AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33718


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33718.t1 MTR_4g014810 99.776 447 1 0 1 447 1 447 0.0 919
MS.gene33718.t1 MTR_1g495705 96.429 448 15 1 1 447 1 448 0.0 891
MS.gene33718.t1 MTR_1g095650 96.429 448 15 1 1 447 1 448 0.0 891
MS.gene33718.t1 MTR_1g095703 96.205 448 16 1 1 447 1 448 0.0 890
MS.gene33718.t1 MTR_6g021800 96.083 434 17 0 1 434 1 434 0.0 874
MS.gene33718.t1 MTR_6g021805 96.083 434 17 0 1 434 1 434 0.0 874
MS.gene33718.t1 MTR_1g013680 95.195 437 18 1 1 434 1 437 0.0 857
MS.gene33718.t1 MTR_1g085410 82.258 434 77 0 1 434 1 434 0.0 743
MS.gene33718.t1 MTR_1g101870 80.963 436 78 3 1 436 1 431 0.0 731
MS.gene33718.t1 MTR_1g101870 80.963 436 78 3 1 436 1 431 0.0 728
MS.gene33718.t1 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 726
MS.gene33718.t1 MTR_8g014590 79.065 449 91 2 1 446 1 449 0.0 717
MS.gene33718.t1 MTR_1g095650 95.389 347 15 1 102 447 1 347 0.0 682
MS.gene33718.t1 MTR_2g082730 73.364 428 97 2 1 426 1 413 0.0 647
MS.gene33718.t1 MTR_5g037350 67.377 469 116 1 3 434 13 481 0.0 634
MS.gene33718.t1 MTR_1g089520 70.930 430 107 3 4 432 5 417 0.0 625
MS.gene33718.t1 MTR_2g082665 68.224 428 93 2 1 426 1 387 0.0 590
MS.gene33718.t1 MTR_2g037420 64.159 452 116 4 1 447 1 411 0.0 566
MS.gene33718.t1 MTR_8g013910 64.286 448 125 5 1 432 1 429 0.0 555
MS.gene33718.t1 MTR_2g080210 63.453 446 121 5 1 443 1 407 0.0 551
MS.gene33718.t1 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 540
MS.gene33718.t1 MTR_1g112460 64.765 298 63 4 155 446 1 262 6.55e-124 361
MS.gene33718.t1 MTR_1g495735 74.627 201 41 1 240 430 106 306 2.31e-99 300
MS.gene33718.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.76e-17 82.0
MS.gene33718.t1 MTR_6g080420 38.173 427 256 5 5 426 89 512 1.39e-98 305
MS.gene33718.t1 MTR_8g106700 37.939 427 255 6 4 424 43 465 9.44e-95 293
MS.gene33718.t1 MTR_8g106700 37.939 427 255 6 4 424 49 471 1.17e-94 293
MS.gene33718.t1 MTR_8g106700 37.939 427 255 6 4 424 70 492 3.41e-94 293
MS.gene33718.t1 MTR_8g087950 36.000 425 264 5 7 426 275 696 1.71e-90 289
MS.gene33718.t1 MTR_1g101880 87.013 154 20 0 1 154 1 154 6.54e-90 274
MS.gene33718.t1 MTR_8g087950 35.748 428 267 5 7 429 348 772 8.85e-90 289
MS.gene33718.t1 MTR_4g054970 56.612 242 76 4 193 431 50 265 4.45e-81 252
MS.gene33718.t1 MTR_4g054970 75.000 44 11 0 1 44 1 44 7.02e-13 69.3
MS.gene33718.t1 MTR_1g024165 81.429 140 26 0 6 145 10 149 1.11e-78 241
MS.gene33718.t1 MTR_8g014950 76.471 102 24 0 3 104 4 105 1.50e-47 159
MS.gene33718.t1 MTR_7g094460 30.137 438 246 14 3 429 59 447 6.75e-45 162
MS.gene33718.t1 MTR_2g021300 29.613 439 247 12 3 429 46 434 4.43e-43 157
MS.gene33718.t1 MTR_7g098190 53.293 167 52 5 56 220 10 152 1.16e-42 149
MS.gene33718.t1 MTR_3g076660 29.730 444 251 15 3 429 88 487 1.13e-39 149
MS.gene33718.t1 MTR_8g014960 73.239 71 19 0 213 283 2 72 3.11e-29 113
MS.gene33718.t1 MTR_3g097250 26.471 272 143 9 9 272 85 307 5.92e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33718.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT1G07920 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT1G07930 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33718.t1 AT1G07930 98.039 255 5 0 1 255 1 255 0.0 528
MS.gene33718.t1 AT1G07930 86.207 116 16 0 331 446 254 369 1.65e-64 212
