Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34457.t1 | XP_003592304.1 | 93.1 | 291 | 20 | 0 | 1 | 291 | 1 | 291 | 4.70E-156 | 560.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34457.t1 | Q9LEX0 | 58.5 | 282 | 113 | 2 | 1 | 281 | 1 | 279 | 3.5e-99 | 362.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34457.t1 | G7IAQ2 | 93.1 | 291 | 20 | 0 | 1 | 291 | 1 | 291 | 3.4e-156 | 560.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015544 | MS.gene34457 | PPI |
| MS.gene34457 | MS.gene033388 | PPI |
| MS.gene22617 | MS.gene34457 | PPI |
| MS.gene34457 | MS.gene72988 | PPI |
| MS.gene34457 | MS.gene072814 | PPI |
| MS.gene34457 | MS.gene011426 | PPI |
| MS.gene34457 | MS.gene20125 | PPI |
| MS.gene34457 | MS.gene015546 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34457.t1 | MTR_1g101390 | 94.845 | 291 | 15 | 0 | 1 | 291 | 1 | 291 | 0.0 | 547 |
| MS.gene34457.t1 | MTR_0113s0040 | 72.792 | 283 | 77 | 0 | 9 | 291 | 3 | 285 | 2.73e-157 | 440 |
| MS.gene34457.t1 | MTR_0002s0020 | 58.803 | 284 | 106 | 3 | 1 | 279 | 1 | 278 | 2.43e-122 | 352 |
| MS.gene34457.t1 | MTR_4g102770 | 61.154 | 260 | 100 | 1 | 28 | 286 | 19 | 278 | 2.31e-118 | 341 |
| MS.gene34457.t1 | MTR_5g010800 | 55.762 | 269 | 115 | 3 | 19 | 286 | 10 | 275 | 7.99e-110 | 320 |
| MS.gene34457.t1 | MTR_7g103380 | 52.013 | 298 | 123 | 2 | 1 | 287 | 1 | 289 | 3.95e-109 | 318 |
| MS.gene34457.t1 | MTR_7g112560 | 22.711 | 273 | 179 | 6 | 31 | 286 | 4 | 261 | 8.24e-25 | 100 |
| MS.gene34457.t1 | MTR_7g112550 | 25.000 | 284 | 185 | 6 | 23 | 281 | 2 | 282 | 1.12e-23 | 97.8 |
| MS.gene34457.t1 | MTR_1g079260 | 28.755 | 233 | 150 | 4 | 26 | 257 | 2 | 219 | 1.79e-23 | 97.1 |
| MS.gene34457.t1 | MTR_1g100597 | 28.421 | 285 | 164 | 8 | 26 | 283 | 2 | 273 | 2.81e-23 | 96.7 |
| MS.gene34457.t1 | MTR_1g079140 | 37.762 | 143 | 86 | 2 | 30 | 169 | 15 | 157 | 1.68e-22 | 95.1 |
| MS.gene34457.t1 | MTR_4g023570 | 23.735 | 257 | 174 | 6 | 31 | 285 | 4 | 240 | 2.20e-22 | 93.6 |
| MS.gene34457.t1 | MTR_1g079460 | 36.620 | 142 | 88 | 2 | 30 | 169 | 6 | 147 | 5.35e-22 | 93.2 |
| MS.gene34457.t1 | MTR_1g079180 | 34.932 | 146 | 93 | 2 | 26 | 169 | 2 | 147 | 3.67e-21 | 90.9 |
| MS.gene34457.t1 | MTR_1g083580 | 34.266 | 143 | 92 | 2 | 31 | 171 | 11 | 153 | 6.26e-20 | 87.8 |
| MS.gene34457.t1 | MTR_1g100613 | 37.984 | 129 | 77 | 2 | 45 | 172 | 6 | 132 | 4.86e-19 | 84.3 |
| MS.gene34457.t1 | MTR_1g079380 | 34.667 | 150 | 95 | 2 | 26 | 174 | 2 | 149 | 3.58e-18 | 83.2 |
| MS.gene34457.t1 | MTR_1g079370 | 32.530 | 166 | 105 | 4 | 26 | 186 | 2 | 165 | 4.49e-18 | 82.4 |
| MS.gene34457.t1 | MTR_3g452600 | 28.674 | 279 | 152 | 9 | 28 | 281 | 10 | 266 | 5.14e-18 | 82.0 |
| MS.gene34457.t1 | MTR_1g079230 | 27.426 | 237 | 151 | 5 | 26 | 255 | 2 | 224 | 4.29e-17 | 79.7 |
| MS.gene34457.t1 | MTR_1g079200 | 32.877 | 146 | 94 | 3 | 30 | 174 | 6 | 148 | 8.21e-17 | 78.6 |
| MS.gene34457.t1 | MTR_1g079410 | 32.639 | 144 | 94 | 2 | 31 | 171 | 11 | 154 | 6.53e-15 | 73.6 |
| MS.gene34457.t1 | MTR_3g450990 | 27.018 | 285 | 165 | 10 | 28 | 281 | 10 | 282 | 3.17e-14 | 71.6 |
| MS.gene34457.t1 | MTR_1g079850 | 31.034 | 145 | 97 | 2 | 30 | 171 | 6 | 150 | 5.39e-14 | 71.2 |
| MS.gene34457.t1 | MTR_1g079400 | 27.461 | 193 | 134 | 4 | 18 | 205 | 2 | 193 | 2.89e-13 | 68.9 |
| MS.gene34457.t1 | MTR_1g079250 | 31.944 | 144 | 96 | 2 | 30 | 171 | 6 | 149 | 6.49e-13 | 68.2 |
| MS.gene34457.t1 | MTR_2g079100 | 25.957 | 235 | 148 | 5 | 21 | 251 | 2 | 214 | 1.45e-12 | 66.6 |
| MS.gene34457.t1 | MTR_3g006850 | 30.000 | 160 | 92 | 5 | 26 | 169 | 15 | 170 | 4.66e-11 | 62.8 |
