AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74239

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74239.t1 MTR_1g116530 86.778 537 40 12 1 522 1 521 0.0 846
MS.gene74239.t1 MTR_6g086905 44.505 182 70 7 1 169 1 164 1.37e-31 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74239.t1 AT1G54380 35.671 499 215 14 45 519 96 512 1.30e-80 261
MS.gene74239.t1 AT2G42510 31.522 276 81 8 81 314 300 509 2.00e-29 122
MS.gene74239.t1 AT2G42510 76.119 67 15 1 249 314 425 491 1.51e-25 110

Find 118 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCAGAGGCCTGCGTTTC+AGG 0.095865 1.2:+86508385 MS.gene74239:CDS
ACAATTTCGGGGAGATATTT+TGG 0.150062 1.2:+86509452 MS.gene74239:CDS
AATATATTGGCTACAATTTC+GGG 0.157564 1.2:+86509440 MS.gene74239:CDS
AGCAGCAATCTTGTTGTTTC+CGG 0.198999 1.2:-86506974 None:intergenic
AAGTTACCTGGAAATAATTT+TGG 0.208567 1.2:+86509014 MS.gene74239:CDS
ATCTTGGAAGGCTTTCTTCT+TGG 0.213408 1.2:-86507150 None:intergenic
GAATATATTGGCTACAATTT+CGG 0.218549 1.2:+86509439 MS.gene74239:CDS
TCTCTCAGCAGCACAAATTC+TGG 0.272998 1.2:+86507283 MS.gene74239:CDS
GGAAGGCTTTCTTCTTGGTT+TGG 0.276604 1.2:-86507145 None:intergenic
GGTTCAAGTGCCACGCATTC+TGG 0.282581 1.2:+86508966 MS.gene74239:CDS
GAACGACAATTCATGGAAAT+TGG 0.288736 1.2:+86508233 MS.gene74239:CDS
GGTGGACCAGAATCAAAATT+AGG 0.292136 1.2:-86508419 None:intergenic
GAAGGCTTTCTTCTTGGTTT+GGG 0.300427 1.2:-86507144 None:intergenic
AGTTTGGATACCTTCACTTT+AGG 0.303255 1.2:-86508680 None:intergenic
TTTGAAAACCCTAAGGAGTT+AGG 0.311792 1.2:-86507081 None:intergenic
ATCACTCCAAAATTATTTCC+AGG 0.334285 1.2:-86509020 None:intergenic
TCTTTAGCAGTCAAGTTAGT+AGG 0.341512 1.2:-86509095 None:intergenic
GTTCTTGTTGGTCTTCATCT+TGG 0.346146 1.2:-86507166 None:intergenic
AGATATTCCCATCCGTCTTC+TGG 0.348856 1.2:-86508440 None:intergenic
AAGTTTACTTCTATCAAGTT+TGG 0.350512 1.2:-86508696 None:intergenic
CTTGTCAGTGCTGCTACTTC+CGG 0.355328 1.2:-86507193 None:intergenic
TCAGGACACTTGGCAATATC+AGG 0.356178 1.2:-86508752 None:intergenic
TGCAGTGTATTGTGGAAATA+TGG 0.360062 1.2:+86508205 MS.gene74239:CDS
GGATAATGAACGACAATTCA+TGG 0.363389 1.2:+86508226 MS.gene74239:CDS
ACTTGGCAATATCAGGAATC+TGG 0.365174 1.2:-86508745 None:intergenic
AACCCTAAGGAGTTAGGTTT+GGG 0.367825 1.2:-86507075 None:intergenic
GGTTGTAATGTTGAATATAT+TGG 0.370085 1.2:+86509427 MS.gene74239:CDS
CCGTGCTGGTAAAGCTGAAC+TGG 0.379253 1.2:+86509397 MS.gene74239:CDS
AAGACGGATGGGAATATCTT+AGG 0.380050 1.2:+86508444 MS.gene74239:CDS
AAACCCTAAGGAGTTAGGTT+TGG 0.380499 1.2:-86507076 None:intergenic
ACTTCCGGTGTTGTTCTTGT+TGG 0.398214 1.2:-86507178 None:intergenic
GGGAATATCTTAGGCGTGTC+AGG 0.399604 1.2:+86508453 MS.gene74239:CDS
ACTCCCAAACCTAACTCCTT+AGG 0.406351 1.2:+86507072 MS.gene74239:CDS
GTGAGAATTGGTTTCTTGTT+GGG 0.410292 1.2:-86507414 None:intergenic
CTACCTGAAACGCAGGCCTC+TGG 0.412069 1.2:-86508388 None:intergenic
ATATCCTCCCATTGTTTCAA+TGG 0.412617 1.2:-86508785 None:intergenic
TTGTTGGTCTTCATCTTGGA+AGG 0.417124 1.2:-86507162 None:intergenic
AAGTACTAACCAGTGAGAAT+TGG 0.427399 1.2:-86507426 None:intergenic
CTTATTTCCTCAAAGTTACC+TGG 0.429187 1.2:+86509002 MS.gene74239:CDS
AATCTTGTTGTTTCCGGTGA+CGG 0.443780 1.2:-86506968 None:intergenic
CCCCTGCTTTCAACAATCCT+AGG 0.446314 1.2:+86509194 MS.gene74239:CDS
