Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33742.t1 | XP_003608194.2 | 98.5 | 544 | 8 | 0 | 1 | 544 | 1 | 544 | 0.00E+00 | 1091.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33742.t1 | Q8GWA1 | 67.5 | 510 | 154 | 2 | 34 | 543 | 13 | 510 | 1.4e-202 | 707.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33742.t1 | G7JQS9 | 98.5 | 544 | 8 | 0 | 1 | 544 | 1 | 544 | 0.0e+00 | 1091.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene33742 | 0.82149 | 3.93E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene33742 | 0.81427 | 1.68E-51 | -1.69E-46 |
| MS.gene051959 | MS.gene33742 | 0.82859 | 8.26E-55 | -1.69E-46 |
| MS.gene051960 | MS.gene33742 | 0.832957 | 7.03E-56 | -1.69E-46 |
| MS.gene052053 | MS.gene33742 | 0.839286 | 1.74E-57 | -1.69E-46 |
| MS.gene052537 | MS.gene33742 | 0.922116 | 1.49E-88 | -1.69E-46 |
| MS.gene052570 | MS.gene33742 | 0.830634 | 2.63E-55 | -1.69E-46 |
| MS.gene055549 | MS.gene33742 | 0.822542 | 2.24E-53 | -1.69E-46 |
| MS.gene055550 | MS.gene33742 | 0.824585 | 7.45E-54 | -1.69E-46 |
| MS.gene057001 | MS.gene33742 | 0.809287 | 2.04E-50 | -1.69E-46 |
| MS.gene060522 | MS.gene33742 | 0.804808 | 1.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33742.t1 | MTR_4g090580 | 98.529 | 544 | 8 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1110 |
| MS.gene33742.t1 | MTR_5g071250 | 75.885 | 452 | 109 | 0 | 92 | 543 | 50 | 501 | 0.0 | 722 |
| MS.gene33742.t1 | MTR_3g464380 | 68.548 | 496 | 150 | 3 | 54 | 543 | 9 | 504 | 0.0 | 685 |
| MS.gene33742.t1 | MTR_5g071250 | 75.291 | 344 | 85 | 0 | 92 | 435 | 50 | 393 | 0.0 | 541 |
| MS.gene33742.t1 | MTR_4g091240 | 38.611 | 360 | 200 | 9 | 105 | 449 | 51 | 404 | 7.39e-72 | 240 |
| MS.gene33742.t1 | MTR_4g091240 | 34.167 | 120 | 70 | 3 | 428 | 543 | 464 | 578 | 3.28e-12 | 69.3 |
| MS.gene33742.t1 | MTR_2g011730 | 39.595 | 346 | 193 | 8 | 105 | 440 | 51 | 390 | 1.41e-71 | 239 |
| MS.gene33742.t1 | MTR_2g011730 | 36.667 | 120 | 67 | 3 | 428 | 543 | 464 | 578 | 2.88e-14 | 75.9 |
| MS.gene33742.t1 | MTR_4g045997 | 36.719 | 384 | 214 | 10 | 81 | 449 | 37 | 406 | 2.83e-67 | 227 |
| MS.gene33742.t1 | MTR_4g045997 | 36.579 | 380 | 220 | 9 | 81 | 449 | 37 | 406 | 4.55e-67 | 227 |
| MS.gene33742.t1 | MTR_4g045997 | 36.667 | 120 | 67 | 3 | 428 | 543 | 463 | 577 | 2.76e-15 | 79.3 |
| MS.gene33742.t1 | MTR_4g045993 | 35.150 | 367 | 200 | 10 | 105 | 455 | 44 | 388 | 2.77e-64 | 220 |
| MS.gene33742.t1 | MTR_4g045993 | 35.000 | 120 | 69 | 3 | 428 | 543 | 455 | 569 | 9.59e-13 | 71.2 |
| MS.gene33742.t1 | MTR_4g091240 | 35.644 | 303 | 176 | 8 | 162 | 449 | 2 | 300 | 1.78e-51 | 183 |
| MS.gene33742.t1 | MTR_4g091240 | 34.167 | 120 | 70 | 3 | 428 | 543 | 360 | 474 | 2.35e-12 | 69.7 |
| MS.gene33742.t1 | MTR_0931s0010 | 29.176 | 425 | 262 | 12 | 122 | 543 | 254 | 642 | 6.75e-38 | 149 |
| MS.gene33742.t1 | MTR_8g094730 | 24.086 | 465 | 280 | 16 | 105 | 532 | 84 | 512 | 1.86e-13 | 73.2 |
| MS.gene33742.t1 | MTR_8g094730 | 24.086 | 465 | 280 | 16 | 105 | 532 | 84 | 512 | 1.99e-13 | 73.2 |
| MS.gene33742.t1 | MTR_8g094730 | 24.576 | 354 | 226 | 11 | 198 | 532 | 64 | 395 | 7.94e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33742.t1 | AT1G07180 | 68.980 | 490 | 150 | 1 | 54 | 543 | 23 | 510 | 0.0 | 691 |
| MS.gene33742.t1 | AT2G29990 | 72.848 | 453 | 123 | 0 | 91 | 543 | 56 | 508 | 0.0 | 688 |
| MS.gene33742.t1 | AT4G21490 | 35.765 | 425 | 226 | 11 | 46 | 455 | 3 | 395 | 3.76e-66 | 225 |
| MS.gene33742.t1 | AT4G21490 | 32.231 | 121 | 73 | 3 | 427 | 543 | 465 | 580 | 1.20e-11 | 67.8 |
| MS.gene33742.t1 | AT4G21490 | 35.765 | 425 | 225 | 11 | 46 | 455 | 3 | 394 | 6.06e-66 | 224 |
| MS.gene33742.t1 | AT4G21490 | 32.231 | 121 | 73 | 3 | 427 | 543 | 464 | 579 | 1.21e-11 | 67.8 |
| MS.gene33742.t1 | AT4G28220 | 38.576 | 337 | 188 | 9 | 109 | 434 | 52 | 380 | 1.42e-65 | 221 |
| MS.gene33742.t1 | AT4G28220 | 38.576 | 337 | 188 | 9 | 109 | 434 | 52 | 380 | 3.88e-65 | 222 |
| MS.gene33742.t1 | AT4G28220 | 36.667 | 120 | 67 | 3 | 428 | 543 | 457 | 571 | 2.76e-13 | 72.8 |
| MS.gene33742.t1 | AT4G05020 | 41.745 | 321 | 175 | 7 | 105 | 417 | 57 | 373 | 1.45e-63 | 218 |
| MS.gene33742.t1 | AT4G05020 | 32.500 | 120 | 72 | 3 | 428 | 543 | 468 | 582 | 3.09e-11 | 66.6 |