| MS.gene34457.t1 | MTR_1g079350 | 32.886 | 149 | 86 | 6 | 30 | 169 | 6 | 149 | 5.81e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34457.t1 | AT3G61060 | 59.574 | 282 | 110 | 3 | 1 | 281 | 1 | 279 | 1.85e-126 | 362 |
| MS.gene34457.t1 | AT3G61060 | 59.364 | 283 | 110 | 4 | 1 | 281 | 1 | 280 | 1.13e-124 | 357 |
| MS.gene34457.t1 | AT5G52120 | 55.019 | 269 | 115 | 1 | 27 | 289 | 20 | 288 | 1.75e-110 | 322 |
| MS.gene34457.t1 | AT1G12710 | 56.296 | 270 | 112 | 3 | 25 | 291 | 25 | 291 | 1.16e-104 | 306 |
| MS.gene34457.t1 | AT1G63090 | 54.104 | 268 | 121 | 2 | 25 | 291 | 23 | 289 | 1.57e-100 | 296 |
| MS.gene34457.t1 | AT3G53000 | 48.973 | 292 | 130 | 3 | 1 | 281 | 1 | 284 | 2.43e-97 | 288 |
| MS.gene34457.t1 | AT1G12710 | 48.718 | 312 | 112 | 4 | 25 | 291 | 25 | 333 | 1.25e-95 | 285 |
| MS.gene34457.t1 | AT1G09155 | 27.586 | 203 | 131 | 3 | 31 | 231 | 3 | 191 | 2.53e-21 | 91.7 |
| MS.gene34457.t1 | AT2G02360 | 37.681 | 138 | 80 | 2 | 33 | 169 | 19 | 151 | 2.69e-21 | 91.3 |
| MS.gene34457.t1 | AT2G02240 | 28.777 | 278 | 148 | 8 | 31 | 282 | 64 | 317 | 3.06e-19 | 86.3 |
| MS.gene34457.t1 | AT2G02230 | 32.278 | 158 | 99 | 3 | 15 | 171 | 21 | 171 | 4.91e-19 | 86.3 |
| MS.gene34457.t1 | AT5G24560 | 27.160 | 162 | 106 | 3 | 30 | 184 | 5 | 161 | 4.10e-18 | 80.9 |
| MS.gene34457.t1 | AT1G80110 | 25.746 | 268 | 174 | 7 | 28 | 282 | 1 | 256 | 2.68e-17 | 80.1 |
| MS.gene34457.t1 | AT2G02340 | 30.994 | 171 | 102 | 4 | 19 | 181 | 27 | 189 | 3.72e-17 | 80.5 |
| MS.gene34457.t1 | AT2G02310 | 35.878 | 131 | 78 | 2 | 30 | 159 | 47 | 172 | 1.47e-16 | 78.6 |
| MS.gene34457.t1 | AT2G02350 | 30.769 | 156 | 101 | 3 | 13 | 166 | 9 | 159 | 1.68e-16 | 78.6 |
| MS.gene34457.t1 | AT2G02250 | 29.714 | 175 | 113 | 4 | 2 | 171 | 18 | 187 | 4.66e-16 | 77.4 |
| MS.gene34457.t1 | AT1G56250 | 24.468 | 282 | 177 | 8 | 31 | 281 | 4 | 280 | 5.59e-15 | 73.9 |
| MS.gene34457.t1 | AT1G56240 | 22.603 | 292 | 170 | 6 | 31 | 281 | 4 | 280 | 5.93e-14 | 70.9 |
| MS.gene34457.t1 | AT2G02300 | 29.801 | 151 | 101 | 2 | 22 | 171 | 28 | 174 | 3.37e-11 | 63.2 |
Find 56 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGCTTATAAATTTCT+TGG | 0.233636 | 1.2:+75712193 | MS.gene34457:CDS |
| TCCACCTGATATATGCAAAT+TGG | 0.341137 | 1.2:+75712093 | MS.gene34457:CDS |
| CATAACTTTCAGACTCCAAT+TGG | 0.346494 | 1.2:+75714876 | MS.gene34457:CDS |
| TTACCATGTTGGAGATTTCA+TGG | 0.347440 | 1.2:+75715050 | MS.gene34457:CDS |
| ATGTGGTGGGTTGAAGTAAT+AGG | 0.354758 | 1.2:+75714817 | MS.gene34457:CDS |
| TCAAAGTCTTTGAAGATAAC+AGG | 0.357934 | 1.2:+75712484 | MS.gene34457:CDS |
| ATTTGCATGGGCCAGGGCAA+TGG | 0.362661 | 1.2:+75715022 | MS.gene34457:CDS |
| TGGATCAAGATGCATGAGTA+TGG | 0.388988 | 1.2:-75712074 | None:intergenic |
| CTAGCCAATTTGCATATATC+AGG | 0.392374 | 1.2:-75712097 | None:intergenic |
| TTTGCATGGGCCAGGGCAAT+GGG | 0.397867 | 1.2:+75715023 | MS.gene34457:CDS |
| GAGTGTTATTTGCATGGGCC+AGG | 0.404946 | 1.2:+75715015 | MS.gene34457:CDS |
| GTACCACCGTCAAAGCGATT+AGG | 0.408204 | 1.2:-75712271 | None:intergenic |
| ATCTATGCAGAGGCCGCCTT+TGG | 0.412675 | 1.2:-75715136 | None:intergenic |
| GAATAGATGATAGAAGATAT+TGG | 0.414837 | 1.2:+75712506 | MS.gene34457:CDS |
| GACATCTTTCTTAGTCATAG+TGG | 0.416582 | 1.2:-75712230 | None:intergenic |
| ATCTCAGAGTGTTATTTGCA+TGG | 0.460843 | 1.2:+75715009 | MS.gene34457:CDS |
| AATTCATCATCATCAAGAAC+GGG | 0.479897 | 1.2:+75712019 | MS.gene34457:CDS |
| AGTCTTTCTCTAAACACAGT+TGG | 0.483039 | 1.2:-75715174 | None:intergenic |
| ACGATGATCAAGTTCATGGC+TGG | 0.486450 | 1.2:+75714935 | MS.gene34457:CDS |
| GGGAAAGTCATCAAAACGAT+TGG | 0.489012 | 1.2:+75714897 | MS.gene34457:CDS |
