Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32768.t1 | XP_024635031.1 | 86.1 | 360 | 28 | 3 | 1 | 357 | 1 | 341 | 8.30E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32768.t1 | Q9S7X6 | 67.0 | 355 | 98 | 1 | 1 | 355 | 1 | 336 | 1.1e-136 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32768.t1 | G7J8E3 | 83.8 | 358 | 29 | 3 | 1 | 357 | 1 | 330 | 4.2e-172 | 613.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65617 | MS.gene32768 | PPI |
| MS.gene32768 | MS.gene038590 | PPI |
| MS.gene013613 | MS.gene32768 | PPI |
| MS.gene32768 | MS.gene027622 | PPI |
| MS.gene038589 | MS.gene32768 | PPI |
| MS.gene45048 | MS.gene32768 | PPI |
| MS.gene32768 | MS.gene80283 | PPI |
| MS.gene32768 | MS.gene06954 | PPI |
| MS.gene009124 | MS.gene32768 | PPI |
| MS.gene32768 | MS.gene06736 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32768.t1 | MTR_3g104960 | 83.799 | 358 | 29 | 3 | 1 | 357 | 1 | 330 | 0.0 | 607 |
| MS.gene32768.t1 | MTR_1g015300 | 71.186 | 354 | 82 | 2 | 1 | 354 | 1 | 334 | 0.0 | 530 |
| MS.gene32768.t1 | MTR_5g006140 | 57.955 | 352 | 121 | 5 | 1 | 352 | 1 | 325 | 4.23e-145 | 413 |
| MS.gene32768.t1 | MTR_5g006140 | 64.015 | 264 | 87 | 4 | 1 | 264 | 1 | 256 | 1.46e-123 | 356 |
| MS.gene32768.t1 | MTR_5g034470 | 33.195 | 241 | 145 | 8 | 27 | 259 | 46 | 278 | 7.17e-36 | 134 |
| MS.gene32768.t1 | MTR_5g034470 | 33.195 | 241 | 145 | 8 | 27 | 259 | 46 | 278 | 9.13e-36 | 133 |
| MS.gene32768.t1 | MTR_8g063940 | 31.474 | 251 | 155 | 9 | 17 | 259 | 36 | 277 | 9.45e-35 | 130 |
| MS.gene32768.t1 | MTR_3g091090 | 33.498 | 203 | 128 | 5 | 59 | 259 | 95 | 292 | 2.75e-23 | 99.8 |
| MS.gene32768.t1 | MTR_3g078190 | 34.266 | 143 | 93 | 1 | 50 | 191 | 61 | 203 | 1.91e-22 | 96.7 |
| MS.gene32768.t1 | MTR_1g028360 | 32.243 | 214 | 139 | 4 | 47 | 259 | 88 | 296 | 9.41e-21 | 92.8 |
| MS.gene32768.t1 | MTR_3g032400 | 72.727 | 44 | 9 | 1 | 299 | 339 | 1 | 44 | 1.71e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32768.t1 | AT5G19530 | 67.042 | 355 | 98 | 1 | 1 | 355 | 1 | 336 | 4.91e-174 | 487 |
| MS.gene32768.t1 | AT5G19530 | 67.241 | 348 | 95 | 1 | 8 | 355 | 1 | 329 | 9.15e-171 | 479 |
| MS.gene32768.t1 | AT1G23820 | 34.545 | 220 | 137 | 5 | 47 | 264 | 105 | 319 | 1.21e-39 | 143 |
| MS.gene32768.t1 | AT1G23820 | 34.419 | 215 | 134 | 5 | 47 | 259 | 61 | 270 | 1.10e-37 | 138 |
| MS.gene32768.t1 | AT1G70310 | 33.023 | 215 | 137 | 5 | 47 | 259 | 65 | 274 | 9.67e-36 | 133 |
| MS.gene32768.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 101 | 309 | 2.77e-25 | 105 |
| MS.gene32768.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene32768.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene32768.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene32768.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene32768.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene32768.t1 | AT5G53120 | 30.290 | 241 | 135 | 6 | 47 | 259 | 84 | 319 | 1.94e-21 | 94.7 |
Find 75 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATCAAAGAAAGAATAAA+TGG | 0.206936 | 3.1:-82889181 | MS.gene32768:CDS |
| CCAAAGCTACTATACGTTAA+TGG | 0.212128 | 3.1:-82892181 | MS.gene32768:CDS |
| TTACCAAGAGATAGCTCTTT+TGG | 0.239230 | 3.1:-82891785 | MS.gene32768:CDS |
| TCCCATTATAAACACTCTTT+TGG | 0.248667 | 3.1:+82890461 | None:intergenic |
| TGTCATTGAGCTTGAGCTTC+AGG | 0.258696 | 3.1:+82889738 | None:intergenic |
| AATATCATGGTCGTAATTAT+TGG | 0.268835 | 3.1:+82892117 | None:intergenic |
| TTCAATAGTGTGCTTCATAA+AGG | 0.289257 | 3.1:-82891817 | MS.gene32768:intron |
