AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90884

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90884.t1 MTR_1g116530 92.031 389 27 3 1 389 137 521 0.0 712
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90884.t1 AT1G54380 39.487 390 151 9 1 386 204 512 5.84e-73 236
MS.gene90884.t1 AT2G42510 39.560 182 49 5 1 181 388 509 2.52e-27 114
MS.gene90884.t1 AT2G42510 62.500 88 31 2 95 181 405 491 7.71e-26 109

Find 92 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCAGAGGCCTGCGTTTC+AGG 0.095865 1.1:+82073068 MS.gene90884:CDS
ACAATTTCGGGGAGATATTT+TGG 0.150062 1.1:+82074135 MS.gene90884:CDS
AATATATTGGCTACAATTTC+GGG 0.157564 1.1:+82074123 MS.gene90884:CDS
AAGTTACCTGGAAATAATTT+TGG 0.208567 1.1:+82073697 MS.gene90884:CDS
GAATATATTGGCTACAATTT+CGG 0.218549 1.1:+82074122 MS.gene90884:CDS
TCTCTCAGCAGCACAAATTC+TGG 0.272998 1.1:+82071878 MS.gene90884:CDS
GGTTCAAGTGCCACGCATTC+TGG 0.282581 1.1:+82073649 MS.gene90884:CDS
GAACGACAATTCATGGAAAT+TGG 0.288736 1.1:+82072919 MS.gene90884:CDS
GGTGGACCAGAATCAAAATT+AGG 0.292136 1.1:-82073102 None:intergenic
AGTTTGGATACCTTCACTTT+AGG 0.303255 1.1:-82073363 None:intergenic
GAATAATGAACGACAATTCA+TGG 0.329973 1.1:+82072912 MS.gene90884:CDS
ATCACTCCAAAATTATTTCC+AGG 0.334285 1.1:-82073703 None:intergenic
TCTTTAGCAGTCAAGTTAGT+AGG 0.341512 1.1:-82073778 None:intergenic
AGATATTCCCATCCGTCTTC+TGG 0.348856 1.1:-82073123 None:intergenic
AAGTTTACTTCTATCAAGTT+TGG 0.350512 1.1:-82073379 None:intergenic
TCAGGACACTTGGCAATATC+AGG 0.356178 1.1:-82073435 None:intergenic
ACTTGGCAATATCAGGAATC+TGG 0.365174 1.1:-82073428 None:intergenic
GGTTGTAATGTTGAATATAT+TGG 0.370085 1.1:+82074110 MS.gene90884:CDS
CCGTGCTGGTAAAGCTGAAC+TGG 0.379253 1.1:+82074080 MS.gene90884:CDS
AAGACGGATGGGAATATCTT+AGG 0.380050 1.1:+82073127 MS.gene90884:CDS
GGGAATATCTTAGGCGTGTC+AGG 0.399604 1.1:+82073136 MS.gene90884:CDS
AGGCCTGCGTTTCAGGTAGA+TGG 0.401054 1.1:+82073075 MS.gene90884:CDS
ACATCCTCCCATTGTTTCAA+TGG 0.401833 1.1:-82073468 None:intergenic
GTGAGAATTGGTTTCTTGTT+GGG 0.410292 1.1:-82072009 None:intergenic
CTACCTGAAACGCAGGCCTC+TGG 0.413678 1.1:-82073071 None:intergenic
GAGTACTAACCAGTGAGAAT+TGG 0.421352 1.1:-82072021 None:intergenic
CTTATTTCCTCAAAGTTACC+TGG 0.429187 1.1:+82073685 MS.gene90884:CDS
CCCCTGCTTTCAACAATCCT+AGG 0.446314 1.1:+82073877 MS.gene90884:CDS
ATTATTTCCAGGTAACTTTG+AGG 0.459577 1.1:-82073692 None:intergenic
TTCAATGGCAACAGATGCTC+AGG 0.464041 1.1:-82073453 None:intergenic
CTTGGCAATATCAGGAATCT+GGG 0.464802 1.1:-82073427 None:intergenic
AGTGAGAATTGGTTTCTTGT+TGG 0.480721 1.1:-82072010 None:intergenic
TCCCTAGGATTGTTGAAAGC+AGG 0.480836 1.1:-82073879 None:intergenic
TGAGGATAGCACCGTGCCTC+CGG 0.486698 1.1:+82073801 MS.gene90884:CDS
ATAAGACTATGAGTATAAGA+AGG 0.488171 1.1:-82072964 None:intergenic
