 61 | 1 | 58 | 163 | 257 | 360 | 7.01e-24 | 97.8 |
| MS.gene32720.t1 | AT5G19160 | 32.386 | 176 | 100 | 4 | 27 | 188 | 191 | 361 | 9.60e-24 | 97.8 |
| MS.gene32720.t1 | AT5G19160 | 34.783 | 138 | 84 | 3 | 27 | 163 | 191 | 323 | 1.26e-21 | 90.9 |
| MS.gene32720.t1 | AT5G58600 | 31.765 | 170 | 83 | 5 | 35 | 185 | 163 | 318 | 2.52e-21 | 90.9 |
| MS.gene32720.t1 | AT3G06080 | 30.539 | 167 | 97 | 4 | 27 | 179 | 195 | 356 | 1.73e-19 | 85.9 |
| MS.gene32720.t1 | AT5G58600 | 33.846 | 130 | 71 | 3 | 35 | 163 | 163 | 278 | 3.02e-19 | 83.6 |
| MS.gene32720.t1 | AT3G06080 | 31.884 | 138 | 88 | 3 | 27 | 163 | 195 | 327 | 1.38e-17 | 79.7 |
| MS.gene32720.t1 | AT3G11570 | 26.974 | 152 | 98 | 1 | 62 | 200 | 205 | 356 | 1.16e-16 | 77.8 |
| MS.gene32720.t1 | AT1G29050 | 24.272 | 206 | 122 | 5 | 21 | 200 | 126 | 323 | 1.33e-15 | 74.3 |
| MS.gene32720.t1 | AT1G48880 | 28.750 | 160 | 101 | 2 | 4 | 163 | 193 | 339 | 3.41e-15 | 73.6 |
| MS.gene32720.t1 | AT1G78710 | 28.155 | 206 | 114 | 8 | 21 | 200 | 102 | 299 | 9.80e-15 | 72.0 |
| MS.gene32720.t1 | AT5G06230 | 27.044 | 159 | 102 | 2 | 41 | 186 | 171 | 328 | 3.53e-14 | 70.5 |
| MS.gene32720.t1 | AT5G06230 | 27.044 | 159 | 102 | 2 | 41 | 186 | 130 | 287 | 3.65e-14 | 70.5 |
| MS.gene32720.t1 | AT2G31110 | 24.845 | 161 | 96 | 4 | 56 | 200 | 7 | 158 | 1.66e-13 | 67.0 |
| MS.gene32720.t1 | AT2G31110 | 25.625 | 160 | 94 | 4 | 57 | 200 | 156 | 306 | 2.38e-13 | 68.2 |
| MS.gene32720.t1 | AT2G30900 | 31.875 | 160 | 82 | 6 | 59 | 200 | 158 | 308 | 6.90e-12 | 63.9 |
| MS.gene32720.t1 | AT3G54260 | 24.812 | 133 | 89 | 3 | 58 | 184 | 162 | 289 | 1.69e-11 | 62.8 |
| MS.gene32720.t1 | AT2G30010 | 29.060 | 117 | 75 | 3 | 49 | 163 | 160 | 270 | 6.48e-11 | 60.8 |
| MS.gene32720.t1 | AT5G06230 | 27.731 | 119 | 85 | 1 | 41 | 159 | 171 | 288 | 6.58e-11 | 60.8 |
| MS.gene32720.t1 | AT2G30010 | 29.060 | 117 | 75 | 3 | 49 | 163 | 203 | 313 | 8.31e-11 | 60.8 |
Find 38 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATGTTAATTAGGATTA+TGG | 0.236100 | 3.1:-83391778 | MS.gene32720:intron |
| TTCCATTCTTGTACAAGAAA+TGG | 0.283805 | 3.1:+83391730 | None:intergenic |
| GTGCAGGATTTGATTGATAA+AGG | 0.344148 | 3.1:-83392593 | MS.gene32720:intron |
| CACTGCCCCTTCAGATTCAT+AGG | 0.352061 | 3.1:+83392857 | None:intergenic |
| TCCATTCTTGTACAAGAAAT+GGG | 0.352802 | 3.1:+83391731 | None:intergenic |
| TGGGGATTTCACAATGTCTA+TGG | 0.361987 | 3.1:+83391750 | None:intergenic |
| CATAGACATGATTACCTTGC+TGG | 0.366063 | 3.1:+83391468 | None:intergenic |
| CCCCATTTCTTGTACAAGAA+TGG | 0.370184 | 3.1:-83391732 | MS.gene32720:CDS |
| AAGATAGCTTTCATTTGTAA+TGG | 0.380265 | 3.1:+83391178 | None:intergenic |