| MS.gene33742.t1 | AT4G05020 | 41.745 | 321 | 175 | 7 | 105 | 417 | 57 | 373 | 3.70e-63 | 218 |
| MS.gene33742.t1 | AT2G20800 | 36.193 | 373 | 200 | 8 | 103 | 461 | 60 | 408 | 9.00e-57 | 200 |
| MS.gene33742.t1 | AT2G20800 | 37.500 | 120 | 66 | 3 | 428 | 543 | 468 | 582 | 1.33e-14 | 77.0 |
| MS.gene33742.t1 | AT5G08740 | 24.675 | 539 | 303 | 22 | 33 | 530 | 20 | 496 | 4.80e-19 | 90.9 |
Find 129 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTCTGTTCTTTAATTC+TGG | 0.169594 | 4.4:-23336146 | None:intergenic |
| GTAGAGTTGTTCAACAAAAT+TGG | 0.171502 | 4.4:+23338175 | MS.gene33742:CDS |
| TCTATAACTCTTTGTGTGTT+AGG | 0.192700 | 4.4:-23336217 | None:intergenic |
| GCTGCTTGTCGGTTTCTTAA+AGG | 0.225722 | 4.4:+23336343 | MS.gene33742:CDS |
| CATCACTCAAAACTATCTTT+TGG | 0.254195 | 4.4:-23337515 | None:intergenic |
| TAGATCAACAAGTGCCTTAT+AGG | 0.262816 | 4.4:-23338293 | None:intergenic |
| AGAAGATCAGGTGTTGCTTT+TGG | 0.283784 | 4.4:+23336028 | MS.gene33742:CDS |
| CCCTTGATACCAAAAGTTAA+AGG | 0.285822 | 4.4:-23336821 | None:intergenic |
| TTTCAGAAAGCATCAGATTA+AGG | 0.287447 | 4.4:-23336910 | None:intergenic |
| GTGTTGGTACCCTTGAATTC+AGG | 0.309821 | 4.4:+23336446 | MS.gene33742:CDS |
| GGAGCTGAGCCTTTAACTTT+TGG | 0.313907 | 4.4:+23336812 | MS.gene33742:CDS |
| TTCCTTATGGTCTCTTGGTT+TGG | 0.321151 | 4.4:+23337547 | MS.gene33742:CDS |
| GGTCTCTTGGTTTGGTCCAC+AGG | 0.327590 | 4.4:+23337555 | MS.gene33742:CDS |
| ATTCTGGAAATATACGAAAA+TGG | 0.331142 | 4.4:-23336130 | None:intergenic |
| CTGCTTGTCGGTTTCTTAAA+GGG | 0.336052 | 4.4:+23336344 | MS.gene33742:CDS |
| TGTATCATGCTCAAGAAATA+AGG | 0.343406 | 4.4:+23336876 | MS.gene33742:CDS |
| GCAAAGGGATTGTCACTTGC+TGG | 0.349729 | 4.4:+23338471 | MS.gene33742:CDS |
| TAGAGTTGTTCAACAAAATT+GGG | 0.356038 | 4.4:+23338176 | MS.gene33742:CDS |
| ACAATTTGTGTATAAACATA+TGG | 0.358161 | 4.4:+23338249 | MS.gene33742:CDS |
| CTGCTGCATTGTGTAGTTAT+TGG | 0.365839 | 4.4:+23337087 | MS.gene33742:CDS |
| CTATAACTCTTTGTGTGTTA+GGG | 0.367616 | 4.4:-23336216 | None:intergenic |
| TGTCATATGCAACTTTGAAT+TGG | 0.368204 | 4.4:-23336772 | None:intergenic |
| GGCATCAGTAGGTGCCTATA+AGG | 0.371076 | 4.4:+23338279 | MS.gene33742:CDS |
| TTCTTTCTAGCTTCCTGCAC+TGG | 0.393614 | 4.4:+23336529 | MS.gene33742:CDS |
| TGAAGTTCCTTATGGTCTCT+TGG | 0.393992 | 4.4:+23337542 | MS.gene33742:CDS |
| ATCTTACACGTGTGCTGAGC+TGG | 0.396198 | 4.4:+23338526 | MS.gene33742:CDS |
| GTCTGGAGTTTGTCTTATGC+GGG | 0.399394 | 4.4:+23337470 | MS.gene33742:intron |
| GTGTGCTGAGCTGGAGGAAT+AGG | 0.406321 | 4.4:+23338535 | MS.gene33742:CDS |
| ATGGGAAGGTAAGGAGCCTT+TGG | 0.406390 | 4.4:-23336098 | None:intergenic |
| GTACCGGTTGGGCTGCTTGT+CGG | 0.407943 | 4.4:+23336332 | MS.gene33742:CDS |
| TTTGCACTTGGGGATTGTGC+TGG | 0.420564 | 4.4:+23337777 | MS.gene33742:CDS |
| TTGGTTTGGTCCACAGGAGT+TGG | 0.429676 | 4.4:+23337561 | MS.gene33742:CDS |
| TCCTTACCTTCCCATGTAGA+TGG | 0.433038 | 4.4:+23336106 | MS.gene33742:CDS |
| TGATACAGAATTGGTGTTGA+TGG | 0.434223 | 4.4:+23337723 | MS.gene33742:intron |
| CTGAATCTTCCAAGCTCTCC+AGG | 0.437706 | 4.4:+23337606 | MS.gene33742:CDS |
| GTGGAAGATGTCTTTGCACT+TGG | 0.442231 | 4.4:+23337765 | MS.gene33742:CDS |
| GATGGAACTGAAGTTCCTTA+TGG | 0.446289 | 4.4:+23337534 | MS.gene33742:CDS |
| AACAAAATTGGGAAACAGAA+TGG | 0.446795 | 4.4:+23338187 | MS.gene33742:CDS |
| TACCTTCCACCTGGAGAGCT+TGG | 0.449786 | 4.4:-23337615 | None:intergenic |
| CAGCAACAGACCTGAATTCA+AGG | 0.450864 | 4.4:-23336456 | None:intergenic |
| TCTAGTCCTGCATATCTTGT+CGG | 0.452195 | 4.4:-23336268 | None:intergenic |
| AGAGTGGTTGTTCTCGGTAC+CGG | 0.453887 | 4.4:+23336316 | MS.gene33742:CDS |
| ACGAAAATGGTCCATCTACA+TGG | 0.454099 | 4.4:-23336117 | None:intergenic |
| GGTTGTTCTCGGTACCGGTT+GGG | 0.456139 | 4.4:+23336321 | MS.gene33742:CDS |
| AGCTAGAAAGAAGTATGAGT+TGG | 0.457476 | 4.4:-23336518 | None:intergenic |
| TGGAAGATGTCTTTGCACTT+GGG | 0.463774 | 4.4:+23337766 | MS.gene33742:CDS |
| GTTATTGGAGGTGGTCCTAC+AGG | 0.464952 | 4.4:+23337102 | MS.gene33742:CDS |
| TGAGCTAAAGCTGGAAGCAC+TGG | 0.467552 | 4.4:-23337822 | None:intergenic |
| CATATCACCAAGGAATCATA+TGG | 0.470079 | 4.4:+23336396 | MS.gene33742:CDS |
| AAACCGACAAGCAGCCCAAC+CGG | 0.471084 | 4.4:-23336335 | None:intergenic |