CTCCCAAACCTAACTCCTTA+GGG 0.454133 1.2:+86507073 MS.gene74239:CDS
ATTATTTCCAGGTAACTTTG+AGG 0.459577 1.2:-86509009 None:intergenic
TTCAATGGCAACAGATGCTC+AGG 0.464041 1.2:-86508770 None:intergenic
GAAGTACTCTCGCGAGATGA+TGG 0.464629 1.2:+86507239 MS.gene74239:CDS
CTTGGCAATATCAGGAATCT+GGG 0.464802 1.2:-86508744 None:intergenic
ATAAGACTATGAATATAAGA+AGG 0.479113 1.2:-86508278 None:intergenic
AGTGAGAATTGGTTTCTTGT+TGG 0.480721 1.2:-86507415 None:intergenic
TCCCTAGGATTGTTGAAAGC+AGG 0.480836 1.2:-86509196 None:intergenic
GATGATGCCGCCACCGTCAC+CGG 0.481458 1.2:+86506955 MS.gene74239:CDS
GTTGTTTCCGGTGACGGTGG+CGG 0.486317 1.2:-86506962 None:intergenic
TGAGGATAGCACCGTGCCTC+CGG 0.486698 1.2:+86509118 MS.gene74239:CDS
CAGAATCTGTCACGTATTGA+AGG 0.488568 1.2:+86508945 MS.gene74239:intron
TTGTTCGTTACACTTTGAAA+CGG 0.492566 1.2:-86506875 None:intergenic
CATAGTCTTATGAGTAAGCA+TGG 0.500514 1.2:+86508290 MS.gene74239:CDS
AGGCAAGAAGAAACGTCTCT+TGG 0.501980 1.2:+86507017 MS.gene74239:CDS
CAACAGATGCTCAGGACACT+TGG 0.502613 1.2:-86508762 None:intergenic
GTTAGGTTTGGGAGTAGCGA+TGG 0.511294 1.2:-86507064 None:intergenic
CTTTCAGGTGCAGTGTATTG+TGG 0.521928 1.2:+86508197 MS.gene74239:intron
ATCTGTTGCCATTGAAACAA+TGG 0.523105 1.2:+86508777 MS.gene74239:CDS
TCTGTTGCCATTGAAACAAT+GGG 0.525124 1.2:+86508778 MS.gene74239:CDS
CTTCATAATAACACGAGCAT+TGG 0.532195 1.2:+86509059 MS.gene74239:CDS
GATTGTTGAAAGCAGGGGAG+TGG 0.532703 1.2:-86509189 None:intergenic
CACACTTCCGCAGCAGACTC+CGG 0.533825 1.2:-86509367 None:intergenic
GTTGTTGTTGTGAGCAGCGG+CGG 0.534294 1.2:-86507367 None:intergenic
CCCTAGGATTGTTGAAAGCA+GGG 0.537138 1.2:-86509195 None:intergenic
TTTCAGCAACATTGAGACTC+GGG 0.544817 1.2:-86509231 None:intergenic
CTCAATGTTTGAAAACCCTA+AGG 0.548189 1.2:-86507088 None:intergenic
CGACAATTCATGGAAATTGG+TGG 0.550323 1.2:+86508236 MS.gene74239:CDS
TTGTTGGGAAGGAACGGAAG+AGG 0.550366 1.2:-86507399 None:intergenic
GAATTGGTTTCTTGTTGGGA+AGG 0.550414 1.2:-86507410 None:intergenic
CTTGTTGTTTCCGGTGACGG+TGG 0.556420 1.2:-86506965 None:intergenic
CTGGTCCACCAGAAGACGGA+TGG 0.561101 1.2:+86508432 MS.gene74239:CDS
TAATAACACGAGCATTGGTA+AGG 0.562700 1.2:+86509064 MS.gene74239:CDS
AGGTTTGGGAGTAGCGATGG+TGG 0.565177 1.2:-86507061 None:intergenic
TGCTGATGAGTATGATACAT+TGG 0.568733 1.2:+86507338 MS.gene74239:CDS
CCCTGCTTTCAACAATCCTA+GGG 0.569746 1.2:+86509195 MS.gene74239:CDS
GCACAAGTGTCTGCATCTAG+TGG 0.569910 1.2:-86509338 None:intergenic
CTGCACTCCGGAGTCTGCTG+CGG 0.570655 1.2:+86509360 MS.gene74239:CDS
AACAAGAAACCAATTCTCAC+TGG 0.572694 1.2:+86507417 MS.gene74239:CDS
TATTCCCATCCGTCTTCTGG+TGG 0.573091 1.2:-86508437 None:intergenic
TACAGGATTCTCCGGAGGCA+CGG 0.575594 1.2:-86509129 None:intergenic
GTTTCAGCAACATTGAGACT+CGG 0.575650 1.2:-86509232 None:intergenic
GGTTTCTTGTTGGGAAGGAA+CGG 0.577664 1.2:-86507405 None:intergenic
GATTCTGGTCCACCAGAAGA+CGG 0.580030 1.2:+86508428 MS.gene74239:CDS
GCGAGATGATGGAGTCTATG+AGG 0.581842 1.2:+86507250 MS.gene74239:CDS
TTGTAGATTGCCAGAATGCG+TGG 0.584277 1.2:-86508976 None:intergenic
AAGTGTGCTAGCATCCGTGC+TGG 0.589286 1.2:+86509383 MS.gene74239:CDS
AGGCCTGCGTTTCAGGTAGA+CGG 0.590675 1.2:+86508392 MS.gene74239:CDS
TCTTTACTTGCCTAGGTGGG+AGG 0.592867 1.2:+86508646 MS.gene74239:intron