| TTCCTCAAAGAGAAACTCTT+AGG | 0.383679 | 3.1:-83391687 | MS.gene32720:CDS |
| AGCCTAAGAGTTTCTCTTTG+AGG | 0.386378 | 3.1:+83391685 | None:intergenic |
| AGATAGCTTTCATTTGTAAT+GGG | 0.396515 | 3.1:+83391179 | None:intergenic |
| TCATCATCTTCACTAGTAAA+GGG | 0.406935 | 3.1:+83392509 | None:intergenic |
| CGCATTCACTAACTTCAAAC+AGG | 0.413377 | 3.1:-83392486 | MS.gene32720:intron |
| TCGACAATTCCCATTGTCAA+TGG | 0.442380 | 3.1:+83391146 | None:intergenic |
| GTCATCATCTTCACTAGTAA+AGG | 0.461764 | 3.1:+83392508 | None:intergenic |
| TGAGCTTCTTGCTGCTAAGC+AGG | 0.466569 | 3.1:-83392831 | MS.gene32720:CDS |
| CATTTAAGACATGGGCTAAG+TGG | 0.503496 | 3.1:-83391412 | MS.gene32720:CDS |
| TAGAAATTTAGTGCAGCGTA+TGG | 0.518555 | 3.1:-83392549 | MS.gene32720:CDS |
| AACTCTGGAGGTAAATGTGA+TGG | 0.519732 | 3.1:-83391212 | MS.gene32720:CDS |
| GGCAAACCCTATGAATCTGA+AGG | 0.520434 | 3.1:-83392864 | None:intergenic |
| GCAGCATATCCATTGACAAT+GGG | 0.531435 | 3.1:-83391155 | MS.gene32720:CDS |
| ATTTAAGACATGGGCTAAGT+GGG | 0.550470 | 3.1:-83391411 | MS.gene32720:CDS |
| ACTCTGGAGGTAAATGTGAT+GGG | 0.561757 | 3.1:-83391211 | MS.gene32720:CDS |
| CCATTCTTGTACAAGAAATG+GGG | 0.584992 | 3.1:+83391732 | None:intergenic |
| TACAACAAGCATTTAAGACA+TGG | 0.597685 | 3.1:-83391421 | MS.gene32720:CDS |
| AGCATCATAATATTGAGACT+TGG | 0.603108 | 3.1:+83391645 | None:intergenic |
| TGCAGCATATCCATTGACAA+TGG | 0.605023 | 3.1:-83391156 | MS.gene32720:CDS |
| CAGCGTATGGAATCATCTGT+GGG | 0.612923 | 3.1:-83392536 | MS.gene32720:CDS |
| GCAAACCCTATGAATCTGAA+GGG | 0.614234 | 3.1:-83392863 | None:intergenic |
| ACAACAAGCATTTAAGACAT+GGG | 0.616597 | 3.1:-83391420 | MS.gene32720:CDS |
| GCAGCGTATGGAATCATCTG+TGG | 0.620380 | 3.1:-83392537 | MS.gene32720:CDS |
| CATCATCTTCACTAGTAAAG+GGG | 0.629037 | 3.1:+83392510 | None:intergenic |
| CTCTGGAGGTAAATGTGATG+GGG | 0.640338 | 3.1:-83391210 | MS.gene32720:CDS |
| AGTAGAAACTACTTCCAGCA+AGG | 0.654638 | 3.1:-83391482 | MS.gene32720:CDS |
| CGTGTGCTTGCTATCAACTG+TGG | 0.660073 | 3.1:+83391382 | None:intergenic |
| CAAACCCTATGAATCTGAAG+GGG | 0.696980 | 3.1:-83392862 | None:intergenic |
| GCTTCTTGCTGCTAAGCAGG+TGG | 0.701727 | 3.1:-83392828 | MS.gene32720:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATAAGTAGTTCAA+AGG | - | chr3.1:83392449-83392468 | MS.gene32720:intron | 15.0% |
| !! | TTGTAATAATATACATATGT+TGG | - | chr3.1:83391314-83391333 | MS.gene32720:intron | 15.0% |
| !! | AATCATGAAAAGACAAAAAA+TGG | - | chr3.1:83392392-83392411 | MS.gene32720:intron | 20.0% |
| !! | ATCATGAAAAGACAAAAAAT+GGG | - | chr3.1:83392393-83392412 | MS.gene32720:intron | 20.0% |
| !!! | AATTCTAGAAATGATATACA+AGG | + | chr3.1:83392019-83392038 | None:intergenic | 20.0% |