CAGAATCTGTCACGTATTGA+AGG 0.488568 1.1:+82073628 MS.gene90884:intron
CAACAGATGCTCAGGACACT+TGG 0.502613 1.1:-82073445 None:intergenic
CATAGTCTTATAAGTAAGCA+TGG 0.512873 1.1:+82072976 MS.gene90884:CDS
CTTTCAGGTGCAGTGTATTG+TGG 0.521928 1.1:+82072883 MS.gene90884:intron
ATCTGTTGCCATTGAAACAA+TGG 0.523105 1.1:+82073460 MS.gene90884:CDS
TCTGTTGCCATTGAAACAAT+GGG 0.525124 1.1:+82073461 MS.gene90884:CDS
CTTCATAATAACACGAGCAT+TGG 0.532195 1.1:+82073742 MS.gene90884:CDS
GATTGTTGAAAGCAGGGGAG+TGG 0.532703 1.1:-82073872 None:intergenic
CACACTTCCGCAGCAGACTC+CGG 0.533825 1.1:-82074050 None:intergenic
GTTGTTGTTGTGAGCAGCGG+CGG 0.534294 1.1:-82071962 None:intergenic
CCCTAGGATTGTTGAAAGCA+GGG 0.537138 1.1:-82073878 None:intergenic
TTTCAGCAACATTGAGACTC+GGG 0.544817 1.1:-82073914 None:intergenic
CGACAATTCATGGAAATTGG+TGG 0.550323 1.1:+82072922 MS.gene90884:CDS
TTGTTGGGAAGGAACGGAAG+AGG 0.550366 1.1:-82071994 None:intergenic
GAATTGGTTTCTTGTTGGGA+AGG 0.550414 1.1:-82072005 None:intergenic
CTGGTCCACCAGAAGACGGA+TGG 0.561101 1.1:+82073115 MS.gene90884:CDS
TAATAACACGAGCATTGGTA+AGG 0.562700 1.1:+82073747 MS.gene90884:CDS
TGCTGATGAGTATGATACAT+TGG 0.568733 1.1:+82071933 MS.gene90884:CDS
CCCTGCTTTCAACAATCCTA+GGG 0.569746 1.1:+82073878 MS.gene90884:CDS
GCACAAGTGTCTGCATCTAG+TGG 0.569910 1.1:-82074021 None:intergenic
CTGCACTCCGGAGTCTGCTG+CGG 0.570655 1.1:+82074043 MS.gene90884:CDS
AACAAGAAACCAATTCTCAC+TGG 0.572694 1.1:+82072012 MS.gene90884:CDS
TATTCCCATCCGTCTTCTGG+TGG 0.573091 1.1:-82073120 None:intergenic
TACAGGATTCTCCGGAGGCA+CGG 0.575594 1.1:-82073812 None:intergenic
GTTTCAGCAACATTGAGACT+CGG 0.575650 1.1:-82073915 None:intergenic
GGTTTCTTGTTGGGAAGGAA+CGG 0.577664 1.1:-82072000 None:intergenic
GATTCTGGTCCACCAGAAGA+CGG 0.580030 1.1:+82073111 MS.gene90884:CDS
GCGAGATGATGGAGTCTATG+AGG 0.581842 1.1:+82071845 None:intergenic
TTGTAGATTGCCAGAATGCG+TGG 0.584277 1.1:-82073659 None:intergenic
AAGTGTGCTAGCATCCGTGC+TGG 0.589286 1.1:+82074066 MS.gene90884:CDS
TAAGACTATGAGTATAAGAA+GGG 0.591244 1.1:-82072963 None:intergenic
TCTTTACTTGCCTAGGTGGG+AGG 0.592344 1.1:+82073329 MS.gene90884:intron
CCAGTTCAGCTTTACCAGCA+CGG 0.594914 1.1:-82074080 None:intergenic
GCTTTCAACAATCCTAGGGA+TGG 0.595935 1.1:+82073882 MS.gene90884:CDS
CAGACACTTGTGCTGCACTC+CGG 0.597128 1.1:+82074031 MS.gene90884:CDS
TCTCCATCTACCTGAAACGC+AGG 0.598704 1.1:-82073078 None:intergenic
TCCTGTATTGAAAACATCCG+TGG 0.601385 1.1:+82073828 MS.gene90884:CDS
CATGCAATCAATTCTTGTGA+TGG 0.606582 1.1:-82073965 None:intergenic
TCACAAGAATTGATTGCATG+TGG 0.606890 1.1:+82073968 MS.gene90884:CDS
ATAGTCTTATAAGTAAGCAT+GGG 0.622205 1.1:+82072977 MS.gene90884:CDS
ATATCAAATTCCTAAAGTGA+AGG 0.623520 1.1:+82073353 MS.gene90884:CDS
GAGTATAAGAAGGGTCAACA+TGG 0.624659 1.1:-82072954 None:intergenic