MS.gene33718.t1 AT1G18070 37.176 425 259 5 5 424 99 520 2.79e-95 297
MS.gene33718.t1 AT1G18070 37.176 425 259 5 5 424 99 520 2.79e-95 297
MS.gene33718.t1 AT1G18070 36.468 436 258 6 5 424 99 531 3.24e-92 289
MS.gene33718.t1 AT5G10630 35.529 425 266 5 7 426 239 660 7.61e-91 289
MS.gene33718.t1 AT5G10630 35.529 425 266 5 7 426 240 661 7.79e-91 289
MS.gene33718.t1 AT5G10630 35.529 425 266 5 7 426 240 661 7.79e-91 289
MS.gene33718.t1 AT5G10630 35.529 425 266 5 7 426 310 731 2.86e-90 290
MS.gene33718.t1 AT5G10630 35.529 425 266 5 7 426 315 736 3.76e-90 289
MS.gene33718.t1 AT1G35550 75.962 104 25 0 335 438 1 104 2.33e-51 169
MS.gene33718.t1 AT4G20360 30.575 435 253 10 3 426 75 471 3.00e-44 161
MS.gene33718.t1 AT4G20360 30.575 435 253 10 3 426 75 471 3.00e-44 161
MS.gene33718.t1 AT4G02930 29.841 439 247 15 3 429 63 452 4.43e-43 157
MS.gene33718.t1 AT2G31060 25.000 264 160 8 9 263 61 295 4.32e-12 68.6
MS.gene33718.t1 AT5G39900 25.839 298 158 8 4 288 64 311 6.54e-12 68.2
MS.gene33718.t1 AT5G08650 26.518 313 172 13 9 311 88 352 1.16e-11 67.4
MS.gene33718.t1 AT5G08650 26.518 313 172 13 9 311 88 352 1.23e-11 67.4
MS.gene33718.t1 AT2G31060 24.615 260 162 7 9 263 61 291 5.55e-11 65.1

Find 134 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCACGGTTCATTTCTTCT+TGG 0.216911 4.3:-83668042 None:intergenic
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 4.3:+83667020 MS.gene33718:CDS
ATCTCCATTCTTCAGGAACT+TGG 0.311336 4.3:-83667847 None:intergenic
GTCTACAAGATTGGAGGAAT+TGG 0.315206 4.3:+83667432 MS.gene33718:CDS
AAGTTAGCAGCCTCCTTGGC+TGG 0.316454 4.3:-83667672 None:intergenic
CACATTAACATTGTTGTCAT+TGG 0.329838 4.3:+83666630 MS.gene33718:CDS
TTCATTAAGAACATGATTAC+TGG 0.336870 4.3:+83666903 MS.gene33718:CDS
TCTCTCACTGAGGCACTTCC+CGG 0.352595 4.3:+83667567 MS.gene33718:CDS
TACCAGCATCTCCATTCTTC+AGG 0.357413 4.3:-83667854 None:intergenic
CTCCTTGGCTGGGTCATCCT+TGG 0.371796 4.3:-83667661 None:intergenic
GCAAAAGTCACCACCATTCC+AGG 0.373840 4.3:-83667495 None:intergenic
ACTAAGATTGACAGGCGTTC+TGG 0.379305 4.3:+83667804 MS.gene33718:CDS
TGCGTCAAACTGTGGCTGTT+GGG 0.385555 4.3:+83667961 MS.gene33718:CDS
GTCATTGGCCATGTCGACTC+TGG 0.395247 4.3:+83666645 MS.gene33718:CDS
CACCACCATTCCAGGTTTCA+TGG 0.400023 4.3:-83667487 None:intergenic
ATTCCATTCGTTCCCATCTC+TGG 0.404373 4.3:+83667273 MS.gene33718:CDS
ATACCTGCTCTTGGAATACT+TGG 0.419677 4.3:-83667190 None:intergenic
AAGGACAATGGGTAAGGAAA+AGG 0.424225 4.3:+83666605 None:intergenic
ATGAATCACCCTGGCCAGAT+TGG 0.425183 4.3:+83667714 MS.gene33718:CDS
TTCACGGGTCTGACCATCCT+TGG 0.425447 4.3:-83666994 None:intergenic
CTCATCATTGACTCCACTAC+TGG 0.425797 4.3:+83666951 MS.gene33718:CDS
ATAGCCAACCTTCTTCATAT+AGG 0.426065 4.3:-83667238 None:intergenic
CTTAATGAAATCCCTGTGTC+CGG 0.429384 4.3:-83666889 None:intergenic
AATTTCATCATACCTGCTCT+TGG 0.430266 4.3:-83667199 None:intergenic
GGCTTGTCTGATGGCCTCTT+AGG 0.432559 4.3:-83667387 None:intergenic
CACCCTGGCCAGATTGGAAA+TGG 0.432985 4.3:+83667720 MS.gene33718:CDS
GCCCCTCCGACTACCACTTC+AGG 0.433104 4.3:+83667407 MS.gene33718:CDS
GAGGTGTGGCAGTCAAGCAC+AGG 0.434332 4.3:-83667750 None:intergenic
GGGCATAGCCATTTCCAATC+TGG 0.448022 4.3:-83667728 None:intergenic
AGCGTTCATTCAAGTATGCT+TGG 0.450783 4.3:+83666763 MS.gene33718:CDS
TGTGGCTGTTGGGGTTATCA+AGG 0.455009 4.3:+83667971 MS.gene33718:CDS
CTTCAGGATGTCTACAAGAT+TGG 0.458119 4.3:+83667423 MS.gene33718:CDS