CCAGTTCAGCTTTACCAGCA+CGG 0.594914 1.2:-86509397 None:intergenic
GCTTTCAACAATCCTAGGGA+TGG 0.595935 1.2:+86509199 MS.gene74239:CDS
TCTCCGTCTACCTGAAACGC+AGG 0.596684 1.2:-86508395 None:intergenic
CAGACACTTGTGCTGCACTC+CGG 0.597128 1.2:+86509348 MS.gene74239:CDS
TCCTGTATTGAAAACATCCG+TGG 0.601385 1.2:+86509145 MS.gene74239:CDS
CATGCAATCAATTCTTGTGA+TGG 0.606582 1.2:-86509282 None:intergenic
TCACAAGAATTGATTGCATG+TGG 0.606890 1.2:+86509285 MS.gene74239:CDS
ACATCAAATTCCTAAAGTGA+AGG 0.612737 1.2:+86508670 MS.gene74239:CDS
TAAGACTATGAATATAAGAA+GGG 0.614920 1.2:-86508277 None:intergenic
GAATATAAGAAGGGTCAACA+TGG 0.624666 1.2:-86508268 None:intergenic
TGGTCCACCAGAAGACGGAT+GGG 0.631512 1.2:+86508433 MS.gene74239:CDS
TAACTTGACTGCTAAAGATG+AGG 0.640802 1.2:+86509100 MS.gene74239:CDS
TGATAGAAGTAAACTTAACA+AGG 0.642496 1.2:+86508703 MS.gene74239:CDS
CCTAGGATTGTTGAAAGCAG+GGG 0.642812 1.2:-86509194 None:intergenic
GGGCTACAGAGTCCATCCCT+AGG 0.642846 1.2:-86509211 None:intergenic
ACGGTTGTTGTTGTGAGCAG+CGG 0.643869 1.2:-86507370 None:intergenic
AAGACCAACAAGAACAACAC+CGG 0.646833 1.2:+86507174 MS.gene74239:CDS
ATGATTATGCTAGCATCCAG+AGG 0.651012 1.2:+86508372 MS.gene74239:CDS
TTCAATACAGGATTCTCCGG+AGG 0.653479 1.2:-86509134 None:intergenic
ATAGTCTTATGAGTAAGCAT+GGG 0.654464 1.2:+86508291 MS.gene74239:CDS
TAAAGCTGAACTGGATGATG+AGG 0.657096 1.2:+86509406 MS.gene74239:CDS
GCTGCTACTAGTTTGATCCA+CGG 0.659357 1.2:-86509162 None:intergenic
CAGCAACAACAACAACTCGA+AGG 0.664095 1.2:+86506997 MS.gene74239:CDS
ATATATTGGCTACAATTTCG+GGG 0.666684 1.2:+86509441 MS.gene74239:CDS
GGAACGGAAGAGGAGTGTGA+CGG 0.680159 1.2:-86507389 None:intergenic
TTGGCAATATCAGGAATCTG+GGG 0.686299 1.2:-86508743 None:intergenic
AGCAAAAGCAGATTGAAGCG+CGG 0.711511 1.2:-86507319 None:intergenic
GTTGCCATTGAAACAATGGG+AGG 0.739891 1.2:+86508781 MS.gene74239:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAGAAAGAAAAAAAA+TGG - chr1.2:86507834-86507853 None:intergenic 15.0%
!! TTAATAATACAAACACAATA+TGG - chr1.2:86507540-86507559 None:intergenic 15.0%
!! TTGTTTAATAGTATATACTA+AGG + chr1.2:86508892-86508911 MS.gene74239:intron 15.0%
!! ATAAGACTATGAATATAAGA+AGG - chr1.2:86508281-86508300 None:intergenic 20.0%
!! ATGAAAACTCAATAATAATC+AGG - chr1.2:86508075-86508094 None:intergenic 20.0%
!! TAAGACTATGAATATAAGAA+GGG - chr1.2:86508280-86508299 None:intergenic 20.0%
!! TTAAAGCATAAATTGATCAA+AGG - chr1.2:86508512-86508531 None:intergenic 20.0%
!!! TTTCTTTCTTTTTTGTACTT+AGG + chr1.2:86507839-86507858 MS.gene74239:intron 20.0%
! AAGTTTACTTCTATCAAGTT+TGG - chr1.2:86508699-86508718 None:intergenic 25.0%
! AATAACAAAATTGGGAAACA+AGG - chr1.2:86508924-86508943 None:intergenic 25.0%
! ATAACAAAATTGGGAAACAA+GGG - chr1.2:86508923-86508942 None:intergenic 25.0%
! ATTCATTCTTGAAAGTTCAA+TGG - chr1.2:86507759-86507778 None:intergenic 25.0%
! GGTTGTAATGTTGAATATAT+TGG + chr1.2:86509427-86509446 MS.gene74239:CDS 25.0%
! TCTTCATGATAACTTTATCT+AGG + chr1.2:86508542-86508561 MS.gene74239:intron 25.0%
! TGATAGAAGTAAACTTAACA+AGG + chr1.2:86508703-86508722 MS.gene74239:CDS 25.0%
!! AAGTTACCTGGAAATAATTT+TGG + chr1.2:86509014-86509033 MS.gene74239:CDS 25.0%
!! AATATATTGGCTACAATTTC+GGG + chr1.2:86509440-86509459 MS.gene74239:CDS 25.0%