| AGAAGCAACCTGAGAAGATC+AGG | 0.472613 | 4.4:+23336016 | MS.gene33742:CDS |
| GCATCCTGTATTCTACCAAC+AGG | 0.478437 | 4.4:-23336481 | None:intergenic |
| GTGAAAACCATATGATTCCT+TGG | 0.479965 | 4.4:-23336403 | None:intergenic |
| AGTGCTTCCAGCTTTAGCTC+AGG | 0.480412 | 4.4:+23337824 | MS.gene33742:CDS |
| AAGCAACACCTGATCTTCTC+AGG | 0.480533 | 4.4:-23336024 | None:intergenic |
| TCTGCAGATGGCATCACACT+TGG | 0.481006 | 4.4:+23338223 | MS.gene33742:CDS |
| GACAAGCTTGTAATTGCAGC+TGG | 0.484313 | 4.4:+23336791 | MS.gene33742:CDS |
| TAACACACAAAGAGTTATAG+AGG | 0.487725 | 4.4:+23336219 | MS.gene33742:CDS |
| AAGCCTAGAGTGGTTGTTCT+CGG | 0.488864 | 4.4:+23336310 | MS.gene33742:CDS |
| GACCAAACCAAGAGACCATA+AGG | 0.496146 | 4.4:-23337549 | None:intergenic |
| TATGCAACTTTGAATTGGTA+AGG | 0.497896 | 4.4:-23336767 | None:intergenic |
| TGGTTGTTCTCGGTACCGGT+TGG | 0.498770 | 4.4:+23336320 | MS.gene33742:CDS |
| CAATTTGTGTATAAACATAT+GGG | 0.504254 | 4.4:+23338250 | MS.gene33742:CDS |
| GGAAGATGTCTTTGCACTTG+GGG | 0.505360 | 4.4:+23337767 | MS.gene33742:CDS |
| GTTTGTGTCAACTCCAGTGC+AGG | 0.507620 | 4.4:-23336542 | None:intergenic |
| TCTTATGCGGGGTGTGGTGA+AGG | 0.508837 | 4.4:+23337482 | MS.gene33742:CDS |
| CTGCATTGTGTAGTTATTGG+AGG | 0.508933 | 4.4:+23337090 | MS.gene33742:CDS |
| AGGCTAACCTGAGCTAAAGC+TGG | 0.509934 | 4.4:-23337831 | None:intergenic |
| GCTAGAAAGAAGTATGAGTT+GGG | 0.516821 | 4.4:-23336517 | None:intergenic |
| CCTACAGGAGTGGAATTTAG+TGG | 0.520988 | 4.4:+23337117 | MS.gene33742:CDS |
| CTCTTTAGATAATCCACCAT+TGG | 0.522845 | 4.4:-23336744 | None:intergenic |
| TCCATCTACATGGGAAGGTA+AGG | 0.529367 | 4.4:-23336107 | None:intergenic |
| CATTCATGTCACACTCATTG+AGG | 0.529894 | 4.4:+23337200 | MS.gene33742:CDS |
| ATACTTTCATCCTTTGACGT+TGG | 0.533948 | 4.4:+23337325 | MS.gene33742:CDS |
| CATTGTGTAGTTATTGGAGG+TGG | 0.534574 | 4.4:+23337093 | MS.gene33742:CDS |
| AGTCTGGAGTTTGTCTTATG+CGG | 0.535341 | 4.4:+23337469 | MS.gene33742:intron |
| CTGTCGAAGGCCAACGTCAA+AGG | 0.536614 | 4.4:-23337335 | None:intergenic |
| TGGAAGTAATGTACATGAGA+AGG | 0.538179 | 4.4:+23336048 | MS.gene33742:CDS |
| TTTGTGTGTTAGGGAGCTGA+TGG | 0.540218 | 4.4:-23336207 | None:intergenic |
| TCTTTGGCAGAGACAACAGC+AGG | 0.541549 | 4.4:+23338592 | MS.gene33742:CDS |
| ATAAGGCACTTGTTGATCTA+CGG | 0.542831 | 4.4:+23338296 | MS.gene33742:CDS |
| GGCAGAGACAACAGCAGGAT+AGG | 0.543946 | 4.4:+23338597 | MS.gene33742:CDS |
| CCACTAAATTCCACTCCTGT+AGG | 0.546000 | 4.4:-23337117 | None:intergenic |
| GGACTAGAGGCAACAAAACC+AGG | 0.554285 | 4.4:+23336283 | MS.gene33742:CDS |
| GTCTCTGCCAAAGACAAAAG+TGG | 0.556692 | 4.4:-23338583 | None:intergenic |
| GATGATCCGACAAGATATGC+AGG | 0.562686 | 4.4:+23336262 | MS.gene33742:CDS |
| AGGTCTGTTGCTGAGCCTGT+TGG | 0.569427 | 4.4:+23336466 | MS.gene33742:CDS |
| ACAGAATTGGTGTTGATGGA+TGG | 0.570983 | 4.4:+23337727 | MS.gene33742:intron |
| GTACCGAGAACAACCACTCT+AGG | 0.573776 | 4.4:-23336313 | None:intergenic |
| GGAAAGGCTTTGTCTGCAGA+TGG | 0.574116 | 4.4:+23338211 | MS.gene33742:CDS |
| TCTTATGTTATAGGATGCAA+AGG | 0.575813 | 4.4:+23338455 | MS.gene33742:intron |
| AATGGTCCATCTACATGGGA+AGG | 0.577054 | 4.4:-23336112 | None:intergenic |
| TTGTTGGCTTCAACATGTGT+TGG | 0.577991 | 4.4:+23336430 | MS.gene33742:CDS |
| CTGATGCTTTCTGAAAATCC+AGG | 0.580189 | 4.4:+23336917 | MS.gene33742:CDS |
| TGCGAGGCAGTTACCAATGG+TGG | 0.582363 | 4.4:+23336731 | MS.gene33742:CDS |
| TGAGCCTGTTGGTAGAATAC+AGG | 0.585959 | 4.4:+23336477 | MS.gene33742:CDS |
| GGCTTCACATACCTTCCACC+TGG | 0.586382 | 4.4:-23337624 | None:intergenic |
| TTCCAAGCTCTCCAGGTGGA+AGG | 0.587295 | 4.4:+23337613 | MS.gene33742:CDS |
| GAGAGAACATTTACAACCAA+AGG | 0.588960 | 4.4:+23336082 | MS.gene33742:CDS |
| AGTTTGTCTTATGCGGGGTG+TGG | 0.589261 | 4.4:+23337476 | MS.gene33742:CDS |
| TACTGCGAGGCAGTTACCAA+TGG | 0.597374 | 4.4:+23336728 | MS.gene33742:CDS |
| CTTATGTTATAGGATGCAAA+GGG | 0.602916 | 4.4:+23338456 | MS.gene33742:intron |
| TGTTGATCTACGGCAATCCA+AGG | 0.602932 | 4.4:+23338306 | MS.gene33742:CDS |
| TGGGAAACAGAATGGAGGAA+AGG | 0.603382 | 4.4:+23338195 | MS.gene33742:CDS |
| ATGGGGAGCATGGCATCAGT+AGG | 0.604143 | 4.4:+23338268 | MS.gene33742:CDS |