TTAGTTATCTTAACAGTGCC+AGG 0.458448 4.3:-83668011 None:intergenic
GCGTTCATTCAAGTATGCTT+GGG 0.461276 4.3:+83666764 MS.gene33718:CDS
AGTCTCAACAACCATGGGCT+TGG 0.462350 4.3:-83667895 None:intergenic
CTCAACAACCATGGGCTTGG+TGG 0.464097 4.3:-83667892 None:intergenic
TTAATGAAATCCCTGTGTCC+GGG 0.473933 4.3:-83666888 None:intergenic
TAGCCATTTCCAATCTGGCC+AGG 0.474048 4.3:-83667723 None:intergenic
ATCAAATCAATGAGCCTAAG+AGG 0.476814 4.3:+83667373 MS.gene33718:CDS
TGTGAAGTTAGCAGCCTCCT+TGG 0.480074 4.3:-83667676 None:intergenic
TACAAATCTTGACTGGTACA+AGG 0.490199 4.3:+83667326 MS.gene33718:CDS
GAGCCCAAGTTCCTGAAGAA+TGG 0.491587 4.3:+83667843 MS.gene33718:CDS
AGTCGGAGGGGCTTGTCTGA+TGG 0.496444 4.3:-83667396 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 4.3:-83667286 None:intergenic
GATTGACAGGCGTTCTGGTA+AGG 0.497183 4.3:+83667809 MS.gene33718:CDS
AGCTTGTTACTAAGATTGAC+AGG 0.504274 4.3:+83667796 MS.gene33718:CDS
TGGGTCATCCTTGGTGTTTG+AGG 0.504620 4.3:-83667652 None:intergenic
CTTGGAATACTTGGGTGTAG+TGG 0.514389 4.3:-83667181 None:intergenic
TGAGAACAGCACAATCAGCT+TGG 0.516820 4.3:-83666932 None:intergenic
GAGAACAGCACAATCAGCTT+GGG 0.517298 4.3:-83666931 None:intergenic
TATCAAGGGTGTGGAGAAGA+AGG 0.517386 4.3:+83667986 MS.gene33718:CDS
ACTTCAGTTTGCAGTCCAGT+TGG 0.517541 4.3:-83667519 None:intergenic
CAAGAGCCTCAAGAAGTGTT+GGG 0.518886 4.3:-83667350 None:intergenic
ATTAAATCCCACATTGTCAC+CGG 0.519224 4.3:-83667586 None:intergenic
TGTTAAGAATGTTTCTGTCA+AGG 0.521267 4.3:+83667608 MS.gene33718:CDS
CAGGATGTCTACAAGATTGG+AGG 0.523217 4.3:+83667426 MS.gene33718:CDS
TCTCCATTCTTCAGGAACTT+GGG 0.527363 4.3:-83667846 None:intergenic
TTGCTTTCACTCTTGGTGTG+AGG 0.528420 4.3:+83667027 MS.gene33718:CDS
TTCCTGAAGAATGGAGATGC+TGG 0.528428 4.3:+83667852 MS.gene33718:CDS
AGTTTCATCCTATATGAAGA+AGG 0.530606 4.3:+83667230 MS.gene33718:CDS
TCAAGAGCCTCAAGAAGTGT+TGG 0.532468 4.3:-83667351 None:intergenic
CTCAAGGCTGAGCGTGAAAG+AGG 0.533500 4.3:+83666798 MS.gene33718:CDS
AGTTAGCAGCCTCCTTGGCT+GGG 0.535132 4.3:-83667671 None:intergenic
TCATTGGCCATGTCGACTCT+GGG 0.536467 4.3:+83666646 MS.gene33718:CDS
AGCAAACTTGACAGCAATGT+GGG 0.541075 4.3:-83667772 None:intergenic
CCAGTCTCAACACGTCCGAC+AGG 0.541163 4.3:-83667462 None:intergenic
CCTGTCGGACGTGTTGAGAC+TGG 0.541718 4.3:+83667462 MS.gene33718:CDS
AGCTTCAAAACCACCAGTAG+TGG 0.543721 4.3:-83666964 None:intergenic
TTCTCTGAATATCCTCCACT+TGG 0.543785 4.3:+83667918 MS.gene33718:CDS
AGGTGTGGCAGTCAAGCACA+GGG 0.544526 4.3:-83667749 None:intergenic
TGCACTGTCATTGATGCCCC+CGG 0.544718 4.3:+83666870 MS.gene33718:CDS
TCATCCTATATGAAGAAGGT+TGG 0.544820 4.3:+83667234 MS.gene33718:CDS
CACTTGATCTACAAGCTTGG+AGG 0.545798 4.3:+83666687 MS.gene33718:CDS
ATCATTGACTCCACTACTGG+TGG 0.550177 4.3:+83666954 MS.gene33718:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 4.3:+83666684 MS.gene33718:CDS
ATGCGTCAAACTGTGGCTGT+TGG 0.557227 4.3:+83667960 MS.gene33718:CDS
GAAGCTGGTATTTCCAAGGA+TGG 0.557613 4.3:+83666981 MS.gene33718:CDS
TCAACAACCATGGGCTTGGT+GGG 0.557624 4.3:-83667891 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 4.3:-83667010 None:intergenic
TGTTGGGGTTATCAAGGGTG+TGG 0.563472 4.3:+83667977 MS.gene33718:CDS
GCATATCTCTGACAGCAAAA+CGG 0.563498 4.3:-83667941 None:intergenic
ACAAATCTTGACTGGTACAA+GGG 0.563768 4.3:+83667327 MS.gene33718:CDS
GTGGCTGTTGGGGTTATCAA+GGG 0.565604 4.3:+83667972 MS.gene33718:CDS