TGGTCCACCAGAAGACGGAT+GGG 0.631512 1.1:+82073116 MS.gene90884:CDS
TAACTTGACTGCTAAAGATG+AGG 0.640802 1.1:+82073783 MS.gene90884:CDS
TGATAGAAGTAAACTTAACA+AGG 0.642496 1.1:+82073386 MS.gene90884:CDS
CCTAGGATTGTTGAAAGCAG+GGG 0.642812 1.1:-82073877 None:intergenic
GGGCTACAGAGTCCATCCCT+AGG 0.642846 1.1:-82073894 None:intergenic
ACGGTTGTTGTTGTGAGCAG+CGG 0.643869 1.1:-82071965 None:intergenic
ATGATTATGCTAGCATCCAG+AGG 0.651012 1.1:+82073055 MS.gene90884:CDS
TTCAATACAGGATTCTCCGG+AGG 0.653479 1.1:-82073817 None:intergenic
TAAAGCTGAACTGGATGATG+AGG 0.657096 1.1:+82074089 MS.gene90884:CDS
GCTGCTACTAGTTTGATCCA+CGG 0.659357 1.1:-82073845 None:intergenic
ATATATTGGCTACAATTTCG+GGG 0.666684 1.1:+82074124 MS.gene90884:CDS
GGAACGGAAGAGGAGTGTGA+CGG 0.680159 1.1:-82071984 None:intergenic
TTGGCAATATCAGGAATCTG+GGG 0.686299 1.1:-82073426 None:intergenic
AGCAAAAGCAGATTGAAGCG+CGG 0.711511 1.1:-82071914 None:intergenic
GTTGCCATTGAAACAATGGG+AGG 0.779901 1.1:+82073464 MS.gene90884:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAGAAAGAAAAAAAA+TGG - chr1.1:82072520-82072539 None:intergenic 15.0%
!! TTAATAATACAAACACAATA+TGG - chr1.1:82072136-82072155 None:intergenic 15.0%
!! TTGTTTAATAGTATATACTA+AGG + chr1.1:82073575-82073594 MS.gene90884:intron 15.0%
!! ATGAAAACTCAATAATAATC+AGG - chr1.1:82072761-82072780 None:intergenic 20.0%
!! TTAAAGCATAAATTGATCAA+AGG - chr1.1:82073195-82073214 None:intergenic 20.0%
!!! GCAATTAAGTTTTACATATT+TGG - chr1.1:82072298-82072317 None:intergenic 20.0%
!!! TTTCTTTCTTTTTTGTACTT+AGG + chr1.1:82072525-82072544 MS.gene90884:intron 20.0%
! AAAAAATCAGAATAGCAGAA+AGG - chr1.1:82072218-82072237 None:intergenic 25.0%
! AAGTTTACTTCTATCAAGTT+TGG - chr1.1:82073382-82073401 None:intergenic 25.0%
! AATAACAAAATTGGGAAACA+AGG - chr1.1:82073607-82073626 None:intergenic 25.0%
! ATAACAAAATTGGGAAACAA+GGG - chr1.1:82073606-82073625 None:intergenic 25.0%
! ATAAGACTATGAGTATAAGA+AGG - chr1.1:82072967-82072986 None:intergenic 25.0%
! ATATCAAATTCCTAAAGTGA+AGG + chr1.1:82073353-82073372 MS.gene90884:CDS 25.0%
! GGTTGTAATGTTGAATATAT+TGG + chr1.1:82074110-82074129 MS.gene90884:CDS 25.0%
! TAAGACTATGAGTATAAGAA+GGG - chr1.1:82072966-82072985 None:intergenic 25.0%
! TCTTCATGATAACTTTATCT+AGG + chr1.1:82073225-82073244 MS.gene90884:intron 25.0%
! TCTTTGCTTCTAATTTCATT+GGG + chr1.1:82072190-82072209 MS.gene90884:intron 25.0%
! TGATAGAAGTAAACTTAACA+AGG + chr1.1:82073386-82073405 MS.gene90884:CDS 25.0%
! TTCTTTGCTTCTAATTTCAT+TGG + chr1.1:82072189-82072208 MS.gene90884:intron 25.0%
!! AAGTTACCTGGAAATAATTT+TGG + chr1.1:82073697-82073716 MS.gene90884:CDS 25.0%
!! AATATATTGGCTACAATTTC+GGG + chr1.1:82074123-82074142 MS.gene90884:CDS 25.0%
!! GAATATATTGGCTACAATTT+CGG + chr1.1:82074122-82074141 MS.gene90884:CDS 25.0%