| GTATAAACATATGGGGAGCA+TGG | 0.604718 | 4.4:+23338258 | MS.gene33742:CDS |
| AATACAGGATGCACTAGCAA+AGG | 0.606941 | 4.4:+23336492 | MS.gene33742:CDS |
| ATGGATGCGTGTTCCGTCTG+TGG | 0.610196 | 4.4:+23337746 | MS.gene33742:CDS |
| CTATAACAATGGCATTAGCA+AGG | 0.610697 | 4.4:+23335987 | None:intergenic |
| CTCAGAGGGACCAACTCCTG+TGG | 0.615481 | 4.4:-23337571 | None:intergenic |
| CGAAAATGGTCCATCTACAT+GGG | 0.615536 | 4.4:-23336116 | None:intergenic |
| TATGCGGGGTGTGGTGAAGG+AGG | 0.616063 | 4.4:+23337485 | MS.gene33742:CDS |
| GACAAGATATGCAGGACTAG+AGG | 0.619013 | 4.4:+23336270 | MS.gene33742:CDS |
| TGGAGGTGGTCCTACAGGAG+TGG | 0.621881 | 4.4:+23337107 | MS.gene33742:CDS |
| GCTTCGTTGCATACTGTCGA+AGG | 0.629576 | 4.4:-23337348 | None:intergenic |
| GCAAAGACATCTTCCACAGA+CGG | 0.636642 | 4.4:-23337759 | None:intergenic |
| TTACACGTGTGCTGAGCTGG+AGG | 0.642106 | 4.4:+23338529 | MS.gene33742:CDS |
| TCTGGAGTTTGTCTTATGCG+GGG | 0.644473 | 4.4:+23337471 | MS.gene33742:CDS |
| AGCAACAGACCTGAATTCAA+GGG | 0.646467 | 4.4:-23336455 | None:intergenic |
| ACCAGGTGAAAAGCCTAGAG+TGG | 0.649954 | 4.4:+23336300 | MS.gene33742:CDS |
| TGACAGGTTGCTGAAAGACA+AGG | 0.650294 | 4.4:+23338142 | MS.gene33742:intron |
| ACACATGTTGAAGCCAACAA+AGG | 0.657554 | 4.4:-23336427 | None:intergenic |
| AAAATTGGGAAACAGAATGG+AGG | 0.666719 | 4.4:+23338190 | MS.gene33742:CDS |
| AATTTGTGTATAAACATATG+GGG | 0.676076 | 4.4:+23338251 | MS.gene33742:CDS |
| TGCAACGAAGCACTTAACAA+AGG | 0.676652 | 4.4:+23337360 | MS.gene33742:CDS |
| AATCTTCCAAGCTCTCCAGG+TGG | 0.690106 | 4.4:+23337609 | MS.gene33742:CDS |
| CAGCACACGTGTAAGATATG+CGG | 0.691917 | 4.4:-23338520 | None:intergenic |
| ATGTCAACAGGTCTACTGCG+AGG | 0.733020 | 4.4:+23336715 | MS.gene33742:intron |
| ATGTTGTGTGCATATCACCA+AGG | 0.767641 | 4.4:+23336386 | MS.gene33742:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTAAATTTTAATATC+TGG | - | chr4.4:23337648-23337667 | None:intergenic | 10.0% |
| !!! | ATTTGTTATAATAATTATGC+AGG | + | chr4.4:23336980-23336999 | MS.gene33742:intron | 15.0% |
| !! | AAGACAATATAGATAAATGT+CGG | - | chr4.4:23337927-23337946 | None:intergenic | 20.0% |
| !! | AATGTAAAAAATTCCAATAG+AGG | + | chr4.4:23337954-23337973 | MS.gene33742:intron | 20.0% |
| !! | AATTATGAAAAGTTAAACAG+TGG | - | chr4.4:23337294-23337313 | None:intergenic | 20.0% |
| !! | AATTTGTGTATAAACATATG+GGG | + | chr4.4:23338251-23338270 | MS.gene33742:CDS | 20.0% |
| !! | ACAATTTGTGTATAAACATA+TGG | + | chr4.4:23338249-23338268 | MS.gene33742:CDS | 20.0% |
| !! | ATGTAAAAAATTCCAATAGA+GGG | + | chr4.4:23337955-23337974 | MS.gene33742:intron | 20.0% |
| !! | CAAAATGTATCTTATGTTAT+AGG | + | chr4.4:23338446-23338465 | MS.gene33742:intron | 20.0% |
| !! | CAATTTGTGTATAAACATAT+GGG | + | chr4.4:23338250-23338269 | MS.gene33742:CDS | 20.0% |
| !!! | AAAATGTTTTTCATTATGAC+AGG | + | chr4.4:23337039-23337058 | MS.gene33742:intron | 20.0% |
| !!! | AGTATAGTTTTTCTAAAAGA+AGG | - | chr4.4:23336595-23336614 | None:intergenic | 20.0% |
| !!! | CTGTTTAACTTTTCATAATT+AGG | + | chr4.4:23337294-23337313 | MS.gene33742:intron | 20.0% |
| !!! | GTATAGTTTTTCTAAAAGAA+GGG | - | chr4.4:23336594-23336613 | None:intergenic | 20.0% |
| !!! | TCTATTGGAATTTTTTACAT+TGG | - | chr4.4:23337955-23337974 | None:intergenic | 20.0% |
| ! | CAAAACATCATAAGACAATA+AGG | - | chr4.4:23337854-23337873 | None:intergenic | 25.0% |
| ! | GAAAAACTATACTGTTACAA+TGG | + | chr4.4:23336602-23336621 | MS.gene33742:intron | 25.0% |
| ! | GCTTAAAACTAAACTAAGTA+TGG | - | chr4.4:23336957-23336976 | None:intergenic | 25.0% |
| ! | GTTATAATAATTATGCAGGT+GGG | + | chr4.4:23336984-23337003 | MS.gene33742:intron | 25.0% |
| ! | TAGAGTTGTTCAACAAAATT+GGG | + | chr4.4:23338176-23338195 | MS.gene33742:CDS | 25.0% |
| ! | TGTTATAATAATTATGCAGG+TGG | + | chr4.4:23336983-23337002 | MS.gene33742:intron | 25.0% |
| !! | ATCACTCAAAACTATCTTTT+GGG | - | chr4.4:23337517-23337536 | None:intergenic | 25.0% |
| !! | ATTCAATTTTTGTATCAGTC+TGG | + | chr4.4:23337453-23337472 | MS.gene33742:intron | 25.0% |
| !! | ATTCTGGAAATATACGAAAA+TGG | - | chr4.4:23336133-23336152 | None:intergenic | 25.0% |
| !!! | GTCATTATTTTTTTTGCCAA+AGG | + | chr4.4:23337008-23337027 | MS.gene33742:intron | 25.0% |
| AACAAAATTGGGAAACAGAA+TGG | + | chr4.4:23338187-23338206 | MS.gene33742:CDS | 30.0% | |