CAGGTATGATGAAATTGTGA+AGG 0.569288 4.3:+83667206 MS.gene33718:CDS
TCTGGGAAGTCAACTACCAC+TGG 0.570179 4.3:+83666663 MS.gene33718:CDS
TAATGAAATCCCTGTGTCCG+GGG 0.570266 4.3:-83666887 None:intergenic
CACCCAAGTATTCCAAGAGC+AGG 0.570501 4.3:+83667187 MS.gene33718:CDS
TTGGGTTCTTGACAAGCTCA+AGG 0.572280 4.3:+83666782 MS.gene33718:CDS
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 4.3:-83667009 None:intergenic
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 4.3:-83667409 None:intergenic
GATGATTCCCACCAAGCCCA+TGG 0.580619 4.3:+83667884 MS.gene33718:CDS
AAACCAGAGATGGGAACGAA+TGG 0.584939 4.3:-83667276 None:intergenic
GCGTCAAACTGTGGCTGTTG+GGG 0.590275 4.3:+83667962 MS.gene33718:CDS
CACCAAGGATGACCCAGCCA+AGG 0.594197 4.3:+83667659 MS.gene33718:CDS
GAGAAAGTCTCAACAACCAT+GGG 0.598729 4.3:-83667900 None:intergenic
TTGACTTCCCAGAGTCGACA+TGG 0.600770 4.3:-83666653 None:intergenic
TTGACAAGCGTGTGATCGAG+AGG 0.602725 4.3:+83666712 MS.gene33718:CDS
GGCACTTCCCGGTGACAATG+TGG 0.604709 4.3:+83667578 MS.gene33718:CDS
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 4.3:-83667285 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 4.3:-83667408 None:intergenic
AGCGCTCTACAAATCTTGAC+TGG 0.610562 4.3:+83667319 MS.gene33718:CDS
GGTGTGGAGAAGAAGGAACC+TGG 0.612825 4.3:+83667993 MS.gene33718:CDS
AGAGAAAGTCTCAACAACCA+TGG 0.614767 4.3:-83667901 None:intergenic
GCACTTCCCGGTGACAATGT+GGG 0.616830 4.3:+83667579 MS.gene33718:CDS
GCAAACTGAAGTCAAGTCTG+TGG 0.619692 4.3:+83667530 MS.gene33718:CDS
TCACACCAAGAGTGAAAGCA+AGG 0.621193 4.3:-83667025 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 4.3:-83667420 None:intergenic
CAAGGGCCCAACACTTCTTG+AGG 0.622743 4.3:+83667344 MS.gene33718:CDS
AGCCATTTCCAATCTGGCCA+GGG 0.623271 4.3:-83667722 None:intergenic
ACAGCAAAACGGCCAAGTGG+AGG 0.624787 4.3:-83667930 None:intergenic
TACCTGCTCTTGGAATACTT+GGG 0.632334 4.3:-83667189 None:intergenic
GGAATTGGAACTGTTCCTGT+CGG 0.634263 4.3:+83667447 MS.gene33718:CDS
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 4.3:-83667410 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 4.3:-83667413 None:intergenic
CAGCAAACTTGACAGCAATG+TGG 0.638328 4.3:-83667773 None:intergenic
GAGACTGGTACCATGAAACC+TGG 0.643102 4.3:+83667477 MS.gene33718:CDS
AATGATCTGCTGCTGCAACA+AGG 0.643325 4.3:+83667052 MS.gene33718:CDS
TGACAGCAATGTGGGAGGTG+TGG 0.650950 4.3:-83667764 None:intergenic
AATGAAATCCCTGTGTCCGG+GGG 0.661737 4.3:-83666886 None:intergenic
TCTGTCAAGGATCTCAAGCG+TGG 0.663761 4.3:+83667621 MS.gene33718:CDS
TTAAATCCCACATTGTCACC+GGG 0.665158 4.3:-83667585 None:intergenic
CAGAGATATGCGTCAAACTG+TGG 0.666313 4.3:+83667953 MS.gene33718:CDS
CAAGGATGACCCAGCCAAGG+AGG 0.668893 4.3:+83667662 MS.gene33718:CDS
TTCTGGTAAGGAGATCGAGA+AGG 0.668930 4.3:+83667821 MS.gene33718:CDS
CTGACAGCAAAACGGCCAAG+TGG 0.679918 4.3:-83667933 None:intergenic
GTGATTATCATGAATCACCC+TGG 0.681230 4.3:+83667705 MS.gene33718:CDS
TACCATGAAACCTGGAATGG+TGG 0.682936 4.3:+83667485 MS.gene33718:CDS
CTTGTAGATCAAGTGACCAG+TGG 0.695213 4.3:-83666679 None:intergenic
AAACTTGACAGCAATGTGGG+AGG 0.695398 4.3:-83667769 None:intergenic
TCACAATTGACATTGCTCTG+TGG 0.708352 4.3:+83666823 MS.gene33718:CDS
TGGTACCATGAAACCTGGAA+TGG 0.712415 4.3:+83667482 MS.gene33718:CDS
GGTGTGGCAGTCAAGCACAG+GGG 0.731105 4.3:-83667748 None:intergenic
TTATGTTGCCTCAAACACCA+AGG 0.751394 4.3:+83667644 MS.gene33718:CDS
