AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046159

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046159.t1 MTR_1g116530 92.308 390 25 3 1 390 137 521 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046159.t1 AT1G54380 37.852 391 157 9 1 387 204 512 2.70e-72 235
MS.gene046159.t1 AT2G42510 38.251 183 51 5 1 182 388 509 9.16e-27 112
MS.gene046159.t1 AT2G42510 76.119 67 15 1 117 182 425 491 9.74e-26 108

Find 93 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCAGAGGCCTGCGTTTC+AGG 0.095865 1.3:+79447167 MS.gene046159:CDS
ACAATTTCGGGGAGATATTT+TGG 0.150062 1.3:+79448234 MS.gene046159:CDS
AATATATTGGCTACAATTTC+GGG 0.157564 1.3:+79448222 MS.gene046159:CDS
AAGTTACCTGGAAATAATTT+TGG 0.208567 1.3:+79447796 MS.gene046159:CDS
GAATATATTGGCTACAATTT+CGG 0.218549 1.3:+79448221 MS.gene046159:CDS
TCTCTCAGCAGCACAAATTC+TGG 0.272998 1.3:+79445974 MS.gene046159:CDS
GGTTCAAGTGCCACGCATTC+TGG 0.282581 1.3:+79447748 MS.gene046159:CDS
GAACGACAATTCATGGAAAT+TGG 0.288736 1.3:+79447015 MS.gene046159:CDS
GGTGGACCAGAATCAAAATT+AGG 0.292136 1.3:-79447201 None:intergenic
AGTTTGGATACCTTCACTTT+AGG 0.303255 1.3:-79447462 None:intergenic
ATCACTCCAAAATTATTTCC+AGG 0.334285 1.3:-79447802 None:intergenic
TCTTTAGCAGTCAAGTTAGT+AGG 0.341512 1.3:-79447877 None:intergenic
AGATATTCCCATCCGTCTTC+TGG 0.348856 1.3:-79447222 None:intergenic
AAGTTTACTTCTATCAAGTT+TGG 0.350512 1.3:-79447478 None:intergenic
TCAGGACACTTGGCAATATC+AGG 0.356178 1.3:-79447534 None:intergenic
TGCAGTGTATTGTGGAAATA+TGG 0.360062 1.3:+79446987 MS.gene046159:CDS
GGATAATGAACGACAATTCA+TGG 0.363389 1.3:+79447008 MS.gene046159:CDS
ACTTGGCAATATCAGGAATC+TGG 0.365174 1.3:-79447527 None:intergenic
GGTTGTAATGTTGAATATAT+TGG 0.370085 1.3:+79448209 MS.gene046159:CDS
CCGTGCTGGTAAAGCTGAAC+TGG 0.379253 1.3:+79448179 MS.gene046159:CDS
AAGACGGATGGGAATATCTT+AGG 0.380050 1.3:+79447226 MS.gene046159:CDS
GGGAATATCTTAGGCGTGTC+AGG 0.399604 1.3:+79447235 MS.gene046159:CDS
GTGAGAATTGGTTTCTTGTT+GGG 0.410292 1.3:-79446105 None:intergenic
CTACCTGAAACGCAGGCCTC+TGG 0.412069 1.3:-79447170 None:intergenic
ATATCCTCCCATTGTTTCAA+TGG 0.412617 1.3:-79447567 None:intergenic
GAGTACTAACCAGTGAGAAT+TGG 0.421352 1.3:-79446117 None:intergenic
CTTATTTCCTCAAAGTTACC+TGG 0.429187 1.3:+79447784 MS.gene046159:CDS
CCCCTGCTTTCAACAATCCT+AGG 0.446314 1.3:+79447976 MS.gene046159:CDS
ATTATTTCCAGGTAACTTTG+AGG 0.459577 1.3:-79447791 None:intergenic
TTCAATGGCAACAGATGCTC+AGG 0.464041 1.3:-79447552 None:intergenic
CTTGGCAATATCAGGAATCT+GGG 0.464802 1.3:-79447526 None:intergenic
ATAAGACTATGAATATAAGA+AGG 0.479113 1.3:-79447060 None:intergenic
AGTGAGAATTGGTTTCTTGT+TGG 0.480721 1.3:-79446106 None:intergenic
TCCCTAGGATTGTTGAAAGC+AGG 0.480836 1.3:-79447978 None:intergenic
TGAGGATAGCACCGTGCCTC+CGG 0.486698 1.3:+79447900 MS.gene046159:CDS