| CTCTATTGACTTGTGCTTGA+AGG | 0.314655 | 3.1:+82890410 | None:intergenic |
| GAGAGATTTGATATCATTGT+TGG | 0.321427 | 3.1:-82889830 | MS.gene32768:CDS |
| GTAGAGACGAATTAGATAAA+AGG | 0.323825 | 3.1:-82889856 | MS.gene32768:intron |
| TTTGCTGATACTTGGGGATT+GGG | 0.332837 | 3.1:-82889365 | MS.gene32768:CDS |
| TCCACAGAACCAATGAATAA+TGG | 0.340218 | 3.1:+82889214 | None:intergenic |
| GATACTTGGGGATTGGGTTA+TGG | 0.340417 | 3.1:-82889359 | MS.gene32768:CDS |
| GTTAATGGGTTCCCAAAGTA+TGG | 0.350858 | 3.1:-82892166 | MS.gene32768:CDS |
| ATTCATTGGTTCTGTGGAAA+TGG | 0.352637 | 3.1:-82889209 | MS.gene32768:CDS |
| TTTCATCATGGCCATACTTT+GGG | 0.365810 | 3.1:+82892155 | None:intergenic |
| CAAAGCTACTATACGTTAAT+GGG | 0.372653 | 3.1:-82892180 | MS.gene32768:CDS |
| ATTTCATCATGGCCATACTT+TGG | 0.375662 | 3.1:+82892154 | None:intergenic |
| CCCCAAAAGAGTGTTTATAA+TGG | 0.380397 | 3.1:-82890463 | MS.gene32768:CDS |
| CCATTAACGTATAGTAGCTT+TGG | 0.397053 | 3.1:+82892181 | None:intergenic |
| TCAATAGTGTGCTTCATAAA+GGG | 0.397422 | 3.1:-82891816 | MS.gene32768:intron |
| TAACAAGGTCCACCTTCAAC+TGG | 0.402775 | 3.1:+82889794 | None:intergenic |
| GGGGAATTGCTCTATCTAAC+TGG | 0.412248 | 3.1:-82889160 | MS.gene32768:CDS |
| GAAAATGCTAGATTTGTTCC+TGG | 0.419701 | 3.1:-82888943 | MS.gene32768:CDS |
| CCCAAAAGAGTGTTTATAAT+GGG | 0.422343 | 3.1:-82890462 | MS.gene32768:CDS |
| TCAGACCAACCATTATTCAT+TGG | 0.425084 | 3.1:-82889223 | MS.gene32768:CDS |
| CATTAGGCCCTAGTGATTGA+TGG | 0.427552 | 3.1:-82891655 | MS.gene32768:intron |
| GAATCAAAGAAAGAATAAAT+GGG | 0.447920 | 3.1:-82889180 | MS.gene32768:CDS |
| TGATATCATTGTTGGAGACT+TGG | 0.456426 | 3.1:-82889822 | MS.gene32768:CDS |
| CTTGTACAGGCTGGACCGGC+AGG | 0.458626 | 3.1:-82889578 | MS.gene32768:intron |
| GAGGTGAAGGGTCTGCTGCT+AGG | 0.467316 | 3.1:-82890437 | MS.gene32768:CDS |
| TTTATAATGGGAGGAGGTGA+AGG | 0.485534 | 3.1:-82890450 | MS.gene32768:CDS |
| ATTACGACCATGATATTCCT+TGG | 0.489108 | 3.1:-82892111 | MS.gene32768:CDS |
| TTTGATTGTGTTATATATAG+AGG | 0.490558 | 3.1:+82889529 | None:intergenic |
| AGGTGAAGGGTCTGCTGCTA+GGG | 0.492492 | 3.1:-82890436 | MS.gene32768:CDS |
| TATCCAAAAGAGCTATCTCT+TGG | 0.494803 | 3.1:+82891782 | None:intergenic |
| ACCATTATTCATTGGTTCTG+TGG | 0.500865 | 3.1:-82889215 | MS.gene32768:CDS |
| TCGTGAAAGAGTCTTGTTCA+TGG | 0.504717 | 3.1:+82889114 | None:intergenic |
| GCATCTTCCCATCAATCACT+AGG | 0.507422 | 3.1:+82891647 | None:intergenic |
| CATGGTCGTAATTATTGGTA+AGG | 0.509110 | 3.1:+82892122 | None:intergenic |
| TTATCGATGATGATCTCAAA+TGG | 0.509418 | 3.1:-82892078 | MS.gene32768:CDS |
| ATATCTTGTACAGGCTGGAC+CGG | 0.514869 | 3.1:-82889582 | MS.gene32768:intron |
| TGCTCTATCTAACTGGTGAC+TGG | 0.529803 | 3.1:-82889153 | MS.gene32768:CDS |
| GCTAGATTTGTTCCTGGACA+CGG | 0.542235 | 3.1:-82888937 | MS.gene32768:CDS |
| GACTTGGCAGACCCAGTTGA+AGG | 0.548063 | 3.1:-82889806 | MS.gene32768:CDS |
| CCCCAAGTATCAGCAAAAGA+TGG | 0.550572 | 3.1:+82889371 | None:intergenic |
| ATTAGGCCCTAGTGATTGAT+GGG | 0.554095 | 3.1:-82891654 | MS.gene32768:intron |
| TTGTGCGTCAAGAAACCTGC+CGG | 0.556424 | 3.1:+82889563 | None:intergenic |
| CCTCGTACCAAGGAATATCA+TGG | 0.562900 | 3.1:+82892104 | None:intergenic |
| CATCATGTGTGATATAGACC+AGG | 0.569141 | 3.1:-82890382 | MS.gene32768:intron |
| ATCGAGCTTCTTGTGAGCAA+AGG | 0.571818 | 3.1:+82890187 | None:intergenic |
| GGTGATGATCTATTTCATCA+TGG | 0.576842 | 3.1:+82892143 | None:intergenic |
| TCGATAACTTCCTCGTACCA+AGG | 0.582508 | 3.1:+82892094 | None:intergenic |
| TGATAAGTAACACCGTGTCC+AGG | 0.583466 | 3.1:+82888925 | None:intergenic |
| CAGAACCAATGAATAATGGT+TGG | 0.584345 | 3.1:+82889218 | None:intergenic |
| TTTGTATAAAGTTGATAACA+AGG | 0.588774 | 3.1:+82889779 | None:intergenic |
| AGAGTGTTTATAATGGGAGG+AGG | 0.595020 | 3.1:-82890456 | MS.gene32768:CDS |
| AACAAGGTCCACCTTCAACT+GGG | 0.595497 | 3.1:+82889795 | None:intergenic |
| GGCAGGTTTCTTGACGCACA+AGG | 0.600278 | 3.1:-82889561 | MS.gene32768:CDS |
| CATCTTCCCATCAATCACTA+GGG | 0.602249 | 3.1:+82891648 | None:intergenic |
| AAGCTCAAGCTCAATGACAA+TGG | 0.611444 | 3.1:-82889734 | MS.gene32768:CDS |
| AAAAGAGTGTTTATAATGGG+AGG | 0.619147 | 3.1:-82890459 | MS.gene32768:CDS |
| AATCAAAGAAAGAATAAATG+GGG | 0.636793 | 3.1:-82889179 | MS.gene32768:CDS |
| TTATAATGGGAGGAGGTGAA+GGG | 0.639411 | 3.1:-82890449 | MS.gene32768:CDS |
| TTGGCAGACCCAGTTGAAGG+TGG | 0.643350 | 3.1:-82889803 | MS.gene32768:CDS |
| TGTTCATGGTGGTAGATGAG+TGG | 0.657255 | 3.1:+82889128 | None:intergenic |
| CCATGATATTCCTTGGTACG+AGG | 0.658757 | 3.1:-82892104 | MS.gene32768:CDS |
| ACTTGGGGTGACATAAGAGA+GGG | 0.659891 | 3.1:+82891575 | None:intergenic |
| AAAATACTTGATTACAAACA+GGG | 0.671188 | 3.1:-82890213 | MS.gene32768:CDS |
| TACTTGGGGTGACATAAGAG+AGG | 0.688204 | 3.1:+82891574 | None:intergenic |
| TTGGGGTGACATAAGAGAGG+GGG | 0.698820 | 3.1:+82891577 | None:intergenic |
| TGAAAGAGTCTTGTTCATGG+TGG | 0.711764 | 3.1:+82889117 | None:intergenic |
| AGGTTTCTTGACGCACAAGG+AGG | 0.713497 | 3.1:-82889558 | MS.gene32768:CDS |
| CTTGGGGTGACATAAGAGAG+GGG | 0.736278 | 3.1:+82891576 | None:intergenic |
| ATACTTGATTACAAACAGGG+AGG | 0.758533 | 3.1:-82890210 | MS.gene32768:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATCTTTAATAAATG+TGG | + | chr3.1:82889145-82889164 | None:intergenic | 10.0% |
| !! | AAACTAAAATAACAAGAAAA+AGG | + | chr3.1:82890988-82891007 | None:intergenic | 15.0% |
| !! | ATTTATATAGAAACTTACTT+GGG | + | chr3.1:82889555-82889574 | None:intergenic | 15.0% |
| !! | TATTTATATAGAAACTTACT+TGG | + | chr3.1:82889556-82889575 | None:intergenic | 15.0% |
| !! | TTAAATTTAATTCAAGCAAT+TGG | - | chr3.1:82891622-82891641 | MS.gene32768:CDS | 15.0% |
| !!! | ATATTGAATAATTTGATGAT+GGG | - | chr3.1:82891119-82891138 | MS.gene32768:intron | 15.0% |
| !!! | GTAAAAAAGTGTAAAAAAAA+CGG | - | chr3.1:82889754-82889773 | MS.gene32768:CDS | 15.0% |
| !!! | GTAAAAAAGTGTAAAAAAAA+CGG | + | chr3.1:82889773-82889754 | None:intergenic | 15.0% |
| !!! | TAAAAAAGTGTAAAAAAAAC+GGG | - | chr3.1:82889755-82889774 | MS.gene32768:CDS | 15.0% |
| !!! | TAAAAAAGTGTAAAAAAAAC+GGG | + | chr3.1:82889774-82889755 | None:intergenic | 15.0% |
| !! | AAAAATACTTGATTACAAAC+AGG | - | chr3.1:82890897-82890916 | MS.gene32768:intron | 20.0% |
| !! | AAAATACTTGATTACAAACA+GGG | - | chr3.1:82890898-82890917 | MS.gene32768:intron | 20.0% |
| !! | AAATAACAAGAAAAAGGAAA+AGG | + | chr3.1:82890982-82891001 | None:intergenic | 20.0% |
| !! | AACATTATTGAGTAAACTAA+TGG | - | chr3.1:82891192-82891211 | MS.gene32768:intron | 20.0% |
| !! | AATCAAAGAAAGAATAAATG+GGG | - | chr3.1:82891932-82891951 | MS.gene32768:intron | 20.0% |
| !! | AATTTCATAAAACCTATAGT+TGG | + | chr3.1:82891438-82891457 | None:intergenic | 20.0% |
| !! | ACTATTATTTATGTTGCATT+AGG | - | chr3.1:82889440-82889459 | MS.gene32768:intron | 20.0% |
| !! | AGAATCAAAGAAAGAATAAA+TGG | - | chr3.1:82891930-82891949 | MS.gene32768:intron | 20.0% |
| !! | ATATGGATGAAGATTAATAA+TGG | + | chr3.1:82890767-82890786 | None:intergenic | 20.0% |
| !! | ATCATAATCATTGATGAATA+TGG | + | chr3.1:82890784-82890803 | None:intergenic | 20.0% |
| !! | ATTTCATAAAACCTATAGTT+GGG | + | chr3.1:82891437-82891456 | None:intergenic | 20.0% |
| !! | GAATCAAAGAAAGAATAAAT+GGG | - | chr3.1:82891931-82891950 | MS.gene32768:intron | 20.0% |
| !! | GATATTGAATAATTTGATGA+TGG | - | chr3.1:82891118-82891137 | MS.gene32768:intron | 20.0% |
| !! | TATGGATGAAGATTAATAAT+GGG | + | chr3.1:82890766-82890785 | None:intergenic | 20.0% |
| !! | TTATGTTTGCTTAAATTCTT+AGG | - | chr3.1:82891006-82891025 | MS.gene32768:intron | 20.0% |
| !! | TTTATATAGAAACTTACTTG+GGG | + | chr3.1:82889554-82889573 | None:intergenic | 20.0% |
| !! | TTTGATTGTGTTATATATAG+AGG | + | chr3.1:82891585-82891604 | None:intergenic | 20.0% |
| !!! | TTATATTATGCTTTAAATCC+AGG | - | chr3.1:82891863-82891882 | MS.gene32768:intron | 20.0% |
| !!! | TTTAATTTAATATAACGTGC+TGG | - | chr3.1:82889594-82889613 | MS.gene32768:intron | 20.0% |
| !!! | TTTGTATAAAGTTGATAACA+AGG | + | chr3.1:82891335-82891354 | None:intergenic | 20.0% |
| ! | AAACAAAATGAAGAAGATGA+TGG | - | chr3.1:82890362-82890381 | MS.gene32768:intron | 25.0% |
| ! | AAGAAGATAAAGAAGATATG+AGG | + | chr3.1:82889970-82889989 | None:intergenic | 25.0% |
| ! | AATATCATGGTCGTAATTAT+TGG | + | chr3.1:82888997-82889016 | None:intergenic | 25.0% |
| ! | AATGTTTAATAAGCAGAACA+CGG | + | chr3.1:82891178-82891197 | None:intergenic | 25.0% |
| ! | AGAAGATAAAGAAGATATGA+GGG | + | chr3.1:82889969-82889988 | None:intergenic | 25.0% |
| ! | ATCAATAGTGTATTTAGCAA+TGG | + | chr3.1:82890053-82890072 | None:intergenic | 25.0% |
| ! | ATGTTAATGAAGAAGATATG+AGG | - | chr3.1:82890315-82890334 | MS.gene32768:intron | 25.0% |
| ! | TCTTTAATAAATGTGGTACT+TGG | + | chr3.1:82889138-82889157 | None:intergenic | 25.0% |
| ! | TGTTAATGAAGAAGATATGA+GGG | - | chr3.1:82890316-82890335 | MS.gene32768:intron | 25.0% |
| ! | TTGCTATAGTACTTCTATTA+TGG | - | chr3.1:82889378-82889397 | MS.gene32768:CDS | 25.0% |
| !! | AGACTATCATTTTCACAATT+CGG | - | chr3.1:82889220-82889239 | MS.gene32768:CDS | 25.0% |
| !!! | ATGAAGATTAATAATGGGTT+TGG | + | chr3.1:82890761-82890780 | None:intergenic | 25.0% |
| !!! | CAATATTTCTTTTTCGCAAT+TGG | - | chr3.1:82892029-82892048 | MS.gene32768:intron | 25.0% |
| !!! | GATTAGGCATTTTAAAGTAT+TGG | - | chr3.1:82889616-82889635 | MS.gene32768:intron | 25.0% |
| AAAAACAATGTCCCAACTAT+AGG | - | chr3.1:82891423-82891442 | MS.gene32768:intron | 30.0% | |
| AAACAAGATGAAGAAGATGA+TGG | + | chr3.1:82889923-82889942 | None:intergenic | 30.0% | |
| AAACTAATTTCTCAAAGTGG+TGG | - | chr3.1:82890115-82890134 | MS.gene32768:intron | 30.0% | |
| AACTCAAACAAGACTCATAA+TGG | + | chr3.1:82890159-82890178 | None:intergenic | 30.0% | |
| AACTGAATGATATCTTGTAC+AGG | - | chr3.1:82891520-82891539 | MS.gene32768:intron | 30.0% | |
| AAGCACACTATTGAAAAAGA+TGG | + | chr3.1:82889289-82889308 | None:intergenic | 30.0% | |
| ACAACACAATTAATCTGCTA+AGG | - | chr3.1:82890092-82890111 | MS.gene32768:intron | 30.0% | |
| ACCAAAGACATATTTGTTTC+AGG | - | chr3.1:82892115-82892134 | MS.gene32768:CDS | 30.0% | |
| ACTCAAACAAGACTCATAAT+GGG | + | chr3.1:82890158-82890177 | None:intergenic | 30.0% | |
| AGGAAACTAATTTCTCAAAG+TGG | - | chr3.1:82890112-82890131 | MS.gene32768:intron | 30.0% | |
| ATTAACTATGAACAAACAGG+AGG | - | chr3.1:82890859-82890878 | MS.gene32768:intron | 30.0% | |
| CAAAGCTACTATACGTTAAT+GGG | - | chr3.1:82888931-82888950 | MS.gene32768:CDS | 30.0% | |
| CAAGCAATTGGATTTAACAA+TGG | - | chr3.1:82891634-82891653 | MS.gene32768:CDS | 30.0% | |
| CGAATTAACTATGAACAAAC+AGG | - | chr3.1:82890856-82890875 | MS.gene32768:intron | 30.0% | |
| GAGAGATTTGATATCATTGT+TGG | - | chr3.1:82891281-82891300 | MS.gene32768:intron | 30.0% | |
| GCGCAACAATATTTAAAGAA+TGG | - | chr3.1:82890223-82890242 | MS.gene32768:CDS | 30.0% | |
| GTAGAGACGAATTAGATAAA+AGG | - | chr3.1:82891255-82891274 | MS.gene32768:intron | 30.0% | |
| TCAATAGTGTGCTTCATAAA+GGG | - | chr3.1:82889295-82889314 | MS.gene32768:intron | 30.0% | |
| TGAAAATGATAGTCTACTAC+TGG | + | chr3.1:82889215-82889234 | None:intergenic | 30.0% | |
| TGCTAAATACACTATTGATG+TGG | - | chr3.1:82890054-82890073 | MS.gene32768:intron | 30.0% | |
| TGTACAAGATATCATTCAGT+TGG | + | chr3.1:82891521-82891540 | None:intergenic | 30.0% | |
| TTAATATAACGTGCTGGATT+AGG | - | chr3.1:82889600-82889619 | MS.gene32768:intron | 30.0% | |
| TTATCGATGATGATCTCAAA+TGG | - | chr3.1:82889033-82889052 | MS.gene32768:intron | 30.0% | |
| TTCAATAGTGTGCTTCATAA+AGG | - | chr3.1:82889294-82889313 | MS.gene32768:intron | 30.0% | |
| ! | CCATTATAAACACTCTTTTG+GGG | + | chr3.1:82890651-82890670 | None:intergenic | 30.0% |
| ! | CCCATTATAAACACTCTTTT+GGG | + | chr3.1:82890652-82890671 | None:intergenic | 30.0% |
| ! | TCCCATTATAAACACTCTTT+TGG | + | chr3.1:82890653-82890672 | None:intergenic | 30.0% |
| !! | AAAAGAGTGTTTATAATGGG+AGG | - | chr3.1:82890652-82890671 | MS.gene32768:intron | 30.0% |
| !! | AGTCTTGTTTGAGTTTGTTT+GGG | - | chr3.1:82890164-82890183 | MS.gene32768:intron | 30.0% |
| !! | CCCAAAAGAGTGTTTATAAT+GGG | - | chr3.1:82890649-82890668 | MS.gene32768:intron | 30.0% |
| ACTCTTCTCAAATCAAAGCA+TGG | - | chr3.1:82890013-82890032 | MS.gene32768:intron | 35.0% | |
| ATACTTGATTACAAACAGGG+AGG | - | chr3.1:82890901-82890920 | MS.gene32768:intron | 35.0% | |
| ATTACGACCATGATATTCCT+TGG | - | chr3.1:82889000-82889019 | MS.gene32768:intron | 35.0% | |
| ATTTCATCATGGCCATACTT+TGG | + | chr3.1:82888960-82888979 | None:intergenic | 35.0% | |
| CAGAACCAATGAATAATGGT+TGG | + | chr3.1:82891896-82891915 | None:intergenic | 35.0% | |
| CATGGTCGTAATTATTGGTA+AGG | + | chr3.1:82888992-82889011 | None:intergenic | 35.0% | |
| CCAAAGCTACTATACGTTAA+TGG | - | chr3.1:82888930-82888949 | MS.gene32768:CDS | 35.0% | |
| CCATTAACGTATAGTAGCTT+TGG | + | chr3.1:82888933-82888952 | None:intergenic | 35.0% | |
| GAAAAGGAATGATGCATACT+TGG | + | chr3.1:82890966-82890985 | None:intergenic | 35.0% | |
| GCCTGAAACAAATATGTCTT+TGG | + | chr3.1:82892119-82892138 | None:intergenic | 35.0% | |
| GGTGATGATCTATTTCATCA+TGG | + | chr3.1:82888971-82888990 | None:intergenic | 35.0% | |
| TATCCAAAAGAGCTATCTCT+TGG | + | chr3.1:82889332-82889351 | None:intergenic | 35.0% | |
| TCAGACCAACCATTATTCAT+TGG | - | chr3.1:82891888-82891907 | MS.gene32768:intron | 35.0% | |
| TCCACAGAACCAATGAATAA+TGG | + | chr3.1:82891900-82891919 | None:intergenic | 35.0% | |
| TGATATCATTGTTGGAGACT+TGG | - | chr3.1:82891289-82891308 | MS.gene32768:intron | 35.0% | |
| TTTCATCATGGCCATACTTT+GGG | + | chr3.1:82888959-82888978 | None:intergenic | 35.0% | |
| ! | ACATTCTCACTCAAACGTTT+TGG | - | chr3.1:82892084-82892103 | MS.gene32768:CDS | 35.0% |
| ! | ACCATCTTTTGCTGATACTT+GGG | - | chr3.1:82891739-82891758 | MS.gene32768:intron | 35.0% |
| ! | ATGAAGTTTGCTTAGTGCAA+TGG | + | chr3.1:82891054-82891073 | None:intergenic | 35.0% |
| ! | GAAAATGCTAGATTTGTTCC+TGG | - | chr3.1:82892168-82892187 | MS.gene32768:CDS | 35.0% |
| ! | TACCATCTTTTGCTGATACT+TGG | - | chr3.1:82891738-82891757 | MS.gene32768:intron | 35.0% |
| ! | TTACCAAGAGATAGCTCTTT+TGG | - | chr3.1:82889326-82889345 | MS.gene32768:CDS | 35.0% |
| !! | AATGGTCTTTTGCTTTGAAC+AGG | - | chr3.1:82889051-82889070 | MS.gene32768:intron | 35.0% |
| !! | ACCATTATTCATTGGTTCTG+TGG | - | chr3.1:82891896-82891915 | MS.gene32768:intron | 35.0% |
| !! | ATTCATTGGTTCTGTGGAAA+TGG | - | chr3.1:82891902-82891921 | MS.gene32768:intron | 35.0% |
| !! | CCCCAAAAGAGTGTTTATAA+TGG | - | chr3.1:82890648-82890667 | MS.gene32768:intron | 35.0% |
| !! | CTTTTGGATACAAAGCGTTT+TGG | - | chr3.1:82889342-82889361 | MS.gene32768:CDS | 35.0% |
| !! | GAGTCTTGTTTGAGTTTGTT+TGG | - | chr3.1:82890163-82890182 | MS.gene32768:intron | 35.0% |
| !! | TAATGGGTTTGGTAATAACC+TGG | + | chr3.1:82890750-82890769 | None:intergenic | 35.0% |
| AACTATGAACAAACAGGAGG+TGG | - | chr3.1:82890862-82890881 | MS.gene32768:intron | 40.0% | |
| AAGCTCAAGCTCAATGACAA+TGG | - | chr3.1:82891377-82891396 | MS.gene32768:intron | 40.0% | |
| AGGTACCATGAAGTTTCGTT+GGG | - | chr3.1:82891026-82891045 | MS.gene32768:intron | 40.0% | |
| ATTAGGCCCTAGTGATTGAT+GGG | - | chr3.1:82889457-82889476 | MS.gene32768:intron | 40.0% | |
| CATCATGTGTGATATAGACC+AGG | - | chr3.1:82890729-82890748 | MS.gene32768:intron | 40.0% | |
| CATCTTCCCATCAATCACTA+GGG | + | chr3.1:82889466-82889485 | None:intergenic | 40.0% | |
| GAATGATATCTTGTACAGGC+TGG | - | chr3.1:82891524-82891543 | MS.gene32768:intron | 40.0% | |
| GTAGTACGTTTGATTGAGTG+TGG | + | chr3.1:82891156-82891175 | None:intergenic | 40.0% | |
| GTCTACTACTGGTGTACATA+AGG | + | chr3.1:82889204-82889223 | None:intergenic | 40.0% | |
| TACGTTTGATTGAGTGTGGT+TGG | + | chr3.1:82891152-82891171 | None:intergenic | 40.0% | |
| TAGGTACCATGAAGTTTCGT+TGG | - | chr3.1:82891025-82891044 | MS.gene32768:intron | 40.0% | |
| TGGTGCTCTTAGATATCTTG+AGG | - | chr3.1:82890198-82890217 | MS.gene32768:CDS | 40.0% | |
| TTTGCGTGAGTTAACTCACA+CGG | + | chr3.1:82889815-82889834 | None:intergenic | 40.0% | |
| TTTGCTGATACTTGGGGATT+GGG | - | chr3.1:82891746-82891765 | MS.gene32768:intron | 40.0% | |
| ! | AGAGTGTTTATAATGGGAGG+AGG | - | chr3.1:82890655-82890674 | MS.gene32768:intron | 40.0% |
| ! | CAATGGCATTTTTGTGACTC+AGG | - | chr3.1:82891394-82891413 | MS.gene32768:intron | 40.0% |
| ! | CCATCTTTTGCTGATACTTG+GGG | - | chr3.1:82891740-82891759 | MS.gene32768:intron | 40.0% |
| ! | GTATTTTCGGAATGGTTGCA+GGG | - | chr3.1:82890572-82890591 | MS.gene32768:intron | 40.0% |
| ! | GTATTTTCGGAATGGTTGCA+GGG | + | chr3.1:82890591-82890572 | None:intergenic | 40.0% |
| ! | TTATAATGGGAGGAGGTGAA+GGG | - | chr3.1:82890662-82890681 | MS.gene32768:intron | 40.0% |
| ! | TTTATAATGGGAGGAGGTGA+AGG | - | chr3.1:82890661-82890680 | MS.gene32768:intron | 40.0% |
| ! | TTTTGCTGATACTTGGGGAT+TGG | - | chr3.1:82891745-82891764 | MS.gene32768:intron | 40.0% |
| !! | CTCTATTGACTTGTGCTTGA+AGG | + | chr3.1:82890704-82890723 | None:intergenic | 40.0% |
| !! | GTTAATGGGTTCCCAAAGTA+TGG | - | chr3.1:82888945-82888964 | MS.gene32768:CDS | 40.0% |
| !! | TCGTGAAAGAGTCTTGTTCA+TGG | + | chr3.1:82892000-82892019 | None:intergenic | 40.0% |
| !! | TGAAAGAGTCTTGTTCATGG+TGG | + | chr3.1:82891997-82892016 | None:intergenic | 40.0% |
| !! | TTGACTTGTGAGTTGTGTTG+TGG | + | chr3.1:82889098-82889117 | None:intergenic | 40.0% |
| !!! | GGATACAAAGCGTTTTGGAA+AGG | - | chr3.1:82889347-82889366 | MS.gene32768:CDS | 40.0% |
| AACAAGGTCCACCTTCAACT+GGG | + | chr3.1:82891319-82891338 | None:intergenic | 45.0% | |
| ACTTGGGGTGACATAAGAGA+GGG | + | chr3.1:82889539-82889558 | None:intergenic | 45.0% | |
| ATATCTTGTACAGGCTGGAC+CGG | - | chr3.1:82891529-82891548 | MS.gene32768:intron | 45.0% | |
| ATCGAGCTTCTTGTGAGCAA+AGG | + | chr3.1:82890927-82890946 | None:intergenic | 45.0% | |
| CATTAGGCCCTAGTGATTGA+TGG | - | chr3.1:82889456-82889475 | MS.gene32768:intron | 45.0% | |
| CCATGATATTCCTTGGTACG+AGG | - | chr3.1:82889007-82889026 | MS.gene32768:intron | 45.0% | |
| CCCCAAGTATCAGCAAAAGA+TGG | + | chr3.1:82891743-82891762 | None:intergenic | 45.0% | |
| CCTCGTACCAAGGAATATCA+TGG | + | chr3.1:82889010-82889029 | None:intergenic | 45.0% | |
| GATACTTGGGGATTGGGTTA+TGG | - | chr3.1:82891752-82891771 | MS.gene32768:intron | 45.0% | |
| GCATCTTCCCATCAATCACT+AGG | + | chr3.1:82889467-82889486 | None:intergenic | 45.0% | |
| GGGGAATTGCTCTATCTAAC+TGG | - | chr3.1:82891951-82891970 | MS.gene32768:intron | 45.0% | |
| TAACAAGGTCCACCTTCAAC+TGG | + | chr3.1:82891320-82891339 | None:intergenic | 45.0% | |
| TACTTGGGGTGACATAAGAG+AGG | + | chr3.1:82889540-82889559 | None:intergenic | 45.0% | |
| TCGATAACTTCCTCGTACCA+AGG | + | chr3.1:82889020-82889039 | None:intergenic | 45.0% | |
| TGATAAGTAACACCGTGTCC+AGG | + | chr3.1:82892189-82892208 | None:intergenic | 45.0% | |
| TGCTCTATCTAACTGGTGAC+TGG | - | chr3.1:82891958-82891977 | MS.gene32768:intron | 45.0% | |
| TGGTACCCAACGAAACTTCA+TGG | + | chr3.1:82891034-82891053 | None:intergenic | 45.0% | |
| TGTCATTGAGCTTGAGCTTC+AGG | + | chr3.1:82891376-82891395 | None:intergenic | 45.0% | |
| TGTTCATGGTGGTAGATGAG+TGG | + | chr3.1:82891986-82892005 | None:intergenic | 45.0% | |
| TTACGTGAGTTAACTCACGC+AGG | - | chr3.1:82889844-82889863 | MS.gene32768:CDS | 45.0% | |
| TTTGCGTGAGTTAACTCACG+CGG | - | chr3.1:82890465-82890484 | MS.gene32768:CDS | 45.0% | |
| ! | GCTAGATTTGTTCCTGGACA+CGG | - | chr3.1:82892174-82892193 | MS.gene32768:CDS | 45.0% |
| ! | GGTATTTTCGGAATGGTTGC+AGG | - | chr3.1:82890571-82890590 | MS.gene32768:intron | 45.0% |
| ! | GGTATTTTCGGAATGGTTGC+AGG | + | chr3.1:82890590-82890571 | None:intergenic | 45.0% |
| ! | TCAAAGTGGTGGTGATCATG+AGG | - | chr3.1:82890126-82890145 | MS.gene32768:intron | 45.0% |
| ! | TTGAGTTTGTTTGGGACCAG+AGG | - | chr3.1:82890172-82890191 | MS.gene32768:CDS | 45.0% |
| !! | ATAATGGTTGGTCTGAAGCC+TGG | + | chr3.1:82891884-82891903 | None:intergenic | 45.0% |
| !!! | AACTAGCGCAGGGGTATTTT+CGG | - | chr3.1:82890559-82890578 | MS.gene32768:intron | 45.0% |
| !!! | AACTAGCGCAGGGGTATTTT+CGG | + | chr3.1:82890578-82890559 | None:intergenic | 45.0% |
| AGGTTTCTTGACGCACAAGG+AGG | - | chr3.1:82891553-82891572 | MS.gene32768:intron | 50.0% | |
| CTTGGGGTGACATAAGAGAG+GGG | + | chr3.1:82889538-82889557 | None:intergenic | 50.0% | |
| TGCGCTAGTTAACTAGCGCA+GGG | - | chr3.1:82889731-82889750 | MS.gene32768:CDS | 50.0% | |
| TGCGCTAGTTAACTAGCGCA+GGG | + | chr3.1:82889750-82889731 | None:intergenic | 50.0% | |
| TGTGAGTTGTGTTGTGGCTG+TGG | + | chr3.1:82889092-82889111 | None:intergenic | 50.0% | |
| TTGCGCTAGTTAACTAGCGC+AGG | - | chr3.1:82890548-82890567 | MS.gene32768:intron | 50.0% | |
| TTGCGCTAGTTAACTAGCGC+AGG | + | chr3.1:82890567-82890548 | None:intergenic | 50.0% | |
| TTGGGGTGACATAAGAGAGG+GGG | + | chr3.1:82889537-82889556 | None:intergenic | 50.0% | |
| TTGTGCGTCAAGAAACCTGC+CGG | + | chr3.1:82891551-82891570 | None:intergenic | 50.0% | |
| ! | AGTTTGTTTGGGACCAGAGG+TGG | - | chr3.1:82890175-82890194 | MS.gene32768:CDS | 50.0% |
| AGGTGAAGGGTCTGCTGCTA+GGG | - | chr3.1:82890675-82890694 | MS.gene32768:intron | 55.0% | |
| GACTTGGCAGACCCAGTTGA+AGG | - | chr3.1:82891305-82891324 | MS.gene32768:intron | 55.0% | |
| GCGCTAGTTAACTAGCGCAG+GGG | - | chr3.1:82890550-82890569 | MS.gene32768:intron | 55.0% | |
| GCGCTAGTTAACTAGCGCAG+GGG | + | chr3.1:82890569-82890550 | None:intergenic | 55.0% | |
| GGCAGGTTTCTTGACGCACA+AGG | - | chr3.1:82891550-82891569 | MS.gene32768:intron | 55.0% | |
| TTGGCAGACCCAGTTGAAGG+TGG | - | chr3.1:82891308-82891327 | MS.gene32768:intron | 55.0% | |
| ! | TTGTTTGGGACCAGAGGTGG+TGG | - | chr3.1:82890178-82890197 | MS.gene32768:CDS | 55.0% |
| !! | TCTAAGAGCACCACCACCTC+TGG | + | chr3.1:82890191-82890210 | None:intergenic | 55.0% |
| !!! | GCGCAGGGGTATTTTCGGAA+TGG | - | chr3.1:82890564-82890583 | MS.gene32768:intron | 55.0% |
| !!! | GCGCAGGGGTATTTTCGGAA+TGG | + | chr3.1:82890583-82890564 | None:intergenic | 55.0% |
| GAGGTGAAGGGTCTGCTGCT+AGG | - | chr3.1:82890674-82890693 | MS.gene32768:intron | 60.0% | |
| ! | AGGGCGCGAGTGATTTGTGC+TGG | - | chr3.1:82890591-82890610 | MS.gene32768:intron | 60.0% |
| ! | AGGGCGCGAGTGATTTGTGC+TGG | + | chr3.1:82890610-82890591 | None:intergenic | 60.0% |
| ! | GGGCGCGAGTGATTTGTGCT+GGG | - | chr3.1:82890592-82890611 | MS.gene32768:intron | 60.0% |
| ! | GGGCGCGAGTGATTTGTGCT+GGG | + | chr3.1:82890611-82890592 | None:intergenic | 60.0% |
| CTTGTACAGGCTGGACCGGC+AGG | - | chr3.1:82891533-82891552 | MS.gene32768:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82888918 | 82892215 | 82888918 | ID=MS.gene32768 |
| chr3.1 | mRNA | 82888918 | 82892215 | 82888918 | ID=MS.gene32768.t1;Parent=MS.gene32768 |
| chr3.1 | exon | 82892061 | 82892215 | 82892061 | ID=MS.gene32768.t1.exon1;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82892061 | 82892215 | 82892061 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82891765 | 82891831 | 82891765 | ID=MS.gene32768.t1.exon2;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82891765 | 82891831 | 82891765 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82891577 | 82891671 | 82891577 | ID=MS.gene32768.t1.exon3;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82891577 | 82891671 | 82891577 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82890383 | 82890485 | 82890383 | ID=MS.gene32768.t1.exon4;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82890383 | 82890485 | 82890383 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82890167 | 82890255 | 82890167 | ID=MS.gene32768.t1.exon5;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82890167 | 82890255 | 82890167 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82889718 | 82889874 | 82889718 | ID=MS.gene32768.t1.exon6;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82889718 | 82889874 | 82889718 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82889516 | 82889591 | 82889516 | ID=MS.gene32768.t1.exon7;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82889516 | 82889591 | 82889516 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82889304 | 82889419 | 82889304 | ID=MS.gene32768.t1.exon8;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82889304 | 82889419 | 82889304 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82889112 | 82889248 | 82889112 | ID=MS.gene32768.t1.exon9;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82889112 | 82889248 | 82889112 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| chr3.1 | exon | 82888918 | 82888996 | 82888918 | ID=MS.gene32768.t1.exon10;Parent=MS.gene32768.t1 |
| chr3.1 | CDS | 82888918 | 82888996 | 82888918 | ID=cds.MS.gene32768.t1;Parent=MS.gene32768.t1 |
| Gene Sequence |
| Protein sequence |