| CTGATATATGCAAATTGGCT+AGG | 0.492079 | 1.2:+75712098 | MS.gene34457:CDS |
| TCTCACCTGGATTCCTCAGT+TGG | 0.494511 | 1.2:-75712538 | None:intergenic |
| ACATTCCAACTGAGGAATCC+AGG | 0.495554 | 1.2:+75712533 | MS.gene34457:CDS |
| GTAGAGAGTTGGAATCTAAC+GGG | 0.506240 | 1.2:-75714967 | None:intergenic |
| TGGTAATAAGCCCATTGCCC+TGG | 0.511634 | 1.2:-75715033 | None:intergenic |
| TGCAACGATGATCAAGTTCA+TGG | 0.517273 | 1.2:+75714931 | MS.gene34457:CDS |
| ATAACTTTCAGACTCCAATT+GGG | 0.520543 | 1.2:+75714877 | MS.gene34457:CDS |
| GGAAAGTCATCAAAACGATT+GGG | 0.522230 | 1.2:+75714898 | MS.gene34457:CDS |
| TATTCACAGGTTCAAGAATG+TGG | 0.529110 | 1.2:+75714780 | MS.gene34457:intron |
| CAATGGGCTTATTACCATGT+TGG | 0.535550 | 1.2:+75715039 | MS.gene34457:CDS |
| TAATTCATCATCATCAAGAA+CGG | 0.545437 | 1.2:+75712018 | MS.gene34457:CDS |
| CGATGATCAAGTTCATGGCT+GGG | 0.545852 | 1.2:+75714936 | MS.gene34457:CDS |
| TGTCAACCTAATCGCTTTGA+CGG | 0.551447 | 1.2:+75712265 | MS.gene34457:CDS |
| GCAAGAAACTTGTAGCATGA+TGG | 0.553327 | 1.2:-75712178 | None:intergenic |
| TCTCAGAGTGTTATTTGCAT+GGG | 0.559048 | 1.2:+75715010 | MS.gene34457:CDS |
| GCCAATTTGCATATATCAGG+TGG | 0.562917 | 1.2:-75712094 | None:intergenic |
| GACCGTCCGATGTAGAGAGT+TGG | 0.563295 | 1.2:-75714978 | None:intergenic |
| TGTAGAGAGTTGGAATCTAA+CGG | 0.566747 | 1.2:-75714968 | None:intergenic |
| CATATCTTCAACAAATGTGG+TGG | 0.568286 | 1.2:+75714803 | MS.gene34457:CDS |
| CTAGAGTTTGTATTCCCTGT+GGG | 0.569667 | 1.2:+75714844 | MS.gene34457:CDS |
| TGATATATGCAAATTGGCTA+GGG | 0.577318 | 1.2:+75712099 | MS.gene34457:CDS |
| AGTGTTATTTGCATGGGCCA+GGG | 0.596672 | 1.2:+75715016 | MS.gene34457:CDS |
| GTTATGCTGTAACTTCCCAC+AGG | 0.602467 | 1.2:-75714859 | None:intergenic |
| ATTGATTGTACTCATACCAA+AGG | 0.615939 | 1.2:+75715120 | MS.gene34457:CDS |
| TTCCAACTCTCTACATCGGA+CGG | 0.616192 | 1.2:+75714976 | MS.gene34457:CDS |
| CAACCTAATCGCTTTGACGG+TGG | 0.616958 | 1.2:+75712268 | MS.gene34457:CDS |
| TTGGATTTACATTCCAACTG+AGG | 0.622680 | 1.2:+75712525 | MS.gene34457:CDS |
| CAACCATGAAATCTCCAACA+TGG | 0.639418 | 1.2:-75715053 | None:intergenic |
| AAGAAGCTCTATGAAAAGCA+CGG | 0.646856 | 1.2:-75712126 | None:intergenic |
| GCTAGAGTTTGTATTCCCTG+TGG | 0.659976 | 1.2:+75714843 | MS.gene34457:CDS |
| GATTGTACTCATACCAAAGG+CGG | 0.661351 | 1.2:+75715123 | MS.gene34457:CDS |
| TGGCATATCTTCAACAAATG+TGG | 0.668014 | 1.2:+75714800 | MS.gene34457:CDS |
| TGATTGCACTATCTATGCAG+AGG | 0.671933 | 1.2:-75715146 | None:intergenic |
| TAGATTCCAACTCTCTACAT+CGG | 0.677625 | 1.2:+75714972 | MS.gene34457:CDS |
| ATATCTTCAACAAATGTGGT+GGG | 0.687256 | 1.2:+75714804 | MS.gene34457:CDS |
| TTATGCTGTAACTTCCCACA+GGG | 0.694696 | 1.2:-75714858 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAAATATCTATTAAAA+TGG | + | chr1.2:75714210-75714229 | MS.gene34457:intron | 10.0% |
| !! | AATTTCTTGATAAAATCTAA+GGG | + | chr1.2:75713777-75713796 | MS.gene34457:intron | 15.0% |
| !! | ACTATAGAAATGTATAAATA+TGG | + | chr1.2:75712566-75712585 | MS.gene34457:intron | 15.0% |
| !! | ATATGAAAATGTGTTTATAA+CGG | + | chr1.2:75713108-75713127 | MS.gene34457:intron | 15.0% |
| !! | TACAAATCAATTAAAATCAA+TGG | + | chr1.2:75713506-75713525 | MS.gene34457:intron | 15.0% |
| !! | TCTTATCAAAAATAAACATT+AGG | + | chr1.2:75714614-75714633 | MS.gene34457:intron | 15.0% |
| !! | TGAAGAAAAAAAAAATCAAA+AGG | - | chr1.2:75712372-75712391 | None:intergenic | 15.0% |
| !! | TTAAATTTCTACACTAAATT+TGG | - | chr1.2:75713162-75713181 | None:intergenic | 15.0% |
| !!! | AAAGAAAACTTGATTTTTAT+GGG | - | chr1.2:75715093-75715112 | None:intergenic | 15.0% |