!! GAATATATTGGCTACAATTT+CGG + chr1.2:86509439-86509458 MS.gene74239:CDS 25.0%
!! GTAAATTTGAAACACTACTT+AGG + chr1.2:86507934-86507953 MS.gene74239:intron 25.0%
!! GTCAATTTGATGTTTTCAAT+TGG + chr1.2:86507683-86507702 MS.gene74239:intron 25.0%
!!! AGATTCTGGAATAACAAAAT+TGG - chr1.2:86508933-86508952 None:intergenic 25.0%
!!! GATTCTGGAATAACAAAATT+GGG - chr1.2:86508932-86508951 None:intergenic 25.0%
ACATCAAATTCCTAAAGTGA+AGG + chr1.2:86508670-86508689 MS.gene74239:CDS 30.0%
AGACTTTCAGCTTATGAAAA+TGG - chr1.2:86508169-86508188 None:intergenic 30.0%
ATCACTCCAAAATTATTTCC+AGG - chr1.2:86509023-86509042 None:intergenic 30.0%
ATTATTTCCAGGTAACTTTG+AGG - chr1.2:86509012-86509031 None:intergenic 30.0%
GACTTTCAGCTTATGAAAAT+GGG - chr1.2:86508168-86508187 None:intergenic 30.0%
TTCAAGAATGAATCAGCAAA+GGG + chr1.2:86507766-86507785 MS.gene74239:intron 30.0%
TTTCAAGAATGAATCAGCAA+AGG + chr1.2:86507765-86507784 MS.gene74239:intron 30.0%
! AGAATTTTCAGTACTAAGAG+AGG + chr1.2:86508817-86508836 MS.gene74239:CDS 30.0%
! ATATATTGGCTACAATTTCG+GGG + chr1.2:86509441-86509460 MS.gene74239:CDS 30.0%
! GATAACTTTATCTAGGATTC+TGG + chr1.2:86508549-86508568 MS.gene74239:intron 30.0%
! TTGTTCGTTACACTTTGAAA+CGG - chr1.2:86506878-86506897 None:intergenic 30.0%
! TTTGATGTTTTCAATTGGAC+AGG + chr1.2:86507688-86507707 MS.gene74239:intron 30.0%
!! AAAGTCTTGTTATTGCTTTC+AGG + chr1.2:86508182-86508201 MS.gene74239:intron 30.0%
!! AACGTGTTATTTCTACTACT+AGG - chr1.2:86508618-86508637 None:intergenic 30.0%
!! ATAGTCTTATGAGTAAGCAT+GGG + chr1.2:86508291-86508310 MS.gene74239:CDS 30.0%
!! TGTTATTTCTACTACTAGGA+TGG - chr1.2:86508614-86508633 None:intergenic 30.0%
AAACAACAAAGCAATCCTCA+TGG - chr1.2:86507974-86507993 None:intergenic 35.0%
AACAACAAAGCAATCCTCAT+GGG - chr1.2:86507973-86507992 None:intergenic 35.0%
AACAAGAAACCAATTCTCAC+TGG + chr1.2:86507417-86507436 MS.gene74239:CDS 35.0%
AAGTACTAACCAGTGAGAAT+TGG - chr1.2:86507429-86507448 None:intergenic 35.0%
AGTTTGGATACCTTCACTTT+AGG - chr1.2:86508683-86508702 None:intergenic 35.0%
ATATCCTCCCATTGTTTCAA+TGG - chr1.2:86508788-86508807 None:intergenic 35.0%
ATCTGTTGCCATTGAAACAA+TGG + chr1.2:86508777-86508796 MS.gene74239:CDS 35.0%
CAAGATTCACGATTCTAGAT+AGG - chr1.2:86507569-86507588 None:intergenic 35.0%
CATGCAATCAATTCTTGTGA+TGG - chr1.2:86509285-86509304 None:intergenic 35.0%
CTCAATGTTTGAAAACCCTA+AGG - chr1.2:86507091-86507110 None:intergenic 35.0%
CTTAAACTCTTTACTTGCCT+AGG + chr1.2:86508639-86508658 MS.gene74239:intron 35.0%
CTTATTTCCTCAAAGTTACC+TGG + chr1.2:86509002-86509021 MS.gene74239:CDS 35.0%
CTTCATAATAACACGAGCAT+TGG + chr1.2:86509059-86509078 MS.gene74239:CDS 35.0%
GAACGACAATTCATGGAAAT+TGG + chr1.2:86508233-86508252 MS.gene74239:CDS 35.0%
GAATATAAGAAGGGTCAACA+TGG - chr1.2:86508271-86508290 None:intergenic 35.0%
GGATAATGAACGACAATTCA+TGG + chr1.2:86508226-86508245 MS.gene74239:CDS 35.0%
TAACTTGACTGCTAAAGATG+AGG + chr1.2:86509100-86509119 MS.gene74239:CDS 35.0%
TCACAAGAATTGATTGCATG+TGG + chr1.2:86509285-86509304 MS.gene74239:CDS 35.0%
TCTGTTGCCATTGAAACAAT+GGG + chr1.2:86508778-86508797 MS.gene74239:CDS 35.0%
TCTTTAGCAGTCAAGTTAGT+AGG - chr1.2:86509098-86509117 None:intergenic 35.0%
TGCAGTGTATTGTGGAAATA+TGG + chr1.2:86508205-86508224 MS.gene74239:CDS 35.0%