!! GTAAATTTGAAACACTACTT+AGG + chr1.1:82072620-82072639 MS.gene90884:intron 25.0%
!! GTCAATTTGATGTTTTCAAT+TGG + chr1.1:82072369-82072388 MS.gene90884:intron 25.0%
!!! AGATTCTGGAATAACAAAAT+TGG - chr1.1:82073616-82073635 None:intergenic 25.0%
!!! ATAGTCTTATAAGTAAGCAT+GGG + chr1.1:82072977-82072996 MS.gene90884:CDS 25.0%
!!! GATTCTGGAATAACAAAATT+GGG - chr1.1:82073615-82073634 None:intergenic 25.0%
!!! TTCTGCTATTCTGATTTTTT+TGG + chr1.1:82072218-82072237 MS.gene90884:intron 25.0%
ACTCATTCTTGAAAGTTCAA+TGG - chr1.1:82072445-82072464 None:intergenic 30.0%
AGACTTTCAGCTTATGAAAA+TGG - chr1.1:82072855-82072874 None:intergenic 30.0%
ATCACTCCAAAATTATTTCC+AGG - chr1.1:82073706-82073725 None:intergenic 30.0%
ATTATTTCCAGGTAACTTTG+AGG - chr1.1:82073695-82073714 None:intergenic 30.0%
GAATAATGAACGACAATTCA+TGG + chr1.1:82072912-82072931 MS.gene90884:CDS 30.0%
GACTTTCAGCTTATGAAAAT+GGG - chr1.1:82072854-82072873 None:intergenic 30.0%
TTTGGATAAAGTGCAATGTT+TGG + chr1.1:82072236-82072255 MS.gene90884:intron 30.0%
! AGAATTTTCAGTACTAAGAG+AGG + chr1.1:82073500-82073519 MS.gene90884:CDS 30.0%
! ATATATTGGCTACAATTTCG+GGG + chr1.1:82074124-82074143 MS.gene90884:CDS 30.0%
! GATAACTTTATCTAGGATTC+TGG + chr1.1:82073232-82073251 MS.gene90884:intron 30.0%
! TTTGATGTTTTCAATTGGAC+AGG + chr1.1:82072374-82072393 MS.gene90884:intron 30.0%
!! AAAGTCTTGTTATTGCTTTC+AGG + chr1.1:82072868-82072887 MS.gene90884:intron 30.0%
!! AACGTGTTATTTCTACTACT+AGG - chr1.1:82073301-82073320 None:intergenic 30.0%
!! CATAGTCTTATAAGTAAGCA+TGG + chr1.1:82072976-82072995 MS.gene90884:CDS 30.0%
!! GATTCTGGTTTGTTAAATGA+CGG + chr1.1:82073247-82073266 MS.gene90884:intron 30.0%
!! TGTTATTTCTACTACTAGGA+AGG - chr1.1:82073297-82073316 None:intergenic 30.0%
AAACAACAAAGCAATCCTCA+TGG - chr1.1:82072660-82072679 None:intergenic 35.0%
AACAACAAAGCAATCCTCAT+GGG - chr1.1:82072659-82072678 None:intergenic 35.0%
AACAAGAAACCAATTCTCAC+TGG + chr1.1:82072012-82072031 MS.gene90884:CDS 35.0%
AGTTTGGATACCTTCACTTT+AGG - chr1.1:82073366-82073385 None:intergenic 35.0%
ATCTGTTGCCATTGAAACAA+TGG + chr1.1:82073460-82073479 MS.gene90884:CDS 35.0%
CAAGATTCACGATTCTAGAT+AGG - chr1.1:82072165-82072184 None:intergenic 35.0%
CATGCAATCAATTCTTGTGA+TGG - chr1.1:82073968-82073987 None:intergenic 35.0%
CTTAAACTCTTTACTTGCCT+AGG + chr1.1:82073322-82073341 MS.gene90884:intron 35.0%
CTTATTTCCTCAAAGTTACC+TGG + chr1.1:82073685-82073704 MS.gene90884:CDS 35.0%
CTTCATAATAACACGAGCAT+TGG + chr1.1:82073742-82073761 MS.gene90884:CDS 35.0%
GAACGACAATTCATGGAAAT+TGG + chr1.1:82072919-82072938 MS.gene90884:CDS 35.0%
TAACTTGACTGCTAAAGATG+AGG + chr1.1:82073783-82073802 MS.gene90884:CDS 35.0%
TCACAAGAATTGATTGCATG+TGG + chr1.1:82073968-82073987 MS.gene90884:CDS 35.0%
TCTGTTGCCATTGAAACAAT+GGG + chr1.1:82073461-82073480 MS.gene90884:CDS 35.0%