| !!! | ATACTTTTTAAGAATGAATT+AGG | + | chr1.2:75712824-75712843 | MS.gene34457:intron | 15.0% |
| !!! | TAAATGATATTTTAATCCAT+GGG | - | chr1.2:75713560-75713579 | None:intergenic | 15.0% |
| !!! | TATAGAATAAAGTTTTCATT+AGG | - | chr1.2:75713287-75713306 | None:intergenic | 15.0% |
| !!! | TTGATTTTAATTGATTTGTA+CGG | - | chr1.2:75713506-75713525 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTTTGTATTCAC+AGG | + | chr1.2:75714767-75714786 | MS.gene34457:intron | 15.0% |
| !! | AAACAAAGATCAAATATAAG+AGG | - | chr1.2:75712601-75712620 | None:intergenic | 20.0% |
| !! | AACTAATTGAAAATGCAAAA+TGG | + | chr1.2:75714723-75714742 | MS.gene34457:intron | 20.0% |
| !! | AAGAAAAGCAGTAATATTAA+CGG | - | chr1.2:75714458-75714477 | None:intergenic | 20.0% |
| !! | AGATGAAAGTTTAATATGTT+CGG | + | chr1.2:75713363-75713382 | MS.gene34457:intron | 20.0% |
| !! | AGGAAAATTGTAATATCTAA+AGG | + | chr1.2:75713594-75713613 | MS.gene34457:intron | 20.0% |
| !! | ATTAACCCTAAAAATTTAGA+AGG | + | chr1.2:75713906-75713925 | MS.gene34457:intron | 20.0% |
| !! | CAATTTCTTGATAAAATCTA+AGG | + | chr1.2:75713776-75713795 | MS.gene34457:intron | 20.0% |
| !! | TAAAATAGAGTAACTTACTT+TGG | - | chr1.2:75712296-75712315 | None:intergenic | 20.0% |
| !! | TATCCTGTAAAAAAAAATAG+TGG | + | chr1.2:75714554-75714573 | MS.gene34457:intron | 20.0% |
| !! | TTGGTCAAATAATAAATAGT+AGG | + | chr1.2:75713394-75713413 | MS.gene34457:intron | 20.0% |
| !! | TTTCTTGCTTATAAATTTCT+TGG | + | chr1.2:75712193-75712212 | MS.gene34457:CDS | 20.0% |
| !!! | AAATGATATTTTAATCCATG+GGG | - | chr1.2:75713559-75713578 | None:intergenic | 20.0% |
| !!! | ATCTTTTCAAAGTCTTATAT+AGG | + | chr1.2:75713881-75713900 | MS.gene34457:intron | 20.0% |
| !!! | CAAAGAAAACTTGATTTTTA+TGG | - | chr1.2:75715094-75715113 | None:intergenic | 20.0% |
| !!! | CATAAAAATCAAGTTTTCTT+TGG | + | chr1.2:75715092-75715111 | MS.gene34457:CDS | 20.0% |
| !!! | CTAAATGATATTTTAATCCA+TGG | - | chr1.2:75713561-75713580 | None:intergenic | 20.0% |
| !!! | GTTTCTTAATATTTTTCATG+TGG | + | chr1.2:75713197-75713216 | MS.gene34457:intron | 20.0% |
| !!! | TAGCATTTTATGGATAATTT+AGG | + | chr1.2:75714101-75714120 | MS.gene34457:intron | 20.0% |
| !!! | TTTAAGAAAAAGCAGTTTTT+GGG | + | chr1.2:75713319-75713338 | MS.gene34457:intron | 20.0% |
| !!! | TTTGCATTTTCAATTAGTTT+TGG | - | chr1.2:75714722-75714741 | None:intergenic | 20.0% |
| !!! | TTTTAAGAAAAAGCAGTTTT+TGG | + | chr1.2:75713318-75713337 | MS.gene34457:intron | 20.0% |
| ! | AAAATTTAGTCACCCTATAT+TGG | + | chr1.2:75712991-75713010 | MS.gene34457:intron | 25.0% |
| ! | AAATTTAGTCACCCTATATT+GGG | + | chr1.2:75712992-75713011 | MS.gene34457:intron | 25.0% |
| ! | AGAAAAATTCAAGAATGACA+TGG | + | chr1.2:75713648-75713667 | MS.gene34457:intron | 25.0% |
| ! | AGAAATATTCAAGAATGACA+TGG | - | chr1.2:75713814-75713833 | None:intergenic | 25.0% |
| ! | ATCGCATATTATAATGAGAA+GGG | - | chr1.2:75714429-75714448 | None:intergenic | 25.0% |
| ! | GAATAGATGATAGAAGATAT+TGG | + | chr1.2:75712506-75712525 | MS.gene34457:CDS | 25.0% |
| ! | TAATTCATCATCATCAAGAA+CGG | + | chr1.2:75712018-75712037 | MS.gene34457:CDS | 25.0% |
| ! | TTAAAAGCCTATTTGCAAAT+TGG | + | chr1.2:75714058-75714077 | MS.gene34457:intron | 25.0% |
| ! | TTAGTATTAAGAAGTTTCTG+CGG | + | chr1.2:75714650-75714669 | MS.gene34457:intron | 25.0% |
| ! | TTGATGTGTGAATAATTTGA+TGG | - | chr1.2:75712898-75712917 | None:intergenic | 25.0% |
| !! | ACAGTTCCTTCTAAATTTTT+AGG | - | chr1.2:75713915-75713934 | None:intergenic | 25.0% |
| !! | ATGAAAATGACCTTTGTTTA+AGG | + | chr1.2:75714177-75714196 | MS.gene34457:intron | 25.0% |
| !! | ATTTTATGTAAACACAAAGC+AGG | - | chr1.2:75712719-75712738 | None:intergenic | 25.0% |
