Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35660.t1 | XP_003601103.1 | 98.2 | 275 | 5 | 0 | 1 | 275 | 1 | 275 | 6.20E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35660.t1 | Q9LIG6 | 84.6 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 5.6e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35660.t1 | G7J3M0 | 98.2 | 275 | 5 | 0 | 1 | 275 | 1 | 275 | 4.5e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35660 | MS.gene009053 | PPI |
| MS.gene35660 | MS.gene29363 | PPI |
| MS.gene25969 | MS.gene35660 | PPI |
| MS.gene35660 | MS.gene61049 | PPI |
| MS.gene35660 | MS.gene069794 | PPI |
| MS.gene83301 | MS.gene35660 | PPI |
| MS.gene009043 | MS.gene35660 | PPI |
| MS.gene35660 | MS.gene70632 | PPI |
| MS.gene35660 | MS.gene038497 | PPI |
| MS.gene022304 | MS.gene35660 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35660.t1 | MTR_3g073070 | 98.182 | 275 | 5 | 0 | 1 | 275 | 1 | 275 | 0.0 | 559 |
| MS.gene35660.t1 | MTR_3g073070 | 95.402 | 261 | 12 | 0 | 1 | 261 | 1 | 261 | 0.0 | 518 |
| MS.gene35660.t1 | MTR_1g069215 | 92.780 | 277 | 18 | 1 | 1 | 275 | 1 | 277 | 5.77e-158 | 441 |
| MS.gene35660.t1 | MTR_2g005900 | 41.053 | 95 | 50 | 3 | 173 | 264 | 58 | 149 | 4.58e-12 | 64.3 |
| MS.gene35660.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 5.64e-12 | 63.9 |
| MS.gene35660.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 1.00e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35660.t1 | AT3G20970 | 84.615 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 1.16e-132 | 377 |
| MS.gene35660.t1 | AT1G51390 | 81.429 | 210 | 38 | 1 | 57 | 266 | 59 | 267 | 1.51e-126 | 361 |
| MS.gene35660.t1 | AT3G20970 | 84.768 | 151 | 23 | 0 | 66 | 216 | 72 | 222 | 2.02e-93 | 275 |
| MS.gene35660.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 1.33e-12 | 65.5 |
| MS.gene35660.t1 | AT4G25910 | 47.761 | 67 | 33 | 1 | 198 | 264 | 96 | 160 | 2.07e-12 | 65.9 |
| MS.gene35660.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 3.00e-12 | 65.1 |
Find 74 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATCAAGGAACTTT+TGG | 0.209765 | 3.3:+63289410 | MS.gene35660:CDS |
| TGAAATCTTTGCCGCTATTA+TGG | 0.218248 | 3.3:+63288274 | MS.gene35660:CDS |
| CTCCTTTGTCCGGTGGAAAA+TGG | 0.263576 | 3.3:-63287906 | None:intergenic |
| CCACGATGCATCTTCCGATT+TGG | 0.310465 | 3.3:-63288237 | None:intergenic |
| TACAAATTGTTCTCTTTGCC+TGG | 0.323332 | 3.3:+63287812 | MS.gene35660:CDS |
| ATAATAGCGGCAAAGATTTC+AGG | 0.329502 | 3.3:-63288272 | None:intergenic |
| ATCATGAATTGCTGTGTCTT+TGG | 0.335385 | 3.3:-63288348 | None:intergenic |
| ATTATGGATTTCTACTCTTC+CGG | 0.349184 | 3.3:+63288290 | MS.gene35660:CDS |
| TTCATAGCGGAACGCGGGTT+CGG | 0.350771 | 3.3:-63288023 | None:intergenic |
| GTCGTAATCGTCTTCCTAAT+CGG | 0.363079 | 3.3:-63287740 | None:intergenic |
| AACATAAGAGACTCTGGATT+TGG | 0.370612 | 3.3:-63287957 | None:intergenic |
| GATTTGGAGTGGACTGTGTT+TGG | 0.376256 | 3.3:-63287941 | None:intergenic |
| TCATAGCGGAACGCGGGTTC+GGG | 0.376876 | 3.3:-63288022 | None:intergenic |
| GGAACGCGGGTTCGGGAAAT+CGG | 0.395541 | 3.3:-63288015 | None:intergenic |
| GTGATTAGTCTCTGGTTTGA+GGG | 0.396383 | 3.3:-63287778 | None:intergenic |
| CAAAGGTGTGGAACAAGAAT+TGG | 0.398435 | 3.3:+63290370 | MS.gene35660:CDS |
| TGAGGCGGAGGAAGAGAAAA+AGG | 0.403424 | 3.3:-63287871 | None:intergenic |
| TGTGATTAGTCTCTGGTTTG+AGG | 0.424340 | 3.3:-63287779 | None:intergenic |