GCATCATGAATCTCTCACTG+AGG 0.754777 4.3:+83667557 MS.gene33718:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCTAATGCAACTAAAT+AGG - chr4.3:83667106-83667125 None:intergenic 20.0%
!! TAATCTAATGCAACTAAATA+GGG - chr4.3:83667105-83667124 None:intergenic 20.0%
! AATCTAATGCAACTAAATAG+GGG - chr4.3:83667104-83667123 None:intergenic 25.0%
! TTCATTAAGAACATGATTAC+TGG + chr4.3:83666903-83666922 MS.gene33718:CDS 25.0%
!! TTTTTGATATCTTGAACAGA+TGG + chr4.3:83667155-83667174 MS.gene33718:intron 25.0%
AGTTTCATCCTATATGAAGA+AGG + chr4.3:83667230-83667249 MS.gene33718:CDS 30.0%
CACATTAACATTGTTGTCAT+TGG + chr4.3:83666630-83666649 MS.gene33718:CDS 30.0%
! GAACGAATGGAATTTTATCT+GGG - chr4.3:83667266-83667285 None:intergenic 30.0%
! TGTTAAGAATGTTTCTGTCA+AGG + chr4.3:83667608-83667627 MS.gene33718:CDS 30.0%
AATTTCATCATACCTGCTCT+TGG - chr4.3:83667202-83667221 None:intergenic 35.0%
ACAAATCTTGACTGGTACAA+GGG + chr4.3:83667327-83667346 MS.gene33718:CDS 35.0%
ATAGCCAACCTTCTTCATAT+AGG - chr4.3:83667241-83667260 None:intergenic 35.0%
ATCAAATCAATGAGCCTAAG+AGG + chr4.3:83667373-83667392 MS.gene33718:CDS 35.0%
ATTAAATCCCACATTGTCAC+CGG - chr4.3:83667589-83667608 None:intergenic 35.0%
CAGGTATGATGAAATTGTGA+AGG + chr4.3:83667206-83667225 MS.gene33718:CDS 35.0%
TACAAATCTTGACTGGTACA+AGG + chr4.3:83667326-83667345 MS.gene33718:CDS 35.0%
TCATCCTATATGAAGAAGGT+TGG + chr4.3:83667234-83667253 MS.gene33718:CDS 35.0%
TTAGTTATCTTAACAGTGCC+AGG - chr4.3:83668014-83668033 None:intergenic 35.0%
! GGAACGAATGGAATTTTATC+TGG - chr4.3:83667267-83667286 None:intergenic 35.0%
!! AGCTTGTTACTAAGATTGAC+AGG + chr4.3:83667796-83667815 MS.gene33718:CDS 35.0%
!!! TTTTGAAGCTGGTATTTCCA+AGG + chr4.3:83666977-83666996 MS.gene33718:CDS 35.0%
AGAGAAAGTCTCAACAACCA+TGG - chr4.3:83667904-83667923 None:intergenic 40.0%
AGCAAACTTGACAGCAATGT+GGG - chr4.3:83667775-83667794 None:intergenic 40.0%
AGCGTTCATTCAAGTATGCT+TGG + chr4.3:83666763-83666782 MS.gene33718:CDS 40.0%
ATACCTGCTCTTGGAATACT+TGG - chr4.3:83667193-83667212 None:intergenic 40.0%
ATCTCCATTCTTCAGGAACT+TGG - chr4.3:83667850-83667869 None:intergenic 40.0%
ATCTTGTAGACATCCTGAAG+TGG - chr4.3:83667423-83667442 None:intergenic 40.0%
CTTAATGAAATCCCTGTGTC+CGG - chr4.3:83666892-83666911 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG + chr4.3:83667423-83667442 MS.gene33718:CDS 40.0%
GAGAAAGTCTCAACAACCAT+GGG - chr4.3:83667903-83667922 None:intergenic 40.0%
GCATATCTCTGACAGCAAAA+CGG - chr4.3:83667944-83667963 None:intergenic 40.0%
GCGTTCATTCAAGTATGCTT+GGG + chr4.3:83666764-83666783 MS.gene33718:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr4.3:83667432-83667451 MS.gene33718:CDS 40.0%
GTGATTATCATGAATCACCC+TGG + chr4.3:83667705-83667724 MS.gene33718:CDS 40.0%
TACCTGCTCTTGGAATACTT+GGG - chr4.3:83667192-83667211 None:intergenic 40.0%
TCACAATTGACATTGCTCTG+TGG + chr4.3:83666823-83666842 MS.gene33718:CDS 40.0%
TCTCCATTCTTCAGGAACTT+GGG - chr4.3:83667849-83667868 None:intergenic 40.0%
TTAAATCCCACATTGTCACC+GGG - chr4.3:83667588-83667607 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+GGG - chr4.3:83666891-83666910 None:intergenic 40.0%
TTATGTTGCCTCAAACACCA+AGG + chr4.3:83667644-83667663 MS.gene33718:CDS 40.0%
TTCTCTGAATATCCTCCACT+TGG + chr4.3:83667918-83667937 MS.gene33718:CDS 40.0%
AAACCAGAGATGGGAACGAA+TGG - chr4.3:83667279-83667298 None:intergenic 45.0%
AAACTTGACAGCAATGTGGG+AGG - chr4.3:83667772-83667791 None:intergenic 45.0%