| !! | CAGTTCCTTCTAAATTTTTA+GGG | - | chr1.2:75713914-75713933 | None:intergenic | 25.0% |
| !! | CCATTAGTTTGAAAATATGT+AGG | - | chr1.2:75713460-75713479 | None:intergenic | 25.0% |
| !! | CCTACATATTTTCAAACTAA+TGG | + | chr1.2:75713457-75713476 | MS.gene34457:intron | 25.0% |
| !! | TATGGTCAAATAGCATTTTA+TGG | + | chr1.2:75714091-75714110 | MS.gene34457:intron | 25.0% |
| !! | TGAAAATGACCTTTGTTTAA+GGG | + | chr1.2:75714178-75714197 | MS.gene34457:intron | 25.0% |
| !! | TGAATTATACGCATTTTACT+TGG | + | chr1.2:75714392-75714411 | MS.gene34457:intron | 25.0% |
| !! | TTTGACTAACTTTTTAATGC+AGG | - | chr1.2:75712766-75712785 | None:intergenic | 25.0% |
| !!! | CAAATTGGCTTATGTTTTTA+TGG | + | chr1.2:75714073-75714092 | MS.gene34457:intron | 25.0% |
| !!! | CATTTAGTTTCTTTTCATTG+AGG | + | chr1.2:75713574-75713593 | MS.gene34457:intron | 25.0% |
| !!! | GTTAATATTACTGCTTTTCT+TGG | + | chr1.2:75714457-75714476 | MS.gene34457:intron | 25.0% |
| !!! | TATTGGCTTACATTAATTTC+AGG | + | chr1.2:75713752-75713771 | MS.gene34457:intron | 25.0% |
| !!! | TCTTGATTTGTTTTTCTTTC+TGG | + | chr1.2:75712408-75712427 | MS.gene34457:intron | 25.0% |
| !!! | TGACCACTATTTTTTTTTAC+AGG | - | chr1.2:75714560-75714579 | None:intergenic | 25.0% |
| !!! | TTATACATGTTTAGTCTTGA+GGG | + | chr1.2:75713048-75713067 | MS.gene34457:intron | 25.0% |
| AATGGTTATAGAAGTGAAAG+TGG | + | chr1.2:75713475-75713494 | MS.gene34457:intron | 30.0% | |
| AATTCATCATCATCAAGAAC+GGG | + | chr1.2:75712019-75712038 | MS.gene34457:CDS | 30.0% | |
| ACATAAGCCAATTTGCAAAT+AGG | - | chr1.2:75714068-75714087 | None:intergenic | 30.0% | |
| ATAACTTTCAGACTCCAATT+GGG | + | chr1.2:75714877-75714896 | MS.gene34457:CDS | 30.0% | |
| ATAGTTGTTGACCCAATATA+GGG | - | chr1.2:75713006-75713025 | None:intergenic | 30.0% | |
| ATATCTTCAACAAATGTGGT+GGG | + | chr1.2:75714804-75714823 | MS.gene34457:CDS | 30.0% | |
| ATGTGTGAATAATTTGATGG+TGG | - | chr1.2:75712895-75712914 | None:intergenic | 30.0% | |
| ATTGATTGTACTCATACCAA+AGG | + | chr1.2:75715120-75715139 | MS.gene34457:CDS | 30.0% | |
| CAAAGACACTTCACATAATT+GGG | - | chr1.2:75714323-75714342 | None:intergenic | 30.0% | |
| CAAGACTAAACATGTATAAG+AGG | - | chr1.2:75713047-75713066 | None:intergenic | 30.0% | |
| CATATTCCACGAATAGAATA+TGG | - | chr1.2:75714255-75714274 | None:intergenic | 30.0% | |
| CATTACTTTCCCTTAAACAA+AGG | - | chr1.2:75714190-75714209 | None:intergenic | 30.0% | |
| GACACACATTGAAAATGTTT+AGG | - | chr1.2:75712685-75712704 | None:intergenic | 30.0% | |
| GATCGCATATTATAATGAGA+AGG | - | chr1.2:75714430-75714449 | None:intergenic | 30.0% | |
| TCGCATATTATAATGAGAAG+GGG | - | chr1.2:75714428-75714447 | None:intergenic | 30.0% | |
| TGAAGCTAAGTGAAAAATCA+AGG | - | chr1.2:75712323-75712342 | None:intergenic | 30.0% | |
| TGATATATGCAAATTGGCTA+GGG | + | chr1.2:75712099-75712118 | MS.gene34457:CDS | 30.0% | |
| TGTTTGTCTACAAACCAATT+GGG | - | chr1.2:75714490-75714509 | None:intergenic | 30.0% | |
| TTCTTGGAATATATCCCAAT+TGG | + | chr1.2:75714473-75714492 | MS.gene34457:intron | 30.0% | |
| ! | ACATTTTCCTGAAATTACGA+TGG | + | chr1.2:75713989-75714008 | MS.gene34457:intron | 30.0% |
| ! | CAAATAGTTTGTGTAAGAGA+AGG | + | chr1.2:75712920-75712939 | MS.gene34457:intron | 30.0% |
| ! | TCAAAGTCTTTGAAGATAAC+AGG | + | chr1.2:75712484-75712503 | MS.gene34457:CDS | 30.0% |
| ! | TTAGAAGGAACTGTTGTTTA+AGG | + | chr1.2:75713921-75713940 | MS.gene34457:intron | 30.0% |
| ! | TTGATTTTTATGGGCTCATT+GGG | - | chr1.2:75715084-75715103 | None:intergenic | 30.0% |
| !! | CTTATACATGTTTAGTCTTG+AGG | + | chr1.2:75713047-75713066 | MS.gene34457:intron | 30.0% |