| TTCAGAGTCACCGAAGAACT+TGG | 0.442159 | 3.3:-63289853 | None:intergenic |
| GTGAATAATGTCGGTGGTGA+GGG | 0.452534 | 3.3:+63287707 | None:intergenic |
| AGATTATTGTGATTAGTCTC+TGG | 0.463457 | 3.3:-63287786 | None:intergenic |
| TAGTGGCTGCCCAAGTTCTT+CGG | 0.469327 | 3.3:+63289843 | MS.gene35660:CDS |
| GTGGTTTCCTCTAGAGATAC+GGG | 0.479661 | 3.3:+63289790 | MS.gene35660:intron |
| TGTGGTTTCCTCTAGAGATA+CGG | 0.482795 | 3.3:+63289789 | MS.gene35660:intron |
| GTCTAGAAAGAGTGGTTCAC+CGG | 0.487455 | 3.3:-63288309 | None:intergenic |
| TCTTCGGTGACTCTGAAGTC+AGG | 0.490374 | 3.3:+63289859 | MS.gene35660:CDS |
| GAAACGACGGTGTTGTGCCC+AGG | 0.492397 | 3.3:-63287830 | None:intergenic |
| GGTGGGGACATTGTATATTG+TGG | 0.499614 | 3.3:+63289465 | MS.gene35660:CDS |
| AGAAGGAAATGGTGAGGCGG+AGG | 0.506688 | 3.3:-63287883 | None:intergenic |
| AGAATTGGATGGCGAGGAAG+AGG | 0.507801 | 3.3:+63290385 | MS.gene35660:CDS |
| TGAAACAGTTGCAATGATCA+AGG | 0.511525 | 3.3:+63289401 | MS.gene35660:CDS |
| GTGGAAAATGGAGAAGGAAA+TGG | 0.515300 | 3.3:-63287894 | None:intergenic |
| AAACATAGTCCTCCTTTGTC+CGG | 0.524701 | 3.3:-63287916 | None:intergenic |
| GAAGAGGAAGCAGCTTTAAG+TGG | 0.530262 | 3.3:+63290401 | MS.gene35660:CDS |
| GTGAAAATTGATTTAGCGAG+AGG | 0.538554 | 3.3:-63288050 | None:intergenic |
| GGATGAAACATAAGAGACTC+TGG | 0.539372 | 3.3:-63287963 | None:intergenic |
| ACATCCATGACAGGTTTACC+AGG | 0.541119 | 3.3:-63287984 | None:intergenic |
| CGACCAACTGTACAAGATGA+TGG | 0.541545 | 3.3:+63289444 | MS.gene35660:CDS |
| AATTGCTGTGTCTTTGGAAG+CGG | 0.555636 | 3.3:-63288342 | None:intergenic |
| ACAAATTGTTCTCTTTGCCT+GGG | 0.558892 | 3.3:+63287813 | MS.gene35660:CDS |
| CGTGAATAATGTCGGTGGTG+AGG | 0.563248 | 3.3:+63287706 | None:intergenic |
| ATCGTCAAACTTAAAATGCA+AGG | 0.563819 | 3.3:+63289814 | MS.gene35660:CDS |
| CAACTGTACAAGATGATGGT+GGG | 0.564735 | 3.3:+63289448 | MS.gene35660:CDS |
| TTGCTGCATTTACAGGTCAA+AGG | 0.565990 | 3.3:+63290353 | MS.gene35660:intron |
| CCACCATCATCTTGTACAGT+TGG | 0.572483 | 3.3:-63289447 | None:intergenic |
| GAGTCTCTTATGTTTCATCC+TGG | 0.574002 | 3.3:+63287966 | MS.gene35660:CDS |
| GGTAAACCTGTCATGGATGT+TGG | 0.587174 | 3.3:+63287987 | MS.gene35660:CDS |
| TCATCCTGGTAAACCTGTCA+TGG | 0.592000 | 3.3:+63287980 | MS.gene35660:CDS |
| CAAATCGGAAGATGCATCGT+GGG | 0.592355 | 3.3:+63288238 | MS.gene35660:CDS |
| GCTTGAGAGTCTAGAAAGAG+TGG | 0.594156 | 3.3:-63288317 | None:intergenic |
| AACTGTACAAGATGATGGTG+GGG | 0.603309 | 3.3:+63289449 | MS.gene35660:CDS |
| GAGAATTCATAGCGGAACGC+GGG | 0.604743 | 3.3:-63288028 | None:intergenic |
| GCGCTACCAACATCCATGAC+AGG | 0.609183 | 3.3:-63287993 | None:intergenic |
| TCAGAGTCACCGAAGAACTT+GGG | 0.610880 | 3.3:-63289852 | None:intergenic |
| TGAATAATGTCGGTGGTGAG+GGG | 0.610912 | 3.3:+63287708 | None:intergenic |
| TGTCCGGTGGAAAATGGAGA+AGG | 0.612110 | 3.3:-63287900 | None:intergenic |
| CATAGTCCTCCTTTGTCCGG+TGG | 0.613263 | 3.3:-63287913 | None:intergenic |
| GGAGAATTCATAGCGGAACG+CGG | 0.616372 | 3.3:-63288029 | None:intergenic |
| AAAATGCAAGGAGCGTGTAG+TGG | 0.619177 | 3.3:+63289826 | MS.gene35660:CDS |
| CCAACTGTACAAGATGATGG+TGG | 0.622834 | 3.3:+63289447 | MS.gene35660:CDS |
| GCATTTACAGGTCAAAGGTG+TGG | 0.632082 | 3.3:+63290358 | MS.gene35660:intron |
| TGGAGAAGGAAATGGTGAGG+CGG | 0.634856 | 3.3:-63287886 | None:intergenic |
| AAGAGACTCTGGATTTGGAG+TGG | 0.639473 | 3.3:-63287952 | None:intergenic |
| GGAACAAGAATTGGATGGCG+AGG | 0.646815 | 3.3:+63290379 | MS.gene35660:CDS |