TCTTTAGCAGTCAAGTTAGT+AGG - chr1.1:82073781-82073800 None:intergenic 35.0%
TGCTGATGAGTATGATACAT+TGG + chr1.1:82071933-82071952 MS.gene90884:CDS 35.0%
TTCAAGAATGAGTCAGCAAA+GGG + chr1.1:82072452-82072471 MS.gene90884:intron 35.0%
TTTCAAGAATGAGTCAGCAA+AGG + chr1.1:82072451-82072470 MS.gene90884:intron 35.0%
! ACAATTTCGGGGAGATATTT+TGG + chr1.1:82074135-82074154 MS.gene90884:CDS 35.0%
! AGTGAGAATTGGTTTCTTGT+TGG - chr1.1:82072013-82072032 None:intergenic 35.0%
! GTGAGAATTGGTTTCTTGTT+GGG - chr1.1:82072012-82072031 None:intergenic 35.0%
! GTTTTCAATACAGGATTCTC+CGG - chr1.1:82073823-82073842 None:intergenic 35.0%
! TGATGATGATGATGATAGTG+AGG + chr1.1:82073032-82073051 MS.gene90884:CDS 35.0%
! TTGCAGTTAGATCTTTTTCC+AGG - chr1.1:82072480-82072499 None:intergenic 35.0%
!! ATTCTTGTGATGGTGTTTTC+AGG - chr1.1:82073958-82073977 None:intergenic 35.0%
!! TAATAACACGAGCATTGGTA+AGG + chr1.1:82073747-82073766 MS.gene90884:CDS 35.0%
!! TAGTGTTCTAGAACTCATCT+CGG + chr1.1:82073525-82073544 MS.gene90884:intron 35.0%
!! TTATGAAAATGGGTTGAAGC+TGG - chr1.1:82072844-82072863 None:intergenic 35.0%
!!! GGAGAACCTAATTTTGATTC+TGG + chr1.1:82073096-82073115 MS.gene90884:CDS 35.0%
AAACTCTTTACTTGCCTAGG+TGG + chr1.1:82073325-82073344 MS.gene90884:intron 40.0%
AACTCTTTACTTGCCTAGGT+GGG + chr1.1:82073326-82073345 MS.gene90884:intron 40.0%
AAGACGGATGGGAATATCTT+AGG + chr1.1:82073127-82073146 MS.gene90884:CDS 40.0%
ACAAAGAAGCCTACAACACA+TGG - chr1.1:82072602-82072621 None:intergenic 40.0%
ACATCCTCCCATTGTTTCAA+TGG - chr1.1:82073471-82073490 None:intergenic 40.0%
ACTTGGCAATATCAGGAATC+TGG - chr1.1:82073431-82073450 None:intergenic 40.0%
ATGATTATGCTAGCATCCAG+AGG + chr1.1:82073055-82073074 MS.gene90884:CDS 40.0%
CACAATATGAGCTAACAAGC+AGG - chr1.1:82072350-82072369 None:intergenic 40.0%
CAGAATCTGTCACGTATTGA+AGG + chr1.1:82073628-82073647 MS.gene90884:intron 40.0%
CATGAAAAGCCATGTGTTGT+AGG + chr1.1:82072590-82072609 MS.gene90884:intron 40.0%
CGACAATTCATGGAAATTGG+TGG + chr1.1:82072922-82072941 MS.gene90884:CDS 40.0%
CTCAGAAACACACACACATA+TGG - chr1.1:82072106-82072125 None:intergenic 40.0%
CTTCAATACGTGACAGATTC+TGG - chr1.1:82073630-82073649 None:intergenic 40.0%
CTTGGCAATATCAGGAATCT+GGG - chr1.1:82073430-82073449 None:intergenic 40.0%
GACATATCTGCATCTTCCAT+TGG - chr1.1:82072411-82072430 None:intergenic 40.0%
GAGTACTAACCAGTGAGAAT+TGG - chr1.1:82072024-82072043 None:intergenic 40.0%
GAGTATAAGAAGGGTCAACA+TGG - chr1.1:82072957-82072976 None:intergenic 40.0%
GGTGGACCAGAATCAAAATT+AGG - chr1.1:82073105-82073124 None:intergenic 40.0%
GTTTCAGCAACATTGAGACT+CGG - chr1.1:82073918-82073937 None:intergenic 40.0%
TAAAGCTGAACTGGATGATG+AGG + chr1.1:82074089-82074108 MS.gene90884:CDS 40.0%
TCCTGTATTGAAAACATCCG+TGG + chr1.1:82073828-82073847 MS.gene90884:CDS 40.0%