CAGAATCTGTCACGTATTGA+AGG 0.488568 1.3:+79447727 MS.gene046159:intron
CATAGTCTTATGAGTAAGCA+TGG 0.500514 1.3:+79447072 MS.gene046159:CDS
CAACAGATGCTCAGGACACT+TGG 0.502613 1.3:-79447544 None:intergenic
CTTTCAGGTGCAGTGTATTG+TGG 0.521928 1.3:+79446979 MS.gene046159:intron
ATCTGTTGCCATTGAAACAA+TGG 0.523105 1.3:+79447559 MS.gene046159:CDS
TCTGTTGCCATTGAAACAAT+GGG 0.525124 1.3:+79447560 MS.gene046159:CDS
CTTCATAATAACACGAGCAT+TGG 0.532195 1.3:+79447841 MS.gene046159:CDS
GATTGTTGAAAGCAGGGGAG+TGG 0.532703 1.3:-79447971 None:intergenic
CACACTTCCGCAGCAGACTC+CGG 0.533825 1.3:-79448149 None:intergenic
GTTGTTGTTGTGAGCAGCGG+CGG 0.534294 1.3:-79446058 None:intergenic
CCCTAGGATTGTTGAAAGCA+GGG 0.537138 1.3:-79447977 None:intergenic
TTTCAGCAACATTGAGACTC+GGG 0.544817 1.3:-79448013 None:intergenic
CGACAATTCATGGAAATTGG+TGG 0.550323 1.3:+79447018 MS.gene046159:CDS
TTGTTGGGAAGGAACGGAAG+AGG 0.550366 1.3:-79446090 None:intergenic
GAATTGGTTTCTTGTTGGGA+AGG 0.550414 1.3:-79446101 None:intergenic
CTGGTCCACCAGAAGACGGA+TGG 0.561101 1.3:+79447214 MS.gene046159:CDS
TAATAACACGAGCATTGGTA+AGG 0.562700 1.3:+79447846 MS.gene046159:CDS
TGCTGATGAGTATGATACAT+TGG 0.568733 1.3:+79446029 MS.gene046159:CDS
CCCTGCTTTCAACAATCCTA+GGG 0.569746 1.3:+79447977 MS.gene046159:CDS
GCACAAGTGTCTGCATCTAG+TGG 0.569910 1.3:-79448120 None:intergenic
CTGCACTCCGGAGTCTGCTG+CGG 0.570655 1.3:+79448142 MS.gene046159:CDS
AACAAGAAACCAATTCTCAC+TGG 0.572694 1.3:+79446108 MS.gene046159:CDS
TATTCCCATCCGTCTTCTGG+TGG 0.573091 1.3:-79447219 None:intergenic
TACAGGATTCTCCGGAGGCA+CGG 0.575594 1.3:-79447911 None:intergenic
GTTTCAGCAACATTGAGACT+CGG 0.575650 1.3:-79448014 None:intergenic
GGTTTCTTGTTGGGAAGGAA+CGG 0.577664 1.3:-79446096 None:intergenic
GATTCTGGTCCACCAGAAGA+CGG 0.580030 1.3:+79447210 MS.gene046159:CDS
GCGAGATGATGGAGTCTATG+AGG 0.581842 1.3:+79445941 None:intergenic
TTGTAGATTGCCAGAATGCG+TGG 0.584277 1.3:-79447758 None:intergenic
AAGTGTGCTAGCATCCGTGC+TGG 0.589286 1.3:+79448165 MS.gene046159:CDS
AGGCCTGCGTTTCAGGTAGA+CGG 0.590675 1.3:+79447174 MS.gene046159:CDS
TCTTTACTTGCCTAGGTGGG+AGG 0.592344 1.3:+79447428 MS.gene046159:intron
CCAGTTCAGCTTTACCAGCA+CGG 0.594914 1.3:-79448179 None:intergenic
GCTTTCAACAATCCTAGGGA+TGG 0.595935 1.3:+79447981 MS.gene046159:CDS
TCTCCGTCTACCTGAAACGC+AGG 0.596684 1.3:-79447177 None:intergenic
CAGACACTTGTGCTGCACTC+CGG 0.597128 1.3:+79448130 MS.gene046159:CDS
TCCTGTATTGAAAACATCCG+TGG 0.601385 1.3:+79447927 MS.gene046159:CDS
CATGCAATCAATTCTTGTGA+TGG 0.606582 1.3:-79448064 None:intergenic
TCACAAGAATTGATTGCATG+TGG 0.606890 1.3:+79448067 MS.gene046159:CDS
TAAGACTATGAATATAAGAA+GGG 0.614920 1.3:-79447059 None:intergenic
ATATCAAATTCCTAAAGTGA+AGG 0.623520 1.3:+79447452 MS.gene046159:CDS
GAATATAAGAAGGGTCAACA+TGG 0.624666 1.3:-79447050 None:intergenic