| CCAAATCGGAAGATGCATCG+TGG | 0.660421 | 3.3:+63288237 | MS.gene35660:CDS |
| TTAGGAAGACGATTACGACT+AGG | 0.667897 | 3.3:+63287744 | MS.gene35660:CDS |
| AGAGTAGAAATCCATAATAG+CGG | 0.670498 | 3.3:-63288285 | None:intergenic |
| AAATGGAGAAGGAAATGGTG+AGG | 0.682646 | 3.3:-63287889 | None:intergenic |
| CAGATCGTGAATAATGTCGG+TGG | 0.693370 | 3.3:+63287701 | None:intergenic |
| GGTGTGGAACAAGAATTGGA+TGG | 0.704531 | 3.3:+63290374 | MS.gene35660:CDS |
| GCTGATGCATTATGTACCTG+AGG | 0.715793 | 3.3:+63289894 | MS.gene35660:CDS |
| TGGTTTCCTCTAGAGATACG+GGG | 0.727422 | 3.3:+63289791 | MS.gene35660:intron |
| TGGTTGCGAGGTTGAAACGA+CGG | 0.733707 | 3.3:-63287843 | None:intergenic |
| AGCGAGAGGAGAATTCATAG+CGG | 0.791927 | 3.3:-63288036 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATGTTTTTTTTATTTGT+AGG | - | chr3.3:63289027-63289046 | None:intergenic | 10.0% |
| !!! | TTATGTTTTTTTTATTTGTA+GGG | - | chr3.3:63289026-63289045 | None:intergenic | 10.0% |
| !!! | TTTTATGAAATTTAAGTAAA+AGG | - | chr3.3:63288436-63288455 | None:intergenic | 10.0% |
| !! | ATACAAATTAAAGAAATGAA+AGG | - | chr3.3:63288143-63288162 | None:intergenic | 15.0% |
| !! | ATTTGATAAATATCATTAGT+TGG | - | chr3.3:63288674-63288693 | None:intergenic | 15.0% |
| !! | CTTGTAATTTAATTATTGTT+TGG | - | chr3.3:63288721-63288740 | None:intergenic | 15.0% |
| !! | GTTTCTCAATATAATATAAT+TGG | - | chr3.3:63290317-63290336 | None:intergenic | 15.0% |
| !! | TTGATTACTGTAAATATAAA+TGG | - | chr3.3:63289970-63289989 | None:intergenic | 15.0% |
| !!! | AATTGTTTTTTTATTTGTAG+GGG | - | chr3.3:63288970-63288989 | None:intergenic | 15.0% |
| !!! | AGAATTGTTTTTTTATTTGT+AGG | - | chr3.3:63288972-63288991 | None:intergenic | 15.0% |
| !!! | ATTTGTAATATTCTGTTTTT+AGG | - | chr3.3:63288862-63288881 | None:intergenic | 15.0% |
| !!! | GAATTGTTTTTTTATTTGTA+GGG | - | chr3.3:63288971-63288990 | None:intergenic | 15.0% |
| !!! | GTTTCTCTTTAATATTTTTT+AGG | + | chr3.3:63289271-63289290 | MS.gene35660:intron | 15.0% |
| !!! | TATGTTTTTTTTATTTGTAG+GGG | - | chr3.3:63289025-63289044 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTTAATTGTTGC+AGG | + | chr3.3:63288173-63288192 | MS.gene35660:intron | 15.0% |
| !!! | TTATTTAAAGCATCATTAAT+AGG | + | chr3.3:63290266-63290285 | MS.gene35660:intron | 15.0% |
| !!! | TTCTTTTTAACAAAAAAATC+AGG | + | chr3.3:63289171-63289190 | MS.gene35660:intron | 15.0% |
| !! | AAATATTAAAGAGAAACCTA+TGG | - | chr3.3:63289268-63289287 | None:intergenic | 20.0% |
| !! | ACTGTAAATATAAATGGAAA+CGG | - | chr3.3:63289964-63289983 | None:intergenic | 20.0% |
| !! | ATTGGACAATTCATATAAAA+TGG | - | chr3.3:63290299-63290318 | None:intergenic | 20.0% |
| !! | TAATGTTGTACATTATAGAA+TGG | + | chr3.3:63289744-63289763 | MS.gene35660:intron | 20.0% |
| !! | TAGAATGTTAGTAAATTAGT+GGG | - | chr3.3:63288832-63288851 | None:intergenic | 20.0% |
| !! | TGCAAATCTTATAAGTTAAT+TGG | - | chr3.3:63290109-63290128 | None:intergenic | 20.0% |
| !! | TTAGAATGTTAGTAAATTAG+TGG | - | chr3.3:63288833-63288852 | None:intergenic | 20.0% |
| !! | TTTACAGTAATCAAATTGAT+TGG | + | chr3.3:63289976-63289995 | MS.gene35660:intron | 20.0% |
| !!! | TGTATTTGCTTTTTATATTG+TGG | + | chr3.3:63289771-63289790 | MS.gene35660:intron | 20.0% |
| !!! | TTTTAACAAAAAAATCAGGA+GGG | + | chr3.3:63289175-63289194 | MS.gene35660:intron | 20.0% |
| !!! | TTTTTAACAAAAAAATCAGG+AGG | + | chr3.3:63289174-63289193 | MS.gene35660:intron | 20.0% |
| ! | AAACCCAAATAGAAAAAAAG+AGG | - | chr3.3:63289519-63289538 | None:intergenic | 25.0% |
| ! | AAATAGAATAAGAGATTGAG+AGG | + | chr3.3:63289048-63289067 | MS.gene35660:intron | 25.0% |
| ! | AACCCAAATAGAAAAAAAGA+GGG | - | chr3.3:63289518-63289537 | None:intergenic | 25.0% |
| ! | AGAGTATAGATTATTCATTG+AGG | - | chr3.3:63289553-63289572 | None:intergenic | 25.0% |
| ! | GAGTTTATGATAGAACATTA+TGG | + | chr3.3:63288488-63288507 | MS.gene35660:intron | 25.0% |
| ! | TAATCAAATTGATTGGAAAC+TGG | + | chr3.3:63289983-63290002 | MS.gene35660:intron | 25.0% |
| ! | TTCAAGATGTCAAAACTAAA+TGG | + | chr3.3:63289347-63289366 | MS.gene35660:intron | 25.0% |
| ! | TTTAACAAAAAAATCAGGAG+GGG | + | chr3.3:63289176-63289195 | MS.gene35660:intron | 25.0% |
| !! | AAATCAATTTTCACGATTGA+CGG | + | chr3.3:63288059-63288078 | MS.gene35660:CDS | 25.0% |
| !! | AAGTTTGCATTATCATTTTG+TGG | + | chr3.3:63289921-63289940 | MS.gene35660:intron | 25.0% |
| !! | TTTAGTTTAGTCTCATTTCA+AGG | + | chr3.3:63288403-63288422 | MS.gene35660:intron | 25.0% |
| !!! | ATTTAGTTTTGACATCTTGA+AGG | - | chr3.3:63289348-63289367 | None:intergenic | 25.0% |
| AATCAATCGTGTAAGACAAA+TGG | - | chr3.3:63290145-63290164 | None:intergenic | 30.0% | |
| AGAGTAGAAATCCATAATAG+CGG | - | chr3.3:63288288-63288307 | None:intergenic | 30.0% | |
| ATATAAATGGAAACGGCAAA+TGG | - | chr3.3:63289957-63289976 | None:intergenic | 30.0% | |
| ATCGTCAAACTTAAAATGCA+AGG | + | chr3.3:63289814-63289833 | MS.gene35660:CDS | 30.0% | |
| ATGGAAAAGGATTTAGACTT+GGG | - | chr3.3:63289249-63289268 | None:intergenic | 30.0% | |
| ATTATGGATTTCTACTCTTC+CGG | + | chr3.3:63288290-63288309 | MS.gene35660:CDS | 30.0% | |
| ATTTGTAGGGGCAATTAATA+AGG | - | chr3.3:63288958-63288977 | None:intergenic | 30.0% | |
| CAAATAGAAAAAAAGAGGGA+GGG | - | chr3.3:63289514-63289533 | None:intergenic | 30.0% | |
| GCAATATCAACATAGAAATG+AGG | - | chr3.3:63288383-63288402 | None:intergenic | 30.0% | |
| TAAAGAGAAACCTATGGAAA+AGG | - | chr3.3:63289262-63289281 | None:intergenic | 30.0% | |
| TAGTCTCATTTCAAGGAATT+TGG | + | chr3.3:63288410-63288429 | MS.gene35660:intron | 30.0% | |
| TATGGAAAAGGATTTAGACT+TGG | - | chr3.3:63289250-63289269 | None:intergenic | 30.0% | |
| ! | AAGTCTAAATCCTTTTCCAT+AGG | + | chr3.3:63289249-63289268 | MS.gene35660:intron | 30.0% |
| ! | GATTTCGAGGGTATATTAAA+AGG | + | chr3.3:63290070-63290089 | MS.gene35660:intron | 30.0% |
| ! | TTTTGTCACTGTTACCAAAT+CGG | + | chr3.3:63288223-63288242 | MS.gene35660:CDS | 30.0% |
| !! | AGATTATTGTGATTAGTCTC+TGG | - | chr3.3:63287789-63287808 | None:intergenic | 30.0% |
| !! | CATTCTTAAGTTGATTTCGA+GGG | + | chr3.3:63290058-63290077 | MS.gene35660:intron | 30.0% |
| !!! | CTCCCTCTTTTTTTCTATTT+GGG | + | chr3.3:63289513-63289532 | MS.gene35660:intron | 30.0% |
| !!! | GTATGAGATTTTTCTAGCTT+AGG | + | chr3.3:63289319-63289338 | MS.gene35660:intron | 30.0% |
| AAACCTTATTCCACTAAGTG+GGG | - | chr3.3:63288537-63288556 | None:intergenic | 35.0% | |
| AACATAAGAGACTCTGGATT+TGG | - | chr3.3:63287960-63287979 | None:intergenic | 35.0% | |
| AATCAACTTAAGAATGCCAC+AGG | - | chr3.3:63290054-63290073 | None:intergenic | 35.0% | |
| ACAAATTGTTCTCTTTGCCT+GGG | + | chr3.3:63287813-63287832 | MS.gene35660:CDS | 35.0% | |
| ACAGAATAGAAAGACCAAGT+TGG | + | chr3.3:63289575-63289594 | MS.gene35660:intron | 35.0% | |
| AGATAAAGTTCAACCCAACT+TGG | - | chr3.3:63289592-63289611 | None:intergenic | 35.0% | |
| ATAATAGCGGCAAAGATTTC+AGG | - | chr3.3:63288275-63288294 | None:intergenic | 35.0% | |
| ATCATGAATTGCTGTGTCTT+TGG | - | chr3.3:63288351-63288370 | None:intergenic | 35.0% | |
| CAAACCTTATTCCACTAAGT+GGG | - | chr3.3:63288538-63288557 | None:intergenic | 35.0% | |
| CAGAATAGAAAGACCAAGTT+GGG | + | chr3.3:63289576-63289595 | MS.gene35660:intron | 35.0% | |
| CCAAATAGAAAAAAAGAGGG+AGG | - | chr3.3:63289515-63289534 | None:intergenic | 35.0% | |
| TACAAATTGTTCTCTTTGCC+TGG | + | chr3.3:63287812-63287831 | MS.gene35660:CDS | 35.0% | |
| TACACGTAGTTCATTACAGA+AGG | - | chr3.3:63290026-63290045 | None:intergenic | 35.0% | |
| TAGTATGCACAATGACAGAT+AGG | - | chr3.3:63290201-63290220 | None:intergenic | 35.0% | |
| TCAAACCTTATTCCACTAAG+TGG | - | chr3.3:63288539-63288558 | None:intergenic | 35.0% | |
| TGAAACAGTTGCAATGATCA+AGG | + | chr3.3:63289401-63289420 | MS.gene35660:CDS | 35.0% | |
| TGAAATCTTTGCCGCTATTA+TGG | + | chr3.3:63288274-63288293 | MS.gene35660:CDS | 35.0% | |
| ! | GGAATTACTCGTGTTTTCTT+TGG | + | chr3.3:63288194-63288213 | MS.gene35660:intron | 35.0% |
| ! | GTGAAAATTGATTTAGCGAG+AGG | - | chr3.3:63288053-63288072 | None:intergenic | 35.0% |
| ! | TGCAATGATCAAGGAACTTT+TGG | + | chr3.3:63289410-63289429 | MS.gene35660:CDS | 35.0% |
| ! | TTTTAGTGACCCAAGTTCTT+GGG | + | chr3.3:63289295-63289314 | MS.gene35660:intron | 35.0% |
| !! | ACATTGAAGGAGTACTAACT+AGG | + | chr3.3:63288769-63288788 | MS.gene35660:intron | 35.0% |
| !! | GCATTCTTAAGTTGATTTCG+AGG | + | chr3.3:63290057-63290076 | MS.gene35660:intron | 35.0% |
| !! | TAATGCAAACTTGTTACCTC+AGG | - | chr3.3:63289913-63289932 | None:intergenic | 35.0% |
| !!! | CCTCCCTCTTTTTTTCTATT+TGG | + | chr3.3:63289512-63289531 | MS.gene35660:intron | 35.0% |
| !!! | TAGTTTTGACATCTTGAAGG+TGG | - | chr3.3:63289345-63289364 | None:intergenic | 35.0% |
| AAAAGTCCTGACCTCAATTC+AGG | + | chr3.3:63288589-63288608 | MS.gene35660:intron | 40.0% | |
| AAACATAGTCCTCCTTTGTC+CGG | - | chr3.3:63287919-63287938 | None:intergenic | 40.0% | |
| AAATACAAAGCCTGACTGGT+GGG | + | chr3.3:63289092-63289111 | MS.gene35660:intron | 40.0% | |
| AAATGGAGAAGGAAATGGTG+AGG | - | chr3.3:63287892-63287911 | None:intergenic | 40.0% | |
| AAGGAAATACAAAGCCTGAC+TGG | + | chr3.3:63289088-63289107 | MS.gene35660:intron | 40.0% | |
| ACAAGTCTATCGTCACAAGT+AGG | + | chr3.3:63288736-63288755 | MS.gene35660:intron | 40.0% | |
| ACTTAAGAATGCCACAGGAA+AGG | - | chr3.3:63290049-63290068 | None:intergenic | 40.0% | |
| ATAGAAAAAAAGAGGGAGGG+AGG | - | chr3.3:63289511-63289530 | None:intergenic | 40.0% | |
| ATCTCATACTCCCAAGAACT+TGG | - | chr3.3:63289308-63289327 | None:intergenic | 40.0% | |
| ATGCTTACCTGTTTGCATAC+AGG | + | chr3.3:63289371-63289390 | MS.gene35660:intron | 40.0% | |
| CGTAGTTCATTACAGAAGGA+CGG | - | chr3.3:63290022-63290041 | None:intergenic | 40.0% | |
| GAATCATCCTGTATGCAAAC+AGG | - | chr3.3:63289381-63289400 | None:intergenic | 40.0% | |
| GAGTCTCTTATGTTTCATCC+TGG | + | chr3.3:63287966-63287985 | MS.gene35660:CDS | 40.0% | |
| GCAAGTTTCCAAGACAATGT+TGG | + | chr3.3:63289709-63289728 | MS.gene35660:intron | 40.0% | |
| GGATGAAACATAAGAGACTC+TGG | - | chr3.3:63287966-63287985 | None:intergenic | 40.0% | |
| GGCTGTAGATTTGAAAGGAA+AGG | + | chr3.3:63289069-63289088 | MS.gene35660:intron | 40.0% | |
| GGGATGGATGATTGATGAAT+GGG | + | chr3.3:63289112-63289131 | MS.gene35660:intron | 40.0% | |
| GTCGTAATCGTCTTCCTAAT+CGG | - | chr3.3:63287743-63287762 | None:intergenic | 40.0% | |
| GTGGAAAATGGAGAAGGAAA+TGG | - | chr3.3:63287897-63287916 | None:intergenic | 40.0% | |
| TCTCATACTCCCAAGAACTT+GGG | - | chr3.3:63289307-63289326 | None:intergenic | 40.0% | |
| TGAGAGGCTGTAGATTTGAA+AGG | + | chr3.3:63289064-63289083 | MS.gene35660:intron | 40.0% | |
| TGCCTCGATTCAAAAACCAT+TGG | + | chr3.3:63289208-63289227 | MS.gene35660:intron | 40.0% | |
| TGGGATGGATGATTGATGAA+TGG | + | chr3.3:63289111-63289130 | MS.gene35660:intron | 40.0% | |
| TGTCAACACCAACATTGTCT+TGG | - | chr3.3:63289720-63289739 | None:intergenic | 40.0% | |
| TTAGACTTGGGAGATACAAG+AGG | - | chr3.3:63289237-63289256 | None:intergenic | 40.0% | |
| TTAGGAAGACGATTACGACT+AGG | + | chr3.3:63287744-63287763 | MS.gene35660:CDS | 40.0% | |
| TTGCTGCATTTACAGGTCAA+AGG | + | chr3.3:63290353-63290372 | MS.gene35660:intron | 40.0% | |
| ! | AACTGTACAAGATGATGGTG+GGG | + | chr3.3:63289449-63289468 | MS.gene35660:CDS | 40.0% |
| ! | AATGGTTTTTGAATCGAGGC+AGG | - | chr3.3:63289209-63289228 | None:intergenic | 40.0% |
| ! | AATTGCTGTGTCTTTGGAAG+CGG | - | chr3.3:63288345-63288364 | None:intergenic | 40.0% |
| ! | ATGGTTTTTGAATCGAGGCA+GGG | - | chr3.3:63289208-63289227 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGGAACAAGAAT+TGG | + | chr3.3:63290370-63290389 | MS.gene35660:CDS | 40.0% |
| ! | CAACTGTACAAGATGATGGT+GGG | + | chr3.3:63289448-63289467 | MS.gene35660:CDS | 40.0% |
| ! | CTTTTAGTGACCCAAGTTCT+TGG | + | chr3.3:63289294-63289313 | MS.gene35660:intron | 40.0% |
| ! | TGCCAATGGTTTTTGAATCG+AGG | - | chr3.3:63289213-63289232 | None:intergenic | 40.0% |
| ! | TGTGGTTTCCTCTAGAGATA+CGG | + | chr3.3:63289789-63289808 | MS.gene35660:intron | 40.0% |
| ! | TTTCCTTCTCCATTTTCCAC+CGG | + | chr3.3:63287897-63287916 | MS.gene35660:CDS | 40.0% |
| !! | AGGAAGAGAAAAAGGCATTG+TGG | - | chr3.3:63287866-63287885 | None:intergenic | 40.0% |
| !! | GTGATTAGTCTCTGGTTTGA+GGG | - | chr3.3:63287781-63287800 | None:intergenic | 40.0% |
| !! | TGTGATTAGTCTCTGGTTTG+AGG | - | chr3.3:63287782-63287801 | None:intergenic | 40.0% |
| AACTACGTGTACCTTTCCTG+TGG | + | chr3.3:63290035-63290054 | MS.gene35660:intron | 45.0% | |
| AAGAGACTCTGGATTTGGAG+TGG | - | chr3.3:63287955-63287974 | None:intergenic | 45.0% | |
| ACATCCATGACAGGTTTACC+AGG | - | chr3.3:63287987-63288006 | None:intergenic | 45.0% | |
| AGCGAGAGGAGAATTCATAG+CGG | - | chr3.3:63288039-63288058 | None:intergenic | 45.0% | |
| CAAATCGGAAGATGCATCGT+GGG | + | chr3.3:63288238-63288257 | MS.gene35660:CDS | 45.0% | |
| CCACCATCATCTTGTACAGT+TGG | - | chr3.3:63289450-63289469 | None:intergenic | 45.0% | |
| CGACCAACTGTACAAGATGA+TGG | + | chr3.3:63289444-63289463 | MS.gene35660:CDS | 45.0% | |
| CTTATTCCACTAAGTGGGGT+CGG | - | chr3.3:63288533-63288552 | None:intergenic | 45.0% | |
| GAAATACAAAGCCTGACTGG+TGG | + | chr3.3:63289091-63289110 | MS.gene35660:intron | 45.0% | |
| GAGATACAAGAGGATGCCAA+TGG | - | chr3.3:63289227-63289246 | None:intergenic | 45.0% | |
| GCATTTACAGGTCAAAGGTG+TGG | + | chr3.3:63290358-63290377 | MS.gene35660:intron | 45.0% | |
| GCTGATGCATTATGTACCTG+AGG | + | chr3.3:63289894-63289913 | MS.gene35660:CDS | 45.0% | |
| GCTTGAGAGTCTAGAAAGAG+TGG | - | chr3.3:63288320-63288339 | None:intergenic | 45.0% | |
| GGTAAACCTGTCATGGATGT+TGG | + | chr3.3:63287987-63288006 | MS.gene35660:CDS | 45.0% | |
| GGTGGGGACATTGTATATTG+TGG | + | chr3.3:63289465-63289484 | MS.gene35660:CDS | 45.0% | |
| GGTGTGGAACAAGAATTGGA+TGG | + | chr3.3:63290374-63290393 | MS.gene35660:CDS | 45.0% | |
| GTAAATGCAGCAAGCAGCAT+TGG | - | chr3.3:63290346-63290365 | None:intergenic | 45.0% | |
| GTCTAGAAAGAGTGGTTCAC+CGG | - | chr3.3:63288312-63288331 | None:intergenic | 45.0% | |
| TACAGAAGGACGGTAAGTTG+AGG | - | chr3.3:63290012-63290031 | None:intergenic | 45.0% | |
| TCAGAGTCACCGAAGAACTT+GGG | - | chr3.3:63289855-63289874 | None:intergenic | 45.0% | |
| TCATCCTGGTAAACCTGTCA+TGG | + | chr3.3:63287980-63287999 | MS.gene35660:CDS | 45.0% | |
| TGCACAATGACAGATAGGTC+TGG | - | chr3.3:63290196-63290215 | None:intergenic | 45.0% | |
| TTCAGAGTCACCGAAGAACT+TGG | - | chr3.3:63289856-63289875 | None:intergenic | 45.0% | |
| ! | AAAATGCAAGGAGCGTGTAG+TGG | + | chr3.3:63289826-63289845 | MS.gene35660:CDS | 45.0% |
| ! | AGGGGTAGTGTTTTCCGATT+AGG | + | chr3.3:63287726-63287745 | MS.gene35660:CDS | 45.0% |
| ! | ATGCTGCTTGCTGCATTTAC+AGG | + | chr3.3:63290346-63290365 | MS.gene35660:intron | 45.0% |
| ! | CCAACTGTACAAGATGATGG+TGG | + | chr3.3:63289447-63289466 | MS.gene35660:CDS | 45.0% |
| ! | GTGGTTTCCTCTAGAGATAC+GGG | + | chr3.3:63289790-63289809 | MS.gene35660:intron | 45.0% |
| ! | TGGTTTCCTCTAGAGATACG+GGG | + | chr3.3:63289791-63289810 | MS.gene35660:intron | 45.0% |
| ! | TGGTTTTTGAATCGAGGCAG+GGG | - | chr3.3:63289207-63289226 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTGTGGTTGCG+AGG | - | chr3.3:63287858-63287877 | None:intergenic | 45.0% |
| !! | GAAGAGGAAGCAGCTTTAAG+TGG | + | chr3.3:63290401-63290420 | MS.gene35660:CDS | 45.0% |
| !! | GATTTGGAGTGGACTGTGTT+TGG | - | chr3.3:63287944-63287963 | None:intergenic | 45.0% |
| AATCATCCATCCCACCAGTC+AGG | - | chr3.3:63289105-63289124 | None:intergenic | 50.0% | |
| AGAATTGGATGGCGAGGAAG+AGG | + | chr3.3:63290385-63290404 | MS.gene35660:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3.3:63288089-63288108 | None:intergenic | 50.0% | |
| CCAAATCGGAAGATGCATCG+TGG | + | chr3.3:63288237-63288256 | MS.gene35660:CDS | 50.0% | |
| CCACGATGCATCTTCCGATT+TGG | - | chr3.3:63288240-63288259 | None:intergenic | 50.0% | |
| CGACCCCACTTAGTGGAATA+AGG | + | chr3.3:63288531-63288550 | MS.gene35660:intron | 50.0% | |
| CTCCTTTGTCCGGTGGAAAA+TGG | - | chr3.3:63287909-63287928 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3.3:63288090-63288109 | None:intergenic | 50.0% | |
| GGAACAAGAATTGGATGGCG+AGG | + | chr3.3:63290379-63290398 | MS.gene35660:CDS | 50.0% | |
| TAGTGGCTGCCCAAGTTCTT+CGG | + | chr3.3:63289843-63289862 | MS.gene35660:CDS | 50.0% | |
| TCCTGACCTCAATTCAGGTG+CGG | + | chr3.3:63288594-63288613 | MS.gene35660:intron | 50.0% | |
| TGAGGCGGAGGAAGAGAAAA+AGG | - | chr3.3:63287874-63287893 | None:intergenic | 50.0% | |
| TGGAGAAGGAAATGGTGAGG+CGG | - | chr3.3:63287889-63287908 | None:intergenic | 50.0% | |
| TGGTTGCGAGGTTGAAACGA+CGG | - | chr3.3:63287846-63287865 | None:intergenic | 50.0% | |
| TGTCCGGTGGAAAATGGAGA+AGG | - | chr3.3:63287903-63287922 | None:intergenic | 50.0% | |
| ! | CATTTTCCACCGGACAAAGG+AGG | + | chr3.3:63287907-63287926 | MS.gene35660:CDS | 50.0% |
| ! | CTCCATTTTCCACCGGACAA+AGG | + | chr3.3:63287904-63287923 | MS.gene35660:CDS | 50.0% |
| ! | GAGAATTCATAGCGGAACGC+GGG | - | chr3.3:63288031-63288050 | None:intergenic | 50.0% |
| ! | GGAGAATTCATAGCGGAACG+CGG | - | chr3.3:63288032-63288051 | None:intergenic | 50.0% |
| !! | TCTTCGGTGACTCTGAAGTC+AGG | + | chr3.3:63289859-63289878 | MS.gene35660:CDS | 50.0% |
| ACAAAGCCTGACTGGTGGGA+TGG | + | chr3.3:63289096-63289115 | MS.gene35660:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3.3:63288525-63288544 | None:intergenic | 55.0% | |
| AGAAGGAAATGGTGAGGCGG+AGG | - | chr3.3:63287886-63287905 | None:intergenic | 55.0% | |
| AGGCAGCTGAGGGACATTGA+AGG | + | chr3.3:63288756-63288775 | MS.gene35660:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.3:63288524-63288543 | MS.gene35660:intron | 55.0% | |
| CATAGTCCTCCTTTGTCCGG+TGG | - | chr3.3:63287916-63287935 | None:intergenic | 55.0% | |
| CGTCACAAGTAGGCAGCTGA+GGG | + | chr3.3:63288746-63288765 | MS.gene35660:intron | 55.0% | |
| GACGATCCCCGTATCTCTAG+AGG | - | chr3.3:63289800-63289819 | None:intergenic | 55.0% | |
| GCGCTACCAACATCCATGAC+AGG | - | chr3.3:63287996-63288015 | None:intergenic | 55.0% | |
| GGGAGGGAGGAGAGAACTTA+CGG | - | chr3.3:63289498-63289517 | None:intergenic | 55.0% | |
| TCCGCACCTGAATTGAGGTC+AGG | - | chr3.3:63288598-63288617 | None:intergenic | 55.0% | |
| TCGTCACAAGTAGGCAGCTG+AGG | + | chr3.3:63288745-63288764 | MS.gene35660:intron | 55.0% | |
| ! | TTCATAGCGGAACGCGGGTT+CGG | - | chr3.3:63288026-63288045 | None:intergenic | 55.0% |
| AGCCAGGATTGGGGAACTGG+GGG | + | chr3.3:63288617-63288636 | MS.gene35660:intron | 60.0% | |
| ATCCCCCAGTTCCCCAATCC+TGG | - | chr3.3:63288622-63288641 | None:intergenic | 60.0% | |
| CTCAATTCAGGTGCGGAGCC+AGG | + | chr3.3:63288601-63288620 | MS.gene35660:intron | 60.0% | |
| CTGGCTCCGCACCTGAATTG+AGG | - | chr3.3:63288603-63288622 | None:intergenic | 60.0% | |
| GAGCCAGGATTGGGGAACTG+GGG | + | chr3.3:63288616-63288635 | MS.gene35660:intron | 60.0% | |
| GGAACGCGGGTTCGGGAAAT+CGG | - | chr3.3:63288018-63288037 | None:intergenic | 60.0% | |
| GGAGCCAGGATTGGGGAACT+GGG | + | chr3.3:63288615-63288634 | MS.gene35660:intron | 60.0% | |
| TCAGGTGCGGAGCCAGGATT+GGG | + | chr3.3:63288607-63288626 | MS.gene35660:intron | 60.0% | |
| TTCAGGTGCGGAGCCAGGAT+TGG | + | chr3.3:63288606-63288625 | MS.gene35660:intron | 60.0% | |
| ! | TCATAGCGGAACGCGGGTTC+GGG | - | chr3.3:63288025-63288044 | None:intergenic | 60.0% |
| !! | GAAACGACGGTGTTGTGCCC+AGG | - | chr3.3:63287833-63287852 | None:intergenic | 60.0% |
| CAGGTGCGGAGCCAGGATTG+GGG | + | chr3.3:63288608-63288627 | MS.gene35660:intron | 65.0% | |
| CGGAGCCAGGATTGGGGAAC+TGG | + | chr3.3:63288614-63288633 | MS.gene35660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 63287714 | 63290436 | 63287714 | ID=MS.gene35660 |
| chr3.3 | mRNA | 63287714 | 63290436 | 63287714 | ID=MS.gene35660.t1;Parent=MS.gene35660 |
| chr3.3 | exon | 63287714 | 63288080 | 63287714 | ID=MS.gene35660.t1.exon1;Parent=MS.gene35660.t1 |
| chr3.3 | CDS | 63287714 | 63288080 | 63287714 | ID=cds.MS.gene35660.t1;Parent=MS.gene35660.t1 |
| chr3.3 | exon | 63288195 | 63288370 | 63288195 | ID=MS.gene35660.t1.exon2;Parent=MS.gene35660.t1 |
| chr3.3 | CDS | 63288195 | 63288370 | 63288195 | ID=cds.MS.gene35660.t1;Parent=MS.gene35660.t1 |
| chr3.3 | exon | 63289393 | 63289496 | 63289393 | ID=MS.gene35660.t1.exon3;Parent=MS.gene35660.t1 |
| chr3.3 | CDS | 63289393 | 63289496 | 63289393 | ID=cds.MS.gene35660.t1;Parent=MS.gene35660.t1 |
| chr3.3 | exon | 63289804 | 63289915 | 63289804 | ID=MS.gene35660.t1.exon4;Parent=MS.gene35660.t1 |
| chr3.3 | CDS | 63289804 | 63289915 | 63289804 | ID=cds.MS.gene35660.t1;Parent=MS.gene35660.t1 |
| chr3.3 | exon | 63290368 | 63290436 | 63290368 | ID=MS.gene35660.t1.exon5;Parent=MS.gene35660.t1 |
| chr3.3 | CDS | 63290368 | 63290436 | 63290368 | ID=cds.MS.gene35660.t1;Parent=MS.gene35660.t1 |
| Gene Sequence |
| Protein sequence |