TGCTGATGAGTATGATACAT+TGG + chr1.2:86507338-86507357 MS.gene74239:CDS 35.0%
TTTGAAAACCCTAAGGAGTT+AGG - chr1.2:86507084-86507103 None:intergenic 35.0%
! ACAATTTCGGGGAGATATTT+TGG + chr1.2:86509452-86509471 MS.gene74239:CDS 35.0%
! AGAACTCATCTCTGTCTTTT+GGG + chr1.2:86508851-86508870 MS.gene74239:intron 35.0%
! AGTGAGAATTGGTTTCTTGT+TGG - chr1.2:86507418-86507437 None:intergenic 35.0%
! CTTAGGGTTTTCAAACATTG+AGG + chr1.2:86507089-86507108 MS.gene74239:CDS 35.0%
! GTGAGAATTGGTTTCTTGTT+GGG - chr1.2:86507417-86507436 None:intergenic 35.0%
! GTTTTCAATACAGGATTCTC+CGG - chr1.2:86509140-86509159 None:intergenic 35.0%
! TAGAACTCATCTCTGTCTTT+TGG + chr1.2:86508850-86508869 MS.gene74239:intron 35.0%
! TGATGATGATGATGATAGTG+AGG + chr1.2:86508349-86508368 MS.gene74239:CDS 35.0%
! TTGCAGTTAGATCTTTTTCC+AGG - chr1.2:86507794-86507813 None:intergenic 35.0%
!! ATTCTTGTGATGGTGTTTTC+AGG - chr1.2:86509275-86509294 None:intergenic 35.0%
!! CATAGTCTTATGAGTAAGCA+TGG + chr1.2:86508290-86508309 MS.gene74239:CDS 35.0%
!! TAATAACACGAGCATTGGTA+AGG + chr1.2:86509064-86509083 MS.gene74239:CDS 35.0%
!! TTATGAAAATGGGTTGAAGC+TGG - chr1.2:86508158-86508177 None:intergenic 35.0%
!!! GGAGAACCTAATTTTGATTC+TGG + chr1.2:86508413-86508432 MS.gene74239:CDS 35.0%
AAACCCTAAGGAGTTAGGTT+TGG - chr1.2:86507079-86507098 None:intergenic 40.0%
AAACTCTTTACTTGCCTAGG+TGG + chr1.2:86508642-86508661 MS.gene74239:intron 40.0%
AACCCTAAGGAGTTAGGTTT+GGG - chr1.2:86507078-86507097 None:intergenic 40.0%
AACTCTTTACTTGCCTAGGT+GGG + chr1.2:86508643-86508662 MS.gene74239:intron 40.0%
AAGACCAACAAGAACAACAC+CGG + chr1.2:86507174-86507193 MS.gene74239:CDS 40.0%
AAGACGGATGGGAATATCTT+AGG + chr1.2:86508444-86508463 MS.gene74239:CDS 40.0%
ACAAAGAAGCCTACAACACA+TGG - chr1.2:86507916-86507935 None:intergenic 40.0%
ACTTGGCAATATCAGGAATC+TGG - chr1.2:86508748-86508767 None:intergenic 40.0%
ATCTTGGAAGGCTTTCTTCT+TGG - chr1.2:86507153-86507172 None:intergenic 40.0%
ATGATTATGCTAGCATCCAG+AGG + chr1.2:86508372-86508391 MS.gene74239:CDS 40.0%
CACAATATGAGCTAACAAGC+AGG - chr1.2:86507664-86507683 None:intergenic 40.0%
CAGAATCTGTCACGTATTGA+AGG + chr1.2:86508945-86508964 MS.gene74239:intron 40.0%
CATGAAAAGCCATGTGTTGT+AGG + chr1.2:86507904-86507923 MS.gene74239:intron 40.0%
CGACAATTCATGGAAATTGG+TGG + chr1.2:86508236-86508255 MS.gene74239:CDS 40.0%
CTCAGAAACACACACACATA+TGG - chr1.2:86507510-86507529 None:intergenic 40.0%
CTTCAATACGTGACAGATTC+TGG - chr1.2:86508947-86508966 None:intergenic 40.0%
CTTGGCAATATCAGGAATCT+GGG - chr1.2:86508747-86508766 None:intergenic 40.0%
GAAGGCTTTCTTCTTGGTTT+GGG - chr1.2:86507147-86507166 None:intergenic 40.0%
GACATATCTGCATCTTCCAT+TGG - chr1.2:86507725-86507744 None:intergenic 40.0%
GGTGGACCAGAATCAAAATT+AGG - chr1.2:86508422-86508441 None:intergenic 40.0%
GTTTCAGCAACATTGAGACT+CGG - chr1.2:86509235-86509254 None:intergenic 40.0%
TAAAGCTGAACTGGATGATG+AGG + chr1.2:86509406-86509425 MS.gene74239:CDS 40.0%
TCCTGTATTGAAAACATCCG+TGG + chr1.2:86509145-86509164 MS.gene74239:CDS 40.0%
TTGATCAAAGGACCAGCAAT+TGG - chr1.2:86508500-86508519 None:intergenic 40.0%
TTGGCAATATCAGGAATCTG+GGG - chr1.2:86508746-86508765 None:intergenic 40.0%
TTTCAGCAACATTGAGACTC+GGG - chr1.2:86509234-86509253 None:intergenic 40.0%