TGGTCCACCAGAAGACGGAT+GGG 0.631512 1.3:+79447215 MS.gene046159:CDS
TAACTTGACTGCTAAAGATG+AGG 0.640802 1.3:+79447882 MS.gene046159:CDS
TGATAGAAGTAAACTTAACA+AGG 0.642496 1.3:+79447485 MS.gene046159:CDS
CCTAGGATTGTTGAAAGCAG+GGG 0.642812 1.3:-79447976 None:intergenic
GGGCTACAGAGTCCATCCCT+AGG 0.642846 1.3:-79447993 None:intergenic
ACGGTTGTTGTTGTGAGCAG+CGG 0.643869 1.3:-79446061 None:intergenic
ATGATTATGCTAGCATCCAG+AGG 0.651012 1.3:+79447154 MS.gene046159:CDS
TTCAATACAGGATTCTCCGG+AGG 0.653479 1.3:-79447916 None:intergenic
ATAGTCTTATGAGTAAGCAT+GGG 0.654464 1.3:+79447073 MS.gene046159:CDS
TAAAGCTGAACTGGATGATG+AGG 0.657096 1.3:+79448188 MS.gene046159:CDS
GCTGCTACTAGTTTGATCCA+CGG 0.659357 1.3:-79447944 None:intergenic
ATATATTGGCTACAATTTCG+GGG 0.666684 1.3:+79448223 MS.gene046159:CDS
GGAACGGAAGAGGAGTGTGA+CGG 0.680159 1.3:-79446080 None:intergenic
TTGGCAATATCAGGAATCTG+GGG 0.686299 1.3:-79447525 None:intergenic
AGCAAAAGCAGATTGAAGCG+CGG 0.711511 1.3:-79446010 None:intergenic
GTTGCCATTGAAACAATGGG+AGG 0.739891 1.3:+79447563 MS.gene046159:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAGAAAGAAAAAAAA+TGG - chr1.3:79446616-79446635 None:intergenic 15.0%
!! TTAATAATACAAACACAATA+TGG - chr1.3:79446232-79446251 None:intergenic 15.0%
!! TTGTTTAATAGTATATACTA+AGG + chr1.3:79447674-79447693 MS.gene046159:intron 15.0%
!! ATAAGACTATGAATATAAGA+AGG - chr1.3:79447063-79447082 None:intergenic 20.0%
!! ATGAAAACTCAATAATAATC+AGG - chr1.3:79446857-79446876 None:intergenic 20.0%
!! TAAGACTATGAATATAAGAA+GGG - chr1.3:79447062-79447081 None:intergenic 20.0%
!! TTAAAGCATAAATTGATCAA+AGG - chr1.3:79447294-79447313 None:intergenic 20.0%
!!! GCAATTAAGTTTTACATATT+TGG - chr1.3:79446394-79446413 None:intergenic 20.0%
!!! TTTCTTTCTTTTTTGTACTT+AGG + chr1.3:79446621-79446640 MS.gene046159:intron 20.0%
! AAAAAATCAGAATAGCAGAA+AGG - chr1.3:79446314-79446333 None:intergenic 25.0%
! AAGTTTACTTCTATCAAGTT+TGG - chr1.3:79447481-79447500 None:intergenic 25.0%
! AATAACAAAATTGGGAAACA+AGG - chr1.3:79447706-79447725 None:intergenic 25.0%
! ATAACAAAATTGGGAAACAA+GGG - chr1.3:79447705-79447724 None:intergenic 25.0%
! ATATCAAATTCCTAAAGTGA+AGG + chr1.3:79447452-79447471 MS.gene046159:CDS 25.0%
! ATTCATTCTTGAAAGTTCAA+TGG - chr1.3:79446541-79446560 None:intergenic 25.0%
! GGTTGTAATGTTGAATATAT+TGG + chr1.3:79448209-79448228 MS.gene046159:CDS 25.0%
! TCTTCATGATAACTTTATCT+AGG + chr1.3:79447324-79447343 MS.gene046159:intron 25.0%
! TCTTTGCTTCTAATTTCATT+GGG + chr1.3:79446286-79446305 MS.gene046159:intron 25.0%
! TGATAGAAGTAAACTTAACA+AGG + chr1.3:79447485-79447504 MS.gene046159:CDS 25.0%
! TTCTTTGCTTCTAATTTCAT+TGG + chr1.3:79446285-79446304 MS.gene046159:intron 25.0%
!! AAGTTACCTGGAAATAATTT+TGG + chr1.3:79447796-79447815 MS.gene046159:CDS 25.0%
!! AATATATTGGCTACAATTTC+GGG + chr1.3:79448222-79448241 MS.gene046159:CDS 25.0%
