Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90116.t1 | RHN82787.1 | 92.9 | 322 | 21 | 1 | 1 | 322 | 1 | 320 | 7.00E-161 | 576.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90116.t1 | O42260 | 28.0 | 254 | 161 | 7 | 69 | 321 | 19 | 251 | 4.2e-13 | 77.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90116.t1 | G7IAZ6 | 92.9 | 322 | 21 | 1 | 1 | 322 | 202 | 521 | 5.1e-161 | 576.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07236 | MS.gene90116 | PPI |
| MS.gene047872 | MS.gene90116 | PPI |
| MS.gene025726 | MS.gene90116 | PPI |
| MS.gene90116 | MS.gene005567 | PPI |
| MS.gene44906 | MS.gene90116 | PPI |
| MS.gene35022 | MS.gene90116 | PPI |
| MS.gene70370 | MS.gene90116 | PPI |
| MS.gene90116 | MS.gene22969 | PPI |
| MS.gene88797 | MS.gene90116 | PPI |
| MS.gene018529 | MS.gene90116 | PPI |
| MS.gene90116 | MS.gene06988 | PPI |
| MS.gene025725 | MS.gene90116 | PPI |
| MS.gene36138 | MS.gene90116 | PPI |
| MS.gene43805 | MS.gene90116 | PPI |
| MS.gene90116 | MS.gene20758 | PPI |
| MS.gene028438 | MS.gene90116 | PPI |
| MS.gene061923 | MS.gene90116 | PPI |
| MS.gene011973 | MS.gene90116 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90116.t1 | MTR_1g116530 | 92.547 | 322 | 22 | 1 | 1 | 322 | 202 | 521 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90116.t1 | AT1G54380 | 46.897 | 290 | 108 | 6 | 34 | 319 | 265 | 512 | 1.85e-69 | 225 |
| MS.gene90116.t1 | AT2G42510 | 62.500 | 88 | 31 | 2 | 28 | 114 | 405 | 491 | 1.72e-26 | 109 |
| MS.gene90116.t1 | AT2G42510 | 76.119 | 67 | 15 | 1 | 49 | 114 | 443 | 509 | 6.14e-26 | 108 |
Find 77 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCAGAGGCCTGCGTTTC+AGG | 0.095865 | 1.4:+88396775 | MS.gene90116:CDS |
| ACAATTTCGGGGAGATATTT+TGG | 0.150062 | 1.4:+88397842 | MS.gene90116:CDS |
| AATATATTGGCTACAATTTC+GGG | 0.157564 | 1.4:+88397830 | MS.gene90116:CDS |
| AAGTTACCTGGAAATAATTT+TGG | 0.208567 | 1.4:+88397404 | MS.gene90116:CDS |
| GAATATATTGGCTACAATTT+CGG | 0.218549 | 1.4:+88397829 | MS.gene90116:CDS |
| GGTTCAAGTGCCACGCATTC+TGG | 0.282581 | 1.4:+88397356 | MS.gene90116:CDS |
| GAACGACAATTCATGGAAAT+TGG | 0.288736 | 1.4:+88396626 | MS.gene90116:CDS |
| GGTGGACCAGAATCAAAATT+AGG | 0.292136 | 1.4:-88396809 | None:intergenic |
| AGTTTGGATACCTTCACTTT+AGG | 0.303255 | 1.4:-88397070 | None:intergenic |
| ATCACTCCAAAATTATTTCC+AGG | 0.334285 | 1.4:-88397410 | None:intergenic |
| TCTTTAGCAGTCAAGTTAGT+AGG | 0.341512 | 1.4:-88397485 | None:intergenic |
| AGATATTCCCATCCGTCTTC+TGG | 0.348856 | 1.4:-88396830 | None:intergenic |