| !!! | ATTCTAGAAATGATATACAA+GGG | + | chr3.1:83392018-83392037 | None:intergenic | 20.0% |
| ! | AAACTACTATACTAACTTAC+AGG | + | chr3.1:83392064-83392083 | None:intergenic | 25.0% |
| ! | AAGAACACACATTCAAATAT+AGG | + | chr3.1:83391573-83391592 | None:intergenic | 25.0% |
| ! | AAGATAGCTTTCATTTGTAA+TGG | + | chr3.1:83392806-83392825 | None:intergenic | 25.0% |
| ! | AGATAGCTTTCATTTGTAAT+GGG | + | chr3.1:83392805-83392824 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTGACTGTAATT+TGG | - | chr3.1:83392074-83392093 | MS.gene32720:intron | 25.0% |
| ! | TAATATAACAGTGACAATGT+CGG | - | chr3.1:83391246-83391265 | MS.gene32720:intron | 25.0% |
| ! | TACACTACTAGATTAAAGTT+AGG | - | chr3.1:83391934-83391953 | MS.gene32720:intron | 25.0% |
| ! | TAGTTAAGTAATTGCTTCTA+TGG | - | chr3.1:83392720-83392739 | MS.gene32720:intron | 25.0% |
| ! | TATGTAGAATTGGATTTGAA+TGG | - | chr3.1:83391222-83391241 | MS.gene32720:CDS | 25.0% |
| ! | TGTGATGTTAATTAGGATTA+TGG | - | chr3.1:83392203-83392222 | MS.gene32720:intron | 25.0% |
| ! | TTACATGAACAAAATCAAAG+AGG | + | chr3.1:83391675-83391694 | None:intergenic | 25.0% |
| ! | TTGTCAAATAGCAGTTATAT+CGG | - | chr3.1:83391802-83391821 | MS.gene32720:intron | 25.0% |
| !! | ATACATATGTTGGTTGAATT+GGG | - | chr3.1:83391324-83391343 | MS.gene32720:intron | 25.0% |
| !! | GATATAATCATTTTCAACAC+AGG | - | chr3.1:83392359-83392378 | MS.gene32720:intron | 25.0% |
| !! | TATACATATGTTGGTTGAAT+TGG | - | chr3.1:83391323-83391342 | MS.gene32720:intron | 25.0% |
| !! | TGTTATACTTCAATGCATTT+TGG | - | chr3.1:83391190-83391209 | MS.gene32720:CDS | 25.0% |
| AATATAACAGTGACAATGTC+GGG | - | chr3.1:83391247-83391266 | MS.gene32720:intron | 30.0% | |
| AGATGCATTAGTTAGTCATA+AGG | - | chr3.1:83391710-83391729 | MS.gene32720:CDS | 30.0% | |
| AGCATCATAATATTGAGACT+TGG | + | chr3.1:83392339-83392358 | None:intergenic | 30.0% | |
| ATGCATACATGAATGAGTAA+AGG | + | chr3.1:83391631-83391650 | None:intergenic | 30.0% | |
| GAAATGATATACAAGGGAAA+AGG | + | chr3.1:83392012-83392031 | None:intergenic | 30.0% | |
| GATGTGTTGTGATGTTAATT+AGG | - | chr3.1:83392196-83392215 | MS.gene32720:intron | 30.0% | |
| TAGTTTGACTGTAATTTGGT+GGG | - | chr3.1:83392078-83392097 | MS.gene32720:intron | 30.0% | |
| TCATCATCTTCACTAGTAAA+GGG | + | chr3.1:83391475-83391494 | None:intergenic | 30.0% | |
| TCCATTCTTGTACAAGAAAT+GGG | + | chr3.1:83392253-83392272 | None:intergenic | 30.0% | |
| TTCCATTCTTGTACAAGAAA+TGG | + | chr3.1:83392254-83392273 | None:intergenic | 30.0% | |
| TTGAATTGGGAATAAGATCT+AGG | - | chr3.1:83391337-83391356 | MS.gene32720:intron | 30.0% | |
| ! | ACAACAAGCATTTAAGACAT+GGG | - | chr3.1:83392561-83392580 | MS.gene32720:CDS | 30.0% |