!! GAATATATTGGCTACAATTT+CGG + chr1.3:79448221-79448240 MS.gene046159:CDS 25.0%
!! GTAAATTTGAAACACTACTT+AGG + chr1.3:79446716-79446735 MS.gene046159:intron 25.0%
!! GTCAATTTGATGTTTTCAAT+TGG + chr1.3:79446465-79446484 MS.gene046159:intron 25.0%
!!! AGATTCTGGAATAACAAAAT+TGG - chr1.3:79447715-79447734 None:intergenic 25.0%
!!! GATTCTGGAATAACAAAATT+GGG - chr1.3:79447714-79447733 None:intergenic 25.0%
!!! TTCTGCTATTCTGATTTTTT+TGG + chr1.3:79446314-79446333 MS.gene046159:intron 25.0%
AGACTTTCAGCTTATGAAAA+TGG - chr1.3:79446951-79446970 None:intergenic 30.0%
ATCACTCCAAAATTATTTCC+AGG - chr1.3:79447805-79447824 None:intergenic 30.0%
ATTATTTCCAGGTAACTTTG+AGG - chr1.3:79447794-79447813 None:intergenic 30.0%
GACTTTCAGCTTATGAAAAT+GGG - chr1.3:79446950-79446969 None:intergenic 30.0%
TTCAAGAATGAATCAGCAAA+GGG + chr1.3:79446548-79446567 MS.gene046159:intron 30.0%
TTTCAAGAATGAATCAGCAA+AGG + chr1.3:79446547-79446566 MS.gene046159:intron 30.0%
TTTGGATAAAGTGCAATGTT+TGG + chr1.3:79446332-79446351 MS.gene046159:intron 30.0%
! AGAATTTTCAGTACTAAGAG+AGG + chr1.3:79447599-79447618 MS.gene046159:CDS 30.0%
! ATATATTGGCTACAATTTCG+GGG + chr1.3:79448223-79448242 MS.gene046159:CDS 30.0%
! GATAACTTTATCTAGGATTC+TGG + chr1.3:79447331-79447350 MS.gene046159:intron 30.0%
! TTTGATGTTTTCAATTGGAC+AGG + chr1.3:79446470-79446489 MS.gene046159:intron 30.0%
!! AAAGTCTTGTTATTGCTTTC+AGG + chr1.3:79446964-79446983 MS.gene046159:intron 30.0%
!! AACGTGTTATTTCTACTACT+AGG - chr1.3:79447400-79447419 None:intergenic 30.0%
!! ATAGTCTTATGAGTAAGCAT+GGG + chr1.3:79447073-79447092 MS.gene046159:CDS 30.0%
!! GATTCTGGTTTGTTAAATGA+CGG + chr1.3:79447346-79447365 MS.gene046159:intron 30.0%
!! TGTTATTTCTACTACTAGGA+AGG - chr1.3:79447396-79447415 None:intergenic 30.0%
AAACAACAAAGCAATCCTCA+TGG - chr1.3:79446756-79446775 None:intergenic 35.0%
AACAACAAAGCAATCCTCAT+GGG - chr1.3:79446755-79446774 None:intergenic 35.0%
AACAAGAAACCAATTCTCAC+TGG + chr1.3:79446108-79446127 MS.gene046159:CDS 35.0%
AGTTTGGATACCTTCACTTT+AGG - chr1.3:79447465-79447484 None:intergenic 35.0%
ATATCCTCCCATTGTTTCAA+TGG - chr1.3:79447570-79447589 None:intergenic 35.0%
ATCTGTTGCCATTGAAACAA+TGG + chr1.3:79447559-79447578 MS.gene046159:CDS 35.0%
CAAGATTCACGATTCTAGAT+AGG - chr1.3:79446261-79446280 None:intergenic 35.0%
CATGCAATCAATTCTTGTGA+TGG - chr1.3:79448067-79448086 None:intergenic 35.0%
CTTAAACTCTTTACTTGCCT+AGG + chr1.3:79447421-79447440 MS.gene046159:intron 35.0%
CTTATTTCCTCAAAGTTACC+TGG + chr1.3:79447784-79447803 MS.gene046159:CDS 35.0%
CTTCATAATAACACGAGCAT+TGG + chr1.3:79447841-79447860 MS.gene046159:CDS 35.0%
GAACGACAATTCATGGAAAT+TGG + chr1.3:79447015-79447034 MS.gene046159:CDS 35.0%
GAATATAAGAAGGGTCAACA+TGG - chr1.3:79447053-79447072 None:intergenic 35.0%
GGATAATGAACGACAATTCA+TGG + chr1.3:79447008-79447027 MS.gene046159:CDS 35.0%