TTGATCAAAGGACCAGCAAT+TGG - chr1.1:82073183-82073202 None:intergenic 40.0%
TTGGCAATATCAGGAATCTG+GGG - chr1.1:82073429-82073448 None:intergenic 40.0%
TTTCAGCAACATTGAGACTC+GGG - chr1.1:82073917-82073936 None:intergenic 40.0%
! AGAACTCATCTCGGTCTTTT+GGG + chr1.1:82073534-82073553 MS.gene90884:intron 40.0%
! GAATTGGTTTCTTGTTGGGA+AGG - chr1.1:82072008-82072027 None:intergenic 40.0%
! GTTTTCAATTGGACAGGTGT+GGG + chr1.1:82072380-82072399 MS.gene90884:intron 40.0%
! TAGAACTCATCTCGGTCTTT+TGG + chr1.1:82073533-82073552 MS.gene90884:intron 40.0%
! TCCACGGATGTTTTCAATAC+AGG - chr1.1:82073832-82073851 None:intergenic 40.0%
! TGTTTTCAATTGGACAGGTG+TGG + chr1.1:82072379-82072398 MS.gene90884:intron 40.0%
!! GTGCAATGTTTGGTAATGCA+AGG + chr1.1:82072246-82072265 MS.gene90884:intron 40.0%
AGATATTCCCATCCGTCTTC+TGG - chr1.1:82073126-82073145 None:intergenic 45.0%
AGCAAAAGCAGATTGAAGCG+CGG - chr1.1:82071917-82071936 None:intergenic 45.0%
ATTTGATATGCCTCCCACCT+AGG - chr1.1:82073342-82073361 None:intergenic 45.0%
CCCTAGGATTGTTGAAAGCA+GGG - chr1.1:82073881-82073900 None:intergenic 45.0%
CCCTGCTTTCAACAATCCTA+GGG + chr1.1:82073878-82073897 MS.gene90884:CDS 45.0%
CCTAGGATTGTTGAAAGCAG+GGG - chr1.1:82073880-82073899 None:intergenic 45.0%
CTAACAAGCAGGAGACTGTT+GGG - chr1.1:82072339-82072358 None:intergenic 45.0%
GCTTTCAACAATCCTAGGGA+TGG + chr1.1:82073882-82073901 MS.gene90884:CDS 45.0%
GGTTTCTTGTTGGGAAGGAA+CGG - chr1.1:82072003-82072022 None:intergenic 45.0%
GTTGCCATTGAAACAATGGG+AGG + chr1.1:82073464-82073483 MS.gene90884:CDS 45.0%
TCAGGACACTTGGCAATATC+AGG - chr1.1:82073438-82073457 None:intergenic 45.0%
TCCCTAGGATTGTTGAAAGC+AGG - chr1.1:82073882-82073901 None:intergenic 45.0%
TCTCTCAGCAGCACAAATTC+TGG + chr1.1:82071878-82071897 MS.gene90884:CDS 45.0%
TTCAATACAGGATTCTCCGG+AGG - chr1.1:82073820-82073839 None:intergenic 45.0%
TTCAATGGCAACAGATGCTC+AGG - chr1.1:82073456-82073475 None:intergenic 45.0%
TTGTAGATTGCCAGAATGCG+TGG - chr1.1:82073662-82073681 None:intergenic 45.0%
! CTTTCAGGTGCAGTGTATTG+TGG + chr1.1:82072883-82072902 MS.gene90884:intron 45.0%
! GCTGCTACTAGTTTGATCCA+CGG - chr1.1:82073848-82073867 None:intergenic 45.0%
AACTGTCAGCTGCCAATTGC+TGG + chr1.1:82073168-82073187 MS.gene90884:intron 50.0%
ATGAGTCAGCAAAGGGAACC+TGG + chr1.1:82072459-82072478 MS.gene90884:intron 50.0%
CAACAGATGCTCAGGACACT+TGG - chr1.1:82073448-82073467 None:intergenic 50.0%
CCAGTTCAGCTTTACCAGCA+CGG - chr1.1:82074083-82074102 None:intergenic 50.0%
CCCCTGCTTTCAACAATCCT+AGG + chr1.1:82073877-82073896 MS.gene90884:CDS 50.0%
GATTCTGGTCCACCAGAAGA+CGG + chr1.1:82073111-82073130 MS.gene90884:CDS 50.0%
GATTGTTGAAAGCAGGGGAG+TGG - chr1.1:82073875-82073894 None:intergenic 50.0%
GCACAAGTGTCTGCATCTAG+TGG - chr1.1:82074024-82074043 None:intergenic 50.0%
GCTAACAAGCAGGAGACTGT+TGG - chr1.1:82072340-82072359 None:intergenic 50.0%
GGGAATATCTTAGGCGTGTC+AGG + chr1.1:82073136-82073155 MS.gene90884:CDS 50.0%
GTCATACAGTAGCACCCATG+AGG + chr1.1:82072642-82072661 MS.gene90884:intron 50.0%
TATTCCCATCCGTCTTCTGG+TGG - chr1.1:82073123-82073142 None:intergenic 50.0%
TCTCCATCTACCTGAAACGC+AGG - chr1.1:82073081-82073100 None:intergenic 50.0%
TCTTTACTTGCCTAGGTGGG+AGG + chr1.1:82073329-82073348 MS.gene90884:intron 50.0%
TTGTTGGGAAGGAACGGAAG+AGG - chr1.1:82071997-82072016 None:intergenic 50.0%
! ACGGTTGTTGTTGTGAGCAG+CGG - chr1.1:82071968-82071987 None:intergenic 50.0%
AAGTGTGCTAGCATCCGTGC+TGG + chr1.1:82074066-82074085 MS.gene90884:CDS 55.0%
CAGACACTTGTGCTGCACTC+CGG + chr1.1:82074031-82074050 MS.gene90884:CDS 55.0%
GGTTCAAGTGCCACGCATTC+TGG + chr1.1:82073649-82073668 MS.gene90884:CDS 55.0%
TACAGGATTCTCCGGAGGCA+CGG - chr1.1:82073815-82073834 None:intergenic 55.0%
TGGTCCACCAGAAGACGGAT+GGG + chr1.1:82073116-82073135 MS.gene90884:CDS 55.0%
! AGGCCTGCGTTTCAGGTAGA+TGG + chr1.1:82073075-82073094 MS.gene90884:CDS 55.0%
! CCGTGCTGGTAAAGCTGAAC+TGG + chr1.1:82074080-82074099 MS.gene90884:CDS 55.0%
! GGAACGGAAGAGGAGTGTGA+CGG - chr1.1:82071987-82072006 None:intergenic 55.0%
! GTTGTTGTTGTGAGCAGCGG+CGG - chr1.1:82071965-82071984 None:intergenic 55.0%
CACACTTCCGCAGCAGACTC+CGG - chr1.1:82074053-82074072 None:intergenic 60.0%
CATCCAGAGGCCTGCGTTTC+AGG + chr1.1:82073068-82073087 MS.gene90884:CDS 60.0%
CTACCTGAAACGCAGGCCTC+TGG - chr1.1:82073074-82073093 None:intergenic 60.0%
CTGGTCCACCAGAAGACGGA+TGG + chr1.1:82073115-82073134 MS.gene90884:CDS 60.0%
GGGCTACAGAGTCCATCCCT+AGG - chr1.1:82073897-82073916 None:intergenic 60.0%
TGAGGATAGCACCGTGCCTC+CGG + chr1.1:82073801-82073820 MS.gene90884:CDS 60.0%
! ACAGGTGTGGGTGCTGCCAA+TGG + chr1.1:82072392-82072411 MS.gene90884:intron 60.0%
CTGCACTCCGGAGTCTGCTG+CGG + chr1.1:82074043-82074062 MS.gene90884:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 82071853 82074173 82071853 ID=MS.gene90884
chr1.1 mRNA 82071853 82074173 82071853 ID=MS.gene90884.t1;Parent=MS.gene90884
chr1.1 exon 82071853 82072033 82071853 ID=MS.gene90884.t1.exon1;Parent=MS.gene90884.t1
chr1.1 CDS 82071853 82072033 82071853 ID=cds.MS.gene90884.t1;Parent=MS.gene90884.t1
chr1.1 exon 82072890 82073157 82072890 ID=MS.gene90884.t1.exon2;Parent=MS.gene90884.t1
chr1.1 CDS 82072890 82073157 82072890 ID=cds.MS.gene90884.t1;Parent=MS.gene90884.t1
chr1.1 exon 82073344 82073521 82073344 ID=MS.gene90884.t1.exon3;Parent=MS.gene90884.t1
chr1.1 CDS 82073344 82073521 82073344 ID=cds.MS.gene90884.t1;Parent=MS.gene90884.t1
chr1.1 exon 82073631 82074173 82073631 ID=MS.gene90884.t1.exon4;Parent=MS.gene90884.t1
chr1.1 CDS 82073631 82074173 82073631 ID=cds.MS.gene90884.t1;Parent=MS.gene90884.t1
Gene Sequence

>MS.gene90884

ATGGAGTCTATGAGGTTTGTGAATGTCTCTCAGCAGCACAAATTCTGGAAAACAATCTACACCGCGCTTCAATCTGCTTTTGCTGATGAGTATGATACATTGGTCGTTGCCGCCGCTGCTCACAACAACAACCGTCACACTCCTCTTCCGTTCCTTCCCAACAAGAAACCAATTCTCACTGGTTAGTACTCTTTTTTTTTCTTTCTTTCTTTCTTGCACAATCATATTCGATTCTTTTGAATTCTTGATTCCATATGTGTGTGTGTTTCTGAGATTCACTCCATATTGTGTTTGTATTATTAATTTAAGCCTATCTAGAATCGTGAATCTTGATCATTCTTTGCTTCTAATTTCATTGGGAACCTTTCTGCTATTCTGATTTTTTTGGATAAAGTGCAATGTTTGGTAATGCAAGGATAATAAGTAATTCTTTGTAATGAAACCAAATATGTAAAACTTAATTGCTCTGATTTTTTTTGTGTGCCCAACAGTCTCCTGCTTGTTAGCTCATATTGTGTCAATTTGATGTTTTCAATTGGACAGGTGTGGGTGCTGCCAATGGAAGATGCAGATATGTCAATGTCTTTGTCCATTGAACTTTCAAGAATGAGTCAGCAAAGGGAACCTGGAAAAAGATCTAACTGCAACATTACTTCACTATGTTCCATTTTTTTTCTTTCTTTTTTGTACTTAGGCACTGATTTCAGTTGCATAGCTACTTGTATAAAGTCACTGTACATGAAAAGCCATGTGTTGTAGGCTTCTTTGTAAATTTGAAACACTACTTAGGTCATACAGTAGCACCCATGAGGATTGCTTTGTTGTTTACACTTGTATATTGTTCTTTTTTCAATAAAAAAGTTCATTTTTCTGTCTACATTGTGTTTGAATGATTACACTTTTTGCCTGATTATTATTGAGTTTTCATGTTATTGCTTTATAAAGTTCAATTTGATGTTATTGCTTGTTTGTGAATTATATTTTTATTCCAGCTTCAACCCATTTTCATAAGCTGAAAGTCTTGTTATTGCTTTCAGGTGCAGTGTATTGTGGAAATATGAATAATGAACGACAATTCATGGAAATTGGTGGAAGTGTGAGCCATGTTGACCCTTCTTATACTCATAGTCTTATAAGTAAGCATGGGTGCTCAGTTTCAGAAGAGTGCATTGAAAATGATGATGATGATGATGATAGTGAGGATGATTATGCTAGCATCCAGAGGCCTGCGTTTCAGGTAGATGGAGAACCTAATTTTGATTCTGGTCCACCAGAAGACGGATGGGAATATCTTAGGCGTGTCAGGTATTGTTGTAACTGTCAGCTGCCAATTGCTGGTCCTTTGATCAATTTATGCTTTAAAATTTTATTTTCTTCATGATAACTTTATCTAGGATTCTGGTTTGTTAAATGACGGTGAGTAGATAAAACTTCACTGTTTCCTTCCTAGTAGTAGAAATAACACGTTTCTTAAACTCTTTACTTGCCTAGGTGGGAGGCATATCAAATTCCTAAAGTGAAGGTATCCAAACTTGATAGAAGTAAACTTAACAAGGAGCAAAGTGCTTATATGCCCCAGATTCCTGATATTGCCAAGTGTCCTGAGCATCTGTTGCCATTGAAACAATGGGAGGATGTATTTCTTGCAGAATTTTCAGTACTAAGAGAGGTATAGTGTTCTAGAACTCATCTCGGTCTTTTGGGAGTGAAGTGTGCTGATTTTTGTTTAATAGTATATACTAAGGACTGACCCTTGTTTCCCAATTTTGTTATTCCAGAATCTGTCACGTATTGAAGGTTCAAGTGCCACGCATTCTGGCAATCTACAATCTCTTATTTCCTCAAAGTTACCTGGAAATAATTTTGGAGTGATGAACAGAGATGTGCTACTTCATAATAACACGAGCATTGGTAAGGCTGATCAACCTACTAACTTGACTGCTAAAGATGAGGATAGCACCGTGCCTCCGGAGAATCCTGTATTGAAAACATCCGTGGATCAAACTAGTAGCAGCTGTTCCACTCCCCTGCTTTCAACAATCCTAGGGATGGACTCTGTAGCCCGAGTCTCAATGTTGCTGAAACGAATTCGTTTGCTAGAGCCTGAAAACACCATCACAAGAATTGATTGCATGTGGCTTTTTGCTCTCTGTGCAGCAGTAGATGCTCCACTAGATGCAGACACTTGTGCTGCACTCCGGAGTCTGCTGCGGAAGTGTGCTAGCATCCGTGCTGGTAAAGCTGAACTGGATGATGAGGTTGTAATGTTGAATATATTGGCTACAATTTCGGGGAGATATTTTGGACAATCTGAAAATTGA
Protein sequence

>MS.gene90884.t1

MESMRFVNVSQQHKFWKTIYTALQSAFADEYDTLVVAAAAHNNNRHTPLPFLPNKKPILTGAVYCGNMNNERQFMEIGGSVSHVDPSYTHSLISKHGCSVSEECIENDDDDDDSEDDYASIQRPAFQVDGEPNFDSGPPEDGWEYLRRVRWEAYQIPKVKVSKLDRSKLNKEQSAYMPQIPDIAKCPEHLLPLKQWEDVFLAEFSVLRENLSRIEGSSATHSGNLQSLISSKLPGNNFGVMNRDVLLHNNTSIGKADQPTNLTAKDEDSTVPPENPVLKTSVDQTSSSCSTPLLSTILGMDSVARVSMLLKRIRLLEPENTITRIDCMWLFALCAAVDAPLDADTCAALRSLLRKCASIRAGKAELDDEVVMLNILATISGRYFGQSEN