| ATGCATAGTACTACAGAAAT+AGG | + | chr4.4:23338021-23338040 | MS.gene33742:intron | 30.0% | |
| CTAATGTCTAATTTACACTC+TGG | + | chr4.4:23338363-23338382 | MS.gene33742:intron | 30.0% | |
| CTATAACTCTTTGTGTGTTA+GGG | - | chr4.4:23336219-23336238 | None:intergenic | 30.0% | |
| CTTATGTTATAGGATGCAAA+GGG | + | chr4.4:23338456-23338475 | MS.gene33742:intron | 30.0% | |
| GACATGTAATCATTGAAGAT+TGG | - | chr4.4:23337416-23337435 | None:intergenic | 30.0% | |
| GTAGAGTTGTTCAACAAAAT+TGG | + | chr4.4:23338175-23338194 | MS.gene33742:CDS | 30.0% | |
| GTTGTTCTGTTCTTTAATTC+TGG | - | chr4.4:23336149-23336168 | None:intergenic | 30.0% | |
| GTTGTTGAATGATACAGAAT+TGG | + | chr4.4:23337714-23337733 | MS.gene33742:intron | 30.0% | |
| TAACACACAAAGAGTTATAG+AGG | + | chr4.4:23336219-23336238 | MS.gene33742:CDS | 30.0% | |
| TATGCAACTTTGAATTGGTA+AGG | - | chr4.4:23336770-23336789 | None:intergenic | 30.0% | |
| TCTATAACTCTTTGTGTGTT+AGG | - | chr4.4:23336220-23336239 | None:intergenic | 30.0% | |
| TCTTATGTTATAGGATGCAA+AGG | + | chr4.4:23338455-23338474 | MS.gene33742:intron | 30.0% | |
| TGTATCATGCTCAAGAAATA+AGG | + | chr4.4:23336876-23336895 | MS.gene33742:CDS | 30.0% | |
| TGTCATATGCAACTTTGAAT+TGG | - | chr4.4:23336775-23336794 | None:intergenic | 30.0% | |
| ! | CAATTTTACTTCATGTCAAC+AGG | + | chr4.4:23336703-23336722 | MS.gene33742:intron | 30.0% |
| ! | CATCACTCAAAACTATCTTT+TGG | - | chr4.4:23337518-23337537 | None:intergenic | 30.0% |
| ! | TCACTCAAAACTATCTTTTG+GGG | - | chr4.4:23337516-23337535 | None:intergenic | 30.0% |
| ! | TGATGTTTTGTCAGTACATA+TGG | + | chr4.4:23337864-23337883 | MS.gene33742:intron | 30.0% |
| ! | TTTTGTTGAACAACTCTACA+AGG | - | chr4.4:23338174-23338193 | None:intergenic | 30.0% |
| !! | AACATGAATTTTTCGAAGAG+GGG | + | chr4.4:23336166-23336185 | MS.gene33742:CDS | 30.0% |
| !! | ACAACATGAATTTTTCGAAG+AGG | + | chr4.4:23336164-23336183 | MS.gene33742:CDS | 30.0% |
| !! | CAACATGAATTTTTCGAAGA+GGG | + | chr4.4:23336165-23336184 | MS.gene33742:CDS | 30.0% |
| !! | CCTTTAACTTTTGGTATCAA+GGG | + | chr4.4:23336821-23336840 | MS.gene33742:CDS | 30.0% |
| !! | TTTCAGAAAGCATCAGATTA+AGG | - | chr4.4:23336913-23336932 | None:intergenic | 30.0% |
| !!! | AGTTTTTTGACAAACTCAGA+GGG | - | chr4.4:23337588-23337607 | None:intergenic | 30.0% |
| !!! | CAAAAGATAGTTTTGAGTGA+TGG | + | chr4.4:23337516-23337535 | MS.gene33742:CDS | 30.0% |
| AAAATTGGGAAACAGAATGG+AGG | + | chr4.4:23338190-23338209 | MS.gene33742:CDS | 35.0% | |
| ATACGCGATCTAAACACAAA+AGG | - | chr4.4:23337390-23337409 | None:intergenic | 35.0% | |
| ATACTTTCATCCTTTGACGT+TGG | + | chr4.4:23337325-23337344 | MS.gene33742:CDS | 35.0% | |
| CATATCACCAAGGAATCATA+TGG | + | chr4.4:23336396-23336415 | MS.gene33742:CDS | 35.0% | |
| CCCTTGATACCAAAAGTTAA+AGG | - | chr4.4:23336824-23336843 | None:intergenic | 35.0% | |
| CTCTTTAGATAATCCACCAT+TGG | - | chr4.4:23336747-23336766 | None:intergenic | 35.0% | |
| GAAACTTTCCCATTATACCT+TGG | - | chr4.4:23338326-23338345 | None:intergenic | 35.0% | |
| GAGAGAACATTTACAACCAA+AGG | + | chr4.4:23336082-23336101 | MS.gene33742:CDS | 35.0% | |
| GTGAAAACCATATGATTCCT+TGG | - | chr4.4:23336406-23336425 | None:intergenic | 35.0% | |
| TAGATCAACAAGTGCCTTAT+AGG | - | chr4.4:23338296-23338315 | None:intergenic | 35.0% | |
| TGGAAGTAATGTACATGAGA+AGG | + | chr4.4:23336048-23336067 | MS.gene33742:CDS | 35.0% | |
| ! | AGCTAGAAAGAAGTATGAGT+TGG | - | chr4.4:23336521-23336540 | None:intergenic | 35.0% |
| ! | ATAAGGCACTTGTTGATCTA+CGG | + | chr4.4:23338296-23338315 | MS.gene33742:CDS | 35.0% |
| ! | GCTAGAAAGAAGTATGAGTT+GGG | - | chr4.4:23336520-23336539 | None:intergenic | 35.0% |
| ! | GTTTTACGTGGCAGTAAATT+GGG | + | chr4.4:23338557-23338576 | MS.gene33742:CDS | 35.0% |
| ! | GTTTTCTTGAACAAACTGGA+AGG | + | chr4.4:23337799-23337818 | MS.gene33742:CDS | 35.0% |
| ! | TATGGTTTTCACTCCTTTGT+TGG | + | chr4.4:23336414-23336433 | MS.gene33742:CDS | 35.0% |
| ! | TTTTACGTGGCAGTAAATTG+GGG | + | chr4.4:23338558-23338577 | MS.gene33742:CDS | 35.0% |
| ! | TTTTGGTATCAAGGGAGTAA+AGG | + | chr4.4:23336829-23336848 | MS.gene33742:CDS | 35.0% |
| !! | AACATTTTCAGCTTAGCCTT+TGG | - | chr4.4:23337027-23337046 | None:intergenic | 35.0% |