TAACTTGACTGCTAAAGATG+AGG + chr1.3:79447882-79447901 MS.gene046159:CDS 35.0%
TCACAAGAATTGATTGCATG+TGG + chr1.3:79448067-79448086 MS.gene046159:CDS 35.0%
TCTGTTGCCATTGAAACAAT+GGG + chr1.3:79447560-79447579 MS.gene046159:CDS 35.0%
TCTTTAGCAGTCAAGTTAGT+AGG - chr1.3:79447880-79447899 None:intergenic 35.0%
TGCAGTGTATTGTGGAAATA+TGG + chr1.3:79446987-79447006 MS.gene046159:CDS 35.0%
TGCTGATGAGTATGATACAT+TGG + chr1.3:79446029-79446048 MS.gene046159:CDS 35.0%
! ACAATTTCGGGGAGATATTT+TGG + chr1.3:79448234-79448253 MS.gene046159:CDS 35.0%
! AGAACTCATCTCTGTCTTTT+GGG + chr1.3:79447633-79447652 MS.gene046159:intron 35.0%
! AGTGAGAATTGGTTTCTTGT+TGG - chr1.3:79446109-79446128 None:intergenic 35.0%
! GTGAGAATTGGTTTCTTGTT+GGG - chr1.3:79446108-79446127 None:intergenic 35.0%
! GTTTTCAATACAGGATTCTC+CGG - chr1.3:79447922-79447941 None:intergenic 35.0%
! TAGAACTCATCTCTGTCTTT+TGG + chr1.3:79447632-79447651 MS.gene046159:intron 35.0%
! TGATGATGATGATGATAGTG+AGG + chr1.3:79447131-79447150 MS.gene046159:CDS 35.0%
! TTGCAGTTAGATCTTTTTCC+AGG - chr1.3:79446576-79446595 None:intergenic 35.0%
!! ATTCTTGTGATGGTGTTTTC+AGG - chr1.3:79448057-79448076 None:intergenic 35.0%
!! CATAGTCTTATGAGTAAGCA+TGG + chr1.3:79447072-79447091 MS.gene046159:CDS 35.0%
!! TAATAACACGAGCATTGGTA+AGG + chr1.3:79447846-79447865 MS.gene046159:CDS 35.0%
!! TTATGAAAATGGGTTGAAGC+TGG - chr1.3:79446940-79446959 None:intergenic 35.0%
!!! GGAGAACCTAATTTTGATTC+TGG + chr1.3:79447195-79447214 MS.gene046159:CDS 35.0%
AAACTCTTTACTTGCCTAGG+TGG + chr1.3:79447424-79447443 MS.gene046159:intron 40.0%
AACTCTTTACTTGCCTAGGT+GGG + chr1.3:79447425-79447444 MS.gene046159:intron 40.0%
AAGACGGATGGGAATATCTT+AGG + chr1.3:79447226-79447245 MS.gene046159:CDS 40.0%
ACAAAGAAGCCTACAACACA+TGG - chr1.3:79446698-79446717 None:intergenic 40.0%
ACTTGGCAATATCAGGAATC+TGG - chr1.3:79447530-79447549 None:intergenic 40.0%
ATGATTATGCTAGCATCCAG+AGG + chr1.3:79447154-79447173 MS.gene046159:CDS 40.0%
CACAATATGAGCTAACAAGC+AGG - chr1.3:79446446-79446465 None:intergenic 40.0%
CAGAATCTGTCACGTATTGA+AGG + chr1.3:79447727-79447746 MS.gene046159:intron 40.0%
CATGAAAAGCCATGTGTTGT+AGG + chr1.3:79446686-79446705 MS.gene046159:intron 40.0%
CGACAATTCATGGAAATTGG+TGG + chr1.3:79447018-79447037 MS.gene046159:CDS 40.0%
CTCAGAAACACACACACATA+TGG - chr1.3:79446202-79446221 None:intergenic 40.0%
CTTCAATACGTGACAGATTC+TGG - chr1.3:79447729-79447748 None:intergenic 40.0%
CTTGGCAATATCAGGAATCT+GGG - chr1.3:79447529-79447548 None:intergenic 40.0%
GACATATCTGCATCTTCCAT+TGG - chr1.3:79446507-79446526 None:intergenic 40.0%
GAGTACTAACCAGTGAGAAT+TGG - chr1.3:79446120-79446139 None:intergenic 40.0%
GGTGGACCAGAATCAAAATT+AGG - chr1.3:79447204-79447223 None:intergenic 40.0%
GTTTCAGCAACATTGAGACT+CGG - chr1.3:79448017-79448036 None:intergenic 40.0%
TAAAGCTGAACTGGATGATG+AGG + chr1.3:79448188-79448207 MS.gene046159:CDS 40.0%
TCCTGTATTGAAAACATCCG+TGG + chr1.3:79447927-79447946 MS.gene046159:CDS 40.0%
TTGATCAAAGGACCAGCAAT+TGG - chr1.3:79447282-79447301 None:intergenic 40.0%
TTGGCAATATCAGGAATCTG+GGG - chr1.3:79447528-79447547 None:intergenic 40.0%
TTTCAGCAACATTGAGACTC+GGG - chr1.3:79448016-79448035 None:intergenic 40.0%
! GAATTGGTTTCTTGTTGGGA+AGG - chr1.3:79446104-79446123 None:intergenic 40.0%
! GTTTTCAATTGGACAGGTGT+GGG + chr1.3:79446476-79446495 MS.gene046159:intron 40.0%
! TCCACGGATGTTTTCAATAC+AGG - chr1.3:79447931-79447950 None:intergenic 40.0%
! TGTTTTCAATTGGACAGGTG+TGG + chr1.3:79446475-79446494 MS.gene046159:intron 40.0%
!! GTGCAATGTTTGGTAATGCA+AGG + chr1.3:79446342-79446361 MS.gene046159:intron 40.0%
AGATATTCCCATCCGTCTTC+TGG - chr1.3:79447225-79447244 None:intergenic 45.0%
AGCAAAAGCAGATTGAAGCG+CGG - chr1.3:79446013-79446032 None:intergenic 45.0%
ATGAATCAGCAAAGGGAACC+TGG + chr1.3:79446555-79446574 MS.gene046159:intron 45.0%
ATTTGATATGCCTCCCACCT+AGG - chr1.3:79447441-79447460 None:intergenic 45.0%
CCCTAGGATTGTTGAAAGCA+GGG - chr1.3:79447980-79447999 None:intergenic 45.0%
CCCTGCTTTCAACAATCCTA+GGG + chr1.3:79447977-79447996 MS.gene046159:CDS 45.0%
CCTAGGATTGTTGAAAGCAG+GGG - chr1.3:79447979-79447998 None:intergenic 45.0%
CTAACAAGCAGGAGACTGTT+GGG - chr1.3:79446435-79446454 None:intergenic 45.0%
GCTTTCAACAATCCTAGGGA+TGG + chr1.3:79447981-79448000 MS.gene046159:CDS 45.0%
GGTTTCTTGTTGGGAAGGAA+CGG - chr1.3:79446099-79446118 None:intergenic 45.0%
GTTGCCATTGAAACAATGGG+AGG + chr1.3:79447563-79447582 MS.gene046159:CDS 45.0%
TCAGGACACTTGGCAATATC+AGG - chr1.3:79447537-79447556 None:intergenic 45.0%
TCCCTAGGATTGTTGAAAGC+AGG - chr1.3:79447981-79448000 None:intergenic 45.0%
TCTCTCAGCAGCACAAATTC+TGG + chr1.3:79445974-79445993 MS.gene046159:CDS 45.0%
TTCAATACAGGATTCTCCGG+AGG - chr1.3:79447919-79447938 None:intergenic 45.0%
TTCAATGGCAACAGATGCTC+AGG - chr1.3:79447555-79447574 None:intergenic 45.0%
TTGTAGATTGCCAGAATGCG+TGG - chr1.3:79447761-79447780 None:intergenic 45.0%
! CTTTCAGGTGCAGTGTATTG+TGG + chr1.3:79446979-79446998 MS.gene046159:intron 45.0%
! GCTGCTACTAGTTTGATCCA+CGG - chr1.3:79447947-79447966 None:intergenic 45.0%
AACTGTCAGCTGCCAATTGC+TGG + chr1.3:79447267-79447286 MS.gene046159:intron 50.0%
CAACAGATGCTCAGGACACT+TGG - chr1.3:79447547-79447566 None:intergenic 50.0%
CCAGTTCAGCTTTACCAGCA+CGG - chr1.3:79448182-79448201 None:intergenic 50.0%
CCCCTGCTTTCAACAATCCT+AGG + chr1.3:79447976-79447995 MS.gene046159:CDS 50.0%
GATTCTGGTCCACCAGAAGA+CGG + chr1.3:79447210-79447229 MS.gene046159:CDS 50.0%
GATTGTTGAAAGCAGGGGAG+TGG - chr1.3:79447974-79447993 None:intergenic 50.0%
GCACAAGTGTCTGCATCTAG+TGG - chr1.3:79448123-79448142 None:intergenic 50.0%
GCTAACAAGCAGGAGACTGT+TGG - chr1.3:79446436-79446455 None:intergenic 50.0%
GGGAATATCTTAGGCGTGTC+AGG + chr1.3:79447235-79447254 MS.gene046159:CDS 50.0%
GTCATACAGTAGCACCCATG+AGG + chr1.3:79446738-79446757 MS.gene046159:intron 50.0%
TATTCCCATCCGTCTTCTGG+TGG - chr1.3:79447222-79447241 None:intergenic 50.0%
TCTTTACTTGCCTAGGTGGG+AGG + chr1.3:79447428-79447447 MS.gene046159:intron 50.0%
TTGTTGGGAAGGAACGGAAG+AGG - chr1.3:79446093-79446112 None:intergenic 50.0%
! ACGGTTGTTGTTGTGAGCAG+CGG - chr1.3:79446064-79446083 None:intergenic 50.0%
AAGTGTGCTAGCATCCGTGC+TGG + chr1.3:79448165-79448184 MS.gene046159:CDS 55.0%
CAGACACTTGTGCTGCACTC+CGG + chr1.3:79448130-79448149 MS.gene046159:CDS 55.0%
GGTTCAAGTGCCACGCATTC+TGG + chr1.3:79447748-79447767 MS.gene046159:CDS 55.0%
TACAGGATTCTCCGGAGGCA+CGG - chr1.3:79447914-79447933 None:intergenic 55.0%
TCTCCGTCTACCTGAAACGC+AGG - chr1.3:79447180-79447199 None:intergenic 55.0%
TGGTCCACCAGAAGACGGAT+GGG + chr1.3:79447215-79447234 MS.gene046159:CDS 55.0%
! ACAGGTGTGGGTGCTACCAA+TGG + chr1.3:79446488-79446507 MS.gene046159:intron 55.0%
! AGGCCTGCGTTTCAGGTAGA+CGG + chr1.3:79447174-79447193 MS.gene046159:CDS 55.0%
! CCGTGCTGGTAAAGCTGAAC+TGG + chr1.3:79448179-79448198 MS.gene046159:CDS 55.0%
! GGAACGGAAGAGGAGTGTGA+CGG - chr1.3:79446083-79446102 None:intergenic 55.0%
! GTTGTTGTTGTGAGCAGCGG+CGG - chr1.3:79446061-79446080 None:intergenic 55.0%
CACACTTCCGCAGCAGACTC+CGG - chr1.3:79448152-79448171 None:intergenic 60.0%
CATCCAGAGGCCTGCGTTTC+AGG + chr1.3:79447167-79447186 MS.gene046159:CDS 60.0%
CTACCTGAAACGCAGGCCTC+TGG - chr1.3:79447173-79447192 None:intergenic 60.0%
CTGGTCCACCAGAAGACGGA+TGG + chr1.3:79447214-79447233 MS.gene046159:CDS 60.0%
GGGCTACAGAGTCCATCCCT+AGG - chr1.3:79447996-79448015 None:intergenic 60.0%
TGAGGATAGCACCGTGCCTC+CGG + chr1.3:79447900-79447919 MS.gene046159:CDS 60.0%
CTGCACTCCGGAGTCTGCTG+CGG + chr1.3:79448142-79448161 MS.gene046159:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 79445949 79448272 79445949 ID=MS.gene046159
chr1.3 mRNA 79445949 79448272 79445949 ID=MS.gene046159.t1;Parent=MS.gene046159
chr1.3 exon 79445949 79446129 79445949 ID=MS.gene046159.t1.exon1;Parent=MS.gene046159.t1
chr1.3 CDS 79445949 79446129 79445949 ID=cds.MS.gene046159.t1;Parent=MS.gene046159.t1
chr1.3 exon 79446986 79447256 79446986 ID=MS.gene046159.t1.exon2;Parent=MS.gene046159.t1
chr1.3 CDS 79446986 79447256 79446986 ID=cds.MS.gene046159.t1;Parent=MS.gene046159.t1
chr1.3 exon 79447443 79447620 79447443 ID=MS.gene046159.t1.exon3;Parent=MS.gene046159.t1
chr1.3 CDS 79447443 79447620 79447443 ID=cds.MS.gene046159.t1;Parent=MS.gene046159.t1
chr1.3 exon 79447730 79448272 79447730 ID=MS.gene046159.t1.exon4;Parent=MS.gene046159.t1
chr1.3 CDS 79447730 79448272 79447730 ID=cds.MS.gene046159.t1;Parent=MS.gene046159.t1
Gene Sequence

>MS.gene046159

ATGGAGTCTATGAGGTTTGTGAATGTCTCTCAGCAGCACAAATTCTGGAAAACAATCTACACCGCGCTTCAATCTGCTTTTGCTGATGAGTATGATACATTGGTCGTTGCCGCCGCTGCTCACAACAACAACCGTCACACTCCTCTTCCGTTCCTTCCCAACAAGAAACCAATTCTCACTGGTTAGTACTCTTTTTTTTTCTTTCTTTCTTTCTTGCACAATCATATTCGATTCTTTTGAATTCTTGATTCCATATGTGTGTGTGTTTCTGAGATTCACTCCATATTGTGTTTGTATTATTAATTTAAGCCTATCTAGAATCGTGAATCTTGATCATTCTTTGCTTCTAATTTCATTGGGAACCTTTCTGCTATTCTGATTTTTTTGGATAAAGTGCAATGTTTGGTAATGCAAGGATAATAAGTAATTCTTTGTAATGAAACCAAATATGTAAAACTTAATTGCTCTGATTTTTTTTGTGTGCCCAACAGTCTCCTGCTTGTTAGCTCATATTGTGTCAATTTGATGTTTTCAATTGGACAGGTGTGGGTGCTACCAATGGAAGATGCAGATATGTCAATGTCTTTGTCCATTGAACTTTCAAGAATGAATCAGCAAAGGGAACCTGGAAAAAGATCTAACTGCAACATTACTTCACTATGTTCCATTTTTTTTCTTTCTTTTTTGTACTTAGGCACTGATTTCAGTTGCATAGCTACTTGTATAAAGTCACTGTACATGAAAAGCCATGTGTTGTAGGCTTCTTTGTAAATTTGAAACACTACTTAGGTCATACAGTAGCACCCATGAGGATTGCTTTGTTGTTTACACTTGTATATTGTTCATTTTTCAATAAAAAAGTTCATTTTTCTGTCTACATTGTGTTTGAATGAGTACACTTTTTGCCTGATTATTATTGAGTTTTCATGTTATTGCTTTATAAAGTTCAATTTGATGTTGTTGCTTGTTTGTGAATTATATTTTTATTCCAGCTTCAACCCATTTTCATAAGCTGAAAGTCTTGTTATTGCTTTCAGGTGCAGTGTATTGTGGAAATATGGATAATGAACGACAATTCATGGAAATTGGTGGAAGTGTGAGCCATGTTGACCCTTCTTATATTCATAGTCTTATGAGTAAGCATGGGTGCTCAGTTTCAGAAGAGTGCATTGAAAATGATGATGATGATGATGATGATAGTGAGGATGATTATGCTAGCATCCAGAGGCCTGCGTTTCAGGTAGACGGAGAACCTAATTTTGATTCTGGTCCACCAGAAGACGGATGGGAATATCTTAGGCGTGTCAGGTATTGTTGTAACTGTCAGCTGCCAATTGCTGGTCCTTTGATCAATTTATGCTTTAAAATTTTATTTTCTTCATGATAACTTTATCTAGGATTCTGGTTTGTTAAATGACGGTGAGTAGATAAAACTTCACTGTTTCCTTCCTAGTAGTAGAAATAACACGTTTCTTAAACTCTTTACTTGCCTAGGTGGGAGGCATATCAAATTCCTAAAGTGAAGGTATCCAAACTTGATAGAAGTAAACTTAACAAGGAGCAAAGTGCTTATATGCCCCAGATTCCTGATATTGCCAAGTGTCCTGAGCATCTGTTGCCATTGAAACAATGGGAGGATATATTTCTTGCAGAATTTTCAGTACTAAGAGAGGTATAGTGTTCTAGAACTCATCTCTGTCTTTTGGGAGTGAAGTGTGCTGATTTTTGTTTAATAGTATATACTAAGGACTGACCCTTGTTTCCCAATTTTGTTATTCCAGAATCTGTCACGTATTGAAGGTTCAAGTGCCACGCATTCTGGCAATCTACAATCTCTTATTTCCTCAAAGTTACCTGGAAATAATTTTGGAGTGATGAACAGAGATGTGCTACTTCATAATAACACGAGCATTGGTAAGGCTGATCAACCTACTAACTTGACTGCTAAAGATGAGGATAGCACCGTGCCTCCGGAGAATCCTGTATTGAAAACATCCGTGGATCAAACTAGTAGCAGCTGTTCCACTCCCCTGCTTTCAACAATCCTAGGGATGGACTCTGTAGCCCGAGTCTCAATGTTGCTGAAACGAATTCGTTTGCTAGAGCCTGAAAACACCATCACAAGAATTGATTGCATGTGGCTTTTTGCTCTCTGTGCAGCAGTAGATGCTCCACTAGATGCAGACACTTGTGCTGCACTCCGGAGTCTGCTGCGGAAGTGTGCTAGCATCCGTGCTGGTAAAGCTGAACTGGATGATGAGGTTGTAATGTTGAATATATTGGCTACAATTTCGGGGAGATATTTTGGACAATCTGAAAATTGA
Protein sequence

>MS.gene046159.t1

MESMRFVNVSQQHKFWKTIYTALQSAFADEYDTLVVAAAAHNNNRHTPLPFLPNKKPILTGAVYCGNMDNERQFMEIGGSVSHVDPSYIHSLMSKHGCSVSEECIENDDDDDDDSEDDYASIQRPAFQVDGEPNFDSGPPEDGWEYLRRVRWEAYQIPKVKVSKLDRSKLNKEQSAYMPQIPDIAKCPEHLLPLKQWEDIFLAEFSVLRENLSRIEGSSATHSGNLQSLISSKLPGNNFGVMNRDVLLHNNTSIGKADQPTNLTAKDEDSTVPPENPVLKTSVDQTSSSCSTPLLSTILGMDSVARVSMLLKRIRLLEPENTITRIDCMWLFALCAAVDAPLDADTCAALRSLLRKCASIRAGKAELDDEVVMLNILATISGRYFGQSEN