| ! | TACAACAAGCATTTAAGACA+TGG | - | chr3.1:83392560-83392579 | MS.gene32720:CDS | 30.0% |
| ! | TATACTTCAATGCATTTTGG+TGG | - | chr3.1:83391193-83391212 | MS.gene32720:CDS | 30.0% |
| ! | TTTTGCTTGCATAAGGTTTA+AGG | - | chr3.1:83392156-83392175 | MS.gene32720:intron | 30.0% |
| !! | ATACTTCAATGCATTTTGGT+GGG | - | chr3.1:83391194-83391213 | MS.gene32720:CDS | 30.0% |
| !!! | CTTTGATTTGCCTTTTTTGT+GGG | - | chr3.1:83391590-83391609 | MS.gene32720:CDS | 30.0% |
| !!! | TCTTTGATTTGCCTTTTTTG+TGG | - | chr3.1:83391589-83391608 | MS.gene32720:CDS | 30.0% |
| AAATCACTATAGTGCTGTAG+TGG | - | chr3.1:83391850-83391869 | MS.gene32720:intron | 35.0% | |
| ATATAACAGTGACAATGTCG+GGG | - | chr3.1:83391248-83391267 | MS.gene32720:intron | 35.0% | |
| CATCATCTTCACTAGTAAAG+GGG | + | chr3.1:83391474-83391493 | None:intergenic | 35.0% | |
| CCATTCTTGTACAAGAAATG+GGG | + | chr3.1:83392252-83392271 | None:intergenic | 35.0% | |
| GGATGTTTGATGTGTTTGTT+TGG | - | chr3.1:83392115-83392134 | MS.gene32720:intron | 35.0% | |
| GTAGTTTGACTGTAATTTGG+TGG | - | chr3.1:83392077-83392096 | MS.gene32720:intron | 35.0% | |
| GTCATCATCTTCACTAGTAA+AGG | + | chr3.1:83391476-83391495 | None:intergenic | 35.0% | |
| GTGCAGGATTTGATTGATAA+AGG | - | chr3.1:83391388-83391407 | MS.gene32720:CDS | 35.0% | |
| GTGGGTTCTTTATGTAGAAT+TGG | - | chr3.1:83391212-83391231 | MS.gene32720:CDS | 35.0% | |
| TAGAAATTTAGTGCAGCGTA+TGG | - | chr3.1:83391432-83391451 | MS.gene32720:CDS | 35.0% | |
| TAGTTAGTCATAAGGTCTGT+AGG | - | chr3.1:83391718-83391737 | MS.gene32720:CDS | 35.0% | |
| TCAATTCCTTCAATGAAGAG+AGG | - | chr3.1:83391753-83391772 | MS.gene32720:CDS | 35.0% | |
| TGATATACAAGGGAAAAGGA+TGG | + | chr3.1:83392008-83392027 | None:intergenic | 35.0% | |
| TTCCTCAAAGAGAAACTCTT+AGG | - | chr3.1:83392294-83392313 | MS.gene32720:intron | 35.0% | |
| ! | ATAGAGCTTTTGCTTGCATA+AGG | - | chr3.1:83392149-83392168 | MS.gene32720:intron | 35.0% |
| ! | ATTTAAGACATGGGCTAAGT+GGG | - | chr3.1:83392570-83392589 | MS.gene32720:CDS | 35.0% |
| ! | TCATTTTCAACACAGGATAC+TGG | - | chr3.1:83392366-83392385 | MS.gene32720:intron | 35.0% |
| ! | TGTACCAGTGTTGTTAATCA+CGG | + | chr3.1:83391918-83391937 | None:intergenic | 35.0% |
| AGCCTAAGAGTTTCTCTTTG+AGG | + | chr3.1:83392299-83392318 | None:intergenic | 40.0% | |
| AGTAGAAACTACTTCCAGCA+AGG | - | chr3.1:83392499-83392518 | MS.gene32720:CDS | 40.0% | |
| CATAGACATGATTACCTTGC+TGG | + | chr3.1:83392516-83392535 | None:intergenic | 40.0% | |
| CCCCATTTCTTGTACAAGAA+TGG | - | chr3.1:83392249-83392268 | MS.gene32720:intron | 40.0% | |
| CGCATTCACTAACTTCAAAC+AGG | - | chr3.1:83391495-83391514 | MS.gene32720:intron | 40.0% | |