AATGATCTGCTGCTGCAACA+AGG + chr4.3:83667052-83667071 MS.gene33718:CDS 45.0%
ACTAAGATTGACAGGCGTTC+TGG + chr4.3:83667804-83667823 MS.gene33718:CDS 45.0%
ACTTCAGTTTGCAGTCCAGT+TGG - chr4.3:83667522-83667541 None:intergenic 45.0%
AGACATCCTGAAGTGGTAGT+CGG - chr4.3:83667416-83667435 None:intergenic 45.0%
AGCGCTCTACAAATCTTGAC+TGG + chr4.3:83667319-83667338 MS.gene33718:CDS 45.0%
AGCTTCAAAACCACCAGTAG+TGG - chr4.3:83666967-83666986 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr4.3:83667289-83667308 None:intergenic 45.0%
ATTCCATTCGTTCCCATCTC+TGG + chr4.3:83667273-83667292 MS.gene33718:CDS 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr4.3:83666687-83666706 MS.gene33718:CDS 45.0%
CAGAGATATGCGTCAAACTG+TGG + chr4.3:83667953-83667972 MS.gene33718:CDS 45.0%
CAGCAAACTTGACAGCAATG+TGG - chr4.3:83667776-83667795 None:intergenic 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr4.3:83667426-83667445 MS.gene33718:CDS 45.0%
CTTGGAATACTTGGGTGTAG+TGG - chr4.3:83667184-83667203 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG - chr4.3:83666682-83666701 None:intergenic 45.0%
GAAGCTGGTATTTCCAAGGA+TGG + chr4.3:83666981-83667000 MS.gene33718:CDS 45.0%
GAGAACAGCACAATCAGCTT+GGG - chr4.3:83666934-83666953 None:intergenic 45.0%
GCAAACTGAAGTCAAGTCTG+TGG + chr4.3:83667530-83667549 MS.gene33718:CDS 45.0%
GCATCATGAATCTCTCACTG+AGG + chr4.3:83667557-83667576 MS.gene33718:CDS 45.0%
GGAATTGGAACTGTTCCTGT+CGG + chr4.3:83667447-83667466 MS.gene33718:CDS 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr4.3:83666684-83666703 MS.gene33718:CDS 45.0%
TAATGAAATCCCTGTGTCCG+GGG - chr4.3:83666890-83666909 None:intergenic 45.0%
TACCAGCATCTCCATTCTTC+AGG - chr4.3:83667857-83667876 None:intergenic 45.0%
TACCATGAAACCTGGAATGG+TGG + chr4.3:83667485-83667504 MS.gene33718:CDS 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr4.3:83667028-83667047 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr4.3:83667288-83667307 None:intergenic 45.0%
TGAGAACAGCACAATCAGCT+TGG - chr4.3:83666935-83666954 None:intergenic 45.0%
TGGTACCATGAAACCTGGAA+TGG + chr4.3:83667482-83667501 MS.gene33718:CDS 45.0%
TTCCTGAAGAATGGAGATGC+TGG + chr4.3:83667852-83667871 MS.gene33718:CDS 45.0%
TTCTGGTAAGGAGATCGAGA+AGG + chr4.3:83667821-83667840 MS.gene33718:CDS 45.0%
TTGGGTTCTTGACAAGCTCA+AGG + chr4.3:83666782-83666801 MS.gene33718:CDS 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr4.3:83667013-83667032 None:intergenic 45.0%
! TATCAAGGGTGTGGAGAAGA+AGG + chr4.3:83667986-83668005 MS.gene33718:CDS 45.0%
! TCAAGAGCCTCAAGAAGTGT+TGG - chr4.3:83667354-83667373 None:intergenic 45.0%
! TTGCTTTCACTCTTGGTGTG+AGG + chr4.3:83667027-83667046 MS.gene33718:CDS 45.0%
!! ATCATTGACTCCACTACTGG+TGG + chr4.3:83666954-83666973 MS.gene33718:CDS 45.0%
!! CAAGAGCCTCAAGAAGTGTT+GGG - chr4.3:83667353-83667372 None:intergenic 45.0%
!! CTCATCATTGACTCCACTAC+TGG + chr4.3:83666951-83666970 MS.gene33718:CDS 45.0%
!!! ACTACTGGTGGTTTTGAAGC+TGG + chr4.3:83666966-83666985 MS.gene33718:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr4.3:83667282-83667301 MS.gene33718:CDS 45.0%
AATGAAATCCCTGTGTCCGG+GGG - chr4.3:83666889-83666908 None:intergenic 50.0%
AGCCATTTCCAATCTGGCCA+GGG - chr4.3:83667725-83667744 None:intergenic 50.0%