! GAATTGGTTTCTTGTTGGGA+AGG - chr1.2:86507413-86507432 None:intergenic 40.0%
! GTTTTCAATTGGACAGGTGT+GGG + chr1.2:86507694-86507713 MS.gene74239:intron 40.0%
! TCCACGGATGTTTTCAATAC+AGG - chr1.2:86509149-86509168 None:intergenic 40.0%
! TGTTTTCAATTGGACAGGTG+TGG + chr1.2:86507693-86507712 MS.gene74239:intron 40.0%
!! AATCTTGTTGTTTCCGGTGA+CGG - chr1.2:86506971-86506990 None:intergenic 40.0%
!! AGCAGCAATCTTGTTGTTTC+CGG - chr1.2:86506977-86506996 None:intergenic 40.0%
!! GTTCTTGTTGGTCTTCATCT+TGG - chr1.2:86507169-86507188 None:intergenic 40.0%
!! TTGTTGGTCTTCATCTTGGA+AGG - chr1.2:86507165-86507184 None:intergenic 40.0%
ACTCCCAAACCTAACTCCTT+AGG + chr1.2:86507072-86507091 MS.gene74239:CDS 45.0%
AGATATTCCCATCCGTCTTC+TGG - chr1.2:86508443-86508462 None:intergenic 45.0%
AGCAAAAGCAGATTGAAGCG+CGG - chr1.2:86507322-86507341 None:intergenic 45.0%
AGGCAAGAAGAAACGTCTCT+TGG + chr1.2:86507017-86507036 MS.gene74239:CDS 45.0%
ATGAATCAGCAAAGGGAACC+TGG + chr1.2:86507773-86507792 MS.gene74239:intron 45.0%
CAGCAACAACAACAACTCGA+AGG + chr1.2:86506997-86507016 MS.gene74239:CDS 45.0%
CCCTAGGATTGTTGAAAGCA+GGG - chr1.2:86509198-86509217 None:intergenic 45.0%
CCCTGCTTTCAACAATCCTA+GGG + chr1.2:86509195-86509214 MS.gene74239:CDS 45.0%
CCTAGGATTGTTGAAAGCAG+GGG - chr1.2:86509197-86509216 None:intergenic 45.0%
CTAACAAGCAGGAGACTGTT+GGG - chr1.2:86507653-86507672 None:intergenic 45.0%
CTCCCAAACCTAACTCCTTA+GGG + chr1.2:86507073-86507092 MS.gene74239:CDS 45.0%
GCTTTCAACAATCCTAGGGA+TGG + chr1.2:86509199-86509218 MS.gene74239:CDS 45.0%
GGAAGGCTTTCTTCTTGGTT+TGG - chr1.2:86507148-86507167 None:intergenic 45.0%
GGTTTCTTGTTGGGAAGGAA+CGG - chr1.2:86507408-86507427 None:intergenic 45.0%
GTTGCCATTGAAACAATGGG+AGG + chr1.2:86508781-86508800 MS.gene74239:CDS 45.0%
TCAGGACACTTGGCAATATC+AGG - chr1.2:86508755-86508774 None:intergenic 45.0%
TCCCTAGGATTGTTGAAAGC+AGG - chr1.2:86509199-86509218 None:intergenic 45.0%
TCTCTCAGCAGCACAAATTC+TGG + chr1.2:86507283-86507302 MS.gene74239:CDS 45.0%
TTCAATACAGGATTCTCCGG+AGG - chr1.2:86509137-86509156 None:intergenic 45.0%
TTCAATGGCAACAGATGCTC+AGG - chr1.2:86508773-86508792 None:intergenic 45.0%
TTGTAGATTGCCAGAATGCG+TGG - chr1.2:86508979-86508998 None:intergenic 45.0%
! CTTTCAGGTGCAGTGTATTG+TGG + chr1.2:86508197-86508216 MS.gene74239:intron 45.0%
! GCTGCTACTAGTTTGATCCA+CGG - chr1.2:86509165-86509184 None:intergenic 45.0%
!! ACTTCCGGTGTTGTTCTTGT+TGG - chr1.2:86507181-86507200 None:intergenic 45.0%
AACTGTCAGCTGCCAATTGC+TGG + chr1.2:86508485-86508504 MS.gene74239:intron 50.0%
ATTTGATGTGCCTCCCACCT+AGG - chr1.2:86508659-86508678 None:intergenic 50.0%
CAACAGATGCTCAGGACACT+TGG - chr1.2:86508765-86508784 None:intergenic 50.0%
CCAGTTCAGCTTTACCAGCA+CGG - chr1.2:86509400-86509419 None:intergenic 50.0%
CCCCTGCTTTCAACAATCCT+AGG + chr1.2:86509194-86509213 MS.gene74239:CDS 50.0%
GATTCTGGTCCACCAGAAGA+CGG + chr1.2:86508428-86508447 MS.gene74239:CDS 50.0%
GATTGTTGAAAGCAGGGGAG+TGG - chr1.2:86509192-86509211 None:intergenic 50.0%
GCACAAGTGTCTGCATCTAG+TGG - chr1.2:86509341-86509360 None:intergenic 50.0%
GCTAACAAGCAGGAGACTGT+TGG - chr1.2:86507654-86507673 None:intergenic 50.0%
GGGAATATCTTAGGCGTGTC+AGG + chr1.2:86508453-86508472 MS.gene74239:CDS 50.0%
GTCATACAGTAGCACCCATG+AGG + chr1.2:86507956-86507975 MS.gene74239:intron 50.0%