| !! | ATGTCGGCTTAACTTTGTTT+AGG | - | chr4.4:23337911-23337930 | None:intergenic | 35.0% |
| !! | GCCTTTAACTTTTGGTATCA+AGG | + | chr4.4:23336820-23336839 | MS.gene33742:CDS | 35.0% |
| !! | TGATACAGAATTGGTGTTGA+TGG | + | chr4.4:23337723-23337742 | MS.gene33742:intron | 35.0% |
| !!! | CAGTTTTTTGACAAACTCAG+AGG | - | chr4.4:23337589-23337608 | None:intergenic | 35.0% |
| AATACAGGATGCACTAGCAA+AGG | + | chr4.4:23336492-23336511 | MS.gene33742:CDS | 40.0% | |
| ACACATGTTGAAGCCAACAA+AGG | - | chr4.4:23336430-23336449 | None:intergenic | 40.0% | |
| ACGAAAATGGTCCATCTACA+TGG | - | chr4.4:23336120-23336139 | None:intergenic | 40.0% | |
| ACGGCAATCCAAGGTATAAT+GGG | + | chr4.4:23338315-23338334 | MS.gene33742:intron | 40.0% | |
| AGCAACAGACCTGAATTCAA+GGG | - | chr4.4:23336458-23336477 | None:intergenic | 40.0% | |
| ATGTTGTGTGCATATCACCA+AGG | + | chr4.4:23336386-23336405 | MS.gene33742:CDS | 40.0% | |
| CATTCATGTCACACTCATTG+AGG | + | chr4.4:23337200-23337219 | MS.gene33742:CDS | 40.0% | |
| CATTGTGTAGTTATTGGAGG+TGG | + | chr4.4:23337093-23337112 | MS.gene33742:CDS | 40.0% | |
| CGAAAATGGTCCATCTACAT+GGG | - | chr4.4:23336119-23336138 | None:intergenic | 40.0% | |
| CTGCATTGTGTAGTTATTGG+AGG | + | chr4.4:23337090-23337109 | MS.gene33742:CDS | 40.0% | |
| CTGCTGCATTGTGTAGTTAT+TGG | + | chr4.4:23337087-23337106 | MS.gene33742:CDS | 40.0% | |
| GAGTATACTTTCCTATGCAC+TGG | + | chr4.4:23338115-23338134 | MS.gene33742:intron | 40.0% | |
| GATGGAACTGAAGTTCCTTA+TGG | + | chr4.4:23337534-23337553 | MS.gene33742:CDS | 40.0% | |
| GTATAAACATATGGGGAGCA+TGG | + | chr4.4:23338258-23338277 | MS.gene33742:CDS | 40.0% | |
| TACGGCAATCCAAGGTATAA+TGG | + | chr4.4:23338314-23338333 | MS.gene33742:intron | 40.0% | |
| TCTAGTCCTGCATATCTTGT+CGG | - | chr4.4:23336271-23336290 | None:intergenic | 40.0% | |
| TGAAGTTCCTTATGGTCTCT+TGG | + | chr4.4:23337542-23337561 | MS.gene33742:CDS | 40.0% | |
| TGGAAGATGTCTTTGCACTT+GGG | + | chr4.4:23337766-23337785 | MS.gene33742:CDS | 40.0% | |
| TTCCTTATGGTCTCTTGGTT+TGG | + | chr4.4:23337547-23337566 | MS.gene33742:CDS | 40.0% | |
| ! | AGTCTGGAGTTTGTCTTATG+CGG | + | chr4.4:23337469-23337488 | MS.gene33742:intron | 40.0% |
| ! | ATGCTTTCTGAAAATCCAGG+TGG | + | chr4.4:23336920-23336939 | MS.gene33742:intron | 40.0% |
| ! | CTGATGCTTTCTGAAAATCC+AGG | + | chr4.4:23336917-23336936 | MS.gene33742:CDS | 40.0% |
| ! | GGTTTTACGTGGCAGTAAAT+TGG | + | chr4.4:23338556-23338575 | MS.gene33742:CDS | 40.0% |
| ! | TGCAACGAAGCACTTAACAA+AGG | + | chr4.4:23337360-23337379 | MS.gene33742:CDS | 40.0% |
| ! | TGCTTTCTGAAAATCCAGGT+GGG | + | chr4.4:23336921-23336940 | MS.gene33742:intron | 40.0% |
| ! | TTTTCGAAGAGGGGAATAAC+AGG | + | chr4.4:23336175-23336194 | MS.gene33742:CDS | 40.0% |
| !! | ACAGAATTGGTGTTGATGGA+TGG | + | chr4.4:23337727-23337746 | MS.gene33742:intron | 40.0% |
| !! | CTGCTTGTCGGTTTCTTAAA+GGG | + | chr4.4:23336344-23336363 | MS.gene33742:CDS | 40.0% |
| !! | TTGTTGGCTTCAACATGTGT+TGG | + | chr4.4:23336430-23336449 | MS.gene33742:CDS | 40.0% |
| !!! | AGAAGATCAGGTGTTGCTTT+TGG | + | chr4.4:23336028-23336047 | MS.gene33742:CDS | 40.0% |
| !!! | GCTGGTTTTCTTGAACAAAC+TGG | + | chr4.4:23337795-23337814 | MS.gene33742:CDS | 40.0% |
| AAGCAACACCTGATCTTCTC+AGG | - | chr4.4:23336027-23336046 | None:intergenic | 45.0% | |
| AAGCCTAGAGTGGTTGTTCT+CGG | + | chr4.4:23336310-23336329 | MS.gene33742:CDS | 45.0% | |
| AATGGTCCATCTACATGGGA+AGG | - | chr4.4:23336115-23336134 | None:intergenic | 45.0% | |
| AGAAGCAACCTGAGAAGATC+AGG | + | chr4.4:23336016-23336035 | MS.gene33742:CDS | 45.0% | |
| ATGGATATGAAACACCCACC+TGG | - | chr4.4:23336938-23336957 | None:intergenic | 45.0% | |
| CAGCAACAGACCTGAATTCA+AGG | - | chr4.4:23336459-23336478 | None:intergenic | 45.0% | |
| CAGCACACGTGTAAGATATG+CGG | - | chr4.4:23338523-23338542 | None:intergenic | 45.0% | |
| CCACTAAATTCCACTCCTGT+AGG | - | chr4.4:23337120-23337139 | None:intergenic | 45.0% | |
| CCTACAGGAGTGGAATTTAG+TGG | + | chr4.4:23337117-23337136 | MS.gene33742:CDS | 45.0% | |
| GACAAGATATGCAGGACTAG+AGG | + | chr4.4:23336270-23336289 | MS.gene33742:CDS | 45.0% | |
| GACAAGCTTGTAATTGCAGC+TGG | + | chr4.4:23336791-23336810 | MS.gene33742:CDS | 45.0% | |