| CTATGGCTGAAATTTGCAGA+GGG | - | chr3.1:83392737-83392756 | MS.gene32720:intron | 40.0% | |
| GCAGCATATCCATTGACAAT+GGG | - | chr3.1:83392826-83392845 | MS.gene32720:intron | 40.0% | |
| GTCTTAGTGATGTCCTTGTA+TGG | - | chr3.1:83391976-83391995 | MS.gene32720:intron | 40.0% | |
| TATGGCTGAAATTTGCAGAG+GGG | - | chr3.1:83392738-83392757 | MS.gene32720:intron | 40.0% | |
| TCGACAATTCCCATTGTCAA+TGG | + | chr3.1:83392838-83392857 | None:intergenic | 40.0% | |
| TCTATGGCTGAAATTTGCAG+AGG | - | chr3.1:83392736-83392755 | MS.gene32720:intron | 40.0% | |
| TGAAATGCCACCCACAAAAA+AGG | + | chr3.1:83391603-83391622 | None:intergenic | 40.0% | |
| TGCAGCATATCCATTGACAA+TGG | - | chr3.1:83392825-83392844 | MS.gene32720:intron | 40.0% | |
| TGGGGATTTCACAATGTCTA+TGG | + | chr3.1:83392234-83392253 | None:intergenic | 40.0% | |
| ! | AACTCTGGAGGTAAATGTGA+TGG | - | chr3.1:83392769-83392788 | MS.gene32720:intron | 40.0% |
| ! | ACTCTGGAGGTAAATGTGAT+GGG | - | chr3.1:83392770-83392789 | MS.gene32720:intron | 40.0% |
| ! | CATTTAAGACATGGGCTAAG+TGG | - | chr3.1:83392569-83392588 | MS.gene32720:CDS | 40.0% |
| ! | GTTTGCTTGTTGAATTGTGC+AGG | - | chr3.1:83391372-83391391 | MS.gene32720:intron | 40.0% |
| ! | TTTTCAACACAGGATACTGG+TGG | - | chr3.1:83392369-83392388 | MS.gene32720:intron | 40.0% |
| !!! | TGATTTGCCTTTTTTGTGGG+TGG | - | chr3.1:83391593-83391612 | MS.gene32720:CDS | 40.0% |
| AATGTCGGGGACTAATTTGG+TGG | - | chr3.1:83391261-83391280 | MS.gene32720:intron | 45.0% | |
| AGGACATCACTAAGACAGCA+TGG | + | chr3.1:83391972-83391991 | None:intergenic | 45.0% | |
| AGGATGGAAGACACCATACA+AGG | + | chr3.1:83391992-83392011 | None:intergenic | 45.0% | |
| ATGGCTGAAATTTGCAGAGG+GGG | - | chr3.1:83392739-83392758 | MS.gene32720:intron | 45.0% | |
| CACTCTCCTCTCTTCATTGA+AGG | + | chr3.1:83391762-83391781 | None:intergenic | 45.0% | |
| CAGCGTATGGAATCATCTGT+GGG | - | chr3.1:83391445-83391464 | MS.gene32720:CDS | 45.0% | |
| CCATCCGTGATTAACAACAC+TGG | - | chr3.1:83391911-83391930 | MS.gene32720:intron | 45.0% | |
| CTTCAATGAAGAGAGGAGAG+TGG | - | chr3.1:83391760-83391779 | MS.gene32720:CDS | 45.0% | |
| GACAATGTCGGGGACTAATT+TGG | - | chr3.1:83391258-83391277 | MS.gene32720:intron | 45.0% | |
| GATAGCAAGCACACGTACAA+GGG | - | chr3.1:83392607-83392626 | MS.gene32720:intron | 45.0% | |
| TGATAGCAAGCACACGTACA+AGG | - | chr3.1:83392606-83392625 | MS.gene32720:intron | 45.0% | |
| ! | CCAGTGTTGTTAATCACGGA+TGG | + | chr3.1:83391914-83391933 | None:intergenic | 45.0% |
| ! | CTCTGGAGGTAAATGTGATG+GGG | - | chr3.1:83392771-83392790 | MS.gene32720:intron | 45.0% |
| ! | TGACTGTAATTTGGTGGGAC+AGG | - | chr3.1:83392083-83392102 | MS.gene32720:intron | 45.0% |