GTTAGGTTTGGGAGTAGCGA+TGG - chr1.2:86507067-86507086 None:intergenic 50.0%
TATTCCCATCCGTCTTCTGG+TGG - chr1.2:86508440-86508459 None:intergenic 50.0%
TCTTTACTTGCCTAGGTGGG+AGG + chr1.2:86508646-86508665 MS.gene74239:intron 50.0%
TTGTTGGGAAGGAACGGAAG+AGG - chr1.2:86507402-86507421 None:intergenic 50.0%
! ACGGTTGTTGTTGTGAGCAG+CGG - chr1.2:86507373-86507392 None:intergenic 50.0%
! CTTGTCAGTGCTGCTACTTC+CGG - chr1.2:86507196-86507215 None:intergenic 50.0%
! GAAGTACTCTCGCGAGATGA+TGG + chr1.2:86507239-86507258 MS.gene74239:CDS 50.0%
!! GCGAGATGATGGAGTCTATG+AGG + chr1.2:86507250-86507269 MS.gene74239:CDS 50.0%
AAGTGTGCTAGCATCCGTGC+TGG + chr1.2:86509383-86509402 MS.gene74239:CDS 55.0%
AGGTTTGGGAGTAGCGATGG+TGG - chr1.2:86507064-86507083 None:intergenic 55.0%
CAGACACTTGTGCTGCACTC+CGG + chr1.2:86509348-86509367 MS.gene74239:CDS 55.0%
GGTTCAAGTGCCACGCATTC+TGG + chr1.2:86508966-86508985 MS.gene74239:CDS 55.0%
TACAGGATTCTCCGGAGGCA+CGG - chr1.2:86509132-86509151 None:intergenic 55.0%
TCTCCGTCTACCTGAAACGC+AGG - chr1.2:86508398-86508417 None:intergenic 55.0%
TGGTCCACCAGAAGACGGAT+GGG + chr1.2:86508433-86508452 MS.gene74239:CDS 55.0%
! AGGCCTGCGTTTCAGGTAGA+CGG + chr1.2:86508392-86508411 MS.gene74239:CDS 55.0%
! CCGTGCTGGTAAAGCTGAAC+TGG + chr1.2:86509397-86509416 MS.gene74239:CDS 55.0%
! GGAACGGAAGAGGAGTGTGA+CGG - chr1.2:86507392-86507411 None:intergenic 55.0%
! GTTGTTGTTGTGAGCAGCGG+CGG - chr1.2:86507370-86507389 None:intergenic 55.0%
!! CTTGTTGTTTCCGGTGACGG+TGG - chr1.2:86506968-86506987 None:intergenic 55.0%
CACACTTCCGCAGCAGACTC+CGG - chr1.2:86509370-86509389 None:intergenic 60.0%
CATCCAGAGGCCTGCGTTTC+AGG + chr1.2:86508385-86508404 MS.gene74239:CDS 60.0%
CTACCTGAAACGCAGGCCTC+TGG - chr1.2:86508391-86508410 None:intergenic 60.0%
CTGGTCCACCAGAAGACGGA+TGG + chr1.2:86508432-86508451 MS.gene74239:CDS 60.0%
GGGCTACAGAGTCCATCCCT+AGG - chr1.2:86509214-86509233 None:intergenic 60.0%
TGAGGATAGCACCGTGCCTC+CGG + chr1.2:86509118-86509137 MS.gene74239:CDS 60.0%
! ACAGGTGTGGGTGCTGCCAA+TGG + chr1.2:86507706-86507725 MS.gene74239:intron 60.0%
! GTTGTTTCCGGTGACGGTGG+CGG - chr1.2:86506965-86506984 None:intergenic 60.0%
CTGCACTCCGGAGTCTGCTG+CGG + chr1.2:86509360-86509379 MS.gene74239:CDS 65.0%
GATGATGCCGCCACCGTCAC+CGG + chr1.2:86506955-86506974 MS.gene74239:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 86506862 86509490 86506862 ID=MS.gene74239
chr1.2 mRNA 86506862 86509490 86506862 ID=MS.gene74239.t1;Parent=MS.gene74239
chr1.2 exon 86506862 86507438 86506862 ID=MS.gene74239.t1.exon1;Parent=MS.gene74239.t1
chr1.2 CDS 86506862 86507438 86506862 ID=cds.MS.gene74239.t1;Parent=MS.gene74239.t1
chr1.2 exon 86508204 86508474 86508204 ID=MS.gene74239.t1.exon2;Parent=MS.gene74239.t1
chr1.2 CDS 86508204 86508474 86508204 ID=cds.MS.gene74239.t1;Parent=MS.gene74239.t1
chr1.2 exon 86508661 86508838 86508661 ID=MS.gene74239.t1.exon3;Parent=MS.gene74239.t1
chr1.2 CDS 86508661 86508838 86508661 ID=cds.MS.gene74239.t1;Parent=MS.gene74239.t1
chr1.2 exon 86508948 86509490 86508948 ID=MS.gene74239.t1.exon4;Parent=MS.gene74239.t1
chr1.2 CDS 86508948 86509490 86508948 ID=cds.MS.gene74239.t1;Parent=MS.gene74239.t1
Gene Sequence

>MS.gene74239