| !! | TTTGTTTTTCTTTCTGGTGT+AGG | + | chr1.2:75712414-75712433 | MS.gene34457:intron | 30.0% |
| !!! | AATATGTTCGGCTCTTTTTT+TGG | + | chr1.2:75713375-75713394 | MS.gene34457:intron | 30.0% |
| !!! | TTATTTTGACCCTGTTTTGA+AGG | + | chr1.2:75712621-75712640 | MS.gene34457:intron | 30.0% |
| AAAGCTTCCATCGTAATTTC+AGG | - | chr1.2:75713999-75714018 | None:intergenic | 35.0% | |
| AAGAAGCTCTATGAAAAGCA+CGG | - | chr1.2:75712129-75712148 | None:intergenic | 35.0% | |
| AGAAACATAGCCTTCAAAAC+AGG | - | chr1.2:75712634-75712653 | None:intergenic | 35.0% | |
| AGCAGTAATATTAACGGTTG+AGG | - | chr1.2:75714452-75714471 | None:intergenic | 35.0% | |
| AGTCTTTCTCTAAACACAGT+TGG | - | chr1.2:75715177-75715196 | None:intergenic | 35.0% | |
| CATAACTTTCAGACTCCAAT+TGG | + | chr1.2:75714876-75714895 | MS.gene34457:CDS | 35.0% | |
| CATATCTTCAACAAATGTGG+TGG | + | chr1.2:75714803-75714822 | MS.gene34457:CDS | 35.0% | |
| CCAAAGACACTTCACATAAT+TGG | - | chr1.2:75714324-75714343 | None:intergenic | 35.0% | |
| CGCATATTATAATGAGAAGG+GGG | - | chr1.2:75714427-75714446 | None:intergenic | 35.0% | |
| CTAGCCAATTTGCATATATC+AGG | - | chr1.2:75712100-75712119 | None:intergenic | 35.0% | |
| CTATGGCAGTTTCTTTATGA+GGG | + | chr1.2:75714025-75714044 | MS.gene34457:intron | 35.0% | |
| CTCATAAAGAAACTGCCATA+GGG | - | chr1.2:75714026-75714045 | None:intergenic | 35.0% | |
| CTGATATATGCAAATTGGCT+AGG | + | chr1.2:75712098-75712117 | MS.gene34457:CDS | 35.0% | |
| CTGTTTGTCTACAAACCAAT+TGG | - | chr1.2:75714491-75714510 | None:intergenic | 35.0% | |
| GAAACATAGCCTTCAAAACA+GGG | - | chr1.2:75712633-75712652 | None:intergenic | 35.0% | |
| GACATCTTTCTTAGTCATAG+TGG | - | chr1.2:75712233-75712252 | None:intergenic | 35.0% | |
| GATAGTTGTTGACCCAATAT+AGG | - | chr1.2:75713007-75713026 | None:intergenic | 35.0% | |
| GCATATTATAATGAGAAGGG+GGG | - | chr1.2:75714426-75714445 | None:intergenic | 35.0% | |
| GGAAAGTCATCAAAACGATT+GGG | + | chr1.2:75714898-75714917 | MS.gene34457:CDS | 35.0% | |
| GGGTTGTTCAGATTATTCTT+TGG | - | chr1.2:75713539-75713558 | None:intergenic | 35.0% | |
| TAGATTCCAACTCTCTACAT+CGG | + | chr1.2:75714972-75714991 | MS.gene34457:CDS | 35.0% | |
| TATGGCAGTTTCTTTATGAG+GGG | + | chr1.2:75714026-75714045 | MS.gene34457:intron | 35.0% | |
| TATTCACAGGTTCAAGAATG+TGG | + | chr1.2:75714780-75714799 | MS.gene34457:intron | 35.0% | |
| TCCACCTGATATATGCAAAT+TGG | + | chr1.2:75712093-75712112 | MS.gene34457:CDS | 35.0% | |
| TCTCACATTGAAATGAGACA+AGG | + | chr1.2:75712963-75712982 | MS.gene34457:intron | 35.0% | |
| TGGCATATCTTCAACAAATG+TGG | + | chr1.2:75714800-75714819 | MS.gene34457:CDS | 35.0% | |
| TGTAGAGAGTTGGAATCTAA+CGG | - | chr1.2:75714971-75714990 | None:intergenic | 35.0% | |
| TGTGTTTATAACGGTGTATG+CGG | + | chr1.2:75713117-75713136 | MS.gene34457:intron | 35.0% | |
| TTACCATGTTGGAGATTTCA+TGG | + | chr1.2:75715050-75715069 | MS.gene34457:CDS | 35.0% | |
| TTGGATTTACATTCCAACTG+AGG | + | chr1.2:75712525-75712544 | MS.gene34457:CDS | 35.0% | |
| ! | CCAATTATGTGAAGTGTCTT+TGG | + | chr1.2:75714321-75714340 | MS.gene34457:intron | 35.0% |
| ! | CTTGATTTTTATGGGCTCAT+TGG | - | chr1.2:75715085-75715104 | None:intergenic | 35.0% |
| ! | TAGTTTGTGTAAGAGAAGGT+TGG | + | chr1.2:75712924-75712943 | MS.gene34457:intron | 35.0% |
| !! | ATCTCAGAGTGTTATTTGCA+TGG | + | chr1.2:75715009-75715028 | MS.gene34457:CDS | 35.0% |
| !! | GTTTTATTGGACAAATGCAG+TGG | + | chr1.2:75712439-75712458 | MS.gene34457:CDS | 35.0% |
| !! | GTTTTGATGACTTTCCCAAT+TGG | - | chr1.2:75714894-75714913 | None:intergenic | 35.0% |
| !! | TCTCAGAGTGTTATTTGCAT+GGG | + | chr1.2:75715010-75715029 | MS.gene34457:CDS | 35.0% |
| !! | TCTGGTGTAGGAAGTTTTAT+TGG | + | chr1.2:75712426-75712445 | MS.gene34457:intron | 35.0% |
| !! | TTTGATGGTGGCTAAATTGA+TGG | - | chr1.2:75712883-75712902 | None:intergenic | 35.0% |
| !!! | TGTTTTGAAGGCTATGTTTC+TGG | + | chr1.2:75712633-75712652 | MS.gene34457:intron | 35.0% |
| !!! | TTCTTCTGCTGATTTTGTGT+GGG | + | chr1.2:75712144-75712163 | MS.gene34457:CDS | 35.0% |
| ATGGCAGTTTCTTTATGAGG+GGG | + | chr1.2:75714027-75714046 | MS.gene34457:intron | 40.0% | |
| CAACCATGAAATCTCCAACA+TGG | - | chr1.2:75715056-75715075 | None:intergenic | 40.0% | |
| CAATAAAATCTCAGCCTGAC+CGG | - | chr1.2:75713737-75713756 | None:intergenic | 40.0% | |
| CCTATGGCAGTTTCTTTATG+AGG | + | chr1.2:75714024-75714043 | MS.gene34457:intron | 40.0% | |
| CCTCATAAAGAAACTGCCAT+AGG | - | chr1.2:75714027-75714046 | None:intergenic | 40.0% | |
| CTAGAGTTTGTATTCCCTGT+GGG | + | chr1.2:75714844-75714863 | MS.gene34457:CDS | 40.0% | |
| GAATAATCTGAACAACCCCA+TGG | + | chr1.2:75713541-75713560 | MS.gene34457:intron | 40.0% | |
| GATTGTACTCATACCAAAGG+CGG | + | chr1.2:75715123-75715142 | MS.gene34457:CDS | 40.0% | |
| GCAAGAAACTTGTAGCATGA+TGG | - | chr1.2:75712181-75712200 | None:intergenic | 40.0% | |
| GCAATGCCATATTCTATTCG+TGG | + | chr1.2:75714246-75714265 | MS.gene34457:intron | 40.0% | |
| GCCAATTTGCATATATCAGG+TGG | - | chr1.2:75712097-75712116 | None:intergenic | 40.0% | |
| GGGAAAGTCATCAAAACGAT+TGG | + | chr1.2:75714897-75714916 | MS.gene34457:CDS | 40.0% | |
| GTAGAGAGTTGGAATCTAAC+GGG | - | chr1.2:75714970-75714989 | None:intergenic | 40.0% | |
| TGATTGCACTATCTATGCAG+AGG | - | chr1.2:75715149-75715168 | None:intergenic | 40.0% | |
| TGCAACGATGATCAAGTTCA+TGG | + | chr1.2:75714931-75714950 | MS.gene34457:CDS | 40.0% | |
| TGGATCAAGATGCATGAGTA+TGG | - | chr1.2:75712077-75712096 | None:intergenic | 40.0% | |
| TGTCAACCTAATCGCTTTGA+CGG | + | chr1.2:75712265-75712284 | MS.gene34457:CDS | 40.0% | |
| TGTTTAGGAGTCAAGACACA+TGG | - | chr1.2:75712670-75712689 | None:intergenic | 40.0% | |
| TTATGCTGTAACTTCCCACA+GGG | - | chr1.2:75714861-75714880 | None:intergenic | 40.0% | |
| ! | CAATGGGCTTATTACCATGT+TGG | + | chr1.2:75715039-75715058 | MS.gene34457:CDS | 40.0% |
| ! | TATTTTTCATGTGGCAGCTG+AGG | + | chr1.2:75713206-75713225 | MS.gene34457:intron | 40.0% |
| ! | TGGGCAAATAGAAGCTTTTG+TGG | - | chr1.2:75714304-75714323 | None:intergenic | 40.0% |
| !! | ATGTGGTGGGTTGAAGTAAT+AGG | + | chr1.2:75714817-75714836 | MS.gene34457:CDS | 40.0% |
| !!! | CTTCTTCTGCTGATTTTGTG+TGG | + | chr1.2:75712143-75712162 | MS.gene34457:CDS | 40.0% |
| ACATTCCAACTGAGGAATCC+AGG | + | chr1.2:75712533-75712552 | MS.gene34457:CDS | 45.0% | |
| ACGATGATCAAGTTCATGGC+TGG | + | chr1.2:75714935-75714954 | MS.gene34457:CDS | 45.0% | |
| ATGGAAGCTTTCTCACCCTA+TGG | + | chr1.2:75714008-75714027 | MS.gene34457:intron | 45.0% | |
| ATGTGGCAGCTGAGGTAAAA+GGG | + | chr1.2:75713214-75713233 | MS.gene34457:intron | 45.0% | |
| CGATGATCAAGTTCATGGCT+GGG | + | chr1.2:75714936-75714955 | MS.gene34457:CDS | 45.0% | |
| GCTAGAGTTTGTATTCCCTG+TGG | + | chr1.2:75714843-75714862 | MS.gene34457:CDS | 45.0% | |
| GTGTATGCGGTGGACAATAA+GGG | + | chr1.2:75713130-75713149 | MS.gene34457:intron | 45.0% | |
| GTTATGCTGTAACTTCCCAC+AGG | - | chr1.2:75714862-75714881 | None:intergenic | 45.0% | |
| GTTTATAACGGTGTATGCGG+TGG | + | chr1.2:75713120-75713139 | MS.gene34457:intron | 45.0% | |
| TCTATAGTGCATCTCTCACC+TGG | - | chr1.2:75712554-75712573 | None:intergenic | 45.0% | |
| TTCCAACTCTCTACATCGGA+CGG | + | chr1.2:75714976-75714995 | MS.gene34457:CDS | 45.0% | |
| ! | CGGTCAGGCTGAGATTTTAT+TGG | + | chr1.2:75713735-75713754 | MS.gene34457:intron | 45.0% |
| ! | GTGGTGGGACTGAAATCTAA+GGG | - | chr1.2:75713685-75713704 | None:intergenic | 45.0% |
| !! | AGTGTTATTTGCATGGGCCA+GGG | + | chr1.2:75715016-75715035 | MS.gene34457:CDS | 45.0% |
| !! | TATATTATATTAATAAACTT+AGG | + | chr1.2:75714354-75714373 | MS.gene34457:intron | 5.0% |
| CAACCTAATCGCTTTGACGG+TGG | + | chr1.2:75712268-75712287 | MS.gene34457:CDS | 50.0% | |
| CATGTGGCAGCTGAGGTAAA+AGG | + | chr1.2:75713213-75713232 | MS.gene34457:intron | 50.0% | |
| GGTGTATGCGGTGGACAATA+AGG | + | chr1.2:75713129-75713148 | MS.gene34457:intron | 50.0% | |
| GTACCACCGTCAAAGCGATT+AGG | - | chr1.2:75712274-75712293 | None:intergenic | 50.0% | |
| TCAGCCTGACCGGAAATCAT+GGG | - | chr1.2:75713727-75713746 | None:intergenic | 50.0% | |
| TCTCACCTGGATTCCTCAGT+TGG | - | chr1.2:75712541-75712560 | None:intergenic | 50.0% | |
| TGGTAATAAGCCCATTGCCC+TGG | - | chr1.2:75715036-75715055 | None:intergenic | 50.0% | |
| TGTGGCAGCTGAGGTAAAAG+GGG | + | chr1.2:75713215-75713234 | MS.gene34457:intron | 50.0% | |
| !! | GAGTGTTATTTGCATGGGCC+AGG | + | chr1.2:75715015-75715034 | MS.gene34457:CDS | 50.0% |
| !! | GGTGGTGGGACTGAAATCTA+AGG | - | chr1.2:75713686-75713705 | None:intergenic | 50.0% |
| ATCTATGCAGAGGCCGCCTT+TGG | - | chr1.2:75715139-75715158 | None:intergenic | 55.0% | |
| ATGGGGTGGTGCGGAAATCA+TGG | - | chr1.2:75713709-75713728 | None:intergenic | 55.0% | |
| ATTTGCATGGGCCAGGGCAA+TGG | + | chr1.2:75715022-75715041 | MS.gene34457:CDS | 55.0% | |
| CAGCCTGACCGGAAATCATG+GGG | - | chr1.2:75713726-75713745 | None:intergenic | 55.0% | |
| CTCAGCCTGACCGGAAATCA+TGG | - | chr1.2:75713728-75713747 | None:intergenic | 55.0% | |
| GACCGTCCGATGTAGAGAGT+TGG | - | chr1.2:75714981-75715000 | None:intergenic | 55.0% | |
| GTGGCAGCTGAGGTAAAAGG+GGG | + | chr1.2:75713216-75713235 | MS.gene34457:intron | 55.0% | |
| TGCGGAAATCATGGGGTGGT+GGG | - | chr1.2:75713700-75713719 | None:intergenic | 55.0% | |
| TGGGGTGGTGCGGAAATCAT+GGG | - | chr1.2:75713708-75713727 | None:intergenic | 55.0% | |
| TTTGCATGGGCCAGGGCAAT+GGG | + | chr1.2:75715023-75715042 | MS.gene34457:CDS | 55.0% | |
| CCACCCCATGATTTCCGGTC+AGG | + | chr1.2:75713720-75713739 | MS.gene34457:intron | 60.0% | |
| CCGCACCACCCCATGATTTC+CGG | + | chr1.2:75713715-75713734 | MS.gene34457:intron | 60.0% | |
| CCGGAAATCATGGGGTGGTG+CGG | - | chr1.2:75713718-75713737 | None:intergenic | 60.0% | |
| CCTGACCGGAAATCATGGGG+TGG | - | chr1.2:75713723-75713742 | None:intergenic | 60.0% | |
| GGGGTGGTGCGGAAATCATG+GGG | - | chr1.2:75713707-75713726 | None:intergenic | 60.0% | |
| GTGCGGAAATCATGGGGTGG+TGG | - | chr1.2:75713701-75713720 | None:intergenic | 60.0% | |
| GTGGTGCGGAAATCATGGGG+TGG | - | chr1.2:75713704-75713723 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 75711962 | 75715209 | 75711962 | ID=MS.gene34457 |
| chr1.2 | mRNA | 75711962 | 75715209 | 75711962 | ID=MS.gene34457.t1;Parent=MS.gene34457 |
| chr1.2 | exon | 75711962 | 75712297 | 75711962 | ID=MS.gene34457.t1.exon1;Parent=MS.gene34457.t1 |
| chr1.2 | CDS | 75711962 | 75712297 | 75711962 | ID=cds.MS.gene34457.t1;Parent=MS.gene34457.t1 |
| chr1.2 | exon | 75712436 | 75712554 | 75712436 | ID=MS.gene34457.t1.exon2;Parent=MS.gene34457.t1 |
| chr1.2 | CDS | 75712436 | 75712554 | 75712436 | ID=cds.MS.gene34457.t1;Parent=MS.gene34457.t1 |
| chr1.2 | exon | 75714789 | 75715209 | 75714789 | ID=MS.gene34457.t1.exon3;Parent=MS.gene34457.t1 |
| chr1.2 | CDS | 75714789 | 75715209 | 75714789 | ID=cds.MS.gene34457.t1;Parent=MS.gene34457.t1 |
| Gene Sequence |
| Protein sequence |