| GACCAAACCAAGAGACCATA+AGG | - | chr4.4:23337552-23337571 | None:intergenic | 45.0% | |
| GATGATCCGACAAGATATGC+AGG | + | chr4.4:23336262-23336281 | MS.gene33742:CDS | 45.0% | |
| GCAAAGACATCTTCCACAGA+CGG | - | chr4.4:23337762-23337781 | None:intergenic | 45.0% | |
| GCATCCTGTATTCTACCAAC+AGG | - | chr4.4:23336484-23336503 | None:intergenic | 45.0% | |
| GGAAGATGTCTTTGCACTTG+GGG | + | chr4.4:23337767-23337786 | MS.gene33742:CDS | 45.0% | |
| GTCTCTGCCAAAGACAAAAG+TGG | - | chr4.4:23338586-23338605 | None:intergenic | 45.0% | |
| GTGGAAGATGTCTTTGCACT+TGG | + | chr4.4:23337765-23337784 | MS.gene33742:CDS | 45.0% | |
| TCCATCTACATGGGAAGGTA+AGG | - | chr4.4:23336110-23336129 | None:intergenic | 45.0% | |
| TCCTTACCTTCCCATGTAGA+TGG | + | chr4.4:23336106-23336125 | MS.gene33742:CDS | 45.0% | |
| TGACAGGTTGCTGAAAGACA+AGG | + | chr4.4:23338142-23338161 | MS.gene33742:intron | 45.0% | |
| TGGGAAACAGAATGGAGGAA+AGG | + | chr4.4:23338195-23338214 | MS.gene33742:CDS | 45.0% | |
| TGTTGATCTACGGCAATCCA+AGG | + | chr4.4:23338306-23338325 | MS.gene33742:CDS | 45.0% | |
| TTTGTGTGTTAGGGAGCTGA+TGG | - | chr4.4:23336210-23336229 | None:intergenic | 45.0% | |
| ! | CTGGAGGAATAGGTTTTACG+TGG | + | chr4.4:23338545-23338564 | MS.gene33742:CDS | 45.0% |
| ! | GTCTGGAGTTTGTCTTATGC+GGG | + | chr4.4:23337470-23337489 | MS.gene33742:intron | 45.0% |
| ! | GTGTTGGTACCCTTGAATTC+AGG | + | chr4.4:23336446-23336465 | MS.gene33742:CDS | 45.0% |
| ! | GTTTTGTCAGCTGGCTGATA+TGG | + | chr4.4:23338493-23338512 | MS.gene33742:CDS | 45.0% |
| ! | TCTGGAGTTTGTCTTATGCG+GGG | + | chr4.4:23337471-23337490 | MS.gene33742:CDS | 45.0% |
| ! | TGAGCCTGTTGGTAGAATAC+AGG | + | chr4.4:23336477-23336496 | MS.gene33742:CDS | 45.0% |
| !! | GCTGCTTGTCGGTTTCTTAA+AGG | + | chr4.4:23336343-23336362 | MS.gene33742:CDS | 45.0% |
| !! | GGAGCTGAGCCTTTAACTTT+TGG | + | chr4.4:23336812-23336831 | MS.gene33742:CDS | 45.0% |
| !! | TCCAATAGAGGGTACTTGAC+AGG | + | chr4.4:23337966-23337985 | MS.gene33742:intron | 45.0% |
| !! | TGGGGAACCACTTTTGTCTT+TGG | + | chr4.4:23338576-23338595 | MS.gene33742:CDS | 45.0% |
| !! | TTCTTTCTAGCTTCCTGCAC+TGG | + | chr4.4:23336529-23336548 | MS.gene33742:CDS | 45.0% |
| AATCTTCCAAGCTCTCCAGG+TGG | + | chr4.4:23337609-23337628 | MS.gene33742:CDS | 50.0% | |
| ACCAGGTGAAAAGCCTAGAG+TGG | + | chr4.4:23336300-23336319 | MS.gene33742:CDS | 50.0% | |
| AGAGTGGTTGTTCTCGGTAC+CGG | + | chr4.4:23336316-23336335 | MS.gene33742:CDS | 50.0% | |
| AGGCTAACCTGAGCTAAAGC+TGG | - | chr4.4:23337834-23337853 | None:intergenic | 50.0% | |
| AGTTTGTCTTATGCGGGGTG+TGG | + | chr4.4:23337476-23337495 | MS.gene33742:CDS | 50.0% | |
| ATCTTACACGTGTGCTGAGC+TGG | + | chr4.4:23338526-23338545 | MS.gene33742:CDS | 50.0% | |
| ATGGGAAGGTAAGGAGCCTT+TGG | - | chr4.4:23336101-23336120 | None:intergenic | 50.0% | |
| ATGTCAACAGGTCTACTGCG+AGG | + | chr4.4:23336715-23336734 | MS.gene33742:intron | 50.0% | |
| CTGAATCTTCCAAGCTCTCC+AGG | + | chr4.4:23337606-23337625 | MS.gene33742:CDS | 50.0% | |
| GCCTGTCAAGTACCCTCTAT+TGG | - | chr4.4:23337970-23337989 | None:intergenic | 50.0% | |
| GCTTCGTTGCATACTGTCGA+AGG | - | chr4.4:23337351-23337370 | None:intergenic | 50.0% | |
| GGACTAGAGGCAACAAAACC+AGG | + | chr4.4:23336283-23336302 | MS.gene33742:CDS | 50.0% | |
| GGCATCAGTAGGTGCCTATA+AGG | + | chr4.4:23338279-23338298 | MS.gene33742:CDS | 50.0% | |
| GTACCGAGAACAACCACTCT+AGG | - | chr4.4:23336316-23336335 | None:intergenic | 50.0% | |
| GTTATTGGAGGTGGTCCTAC+AGG | + | chr4.4:23337102-23337121 | MS.gene33742:CDS | 50.0% | |
| GTTTGTGTCAACTCCAGTGC+AGG | - | chr4.4:23336545-23336564 | None:intergenic | 50.0% | |
| TACTGCGAGGCAGTTACCAA+TGG | + | chr4.4:23336728-23336747 | MS.gene33742:CDS | 50.0% | |
| TCTGCAGATGGCATCACACT+TGG | + | chr4.4:23338223-23338242 | MS.gene33742:CDS | 50.0% | |
| TCTTTGGCAGAGACAACAGC+AGG | + | chr4.4:23338592-23338611 | MS.gene33742:CDS | 50.0% | |
| TTTGCACTTGGGGATTGTGC+TGG | + | chr4.4:23337777-23337796 | MS.gene33742:CDS | 50.0% | |
| ! | ACCACTCTAGGCTTTTCACC+TGG | - | chr4.4:23336304-23336323 | None:intergenic | 50.0% |
| ! | AGTGCTTCCAGCTTTAGCTC+AGG | + | chr4.4:23337824-23337843 | MS.gene33742:CDS | 50.0% |
| ! | GCAAAGGGATTGTCACTTGC+TGG | + | chr4.4:23338471-23338490 | MS.gene33742:CDS | 50.0% |