ATGGCTGAATTAACCGTTTCAAAGTGTAACGAACAACAACAACAAGAAGAAGAAGAACTCGTCGTCAACAAGATTCAAATTGATGATGATGATGATGATGCCGCCACCGTCACCGGAAACAACAAGATTGCTGCTCAGCAACAACAACAACTCGAAGGCAAGAAGAAACGTCTCTTGGAAGAACTCGAATCTGTTTTCACCACCATCGCTACTCCCAAACCTAACTCCTTAGGGTTTTCAAACATTGAGGTCATTGATGAAACTGCTTTGCTCGATTGCATTCCCAAACCAAGAAGAAAGCCTTCCAAGATGAAGACCAACAAGAACAACACCGGAAGTAGCAGCACTGACAAGATGATGATGATGATGAAGAAGAAGAAGTACTCTCGCGAGATGATGGAGTCTATGAGGTTTGTGAATGTCTCTCAGCAGCACAAATTCTGGAAAACAGTCTACACCGCGCTTCAATCTGCTTTTGCTGATGAGTATGATACATTGGTCGTTGCCGCCGCTGCTCACAACAACAACCGTCACACTCCTCTTCCGTTCCTTCCCAACAAGAAACCAATTCTCACTGGTTAGTACTTTTTTTTTTCTTTCTTTCTTTCTTGCATAATCATATTCGATTCTTTTGAATTCTTGATTCCATATGTGTGTGTGTTTCTGAGATTCACTCCATATTGTGTTTGTATTATTAATTTAAGCCTATCTAGAATCGTGAATCTTGATCATTCTTTTCTTTGTAATGAAACTGTGTAAAACTTAATTGCTCTGATTTTTTTTGTGTGCCCAACAGTCTCCTGCTTGTTAGCTCATATTGTGTCAATTTGATGTTTTCAATTGGACAGGTGTGGGTGCTGCCAATGGAAGATGCAGATATGTCAATGTCTTTGTCCATTGAACTTTCAAGAATGAATCAGCAAAGGGAACCTGGAAAAAGATCTAACTGCAACATTACTTCACTATGTTCCATTTTTTTTCTTTCTTTTTTGTACTTAGGCACTGATTTCAGTTGCATAGCTACTTGTATAAAGTCACTGTACATGAAAAGCCATGTGTTGTAGGCTTCTTTGTAAATTTGAAACACTACTTAGGTCATACAGTAGCACCCATGAGGATTGCTTTGTTGTTTACACTTGTATATTGTTCATTTTTCAATAAAAAAGTTCATTTTTCTGTCTACATTGTGTTTGAATGAGTACACTTTTTGCCTGATTATTATTGAGTTTTCATGTTATTGCTTTATAAAGTTCAATTTGATGTTGTTGCTTGTTTGTGAATTATATTTTTATTCCAGCTTCAACCCATTTTCATAAGCTGAAAGTCTTGTTATTGCTTTCAGGTGCAGTGTATTGTGGAAATATGGATAATGAACGACAATTCATGGAAATTGGTGGAAGTGTGAGCCATGTTGACCCTTCTTATATTCATAGTCTTATGAGTAAGCATGGGTGCTCAGTTTCAGAAGAGTGCATTGAAAATGATGATGATGATGATGATGATAGTGAGGATGATTATGCTAGCATCCAGAGGCCTGCGTTTCAGGTAGACGGAGAACCTAATTTTGATTCTGGTCCACCAGAAGACGGATGGGAATATCTTAGGCGTGTCAGGTATTGTTGTAACTGTCAGCTGCCAATTGCTGGTCCTTTGATCAATTTATGCTTTAAAATTTTATTTTCTTCATGATAACTTTATCTAGGATTCTGGTTTGTTAAATGACTGTGAGTAGATAAAACTTCACTGTTTCCATCCTAGTAGTAGAAATAACACGTTTCTTAAACTCTTTACTTGCCTAGGTGGGAGGCACATCAAATTCCTAAAGTGAAGGTATCCAAACTTGATAGAAGTAAACTTAACAAGGAGCAAAGTGCTTATATGCCCCAGATTCCTGATATTGCCAAGTGTCCTGAGCATCTGTTGCCATTGAAACAATGGGAGGATATATTTCTTGCAGAATTTTCAGTACTAAGAGAGGTATAGTGTTCTAGAACTCATCTCTGTCTTTTGGGAGTGAAGTGTGCTGATTTTTGTTTAATAGTATATACTAAGGACTGACCCTTGTTTCCCAATTTTGTTATTCCAGAATCTGTCACGTATTGAAGGTTCAAGTGCCACGCATTCTGGCAATCTACAATCTCTTATTTCCTCAAAGTTACCTGGAAATAATTTTGGAGTGATGAACAGAGATGTGCTACTTCATAATAACACGAGCATTGGTAAGGCTGATCAACCTACTAACTTGACTGCTAAAGATGAGGATAGCACCGTGCCTCCGGAGAATCCTGTATTGAAAACATCCGTGGATCAAACTAGTAGCAGCTGTTCCACTCCCCTGCTTTCAACAATCCTAGGGATGGACTCTGTAGCCCGAGTCTCAATGTTGCTGAAACGAATTCGTTTGCTAGAGCCTGAAAACACCATCACAAGAATTGATTGCATGTGGCTTTTTGCTCTCTGTGCAGCAGTAGATGCTCCACTAGATGCAGACACTTGTGCTGCACTCCGGAGTCTGCTGCGGAAGTGTGCTAGCATCCGTGCTGGTAAAGCTGAACTGGATGATGAGGTTGTAATGTTGAATATATTGGCTACAATTTCGGGGAGATATTTTGGACAATCTGAAAATTGA
Protein sequence

>MS.gene74239.t1

MAELTVSKCNEQQQQEEEELVVNKIQIDDDDDDAATVTGNNKIAAQQQQQLEGKKKRLLEELESVFTTIATPKPNSLGFSNIEVIDETALLDCIPKPRRKPSKMKTNKNNTGSSSTDKMMMMMKKKKYSREMMESMRFVNVSQQHKFWKTVYTALQSAFADEYDTLVVAAAAHNNNRHTPLPFLPNKKPILTGAVYCGNMDNERQFMEIGGSVSHVDPSYIHSLMSKHGCSVSEECIENDDDDDDDSEDDYASIQRPAFQVDGEPNFDSGPPEDGWEYLRRVRWEAHQIPKVKVSKLDRSKLNKEQSAYMPQIPDIAKCPEHLLPLKQWEDIFLAEFSVLRENLSRIEGSSATHSGNLQSLISSKLPGNNFGVMNRDVLLHNNTSIGKADQPTNLTAKDEDSTVPPENPVLKTSVDQTSSSCSTPLLSTILGMDSVARVSMLLKRIRLLEPENTITRIDCMWLFALCAAVDAPLDADTCAALRSLLRKCASIRAGKAELDDEVVMLNILATISGRYFGQSEN