AGTCTCAACAACCATGGGCT+TGG - chr4.3:83667898-83667917 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG - chr4.3:83667412-83667431 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG + chr4.3:83667714-83667733 MS.gene33718:CDS 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr4.3:83667960-83667979 MS.gene33718:CDS 50.0%
CACCACCATTCCAGGTTTCA+TGG - chr4.3:83667490-83667509 None:intergenic 50.0%
CACCCAAGTATTCCAAGAGC+AGG + chr4.3:83667187-83667206 MS.gene33718:CDS 50.0%
GAGACTGGTACCATGAAACC+TGG + chr4.3:83667477-83667496 MS.gene33718:CDS 50.0%
GAGCCCAAGTTCCTGAAGAA+TGG + chr4.3:83667843-83667862 MS.gene33718:CDS 50.0%
GATTGACAGGCGTTCTGGTA+AGG + chr4.3:83667809-83667828 MS.gene33718:CDS 50.0%
GCAAAAGTCACCACCATTCC+AGG - chr4.3:83667498-83667517 None:intergenic 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr4.3:83667020-83667039 MS.gene33718:CDS 50.0%
GGGCATAGCCATTTCCAATC+TGG - chr4.3:83667731-83667750 None:intergenic 50.0%
GTGGCTGTTGGGGTTATCAA+GGG + chr4.3:83667972-83667991 MS.gene33718:CDS 50.0%
TAGCCATTTCCAATCTGGCC+AGG - chr4.3:83667726-83667745 None:intergenic 50.0%
TCTGGGAAGTCAACTACCAC+TGG + chr4.3:83666663-83666682 MS.gene33718:CDS 50.0%
TCTGTCAAGGATCTCAAGCG+TGG + chr4.3:83667621-83667640 MS.gene33718:CDS 50.0%
TGCGTCAAACTGTGGCTGTT+GGG + chr4.3:83667961-83667980 MS.gene33718:CDS 50.0%
TGTGAAGTTAGCAGCCTCCT+TGG - chr4.3:83667679-83667698 None:intergenic 50.0%
TGTGGCTGTTGGGGTTATCA+AGG + chr4.3:83667971-83667990 MS.gene33718:CDS 50.0%
TGTTGGGGTTATCAAGGGTG+TGG + chr4.3:83667977-83667996 MS.gene33718:CDS 50.0%
TTGACAAGCGTGTGATCGAG+AGG + chr4.3:83666712-83666731 MS.gene33718:CDS 50.0%
TTGACTTCCCAGAGTCGACA+TGG - chr4.3:83666656-83666675 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr4.3:83667012-83667031 None:intergenic 50.0%
! GTGGTGACTTTTGCTCCAAC+TGG + chr4.3:83667504-83667523 MS.gene33718:CDS 50.0%
! TCAACAACCATGGGCTTGGT+GGG - chr4.3:83667894-83667913 None:intergenic 50.0%
!! TCATTGGCCATGTCGACTCT+GGG + chr4.3:83666646-83666665 MS.gene33718:CDS 50.0%
!! TGGGTCATCCTTGGTGTTTG+AGG - chr4.3:83667655-83667674 None:intergenic 50.0%
!!! CGTTCCCATCTCTGGTTTTG+AGG + chr4.3:83667281-83667300 MS.gene33718:CDS 50.0%
AAGTTAGCAGCCTCCTTGGC+TGG - chr4.3:83667675-83667694 None:intergenic 55.0%
ACAGCAAAACGGCCAAGTGG+AGG - chr4.3:83667933-83667952 None:intergenic 55.0%
AGGTGTGGCAGTCAAGCACA+GGG - chr4.3:83667752-83667771 None:intergenic 55.0%
AGTTAGCAGCCTCCTTGGCT+GGG - chr4.3:83667674-83667693 None:intergenic 55.0%
CAAGGGCCCAACACTTCTTG+AGG + chr4.3:83667344-83667363 MS.gene33718:CDS 55.0%
CACCCTGGCCAGATTGGAAA+TGG + chr4.3:83667720-83667739 MS.gene33718:CDS 55.0%
CATCCTGAAGTGGTAGTCGG+AGG - chr4.3:83667413-83667432 None:intergenic 55.0%
CTCAACAACCATGGGCTTGG+TGG - chr4.3:83667895-83667914 None:intergenic 55.0%
CTCAAGGCTGAGCGTGAAAG+AGG + chr4.3:83666798-83666817 MS.gene33718:CDS 55.0%
CTGACAGCAAAACGGCCAAG+TGG - chr4.3:83667936-83667955 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr4.3:83667884-83667903 MS.gene33718:CDS 55.0%
GCACTTCCCGGTGACAATGT+GGG + chr4.3:83667579-83667598 MS.gene33718:CDS 55.0%
GCGTCAAACTGTGGCTGTTG+GGG + chr4.3:83667962-83667981 MS.gene33718:CDS 55.0%
GGCTTGTCTGATGGCCTCTT+AGG - chr4.3:83667390-83667409 None:intergenic 55.0%
GGTGTGGAGAAGAAGGAACC+TGG + chr4.3:83667993-83668012 MS.gene33718:CDS 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG - chr4.3:83667411-83667430 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr4.3:83667767-83667786 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+CGG + chr4.3:83666870-83666889 MS.gene33718:CDS 55.0%