| AAGTTTACTTCTATCAAGTT+TGG | 0.350512 | 1.4:-88397086 | None:intergenic |
| TCAGGACACTTGGCAATATC+AGG | 0.356178 | 1.4:-88397142 | None:intergenic |
| GGATAATGAACGACAATTCA+TGG | 0.363389 | 1.4:+88396619 | MS.gene90116:CDS |
| ACTTGGCAATATCAGGAATC+TGG | 0.365174 | 1.4:-88397135 | None:intergenic |
| GGTTGTAATGTTGAATATAT+TGG | 0.370085 | 1.4:+88397817 | MS.gene90116:CDS |
| CCGTGCTGGTAAAGCTGAAC+TGG | 0.379253 | 1.4:+88397787 | MS.gene90116:CDS |
| AAGACGGATGGGAATATCTT+AGG | 0.380050 | 1.4:+88396834 | MS.gene90116:CDS |
| GGGAATATCTTAGGCGTGTC+AGG | 0.399604 | 1.4:+88396843 | MS.gene90116:CDS |
| AGGCCTGCGTTTCAGGTAGA+TGG | 0.401054 | 1.4:+88396782 | MS.gene90116:CDS |
| ACATCCTCCCATTGTTTCAA+TGG | 0.401833 | 1.4:-88397175 | None:intergenic |
| CTACCTGAAACGCAGGCCTC+TGG | 0.413678 | 1.4:-88396778 | None:intergenic |
| CTTATTTCCTCAAAGTTACC+TGG | 0.429187 | 1.4:+88397392 | MS.gene90116:CDS |
| CCCCTGCTTTCAACAATCCT+AGG | 0.446314 | 1.4:+88397584 | MS.gene90116:CDS |
| ATTATTTCCAGGTAACTTTG+AGG | 0.459577 | 1.4:-88397399 | None:intergenic |
| TTCAATGGCAACAGATGCTC+AGG | 0.464041 | 1.4:-88397160 | None:intergenic |
| CTTGGCAATATCAGGAATCT+GGG | 0.464802 | 1.4:-88397134 | None:intergenic |
| TCCCTAGGATTGTTGAAAGC+AGG | 0.480836 | 1.4:-88397586 | None:intergenic |
| TGAGGATAGCACCGTGCCTC+CGG | 0.486698 | 1.4:+88397508 | MS.gene90116:CDS |
| ATAAGACTATGAGTATAAGA+AGG | 0.488171 | 1.4:-88396671 | None:intergenic |
| CAGAATCTGTCACGTATTGA+AGG | 0.488568 | 1.4:+88397335 | MS.gene90116:intron |
| CAACAGATGCTCAGGACACT+TGG | 0.502613 | 1.4:-88397152 | None:intergenic |
| CATAGTCTTATAAGTAAGCA+TGG | 0.512873 | 1.4:+88396683 | MS.gene90116:CDS |
| ATCTGTTGCCATTGAAACAA+TGG | 0.523105 | 1.4:+88397167 | MS.gene90116:CDS |
| TCTGTTGCCATTGAAACAAT+GGG | 0.525124 | 1.4:+88397168 | MS.gene90116:CDS |
| CTTCATAATAACACGAGCAT+TGG | 0.532195 | 1.4:+88397449 | MS.gene90116:CDS |
| GATTGTTGAAAGCAGGGGAG+TGG | 0.532703 | 1.4:-88397579 | None:intergenic |
| CACACTTCCGCAGCAGACTC+CGG | 0.533825 | 1.4:-88397757 | None:intergenic |
| CCCTAGGATTGTTGAAAGCA+GGG | 0.537138 | 1.4:-88397585 | None:intergenic |
| TTTCAGCAACATTGAGACTC+GGG | 0.544817 | 1.4:-88397621 | None:intergenic |
| CGACAATTCATGGAAATTGG+TGG | 0.550323 | 1.4:+88396629 | MS.gene90116:CDS |
| CTGGTCCACCAGAAGACGGA+TGG | 0.561101 | 1.4:+88396822 | MS.gene90116:CDS |
| TAATAACACGAGCATTGGTA+AGG | 0.562700 | 1.4:+88397454 | MS.gene90116:CDS |
| CCCTGCTTTCAACAATCCTA+GGG | 0.569746 | 1.4:+88397585 | MS.gene90116:CDS |
| GCACAAGTGTCTGCATCTAG+TGG | 0.569910 | 1.4:-88397728 | None:intergenic |
| CTGCACTCCGGAGTCTGCTG+CGG | 0.570655 | 1.4:+88397750 | MS.gene90116:CDS |
| TATTCCCATCCGTCTTCTGG+TGG | 0.573091 | 1.4:-88396827 | None:intergenic |
| TACAGGATTCTCCGGAGGCA+CGG | 0.575594 | 1.4:-88397519 | None:intergenic |
| GTTTCAGCAACATTGAGACT+CGG | 0.575650 | 1.4:-88397622 | None:intergenic |
| GATTCTGGTCCACCAGAAGA+CGG | 0.580030 | 1.4:+88396818 | MS.gene90116:CDS |
| TTGTAGATTGCCAGAATGCG+TGG | 0.584277 | 1.4:-88397366 | None:intergenic |
| AAGTGTGCTAGCATCCGTGC+TGG | 0.589286 | 1.4:+88397773 | MS.gene90116:CDS |
| TAAGACTATGAGTATAAGAA+GGG | 0.591244 | 1.4:-88396670 | None:intergenic |
| TCTTTACTTGCCTAGGTGGG+AGG | 0.592344 | 1.4:+88397036 | MS.gene90116:intron |
| CCAGTTCAGCTTTACCAGCA+CGG | 0.594914 | 1.4:-88397787 | None:intergenic |
| GCTTTCAACAATCCTAGGGA+TGG | 0.595935 | 1.4:+88397589 | MS.gene90116:CDS |
| CAGACACTTGTGCTGCACTC+CGG | 0.597128 | 1.4:+88397738 | MS.gene90116:CDS |
| TCTCCATCTACCTGAAACGC+AGG | 0.598704 | 1.4:-88396785 | None:intergenic |
| TCCTGTATTGAAAACATCCG+TGG | 0.601385 | 1.4:+88397535 | MS.gene90116:CDS |
| CATGCAATCAATTCTTGTGA+TGG | 0.606582 | 1.4:-88397672 | None:intergenic |
| TCACAAGAATTGATTGCATG+TGG | 0.606890 | 1.4:+88397675 | MS.gene90116:CDS |
| ATAGTCTTATAAGTAAGCAT+GGG | 0.622205 | 1.4:+88396684 | MS.gene90116:CDS |
| ATATCAAATTCCTAAAGTGA+AGG | 0.623520 | 1.4:+88397060 | MS.gene90116:CDS |
| GAGTATAAGAAGGGTCAACA+TGG | 0.624659 | 1.4:-88396661 | None:intergenic |
| TGGTCCACCAGAAGACGGAT+GGG | 0.631512 | 1.4:+88396823 | MS.gene90116:CDS |
| TAACTTGACTGCTAAAGATG+AGG | 0.640802 | 1.4:+88397490 | MS.gene90116:CDS |
| TGATAGAAGTAAACTTAACA+AGG | 0.642496 | 1.4:+88397093 | MS.gene90116:CDS |
| CCTAGGATTGTTGAAAGCAG+GGG | 0.642812 | 1.4:-88397584 | None:intergenic |
| GGGCTACAGAGTCCATCCCT+AGG | 0.642846 | 1.4:-88397601 | None:intergenic |
| ATGATTATGCTAGCATCCAG+AGG | 0.651012 | 1.4:+88396762 | MS.gene90116:CDS |
| TTCAATACAGGATTCTCCGG+AGG | 0.653479 | 1.4:-88397524 | None:intergenic |
| TAAAGCTGAACTGGATGATG+AGG | 0.657096 | 1.4:+88397796 | MS.gene90116:CDS |
| GCTGCTACTAGTTTGATCCA+CGG | 0.659357 | 1.4:-88397552 | None:intergenic |
| ATATATTGGCTACAATTTCG+GGG | 0.666684 | 1.4:+88397831 | MS.gene90116:CDS |
| TTGGCAATATCAGGAATCTG+GGG | 0.686299 | 1.4:-88397133 | None:intergenic |
| GTTGCCATTGAAACAATGGG+AGG | 0.779901 | 1.4:+88397171 | MS.gene90116:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTTAATAGTATATACTA+AGG | + | chr1.4:88397282-88397301 | MS.gene90116:intron | 15.0% |
| !! | TTAAAGCATAAATTGATCAA+AGG | - | chr1.4:88396902-88396921 | None:intergenic | 20.0% |
| ! | AAGTTTACTTCTATCAAGTT+TGG | - | chr1.4:88397089-88397108 | None:intergenic | 25.0% |
| ! | AATAACAAAATTGGGAAACA+AGG | - | chr1.4:88397314-88397333 | None:intergenic | 25.0% |
| ! | ATAACAAAATTGGGAAACAA+GGG | - | chr1.4:88397313-88397332 | None:intergenic | 25.0% |
| ! | ATAAGACTATGAGTATAAGA+AGG | - | chr1.4:88396674-88396693 | None:intergenic | 25.0% |
| ! | ATATCAAATTCCTAAAGTGA+AGG | + | chr1.4:88397060-88397079 | MS.gene90116:CDS | 25.0% |
| ! | GGTTGTAATGTTGAATATAT+TGG | + | chr1.4:88397817-88397836 | MS.gene90116:CDS | 25.0% |
| ! | TAAGACTATGAGTATAAGAA+GGG | - | chr1.4:88396673-88396692 | None:intergenic | 25.0% |
| ! | TCTTCATGATAACTTTATCT+AGG | + | chr1.4:88396932-88396951 | MS.gene90116:intron | 25.0% |
| ! | TGATAGAAGTAAACTTAACA+AGG | + | chr1.4:88397093-88397112 | MS.gene90116:CDS | 25.0% |
| !! | AAGTTACCTGGAAATAATTT+TGG | + | chr1.4:88397404-88397423 | MS.gene90116:CDS | 25.0% |
| !! | AATATATTGGCTACAATTTC+GGG | + | chr1.4:88397830-88397849 | MS.gene90116:CDS | 25.0% |
| !! | GAATATATTGGCTACAATTT+CGG | + | chr1.4:88397829-88397848 | MS.gene90116:CDS | 25.0% |
| !!! | AGATTCTGGAATAACAAAAT+TGG | - | chr1.4:88397323-88397342 | None:intergenic | 25.0% |
| !!! | ATAGTCTTATAAGTAAGCAT+GGG | + | chr1.4:88396684-88396703 | MS.gene90116:CDS | 25.0% |
| !!! | GATTCTGGAATAACAAAATT+GGG | - | chr1.4:88397322-88397341 | None:intergenic | 25.0% |
| ATCACTCCAAAATTATTTCC+AGG | - | chr1.4:88397413-88397432 | None:intergenic | 30.0% | |
| ATTATTTCCAGGTAACTTTG+AGG | - | chr1.4:88397402-88397421 | None:intergenic | 30.0% | |
| ! | AGAATTTTCAGTACTAAGAG+AGG | + | chr1.4:88397207-88397226 | MS.gene90116:CDS | 30.0% |
| ! | ATATATTGGCTACAATTTCG+GGG | + | chr1.4:88397831-88397850 | MS.gene90116:CDS | 30.0% |
| ! | GATAACTTTATCTAGGATTC+TGG | + | chr1.4:88396939-88396958 | MS.gene90116:intron | 30.0% |
| !! | AACGTGTTATTTCTACTACT+AGG | - | chr1.4:88397008-88397027 | None:intergenic | 30.0% |
| !! | CATAGTCTTATAAGTAAGCA+TGG | + | chr1.4:88396683-88396702 | MS.gene90116:CDS | 30.0% |
| !! | GATTCTGGTTTGTTAAATGA+CGG | + | chr1.4:88396954-88396973 | MS.gene90116:intron | 30.0% |
| !! | TGTTATTTCTACTACTAGGA+AGG | - | chr1.4:88397004-88397023 | None:intergenic | 30.0% |
| AGTTTGGATACCTTCACTTT+AGG | - | chr1.4:88397073-88397092 | None:intergenic | 35.0% | |
| ATCTGTTGCCATTGAAACAA+TGG | + | chr1.4:88397167-88397186 | MS.gene90116:CDS | 35.0% | |
| CATGCAATCAATTCTTGTGA+TGG | - | chr1.4:88397675-88397694 | None:intergenic | 35.0% | |
| CTTAAACTCTTTACTTGCCT+AGG | + | chr1.4:88397029-88397048 | MS.gene90116:intron | 35.0% | |
| CTTATTTCCTCAAAGTTACC+TGG | + | chr1.4:88397392-88397411 | MS.gene90116:CDS | 35.0% | |
| CTTCATAATAACACGAGCAT+TGG | + | chr1.4:88397449-88397468 | MS.gene90116:CDS | 35.0% | |
| GAACGACAATTCATGGAAAT+TGG | + | chr1.4:88396626-88396645 | MS.gene90116:CDS | 35.0% | |
| GGATAATGAACGACAATTCA+TGG | + | chr1.4:88396619-88396638 | MS.gene90116:CDS | 35.0% | |
| TAACTTGACTGCTAAAGATG+AGG | + | chr1.4:88397490-88397509 | MS.gene90116:CDS | 35.0% | |
| TCACAAGAATTGATTGCATG+TGG | + | chr1.4:88397675-88397694 | MS.gene90116:CDS | 35.0% | |
| TCTGTTGCCATTGAAACAAT+GGG | + | chr1.4:88397168-88397187 | MS.gene90116:CDS | 35.0% | |
| TCTTTAGCAGTCAAGTTAGT+AGG | - | chr1.4:88397488-88397507 | None:intergenic | 35.0% | |
| ! | ACAATTTCGGGGAGATATTT+TGG | + | chr1.4:88397842-88397861 | MS.gene90116:CDS | 35.0% |
| ! | GTTTTCAATACAGGATTCTC+CGG | - | chr1.4:88397530-88397549 | None:intergenic | 35.0% |
| ! | TGATGATGATGATGATAGTG+AGG | + | chr1.4:88396739-88396758 | MS.gene90116:CDS | 35.0% |
| !! | ATTCTTGTGATGGTGTTTTC+AGG | - | chr1.4:88397665-88397684 | None:intergenic | 35.0% |
| !! | TAATAACACGAGCATTGGTA+AGG | + | chr1.4:88397454-88397473 | MS.gene90116:CDS | 35.0% |
| !! | TAGTGTTCTAGAACTCATCT+CGG | + | chr1.4:88397232-88397251 | MS.gene90116:intron | 35.0% |
| !!! | GGAGAACCTAATTTTGATTC+TGG | + | chr1.4:88396803-88396822 | MS.gene90116:CDS | 35.0% |
| AAACTCTTTACTTGCCTAGG+TGG | + | chr1.4:88397032-88397051 | MS.gene90116:intron | 40.0% | |
| AACTCTTTACTTGCCTAGGT+GGG | + | chr1.4:88397033-88397052 | MS.gene90116:intron | 40.0% | |
| AAGACGGATGGGAATATCTT+AGG | + | chr1.4:88396834-88396853 | MS.gene90116:CDS | 40.0% | |
| ACATCCTCCCATTGTTTCAA+TGG | - | chr1.4:88397178-88397197 | None:intergenic | 40.0% | |
| ACTTGGCAATATCAGGAATC+TGG | - | chr1.4:88397138-88397157 | None:intergenic | 40.0% | |
| ATGATTATGCTAGCATCCAG+AGG | + | chr1.4:88396762-88396781 | MS.gene90116:CDS | 40.0% | |
| CAGAATCTGTCACGTATTGA+AGG | + | chr1.4:88397335-88397354 | MS.gene90116:intron | 40.0% | |
| CGACAATTCATGGAAATTGG+TGG | + | chr1.4:88396629-88396648 | MS.gene90116:CDS | 40.0% | |
| CTTCAATACGTGACAGATTC+TGG | - | chr1.4:88397337-88397356 | None:intergenic | 40.0% | |
| CTTGGCAATATCAGGAATCT+GGG | - | chr1.4:88397137-88397156 | None:intergenic | 40.0% | |
| GAGTATAAGAAGGGTCAACA+TGG | - | chr1.4:88396664-88396683 | None:intergenic | 40.0% | |
| GGTGGACCAGAATCAAAATT+AGG | - | chr1.4:88396812-88396831 | None:intergenic | 40.0% | |
| GTTTCAGCAACATTGAGACT+CGG | - | chr1.4:88397625-88397644 | None:intergenic | 40.0% | |
| TAAAGCTGAACTGGATGATG+AGG | + | chr1.4:88397796-88397815 | MS.gene90116:CDS | 40.0% | |
| TCCTGTATTGAAAACATCCG+TGG | + | chr1.4:88397535-88397554 | MS.gene90116:CDS | 40.0% | |
| TTGATCAAAGGACCAGCAAT+TGG | - | chr1.4:88396890-88396909 | None:intergenic | 40.0% | |
| TTGGCAATATCAGGAATCTG+GGG | - | chr1.4:88397136-88397155 | None:intergenic | 40.0% | |
| TTTCAGCAACATTGAGACTC+GGG | - | chr1.4:88397624-88397643 | None:intergenic | 40.0% | |
| ! | AGAACTCATCTCGGTCTTTT+GGG | + | chr1.4:88397241-88397260 | MS.gene90116:intron | 40.0% |
| ! | TAGAACTCATCTCGGTCTTT+TGG | + | chr1.4:88397240-88397259 | MS.gene90116:intron | 40.0% |
| ! | TCCACGGATGTTTTCAATAC+AGG | - | chr1.4:88397539-88397558 | None:intergenic | 40.0% |
| AGATATTCCCATCCGTCTTC+TGG | - | chr1.4:88396833-88396852 | None:intergenic | 45.0% | |
| ATTTGATATGCCTCCCACCT+AGG | - | chr1.4:88397049-88397068 | None:intergenic | 45.0% | |
| CCCTAGGATTGTTGAAAGCA+GGG | - | chr1.4:88397588-88397607 | None:intergenic | 45.0% | |
| CCCTGCTTTCAACAATCCTA+GGG | + | chr1.4:88397585-88397604 | MS.gene90116:CDS | 45.0% | |
| CCTAGGATTGTTGAAAGCAG+GGG | - | chr1.4:88397587-88397606 | None:intergenic | 45.0% | |
| GCTTTCAACAATCCTAGGGA+TGG | + | chr1.4:88397589-88397608 | MS.gene90116:CDS | 45.0% | |
| GTTGCCATTGAAACAATGGG+AGG | + | chr1.4:88397171-88397190 | MS.gene90116:CDS | 45.0% | |
| TCAGGACACTTGGCAATATC+AGG | - | chr1.4:88397145-88397164 | None:intergenic | 45.0% | |
| TCCCTAGGATTGTTGAAAGC+AGG | - | chr1.4:88397589-88397608 | None:intergenic | 45.0% | |
| TTCAATACAGGATTCTCCGG+AGG | - | chr1.4:88397527-88397546 | None:intergenic | 45.0% | |
| TTCAATGGCAACAGATGCTC+AGG | - | chr1.4:88397163-88397182 | None:intergenic | 45.0% | |
| TTGTAGATTGCCAGAATGCG+TGG | - | chr1.4:88397369-88397388 | None:intergenic | 45.0% | |
| ! | GCTGCTACTAGTTTGATCCA+CGG | - | chr1.4:88397555-88397574 | None:intergenic | 45.0% |
| AACTGTCAGCTGCCAATTGC+TGG | + | chr1.4:88396875-88396894 | MS.gene90116:intron | 50.0% | |
| CAACAGATGCTCAGGACACT+TGG | - | chr1.4:88397155-88397174 | None:intergenic | 50.0% | |
| CCAGTTCAGCTTTACCAGCA+CGG | - | chr1.4:88397790-88397809 | None:intergenic | 50.0% | |
| CCCCTGCTTTCAACAATCCT+AGG | + | chr1.4:88397584-88397603 | MS.gene90116:CDS | 50.0% | |
| GATTCTGGTCCACCAGAAGA+CGG | + | chr1.4:88396818-88396837 | MS.gene90116:CDS | 50.0% | |
| GATTGTTGAAAGCAGGGGAG+TGG | - | chr1.4:88397582-88397601 | None:intergenic | 50.0% | |
| GCACAAGTGTCTGCATCTAG+TGG | - | chr1.4:88397731-88397750 | None:intergenic | 50.0% | |
| GGGAATATCTTAGGCGTGTC+AGG | + | chr1.4:88396843-88396862 | MS.gene90116:CDS | 50.0% | |
| TATTCCCATCCGTCTTCTGG+TGG | - | chr1.4:88396830-88396849 | None:intergenic | 50.0% | |
| TCTCCATCTACCTGAAACGC+AGG | - | chr1.4:88396788-88396807 | None:intergenic | 50.0% | |
| TCTTTACTTGCCTAGGTGGG+AGG | + | chr1.4:88397036-88397055 | MS.gene90116:intron | 50.0% | |
| AAGTGTGCTAGCATCCGTGC+TGG | + | chr1.4:88397773-88397792 | MS.gene90116:CDS | 55.0% | |
| CAGACACTTGTGCTGCACTC+CGG | + | chr1.4:88397738-88397757 | MS.gene90116:CDS | 55.0% | |
| GGTTCAAGTGCCACGCATTC+TGG | + | chr1.4:88397356-88397375 | MS.gene90116:CDS | 55.0% | |
| TACAGGATTCTCCGGAGGCA+CGG | - | chr1.4:88397522-88397541 | None:intergenic | 55.0% | |
| TGGTCCACCAGAAGACGGAT+GGG | + | chr1.4:88396823-88396842 | MS.gene90116:CDS | 55.0% | |
| ! | AGGCCTGCGTTTCAGGTAGA+TGG | + | chr1.4:88396782-88396801 | MS.gene90116:CDS | 55.0% |
| ! | CCGTGCTGGTAAAGCTGAAC+TGG | + | chr1.4:88397787-88397806 | MS.gene90116:CDS | 55.0% |
| CACACTTCCGCAGCAGACTC+CGG | - | chr1.4:88397760-88397779 | None:intergenic | 60.0% | |
| CATCCAGAGGCCTGCGTTTC+AGG | + | chr1.4:88396775-88396794 | MS.gene90116:CDS | 60.0% | |
| CTACCTGAAACGCAGGCCTC+TGG | - | chr1.4:88396781-88396800 | None:intergenic | 60.0% | |
| CTGGTCCACCAGAAGACGGA+TGG | + | chr1.4:88396822-88396841 | MS.gene90116:CDS | 60.0% | |
| GGGCTACAGAGTCCATCCCT+AGG | - | chr1.4:88397604-88397623 | None:intergenic | 60.0% | |
| TGAGGATAGCACCGTGCCTC+CGG | + | chr1.4:88397508-88397527 | MS.gene90116:CDS | 60.0% | |
| CTGCACTCCGGAGTCTGCTG+CGG | + | chr1.4:88397750-88397769 | MS.gene90116:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88396617 | 88397880 | 88396617 | ID=MS.gene90116 |
| chr1.4 | mRNA | 88396617 | 88397880 | 88396617 | ID=MS.gene90116.t1;Parent=MS.gene90116 |
| chr1.4 | exon | 88396617 | 88396864 | 88396617 | ID=MS.gene90116.t1.exon1;Parent=MS.gene90116.t1 |
| chr1.4 | CDS | 88396617 | 88396864 | 88396617 | ID=cds.MS.gene90116.t1;Parent=MS.gene90116.t1 |
| chr1.4 | exon | 88397051 | 88397228 | 88397051 | ID=MS.gene90116.t1.exon2;Parent=MS.gene90116.t1 |
| chr1.4 | CDS | 88397051 | 88397228 | 88397051 | ID=cds.MS.gene90116.t1;Parent=MS.gene90116.t1 |
| chr1.4 | exon | 88397338 | 88397880 | 88397338 | ID=MS.gene90116.t1.exon3;Parent=MS.gene90116.t1 |
| chr1.4 | CDS | 88397338 | 88397880 | 88397338 | ID=cds.MS.gene90116.t1;Parent=MS.gene90116.t1 |
| Gene Sequence |
| Protein sequence |