| !! | AAGGTCTGTAGGAGTGCTTA+GGG | - | chr3.1:83391729-83391748 | MS.gene32720:CDS | 45.0% |
| !! | CGTACAAGGGTCTTTTTCAC+TGG | - | chr3.1:83392620-83392639 | MS.gene32720:intron | 45.0% |
| !! | TAAGGTCTGTAGGAGTGCTT+AGG | - | chr3.1:83391728-83391747 | MS.gene32720:CDS | 45.0% |
| AGAGGAGAGTGGAGTTCAGA+TGG | - | chr3.1:83391771-83391790 | MS.gene32720:intron | 50.0% | |
| GCAGCGTATGGAATCATCTG+TGG | - | chr3.1:83391444-83391463 | MS.gene32720:CDS | 50.0% | |
| TGAGCTTCTTGCTGCTAAGC+AGG | - | chr3.1:83391150-83391169 | MS.gene32720:CDS | 50.0% | |
| TGGCTGAAATTTGCAGAGGG+GGG | - | chr3.1:83392740-83392759 | MS.gene32720:intron | 50.0% | |
| TGGTGGGACAGGTTTGTGTT+AGG | - | chr3.1:83392094-83392113 | MS.gene32720:intron | 50.0% | |
| !! | ATATCGGCTCTGCAGTGTTG+TGG | - | chr3.1:83391818-83391837 | MS.gene32720:intron | 50.0% |
| !! | CGTGTGCTTGCTATCAACTG+TGG | + | chr3.1:83392602-83392621 | None:intergenic | 50.0% |
| AAATTTGCAGAGGGGGGCAG+GGG | - | chr3.1:83392746-83392765 | MS.gene32720:intron | 55.0% | |
| GAAATTTGCAGAGGGGGGCA+GGG | - | chr3.1:83392745-83392764 | MS.gene32720:intron | 55.0% | |
| GCTTCTTGCTGCTAAGCAGG+TGG | - | chr3.1:83391153-83391172 | MS.gene32720:CDS | 55.0% | |
| TGAAATTTGCAGAGGGGGGC+AGG | - | chr3.1:83392744-83392763 | MS.gene32720:intron | 55.0% | |
| AGAGGGGGGCAGGGGAACTC+TGG | - | chr3.1:83392754-83392773 | MS.gene32720:intron | 70.0% | |
| GGGGGGCAGGGGAACTCTGG+AGG | - | chr3.1:83392757-83392776 | MS.gene32720:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 83391127 | 83392876 | 83391127 | ID=MS.gene32720 |
| chr3.1 | mRNA | 83391127 | 83392876 | 83391127 | ID=MS.gene32720.t1;Parent=MS.gene32720 |
| chr3.1 | exon | 83392829 | 83392876 | 83392829 | ID=MS.gene32720.t1.exon1;Parent=MS.gene32720.t1 |
| chr3.1 | CDS | 83392829 | 83392876 | 83392829 | ID=cds.MS.gene32720.t1;Parent=MS.gene32720.t1 |
| chr3.1 | exon | 83392487 | 83392609 | 83392487 | ID=MS.gene32720.t1.exon2;Parent=MS.gene32720.t1 |
| chr3.1 | CDS | 83392487 | 83392609 | 83392487 | ID=cds.MS.gene32720.t1;Parent=MS.gene32720.t1 |
| chr3.1 | exon | 83391589 | 83391785 | 83391589 | ID=MS.gene32720.t1.exon3;Parent=MS.gene32720.t1 |
| chr3.1 | CDS | 83391589 | 83391785 | 83391589 | ID=cds.MS.gene32720.t1;Parent=MS.gene32720.t1 |
| chr3.1 | exon | 83391383 | 83391502 | 83391383 | ID=MS.gene32720.t1.exon4;Parent=MS.gene32720.t1 |
| chr3.1 | CDS | 83391383 | 83391502 | 83391383 | ID=cds.MS.gene32720.t1;Parent=MS.gene32720.t1 |
| chr3.1 | exon | 83391127 | 83391247 | 83391127 | ID=MS.gene32720.t1.exon5;Parent=MS.gene32720.t1 |
| chr3.1 | CDS | 83391127 | 83391247 | 83391127 | ID=cds.MS.gene32720.t1;Parent=MS.gene32720.t1 |
| Gene Sequence |
| Protein sequence |