TTCACGGGTCTGACCATCCT+TGG - chr4.3:83666997-83667016 None:intergenic 55.0%
! TCTCTCACTGAGGCACTTCC+CGG + chr4.3:83667567-83667586 MS.gene33718:CDS 55.0%
!! GTCATTGGCCATGTCGACTC+TGG + chr4.3:83666645-83666664 MS.gene33718:CDS 55.0%
AGTCGGAGGGGCTTGTCTGA+TGG - chr4.3:83667399-83667418 None:intergenic 60.0%
CAAGGATGACCCAGCCAAGG+AGG + chr4.3:83667662-83667681 MS.gene33718:CDS 60.0%
CACCAAGGATGACCCAGCCA+AGG + chr4.3:83667659-83667678 MS.gene33718:CDS 60.0%
CATTGATGCCCCCGGACACA+GGG + chr4.3:83666878-83666897 MS.gene33718:CDS 60.0%
CCAGTCTCAACACGTCCGAC+AGG - chr4.3:83667465-83667484 None:intergenic 60.0%
CCTGTCGGACGTGTTGAGAC+TGG + chr4.3:83667462-83667481 MS.gene33718:CDS 60.0%
CTCCTTGGCTGGGTCATCCT+TGG - chr4.3:83667664-83667683 None:intergenic 60.0%
GAGGTGTGGCAGTCAAGCAC+AGG - chr4.3:83667753-83667772 None:intergenic 60.0%
GGCACTTCCCGGTGACAATG+TGG + chr4.3:83667578-83667597 MS.gene33718:CDS 60.0%
GGTGTGGCAGTCAAGCACAG+GGG - chr4.3:83667751-83667770 None:intergenic 60.0%
TCATTGATGCCCCCGGACAC+AGG + chr4.3:83666877-83666896 MS.gene33718:CDS 60.0%
GCCCCTCCGACTACCACTTC+AGG + chr4.3:83667407-83667426 MS.gene33718:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 83666612 83668055 83666612 ID=MS.gene33718
chr4.3 mRNA 83666612 83668055 83666612 ID=MS.gene33718.t1;Parent=MS.gene33718
chr4.3 exon 83666612 83667073 83666612 ID=MS.gene33718.t1.exon1;Parent=MS.gene33718.t1
chr4.3 CDS 83666612 83667073 83666612 ID=cds.MS.gene33718.t1;Parent=MS.gene33718.t1
chr4.3 exon 83667174 83668055 83667174 ID=MS.gene33718.t1.exon2;Parent=MS.gene33718.t1
chr4.3 CDS 83667174 83668055 83667174 ID=cds.MS.gene33718.t1;Parent=MS.gene33718.t1
Gene Sequence

>MS.gene33718

ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGGAAGTCAACTACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGTACATCCCAAGCTGATTGTGCTGTTCTCATCATTGACTCCACTACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAAATGATCTGCTGCTGCAACAAGGTATTTGAACTGTTAAATTTTTTGATGCCCCTATTTAGTTGCATTAGATTATTTTTATAGTTAGTTTATACAAGTACTGATTTTTTGATATCTTGAACAGATGGATGCCACTACACCCAAGTATTCCAAGAGCAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATATGAAGAAGGTTGGCTATAACCCAGATAAAATTCCATTCGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGCCCAACACTTCTTGAGGCTCTTGATCAAATCAATGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTTCCTGTCGGACGTGTTGAGACTGGTACCATGAAACCTGGAATGGTGGTGACTTTTGCTCCAACTGGACTGCAAACTGAAGTCAAGTCTGTGGAGATGCATCATGAATCTCTCACTGAGGCACTTCCCGGTGACAATGTGGGATTTAATGTTAAGAATGTTTCTGTCAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACACCAAGGATGACCCAGCCAAGGAGGCTGCTAACTTCACATCTCAAGTGATTATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTGCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACTAAGATTGACAGGCGTTCTGGTAAGGAGATCGAGAAGGAGCCCAAGTTCCTGAAGAATGGAGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTTGTTGAGACTTTCTCTGAATATCCTCCACTTGGCCGTTTTGCTGTCAGAGATATGCGTCAAACTGTGGCTGTTGGGGTTATCAAGGGTGTGGAGAAGAAGGAACCTGGCACTGTTAAGATAACTAAGTCAGCAGCCAAGAAGAAATGA

Protein sequence

>MS.gene33718.t1

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYMKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTMKPGMVVTFAPTGLQTEVKSVEMHHESLTEALPGDNVGFNVKNVSVKDLKRGYVASNTKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKGVEKKEPGTVKITKSAAKKK