AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35022


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35022.t1 MTR_4g094235 92.620 271 2 1 1 271 1 253 1.87e-105 308
MS.gene35022.t1 MTR_4g094235 91.912 272 3 2 1 271 1 254 1.28e-103 304
MS.gene35022.t1 MTR_5g070450 68.821 263 39 2 1 220 1 263 1.35e-77 237
MS.gene35022.t1 MTR_4g118630 38.961 77 47 0 17 93 49 125 3.05e-14 72.0
MS.gene35022.t1 MTR_3g083550 41.558 77 45 0 17 93 42 118 1.89e-13 68.9
MS.gene35022.t1 MTR_1g054675 41.558 77 45 0 17 93 44 120 2.86e-13 68.2
MS.gene35022.t1 MTR_5g079870 43.750 80 45 0 13 92 44 123 3.50e-13 68.9
MS.gene35022.t1 MTR_3g025880 43.421 76 43 0 18 93 46 121 6.34e-13 68.9
MS.gene35022.t1 MTR_5g070100 42.105 76 44 0 14 89 34 109 3.90e-12 66.6
MS.gene35022.t1 MTR_6g477870 39.474 76 46 0 18 93 97 172 8.10e-12 63.2
MS.gene35022.t1 MTR_7g106440 40.909 88 52 0 18 105 111 198 2.83e-11 63.5
MS.gene35022.t1 MTR_4g109540 37.975 79 49 0 15 93 41 119 5.14e-11 62.4
MS.gene35022.t1 MTR_4g081520 35.065 77 50 0 17 93 52 128 5.73e-11 60.1
MS.gene35022.t1 MTR_4g109540 37.805 82 51 0 12 93 46 127 8.02e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35022.t1 AT5G64200 61.484 283 70 8 1 255 1 272 4.56e-76 234
MS.gene35022.t1 AT5G64200 61.484 283 70 8 1 255 1 272 4.56e-76 234
MS.gene35022.t1 AT5G18810 38.961 77 47 0 17 93 48 124 1.57e-15 74.7
MS.gene35022.t1 AT5G18810 38.961 77 47 0 17 93 48 124 1.59e-15 74.7
MS.gene35022.t1 AT1G55310 41.558 77 45 0 17 93 37 113 6.14e-14 70.1
MS.gene35022.t1 AT1G55310 41.558 77 45 0 17 93 37 113 6.14e-14 70.1
MS.gene35022.t1 AT1G55310 41.558 77 45 0 17 93 37 113 6.55e-14 70.9
MS.gene35022.t1 AT3G13570 32.353 238 127 7 17 234 38 261 1.26e-12 67.0
MS.gene35022.t1 AT3G10400 37.778 90 56 0 17 106 58 147 1.97e-12 66.2
MS.gene35022.t1 AT5G03580 39.189 74 44 1 17 90 18 90 5.77e-12 61.6
MS.gene35022.t1 AT3G47120 40.000 75 45 0 18 92 38 112 7.93e-12 65.5
MS.gene35022.t1 AT3G47120 41.667 72 42 0 18 89 38 109 8.68e-12 65.1
MS.gene35022.t1 AT5G06210 40.789 76 45 0 18 93 36 111 1.16e-11 62.0
MS.gene35022.t1 AT5G54580 33.333 84 56 0 10 93 50 133 2.33e-11 61.2
MS.gene35022.t1 AT1G73530 38.158 76 47 0 18 93 79 154 3.65e-11 61.2

Find 103 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCGTTGTTTGATAAGTA+TGG 0.248443 4.4:-20796499 MS.gene35022:CDS
TTTGGAGATGGGCTCCTCTT+TGG 0.256933 4.4:+20794455 None:intergenic
TTTGAATACCTTCGATCTTT+GGG 0.287302 4.4:+20796454 None:intergenic
ACTTACATCCTCTCAGCATT+AGG 0.296368 4.4:+20796131 None:intergenic
CCACCACGGCTACGATTATC+AGG 0.312025 4.4:+20794320 None:intergenic
TTTGGAGAAGGGCTCCTCTT+TGG 0.312922 4.4:+20794419 None:intergenic
TTTGGAGAAGGGCTCCTCTT+TGG 0.312922 4.4:+20794437 None:intergenic
ACTTATCAAACAACGGAAAT+AGG 0.314806 4.4:+20796503 None:intergenic
ACTGTCCAGTTTGCAAAATA+TGG 0.319049 4.4:-20796155 MS.gene35022:CDS
TCCTTGAGCTCTTTGATCTC+GGG 0.321129 4.4:+20795586 None:intergenic
CTCCTTGAGCTCTTTGATCT+CGG 0.321782 4.4:+20795585 None:intergenic
TTCAGAGAAGGGCTCCTCTT+TGG 0.328760 4.4:+20794401 None:intergenic
ACAGACACCGTGGGAGAGAT+AGG 0.351088 4.4:-20794745 MS.gene35022:CDS
GTGCATTCACCTTCTCTTGC+TGG 0.356356 4.4:+20795554 None:intergenic
GCTGCTGTCTTCGATAATAT+TGG 0.364257 4.4:-20794064 MS.gene35022:CDS
GGTTACAAGGGCCGTGGAAG+GGG 0.372918 4.4:-20794683 MS.gene35022:CDS
TTTGGAGATGGGCTCCTCCT+TGG 0.382161 4.4:+20794473 None:intergenic
TACACTAGTCGAGGTGTCTC+TGG 0.401395 4.4:+20794090 None:intergenic
ACTACAAAGAAAAGGATTAC+AGG 0.405827 4.4:-20794808 MS.gene35022:CDS
GACGCAGTTCTATTCCTAAA+AGG 0.418222 4.4:-20794505 MS.gene35022:CDS
CTTACATCCTCTCAGCATTA+GGG 0.418601 4.4:+20796132 None:intergenic
GATGGGCTCCTCTTTGGAGA+TGG 0.418712 4.4:+20794461 None:intergenic
GAAGGGCTCCTCTTTGGAGA+TGG 0.419034 4.4:+20794443 None:intergenic
GGAATAGAACTGCGTCGCAC+TGG 0.428015 4.4:+20794512 None:intergenic
GATGGGCTCCTCCTTGGAGA+AGG 0.432845 4.4:+20794479 None:intergenic
GAGTAGGTATCGGAGATGTC+TGG 0.437496 4.4:+20796654 None:intergenic
ACCTGTCCACTGATCTGCTT+CGG 0.440722 4.4:+20794630 None:intergenic
TGGTTACAAGGGCCGTGGAA+GGG 0.452023 4.4:-20794684 MS.gene35022:CDS
ATGGGCTCCTCTTTGGAGAT+GGG 0.454316 4.4:+20794462 None:intergenic
AAGGGCTCCTCTTTGGAGAT+GGG 0.469599 4.4:+20794444 None:intergenic
ATGTCTCACTTCGGTAGGTC+AGG 0.470526 4.4:-20796681 MS.gene35022:CDS
AAGCTTCCAAGGCTGTTGAT+AGG 0.471644 4.4:-20796300 MS.gene35022:CDS
TGCATTCACCTTCTCTTGCT+GGG 0.474920 4.4:+20795555 None:intergenic
CTGGTTACAAGGGCCGTGGA+AGG 0.484019 4.4:-20794685 MS.gene35022:CDS
GAATAGAACTGCGTCGCACT+GGG 0.488305 4.4:+20794513 None:intergenic
CTTCCACGGCCCTTGTAACC+AGG 0.492291 4.4:+20794686 None:intergenic
TAGTGCTAGTCCTGGTTACA+AGG 0.492924 4.4:-20794696 MS.gene35022:CDS
GTTACAAGGGCCGTGGAAGG+GGG 0.499632 4.4:-20794682 MS.gene35022:CDS
GGCTTCTGCTTCGGCGACGA+TGG 0.500908 4.4:+20794720 None:intergenic
GTCGAGCCTATCAACAGCCT+TGG 0.507162 4.4:+20796294 None:intergenic
CGGAAATAGGTCATCGGCGG+TGG 0.508213 4.4:+20796516 None:intergenic
TACGATTATCAGGACTTTCA+CGG 0.509187 4.4:+20794330 None:intergenic
GTCGCAGCAGGAGTTATGAT+AGG 0.511200 4.4:-20794778 MS.gene35022:CDS
ATGGGCTCCTCCTTGGAGAA+GGG 0.511692 4.4:+20794480 None:intergenic
TAGCACTACGGCTTCTGCTT+CGG 0.518667 4.4:+20794711 None:intergenic
AACTGCGTCGCACTGGGGAG+CGG 0.520493 4.4:+20794519 None:intergenic
CCGTGATGACTACAAAGAAA+AGG 0.521902 4.4:-20794816 MS.gene35022:CDS
GAAGGGCTCCTCTTTGGAGA+AGG 0.523124 4.4:+20794425 None:intergenic
GCCGAAGCAGATCAGTGGAC+AGG 0.523668 4.4:-20794631 MS.gene35022:intron
GAAGGGCTCCTCTTTGGAGA+AGG 0.530560 4.4:+20794407 None:intergenic
ACAGGAGGAGAAGTCGCAGC+AGG 0.531528 4.4:-20794790 MS.gene35022:CDS
TTATTTACAGTCAGAAAGGA+AGG 0.534511 4.4:-20795623 MS.gene35022:intron
GTTGAGAACAAGGAGAGAGT+AGG 0.544195 4.4:+20796638 None:intergenic
GCCGCAGTCCCAGCAAGAGA+AGG 0.547662 4.4:-20795563 MS.gene35022:intron
ATATTATCGAAGACAGCAGC+AGG 0.548296 4.4:+20794067 None:intergenic
CCTTGAGCTCTTTGATCTCG+GGG 0.548590 4.4:+20795587 None:intergenic
AGTCCTGGTTACAAGGGCCG+TGG 0.550812 4.4:-20794689 MS.gene35022:CDS
ATATGCTGATGAAGCTTCCA+AGG 0.553657 4.4:-20796311 MS.gene35022:CDS
TTGAATACCTTCGATCTTTG+GGG 0.554262 4.4:+20796455 None:intergenic
TACTACGACGCTCATCATCA+TGG 0.556930 4.4:+20794657 None:intergenic
ACCTTCTCTTGCTGGGACTG+CGG 0.558264 4.4:+20795562 None:intergenic
AACAAGGAGAGAGTAGGTAT+CGG 0.558892 4.4:+20796644 None:intergenic
AAGGGCTCCTCTTTGGAGAA+GGG 0.567143 4.4:+20794408 None:intergenic
AAGGGCTCCTCTTTGGAGAA+GGG 0.569675 4.4:+20794426 None:intergenic
GTTGTTTGATAAGTATGGCA+AGG 0.571156 4.4:-20796494 MS.gene35022:CDS
AGAGGAGCCCTTCTCTGAAG+AGG 0.576065 4.4:-20794397 MS.gene35022:CDS
CAGACACCGTGGGAGAGATA+GGG 0.582711 4.4:-20794744 MS.gene35022:CDS
GATATGCTCCTCTTCAGAGA+AGG 0.584099 4.4:+20794389 None:intergenic
ATAATCGTAGCCGTGGTGGA+AGG 0.585483 4.4:-20794316 MS.gene35022:intron
AGAAGCCGTAGTGCTAGTCC+TGG 0.586089 4.4:-20794704 MS.gene35022:CDS
TAGAAGCCGAAGCAGATCAG+TGG 0.590371 4.4:-20794636 MS.gene35022:CDS
CAACCATGTCTCACTTCGGT+AGG 0.602311 4.4:-20796686 None:intergenic
GAAAGGACTGGTGAATCGAG+AGG 0.603562 4.4:-20796355 MS.gene35022:intron
ATATGCTCCTCTTCAGAGAA+GGG 0.603871 4.4:+20794390 None:intergenic
CCCCGAGATCAAAGAGCTCA+AGG 0.604164 4.4:-20795587 MS.gene35022:CDS
AGCAGCAGGTACACTAGTCG+AGG 0.610379 4.4:+20794081 None:intergenic
CTAAAAGGAGCCCTTCTCCA+AGG 0.613769 4.4:-20794490 MS.gene35022:CDS
GGAAGGTGATGTTGAGAACA+AGG 0.616882 4.4:+20796628 None:intergenic
AAATCAACCATGTCTCACTT+CGG 0.630425 4.4:-20796690 None:intergenic
TTGCCATACTTATCAAACAA+CGG 0.633797 4.4:+20796496 None:intergenic
AAACAACGGAAATAGGTCAT+CGG 0.637663 4.4:+20796510 None:intergenic
AGTCCTGATAATCGTAGCCG+TGG 0.639294 4.4:-20794323 MS.gene35022:CDS
TCTTTATCCCCAAAGATCGA+AGG 0.640188 4.4:-20796462 MS.gene35022:intron
AGAGGAGCCCTTCTCCAAAG+AGG 0.643213 4.4:-20794415 MS.gene35022:CDS
AGAGGAGCCCTTCTCCAAAG+AGG 0.643213 4.4:-20794433 MS.gene35022:CDS
TTATCAGGACTTTCACGGAG+TGG 0.644827 4.4:+20794335 None:intergenic
TGTAACCAGGACTAGCACTA+CGG 0.646574 4.4:+20794699 None:intergenic
AAGGCTGTTGATAGGCTCGA+CGG 0.648087 4.4:-20796292 MS.gene35022:intron
AGAGGAGCCCATCTCCAAAG+AGG 0.655051 4.4:-20794451 MS.gene35022:CDS
GGAGGAGCCCATCTCCAAAG+AGG 0.655051 4.4:-20794469 MS.gene35022:CDS
CCTGATAATCGTAGCCGTGG+TGG 0.655888 4.4:-20794320 MS.gene35022:CDS
TGACCTACCGAAGTGAGACA+TGG 0.657356 4.4:+20796683 None:intergenic
ACAAAGAAAAGGATTACAGG+AGG 0.659007 4.4:-20794805 MS.gene35022:CDS
GATGGTCCCTATCTCTCCCA+CGG 0.664269 4.4:+20794738 None:intergenic
AGTGCTAGTCCTGGTTACAA+GGG 0.676008 4.4:-20794695 MS.gene35022:CDS
TAGGTATCGGAGATGTCTGG+AGG 0.687472 4.4:+20796657 None:intergenic
CATGAACGTGACAGACACCG+TGG 0.695959 4.4:-20794755 MS.gene35022:CDS
ATGAACGTGACAGACACCGT+GGG 0.698318 4.4:-20794754 MS.gene35022:CDS
AATAGAACTGCGTCGCACTG+GGG 0.699899 4.4:+20794514 None:intergenic
AAAGGAGCCCTTCTCCAAGG+AGG 0.702723 4.4:-20794487 MS.gene35022:CDS
CAACGGAAATAGGTCATCGG+CGG 0.703502 4.4:+20796513 None:intergenic
GCGTAAAAGACCTTCCACCA+CGG 0.704034 4.4:+20794306 None:intergenic
AATATGGCCCTAATGCTGAG+AGG 0.735571 4.4:-20796139 MS.gene35022:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGATAAATGAAAAATT+GGG + chr4.4:20794335-20794354 None:intergenic 10.0%
!! TAATTTGATAAATGAAAAAT+TGG + chr4.4:20794336-20794355 None:intergenic 10.0%
!! ATTTGATAAATGAAAAATTG+GGG + chr4.4:20794334-20794353 None:intergenic 15.0%
!!! ATTTTCTTGTATTTTTTGAA+AGG - chr4.4:20794369-20794388 MS.gene35022:CDS 15.0%
!!! ATTTTTCATTTTTGTTATGA+TGG - chr4.4:20794642-20794661 MS.gene35022:CDS 15.0%
!! AAATTTGAGTGTAAAAATTG+TGG - chr4.4:20794836-20794855 MS.gene35022:intron 20.0%
!! CTTATTCTTGAACTTAATAA+TGG - chr4.4:20796525-20796544 MS.gene35022:intron 20.0%
!! TAAACATTCCAATTATCAAT+TGG - chr4.4:20795749-20795768 MS.gene35022:intron 20.0%
!! TCAAATAACAATAATTATGG+TGG + chr4.4:20796179-20796198 None:intergenic 20.0%
!! TTAACATGCTTAAATTTAAG+AGG + chr4.4:20795470-20795489 None:intergenic 20.0%
!! TTTGATAAATGAAAAATTGG+GGG + chr4.4:20794333-20794352 None:intergenic 20.0%
!!! TATTTTATTTACAGTCAGAA+AGG - chr4.4:20795114-20795133 MS.gene35022:intron 20.0%
! ACTAATGTCTAATTGTTTGT+AGG - chr4.4:20795900-20795919 MS.gene35022:intron 25.0%
! ATCATGATGTTTATATAACG+AGG - chr4.4:20794711-20794730 MS.gene35022:CDS 25.0%
! ATCATTGAAAATCCTAGAAA+TGG + chr4.4:20795366-20795385 None:intergenic 25.0%
! CAAATGTAAATAGAATTGAG+CGG + chr4.4:20796602-20796621 None:intergenic 25.0%
! CATCATGATATAGAAAATCA+AGG + chr4.4:20794700-20794719 None:intergenic 25.0%
! GGCTCAAATAACAATAATTA+TGG + chr4.4:20796182-20796201 None:intergenic 25.0%
! TCAATTCTATTTACATTTGC+AGG - chr4.4:20796603-20796622 MS.gene35022:intron 25.0%
! TTTACTACTGTACATTACAA+TGG + chr4.4:20795733-20795752 None:intergenic 25.0%
!! AGAGTGATCATTGAATTTTA+TGG - chr4.4:20795334-20795353 MS.gene35022:intron 25.0%
!! CATATCAACCAATTGATAAT+TGG + chr4.4:20795760-20795779 None:intergenic 25.0%
!! TTCAATTAGAAGTACAGTTT+AGG + chr4.4:20795556-20795575 None:intergenic 25.0%
!! TTCAATTAGAAGTACAGTTT+CGG + chr4.4:20795556-20795575 None:intergenic 25.0%
!!! AAGAAACGATTGATTTTTTC+AGG - chr4.4:20794538-20794557 MS.gene35022:intron 25.0%
!!! AATTGTCTTTTGTTGACTTT+TGG - chr4.4:20795676-20795695 MS.gene35022:intron 25.0%
!!! AGAAACGATTGATTTTTTCA+GGG - chr4.4:20794539-20794558 MS.gene35022:intron 25.0%
ACTACAAAGAAAAGGATTAC+AGG - chr4.4:20795933-20795952 MS.gene35022:intron 30.0%
ACTTATCAAACAACGGAAAT+AGG + chr4.4:20794241-20794260 None:intergenic 30.0%
ATTCAGTTGCATACTGATAT+TGG - chr4.4:20795025-20795044 MS.gene35022:intron 30.0%
CAAACTAAATCTATTCGACA+GGG + chr4.4:20794985-20795004 None:intergenic 30.0%
CAAGTTTGAATGAAATGTAG+AGG - chr4.4:20794888-20794907 MS.gene35022:intron 30.0%
GCTGTTGAGAATAACAAAAA+AGG + chr4.4:20796203-20796222 None:intergenic 30.0%
TATCAGTATGCAACTGAATA+AGG + chr4.4:20795024-20795043 None:intergenic 30.0%
TCAAACTAAATCTATTCGAC+AGG + chr4.4:20794986-20795005 None:intergenic 30.0%
TTATTTACAGTCAGAAAGGA+AGG - chr4.4:20795118-20795137 MS.gene35022:intron 30.0%
TTGCCATACTTATCAAACAA+CGG + chr4.4:20794248-20794267 None:intergenic 30.0%
TTTCCGTTGTTTGATAAGTA+TGG - chr4.4:20794242-20794261 MS.gene35022:intron 30.0%
TTTGAATACCTTCGATCTTT+GGG + chr4.4:20794290-20794309 None:intergenic 30.0%
! AACAGAGTGTTAGGTTAATT+AGG + chr4.4:20794189-20794208 None:intergenic 30.0%
! AATTGGTTGATATGCTCAAT+GGG - chr4.4:20795766-20795785 MS.gene35022:intron 30.0%
! TTTTGAATACCTTCGATCTT+TGG + chr4.4:20794291-20794310 None:intergenic 30.0%
!!! AGTTGTCTTTTGTTGACTTT+TGG - chr4.4:20795575-20795594 MS.gene35022:CDS 30.0%
!!! ATTGATTTTTTCAGGGAGAA+TGG - chr4.4:20794546-20794565 MS.gene35022:intron 30.0%
!!! CTTGTATTTTTTGAAAGGAC+TGG - chr4.4:20794374-20794393 MS.gene35022:CDS 30.0%
AAACAACGGAAATAGGTCAT+CGG + chr4.4:20794234-20794253 None:intergenic 35.0%
AAACCCCACAGCTTATATTA+TGG - chr4.4:20795505-20795524 MS.gene35022:intron 35.0%
AAGAATGTCAAAACACCACT+GGG + chr4.4:20795853-20795872 None:intergenic 35.0%
AATGGATCAAAAAGCCATCT+TGG - chr4.4:20796543-20796562 MS.gene35022:intron 35.0%
ACAAAGAAAAGGATTACAGG+AGG - chr4.4:20795936-20795955 MS.gene35022:intron 35.0%
ACAACACTCTATAAGCAACA+AGG + chr4.4:20795228-20795247 None:intergenic 35.0%
ACACCATAATATAAGCTGTG+GGG + chr4.4:20795511-20795530 None:intergenic 35.0%
ACAGCTTATATTATGGTGTC+TGG - chr4.4:20795512-20795531 MS.gene35022:intron 35.0%
ACATCACCATTTGAATTTCG+AGG + chr4.4:20796493-20796512 None:intergenic 35.0%
ACTGTCCAGTTTGCAAAATA+TGG - chr4.4:20794586-20794605 MS.gene35022:intron 35.0%
AGACACCATAATATAAGCTG+TGG + chr4.4:20795513-20795532 None:intergenic 35.0%
ATCTACAAGCACGATTACAA+TGG + chr4.4:20795632-20795651 None:intergenic 35.0%
CAGTTTGATTCTGCTTCTTA+AGG - chr4.4:20795430-20795449 MS.gene35022:intron 35.0%
GACACCATAATATAAGCTGT+GGG + chr4.4:20795512-20795531 None:intergenic 35.0%
GTTGTTTGATAAGTATGGCA+AGG - chr4.4:20794247-20794266 MS.gene35022:intron 35.0%
TAACTCAAACATAAACCACG+TGG + chr4.4:20794810-20794829 None:intergenic 35.0%
TACGATTATCAGGACTTTCA+CGG + chr4.4:20796414-20796433 None:intergenic 35.0%
TTATGGCTGAAACCATTTCT+AGG - chr4.4:20795351-20795370 MS.gene35022:intron 35.0%
TTGAATACCTTCGATCTTTG+GGG + chr4.4:20794289-20794308 None:intergenic 35.0%
TTGATTCTGCTTCTTAAGGA+GGG - chr4.4:20795434-20795453 MS.gene35022:intron 35.0%
TTTGATTCTGCTTCTTAAGG+AGG - chr4.4:20795433-20795452 MS.gene35022:intron 35.0%
! AGGAAGAAAAACAGAGTGTT+AGG + chr4.4:20794198-20794217 None:intergenic 35.0%
! CAATTGGTTGATATGCTCAA+TGG - chr4.4:20795765-20795784 MS.gene35022:intron 35.0%
! CCTTTTCTTTGTAGTCATCA+CGG + chr4.4:20795928-20795947 None:intergenic 35.0%
! GTTTAGGATATCTACAAGCA+TGG + chr4.4:20795540-20795559 None:intergenic 35.0%
! TTCCTATTTGATAGCCAAGA+TGG + chr4.4:20796560-20796579 None:intergenic 35.0%
!! TTATAGAGTGTTGTGGATGT+AGG - chr4.4:20795234-20795253 MS.gene35022:intron 35.0%
!! TTGTTGCTTATAGAGTGTTG+TGG - chr4.4:20795227-20795246 MS.gene35022:intron 35.0%
!!! GGGATCTTATGTGTTGTTTT+TGG - chr4.4:20795786-20795805 MS.gene35022:intron 35.0%
!!! GTCTTTTGTTGACTTTTGGT+AGG - chr4.4:20795579-20795598 MS.gene35022:CDS 35.0%
AAATTGAGTTCAATGCCACG+TGG - chr4.4:20794792-20794811 MS.gene35022:CDS 40.0%
AACAAGGAGAGAGTAGGTAT+CGG + chr4.4:20794100-20794119 None:intergenic 40.0%
ACAGAGAGAGAAGAGAGAAA+AGG + chr4.4:20794150-20794169 None:intergenic 40.0%
ACCATTTGAATTTCGAGGAG+AGG + chr4.4:20796488-20796507 None:intergenic 40.0%
ACTCTATAAGCAACAAGGAC+AGG + chr4.4:20795223-20795242 None:intergenic 40.0%
ACTTACATCCTCTCAGCATT+AGG + chr4.4:20794613-20794632 None:intergenic 40.0%
AGAGAAAAGGGTTTCGCTTA+CGG + chr4.4:20794137-20794156 None:intergenic 40.0%
AGCCATCTTGGCTATCAAAT+AGG - chr4.4:20796555-20796574 MS.gene35022:intron 40.0%
ATATGCTCCTCTTCAGAGAA+GGG + chr4.4:20796354-20796373 None:intergenic 40.0%
ATATGCTGATGAAGCTTCCA+AGG - chr4.4:20794430-20794449 MS.gene35022:CDS 40.0%
ATATTATCGAAGACAGCAGC+AGG + chr4.4:20796677-20796696 None:intergenic 40.0%
CAAGAATGTCAAAACACCAC+TGG + chr4.4:20795854-20795873 None:intergenic 40.0%
CAGAGAGAGAAGAGAGAAAA+GGG + chr4.4:20794149-20794168 None:intergenic 40.0%
CATTTGAATTTCGAGGAGAG+GGG + chr4.4:20796486-20796505 None:intergenic 40.0%
CCATTTGAATTTCGAGGAGA+GGG + chr4.4:20796487-20796506 None:intergenic 40.0%
CCGTGATGACTACAAAGAAA+AGG - chr4.4:20795925-20795944 MS.gene35022:intron 40.0%
CTTACATCCTCTCAGCATTA+GGG + chr4.4:20794612-20794631 None:intergenic 40.0%
GACGCAGTTCTATTCCTAAA+AGG - chr4.4:20796236-20796255 MS.gene35022:intron 40.0%
GCTGCTGTCTTCGATAATAT+TGG - chr4.4:20796677-20796696 MS.gene35022:CDS 40.0%
TAGAATTGAGCGGTTGCAAA+AGG + chr4.4:20796592-20796611 None:intergenic 40.0%
TCTTTATCCCCAAAGATCGA+AGG - chr4.4:20794279-20794298 MS.gene35022:intron 40.0%
TGATTCTGCTTCTTAAGGAG+GGG - chr4.4:20795435-20795454 MS.gene35022:intron 40.0%
TGCATACTGATATTGGATGC+TGG - chr4.4:20795032-20795051 MS.gene35022:intron 40.0%
! TAGGGCCATATTTTGCAAAC+TGG + chr4.4:20794594-20794613 None:intergenic 40.0%
! TTGTGGATGTAGGAGAGTTT+TGG - chr4.4:20795244-20795263 MS.gene35022:intron 40.0%
!! CACTCTGTTTTTCTTCCTCT+AGG - chr4.4:20794200-20794219 MS.gene35022:intron 40.0%
!! TTTTCAGGGAGAATGGTTGA+TGG - chr4.4:20794553-20794572 MS.gene35022:intron 40.0%
AAAAGGGTTTCGCTTACGGA+AGG + chr4.4:20794133-20794152 None:intergenic 45.0%
AAGCTTCCAAGGCTGTTGAT+AGG - chr4.4:20794441-20794460 MS.gene35022:CDS 45.0%
AATATGGCCCTAATGCTGAG+AGG - chr4.4:20794602-20794621 MS.gene35022:intron 45.0%
AATTCACTTCTCGTACCCAG+TGG - chr4.4:20795835-20795854 MS.gene35022:intron 45.0%
AGGGTTACTCAGTGTGTGTT+TGG + chr4.4:20794966-20794985 None:intergenic 45.0%
AGTGCTAGTCCTGGTTACAA+GGG - chr4.4:20796046-20796065 MS.gene35022:intron 45.0%
CCCTCTCCTCGAAATTCAAA+TGG - chr4.4:20796484-20796503 MS.gene35022:CDS 45.0%
CTCCTTGAGCTCTTTGATCT+CGG + chr4.4:20795159-20795178 None:intergenic 45.0%
GATATGCTCCTCTTCAGAGA+AGG + chr4.4:20796355-20796374 None:intergenic 45.0%
GGAAGGTGATGTTGAGAACA+AGG + chr4.4:20794116-20794135 None:intergenic 45.0%
GTTGAGAACAAGGAGAGAGT+AGG + chr4.4:20794106-20794125 None:intergenic 45.0%
TACTACGACGCTCATCATCA+TGG + chr4.4:20796087-20796106 None:intergenic 45.0%
TAGTGCTAGTCCTGGTTACA+AGG - chr4.4:20796045-20796064 MS.gene35022:intron 45.0%
TCCTTGAGCTCTTTGATCTC+GGG + chr4.4:20795158-20795177 None:intergenic 45.0%
TGCATTCACCTTCTCTTGCT+GGG + chr4.4:20795189-20795208 None:intergenic 45.0%
TTATCAGGACTTTCACGGAG+TGG + chr4.4:20796409-20796428 None:intergenic 45.0%
! TGTAACCAGGACTAGCACTA+CGG + chr4.4:20796045-20796064 None:intergenic 45.0%
!! TGGATGTAGGAGAGTTTTGG+TGG - chr4.4:20795247-20795266 MS.gene35022:intron 45.0%
!! TCATTTATTTAAAAAAAAAA+GGG - chr4.4:20794495-20794514 MS.gene35022:CDS 5.0%
!! TTCATTTATTTAAAAAAAAA+AGG - chr4.4:20794494-20794513 MS.gene35022:CDS 5.0%
AATAGAACTGCGTCGCACTG+GGG + chr4.4:20796230-20796249 None:intergenic 50.0%
ACCTGTCCACTGATCTGCTT+CGG + chr4.4:20796114-20796133 None:intergenic 50.0%
AGTCCTGATAATCGTAGCCG+TGG - chr4.4:20796418-20796437 MS.gene35022:intron 50.0%
ATGAACGTGACAGACACCGT+GGG - chr4.4:20795987-20796006 MS.gene35022:intron 50.0%
ATGTCTCACTTCGGTAGGTC+AGG - chr4.4:20794060-20794079 MS.gene35022:CDS 50.0%
CAACGGAAATAGGTCATCGG+CGG + chr4.4:20794231-20794250 None:intergenic 50.0%
CCTTGAGCTCTTTGATCTCG+GGG + chr4.4:20795157-20795176 None:intergenic 50.0%
CTAAAAGGAGCCCTTCTCCA+AGG - chr4.4:20796251-20796270 MS.gene35022:intron 50.0%
GAATAGAACTGCGTCGCACT+GGG + chr4.4:20796231-20796250 None:intergenic 50.0%
GCGTAAAAGACCTTCCACCA+CGG + chr4.4:20796438-20796457 None:intergenic 50.0%
GTCGCAGCAGGAGTTATGAT+AGG - chr4.4:20795963-20795982 MS.gene35022:intron 50.0%
GTGCATTCACCTTCTCTTGC+TGG + chr4.4:20795190-20795209 None:intergenic 50.0%
TAGAAGCCGAAGCAGATCAG+TGG - chr4.4:20796105-20796124 MS.gene35022:intron 50.0%
TAGCACTACGGCTTCTGCTT+CGG + chr4.4:20796033-20796052 None:intergenic 50.0%
TTCAGAGAAGGGCTCCTCTT+TGG + chr4.4:20796343-20796362 None:intergenic 50.0%
TTTGGAGAAGGGCTCCTCTT+TGG + chr4.4:20796307-20796326 None:intergenic 50.0%
! AAGGCTGTTGATAGGCTCGA+CGG - chr4.4:20794449-20794468 MS.gene35022:CDS 50.0%
! AAGGGCTCCTCTTTGGAGAA+GGG + chr4.4:20796318-20796337 None:intergenic 50.0%
! AAGGGCTCCTCTTTGGAGAT+GGG + chr4.4:20796300-20796319 None:intergenic 50.0%
! ATAATCGTAGCCGTGGTGGA+AGG - chr4.4:20796425-20796444 MS.gene35022:intron 50.0%
! ATGGGCTCCTCTTTGGAGAT+GGG + chr4.4:20796282-20796301 None:intergenic 50.0%
! CCTGGGGGAAACACTCTTTT+GGG + chr4.4:20796380-20796399 None:intergenic 50.0%
! CTGGGGGAAACACTCTTTTG+GGG + chr4.4:20796379-20796398 None:intergenic 50.0%
! CTTGGAGAAGGGCTCCTTTT+AGG + chr4.4:20796253-20796272 None:intergenic 50.0%
! GAAAGGACTGGTGAATCGAG+AGG - chr4.4:20794386-20794405 MS.gene35022:CDS 50.0%
! TACACTAGTCGAGGTGTCTC+TGG + chr4.4:20796654-20796673 None:intergenic 50.0%
! TCCTGGGGGAAACACTCTTT+TGG + chr4.4:20796381-20796400 None:intergenic 50.0%
! TGGGGGAAACACTCTTTTGG+GGG + chr4.4:20796378-20796397 None:intergenic 50.0%
! TTTGGAGATGGGCTCCTCTT+TGG + chr4.4:20796289-20796308 None:intergenic 50.0%
!! GAGTAGGTATCGGAGATGTC+TGG + chr4.4:20794090-20794109 None:intergenic 50.0%
!! TAGGTATCGGAGATGTCTGG+AGG + chr4.4:20794087-20794106 None:intergenic 50.0%
!! TCACGGAGTGGACTTTTCCT+GGG + chr4.4:20796397-20796416 None:intergenic 50.0%
!! TTCACGGAGTGGACTTTTCC+TGG + chr4.4:20796398-20796417 None:intergenic 50.0%
AAAGGAGCCCTTCTCCAAGG+AGG - chr4.4:20796254-20796273 MS.gene35022:intron 55.0%
ACAGACACCGTGGGAGAGAT+AGG - chr4.4:20795996-20796015 MS.gene35022:intron 55.0%
ACCTTCTCTTGCTGGGACTG+CGG + chr4.4:20795182-20795201 None:intergenic 55.0%
AGAAGCCGTAGTGCTAGTCC+TGG - chr4.4:20796037-20796056 MS.gene35022:intron 55.0%
AGAGGAGCCCATCTCCAAAG+AGG - chr4.4:20796290-20796309 MS.gene35022:intron 55.0%
AGAGGAGCCCTTCTCCAAAG+AGG - chr4.4:20796308-20796327 MS.gene35022:CDS 55.0%
AGCAGCAGGTACACTAGTCG+AGG + chr4.4:20796663-20796682 None:intergenic 55.0%
ATGGGCTCCTCCTTGGAGAA+GGG + chr4.4:20796264-20796283 None:intergenic 55.0%
CAGACACCGTGGGAGAGATA+GGG - chr4.4:20795997-20796016 MS.gene35022:intron 55.0%
CATGAACGTGACAGACACCG+TGG - chr4.4:20795986-20796005 MS.gene35022:intron 55.0%
CCACCACGGCTACGATTATC+AGG + chr4.4:20796424-20796443 None:intergenic 55.0%
CCCCGAGATCAAAGAGCTCA+AGG - chr4.4:20795154-20795173 MS.gene35022:intron 55.0%
CCTGATAATCGTAGCCGTGG+TGG - chr4.4:20796421-20796440 MS.gene35022:intron 55.0%
GATGGTCCCTATCTCTCCCA+CGG + chr4.4:20796006-20796025 None:intergenic 55.0%
GGAATAGAACTGCGTCGCAC+TGG + chr4.4:20796232-20796251 None:intergenic 55.0%
GTCGAGCCTATCAACAGCCT+TGG + chr4.4:20794450-20794469 None:intergenic 55.0%
TGGTTACAAGGGCCGTGGAA+GGG - chr4.4:20796057-20796076 MS.gene35022:intron 55.0%
! AGAGGAGCCCTTCTCTGAAG+AGG - chr4.4:20796344-20796363 MS.gene35022:CDS 55.0%
! GAAGGGCTCCTCTTTGGAGA+AGG + chr4.4:20796301-20796320 None:intergenic 55.0%
! GAAGGGCTCCTCTTTGGAGA+TGG + chr4.4:20796301-20796320 None:intergenic 55.0%
! GATGGGCTCCTCTTTGGAGA+TGG + chr4.4:20796283-20796302 None:intergenic 55.0%
! GGGGGAAACACTCTTTTGGG+GGG + chr4.4:20796377-20796396 None:intergenic 55.0%
! TCTTTTACGCCTCGCAGTCC+TGG - chr4.4:20796448-20796467 MS.gene35022:intron 55.0%
! TTTGGAGATGGGCTCCTCCT+TGG + chr4.4:20796271-20796290 None:intergenic 55.0%
!! ACGGAGTGGACTTTTCCTGG+GGG + chr4.4:20796395-20796414 None:intergenic 55.0%
!! CACGGAGTGGACTTTTCCTG+GGG + chr4.4:20796396-20796415 None:intergenic 55.0%
!! CCCAAAAGAGTGTTTCCCCC+AGG - chr4.4:20796377-20796396 MS.gene35022:intron 55.0%
ACAGGAGGAGAAGTCGCAGC+AGG - chr4.4:20795951-20795970 MS.gene35022:intron 60.0%
AGTCCTGGTTACAAGGGCCG+TGG - chr4.4:20796052-20796071 MS.gene35022:intron 60.0%
CGGAAATAGGTCATCGGCGG+TGG + chr4.4:20794228-20794247 None:intergenic 60.0%
CTGGTTACAAGGGCCGTGGA+AGG - chr4.4:20796056-20796075 MS.gene35022:intron 60.0%
CTTCCACGGCCCTTGTAACC+AGG + chr4.4:20796058-20796077 None:intergenic 60.0%
GCCGAAGCAGATCAGTGGAC+AGG - chr4.4:20796110-20796129 MS.gene35022:intron 60.0%
GGAGGAGCCCATCTCCAAAG+AGG - chr4.4:20796272-20796291 MS.gene35022:intron 60.0%
GGTTACAAGGGCCGTGGAAG+GGG - chr4.4:20796058-20796077 MS.gene35022:intron 60.0%
GTTACAAGGGCCGTGGAAGG+GGG - chr4.4:20796059-20796078 MS.gene35022:intron 60.0%
! GATGGGCTCCTCCTTGGAGA+AGG + chr4.4:20796265-20796284 None:intergenic 60.0%
AACTGCGTCGCACTGGGGAG+CGG + chr4.4:20796225-20796244 None:intergenic 65.0%
CATCATGGCGCCCCCTTCCA+CGG + chr4.4:20796072-20796091 None:intergenic 65.0%
GCCGCAGTCCCAGCAAGAGA+AGG - chr4.4:20795178-20795197 MS.gene35022:intron 65.0%
GGCTTCTGCTTCGGCGACGA+TGG + chr4.4:20796024-20796043 None:intergenic 65.0%
TCATCGGCGGTGGTGCCTAG+AGG + chr4.4:20794218-20794237 None:intergenic 65.0%
!! CGAGAAGCACCAGGACTGCG+AGG + chr4.4:20796460-20796479 None:intergenic 65.0%
!! GAGGGGCTTCGAGAAGCACC+AGG + chr4.4:20796469-20796488 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 20794060 20796703 20794060 ID=MS.gene35022
chr4.4 mRNA 20794060 20796703 20794060 ID=MS.gene35022.t1;Parent=MS.gene35022
chr4.4 exon 20796628 20796703 20796628 ID=MS.gene35022.t1.exon1;Parent=MS.gene35022.t1
chr4.4 CDS 20796628 20796703 20796628 ID=cds.MS.gene35022.t1;Parent=MS.gene35022.t1
chr4.4 exon 20796463 20796541 20796463 ID=MS.gene35022.t1.exon2;Parent=MS.gene35022.t1
chr4.4 CDS 20796463 20796541 20796463 ID=cds.MS.gene35022.t1;Parent=MS.gene35022.t1
chr4.4 exon 20796293 20796372 20796293 ID=MS.gene35022.t1.exon3;Parent=MS.gene35022.t1
chr4.4 CDS 20796293 20796372 20796293 ID=cds.MS.gene35022.t1;Parent=MS.gene35022.t1
chr4.4 exon 20796137 20796203 20796137 ID=MS.gene35022.t1.exon4;Parent=MS.gene35022.t1
chr4.4 CDS 20796137 20796203 20796137 ID=cds.MS.gene35022.t1;Parent=MS.gene35022.t1
chr4.4 exon 20795564 20795635 20795564 ID=MS.gene35022.t1.exon5;Parent=MS.gene35022.t1
chr4.4 CDS 20795564 20795635 20795564 ID=cds.MS.gene35022.t1;Parent=MS.gene35022.t1
chr4.4 exon 20794632 20794841 20794632 ID=MS.gene35022.t1.exon6;Parent=MS.gene35022.t1
chr4.4 CDS 20794632 20794841 20794632 ID=cds.MS.gene35022.t1;Parent=MS.gene35022.t1
chr4.4 exon 20794317 20794541 20794317 ID=MS.gene35022.t1.exon7;Parent=MS.gene35022.t1
chr4.4 CDS 20794317 20794541 20794317 ID=cds.MS.gene35022.t1;Parent=MS.gene35022.t1
chr4.4 exon 20794060 20794138 20794060 ID=MS.gene35022.t1.exon8;Parent=MS.gene35022.t1
chr4.4 CDS 20794060 20794138 20794060 ID=cds.MS.gene35022.t1;Parent=MS.gene35022.t1
Gene Sequence

>MS.gene35022

ATGTCTCACTTCGGTAGGTCAGGTCCTCCAGACATCTCCGATACCTACTCTCTCCTTGTTCTCAACATCACCTTCCGTAAGCGAAACCCTTTTCTCTCTTCTCTCTCTGTTTTCTCTTATCTTTAACCTAATTAACCTAACACTCTGTTTTTCTTCCTCTAGGCACCACCGCCGATGACCTATTTCCGTTGTTTGATAAGTATGGCAAGGTTGTTGACATCTTTATCCCCAAAGATCGAAGGTATTCAAAAAGTTTTATTTTTTCAATTTCCCCCAATTTTTCATTTATCAAATTATTTATTTATTGAAATTTTCTTGTATTTTTTGAAAGGACTGGTGAATCGAGAGGTTTCGCTTTTGTGCGTTACAAATATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGTATATGCTTCTTGTTAATTCATTTCATTTATTTAAAAAAAAAAGGGTTTTTTTTGTATGAATTTAAAAGAAACGATTGATTTTTTCAGGGAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGCCCTAATGCTGAGAGGATGTAAGTTTTATTCTTATTTTTCATTTTTGTTATGATGGTGCTGTTATTGTTATGTCAAATTAAAAATTTACCTTGATTTTCTATATCATGATGTTTATATAACGAGGTCAAACTAAGTGTGTGTTTGTTCATAAAAATTGATTTTGAATGAATTGATTTTAGTTAAAATTGAGTTCAATGCCACGTGGTTTATGTTTGAGTTAAACAGTAAATTTGAGTGTAAAAATTGTGGTTTGAGTCTAAAGCTACAAACACTAGCTTCAAGTTTGAATGAAATGTAGAGGCAAAGTCAGTTTTACAACTCTACAATCAATTTTATCTTATTGTTAATTGAAACCAAACACACACTGAGTAACCCTGTCGAATAGATTTAGTTTGAGTTTGAATACAATAGCCTTATTCAGTTGCATACTGATATTGGATGCTGGTTAATATTTTTCTAATTGATTTTTTTTTTTTTGTGCAATTGTATGTAGCTAAGTTTATTTATTTTATTTACAGTCAGAAAGGAAGGATTATCGAAACATCCCCGAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAAGAGAAGGTGAATGCACTTTTTAATGTCCTGTCCTTGTTGCTTATAGAGTGTTGTGGATGTAGGAGAGTTTTGGTGGCTGCTATTTTGTGATGAGTGATGTTTCAACTACATGCGATTCTTGTTTTTTGTTTTCAATGTTCAGAGTGATCATTGAATTTTATGGCTGAAACCATTTCTAGGATTTTCAATGATACAGTTGATGCATTTATATGATGCTCAATCAAACTTGTATCTTGCAGTTTGATTCTGCTTCTTAAGGAGGGGATAATGTGACCTCTTAAATTTAAGCATGTTAATTTGTCTAATCAGTAAAACCCCACAGCTTATATTATGGTGTCTGGCGCCATGCTTGTAGATATCCTAAACTGTACTTCTAATTGAAGTTGTCTTTTGTTGACTTTTGGTAGGCTCTTTGAATGTCTTCTTTCATATCTGCCATTGTAATCGTGCTTGTAGATATCCGAAACTGTACTTCTAATTGAAATTGTCTTTTGTTGACTTTTGGTAGGCTCTGTGAATGTCTTCTTTCATATCTGCCATTGTAATGTACAGTAGTAAACATTCCAATTATCAATTGGTTGATATGCTCAATGGGATCTTATGTGTTGTTTTTGGTATTTTCTTATGTTAATACTTATTAAAATTCACTTCTCGTACCCAGTGGTGTTTTGACATTCTTGATTGACTTCGATAGAAATTTGTATTGACTAATGTCTAATTGTTTGTAGGCACCGTGATGACTACAAAGAAAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGCATGAACGTGACAGACACCGTGGGAGAGATAGGGACCATCGTCGCCGAAGCAGAAGCCGTAGTGCTAGTCCTGGTTACAAGGGCCGTGGAAGGGGGCGCCATGATGATGAGCGTCGTAGTAGAAGCCGAAGCAGATCAGTGGACAGGTCTTCATTCATTGACATTTGAGCTTTTCAGCTGTGATTTTTCACCACCATAATTATTGTTATTTGAGCCTTTTTTGTTATTCTCAACAGCCGCTCCCCAGTGCGACGCAGTTCTATTCCTAAAAGGAGCCCTTCTCCAAGGAGGAGCCCATCTCCAAAGAGGAGCCCATCTCCAAAGAGGAGCCCTTCTCCAAAGAGGAGCCCTTCTCCAAAGAGGAGCCCTTCTCTGAAGAGGAGCATATCCCCCCAAAAGAGTGTTTCCCCCAGGAAAAGTCCACTCCGTGAAAGTCCTGATAATCGTAGCCGTGGTGGAAGGTCTTTTACGCCTCGCAGTCCTGGTGCTTCTCGAAGCCCCTCTCCTCGAAATTCAAATGGTGATGTAAGTAAAGTAATCTTATTCTTGAACTTAATAATGGATCAAAAAGCCATCTTGGCTATCAAATAGGAATTTTTTTAACCTTTTGCAACCGCTCAATTCTATTTACATTTGCAGGAATAAGCTGTTCTTCATAAAGTATTCCAGAGACACCTCGACTAGTGTACCTGCTGCTGTCTTCGATAATATTGGATGA

Protein sequence

>MS.gene35022.t1

MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSKRRHRDDYKEKDYRRRSRSRSYDRHERDRHRGRDRDHRRRSRSRSASPGYKGRGRGRHDDERRSRSRSRSVDSRSPVRRSSIPKRSPSPRRSPSPKRSPSPKRSPSPKRSPSPKRSPSLKRSISPQKSVSPRKSPLRESPDNRSRGGRNKLFFIKYSRDTSTSVPAAVFDNIG