| ! | GGAAAGGCTTTGTCTGCAGA+TGG | + | chr4.4:23338211-23338230 | MS.gene33742:CDS | 50.0% |
| ! | TGAGCTAAAGCTGGAAGCAC+TGG | - | chr4.4:23337825-23337844 | None:intergenic | 50.0% |
| !! | TTGGTTTGGTCCACAGGAGT+TGG | + | chr4.4:23337561-23337580 | MS.gene33742:CDS | 50.0% |
| !!! | CACTTGCTGGTTTTGTCAGC+TGG | + | chr4.4:23338484-23338503 | MS.gene33742:CDS | 50.0% |
| AAACCGACAAGCAGCCCAAC+CGG | - | chr4.4:23336338-23336357 | None:intergenic | 55.0% | |
| AGGTCTGTTGCTGAGCCTGT+TGG | + | chr4.4:23336466-23336485 | MS.gene33742:CDS | 55.0% | |
| ATGGATGCGTGTTCCGTCTG+TGG | + | chr4.4:23337746-23337765 | MS.gene33742:CDS | 55.0% | |
| CCTGTCAGTGACCAGTGCAT+AGG | - | chr4.4:23338129-23338148 | None:intergenic | 55.0% | |
| CTGTCGAAGGCCAACGTCAA+AGG | - | chr4.4:23337338-23337357 | None:intergenic | 55.0% | |
| GGCAGAGACAACAGCAGGAT+AGG | + | chr4.4:23338597-23338616 | MS.gene33742:CDS | 55.0% | |
| GGCTTCACATACCTTCCACC+TGG | - | chr4.4:23337627-23337646 | None:intergenic | 55.0% | |
| GTGTGCTGAGCTGGAGGAAT+AGG | + | chr4.4:23338535-23338554 | MS.gene33742:CDS | 55.0% | |
| TACCTTCCACCTGGAGAGCT+TGG | - | chr4.4:23337618-23337637 | None:intergenic | 55.0% | |
| TCTTATGCGGGGTGTGGTGA+AGG | + | chr4.4:23337482-23337501 | MS.gene33742:CDS | 55.0% | |
| TGCGAGGCAGTTACCAATGG+TGG | + | chr4.4:23336731-23336750 | MS.gene33742:CDS | 55.0% | |
| TTACACGTGTGCTGAGCTGG+AGG | + | chr4.4:23338529-23338548 | MS.gene33742:CDS | 55.0% | |
| TTCCAAGCTCTCCAGGTGGA+AGG | + | chr4.4:23337613-23337632 | MS.gene33742:CDS | 55.0% | |
| ! | ATGGGGAGCATGGCATCAGT+AGG | + | chr4.4:23338268-23338287 | MS.gene33742:CDS | 55.0% |
| ! | CCTATGCACTGGTCACTGAC+AGG | + | chr4.4:23338126-23338145 | MS.gene33742:intron | 55.0% |
| !! | GGTCTCTTGGTTTGGTCCAC+AGG | + | chr4.4:23337555-23337574 | MS.gene33742:CDS | 55.0% |
| !! | GGTTGTTCTCGGTACCGGTT+GGG | + | chr4.4:23336321-23336340 | MS.gene33742:CDS | 55.0% |
| !! | TGGTTGTTCTCGGTACCGGT+TGG | + | chr4.4:23336320-23336339 | MS.gene33742:CDS | 55.0% |
| CTCAGAGGGACCAACTCCTG+TGG | - | chr4.4:23337574-23337593 | None:intergenic | 60.0% | |
| TATGCGGGGTGTGGTGAAGG+AGG | + | chr4.4:23337485-23337504 | MS.gene33742:CDS | 60.0% | |
| TGGAGGTGGTCCTACAGGAG+TGG | + | chr4.4:23337107-23337126 | MS.gene33742:CDS | 60.0% | |
| !! | GTACCGGTTGGGCTGCTTGT+CGG | + | chr4.4:23336332-23336351 | MS.gene33742:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 23335995 | 23338623 | 23335995 | ID=MS.gene33742 |
| chr4.4 | mRNA | 23335995 | 23338623 | 23335995 | ID=MS.gene33742.t1;Parent=MS.gene33742 |
| chr4.4 | exon | 23335995 | 23336573 | 23335995 | ID=MS.gene33742.t1.exon1;Parent=MS.gene33742.t1 |
| chr4.4 | CDS | 23335995 | 23336573 | 23335995 | ID=cds.MS.gene33742.t1;Parent=MS.gene33742.t1 |
| chr4.4 | exon | 23336725 | 23336938 | 23336725 | ID=MS.gene33742.t1.exon2;Parent=MS.gene33742.t1 |
| chr4.4 | CDS | 23336725 | 23336938 | 23336725 | ID=cds.MS.gene33742.t1;Parent=MS.gene33742.t1 |
| chr4.4 | exon | 23337061 | 23337221 | 23337061 | ID=MS.gene33742.t1.exon3;Parent=MS.gene33742.t1 |
| chr4.4 | CDS | 23337061 | 23337221 | 23337061 | ID=cds.MS.gene33742.t1;Parent=MS.gene33742.t1 |
| chr4.4 | exon | 23337316 | 23337381 | 23337316 | ID=MS.gene33742.t1.exon4;Parent=MS.gene33742.t1 |
| chr4.4 | CDS | 23337316 | 23337381 | 23337316 | ID=cds.MS.gene33742.t1;Parent=MS.gene33742.t1 |
| chr4.4 | exon | 23337471 | 23337634 | 23337471 | ID=MS.gene33742.t1.exon5;Parent=MS.gene33742.t1 |
| chr4.4 | CDS | 23337471 | 23337634 | 23337471 | ID=cds.MS.gene33742.t1;Parent=MS.gene33742.t1 |
| chr4.4 | exon | 23337731 | 23337845 | 23337731 | ID=MS.gene33742.t1.exon6;Parent=MS.gene33742.t1 |
| chr4.4 | CDS | 23337731 | 23337845 | 23337731 | ID=cds.MS.gene33742.t1;Parent=MS.gene33742.t1 |
| chr4.4 | exon | 23338148 | 23338327 | 23338148 | ID=MS.gene33742.t1.exon7;Parent=MS.gene33742.t1 |
| chr4.4 | CDS | 23338148 | 23338327 | 23338148 | ID=cds.MS.gene33742.t1;Parent=MS.gene33742.t1 |
| chr4.4 | exon | 23338468 | 23338623 | 23338468 | ID=MS.gene33742.t1.exon8;Parent=MS.gene33742.t1 |
| chr4.4 | CDS | 23338468 | 23338623 | 23338468 | ID=cds.MS.gene33742.t1;Parent=MS.gene33742.t1 |
| Gene Sequence |
| Protein sequence |
