AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35781

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35781.t1 MTR_2g088990 94.737 228 12 0 1 228 1 228 2.07e-149 415
MS.gene35781.t1 MTR_6g080660 42.017 119 68 1 4 122 7 124 3.09e-34 122
MS.gene35781.t1 MTR_8g007035 45.299 117 59 3 11 123 8 123 1.23e-30 112
MS.gene35781.t1 MTR_8g007020 46.154 117 58 3 11 123 8 123 6.08e-30 110
MS.gene35781.t1 MTR_1g090190 46.392 97 51 1 22 118 20 115 2.37e-29 108
MS.gene35781.t1 MTR_6g023760 47.059 102 52 2 18 118 19 119 1.33e-27 103
MS.gene35781.t1 MTR_3g099570 42.857 133 68 5 12 141 12 139 3.36e-27 103
MS.gene35781.t1 MTR_3g099580 45.918 98 52 1 21 118 22 118 3.17e-25 98.2
MS.gene35781.t1 MTR_8g089110 40.000 115 64 4 6 119 9 119 2.36e-24 94.0
MS.gene35781.t1 MTR_3g099980 42.975 121 65 4 1 118 1 120 4.20e-24 95.9
MS.gene35781.t1 MTR_1g104800 37.692 130 73 4 1 125 1 127 5.83e-24 94.7
MS.gene35781.t1 MTR_3g099680 42.975 121 65 4 1 118 1 120 1.07e-23 95.1
MS.gene35781.t1 MTR_1g014120 33.775 151 82 4 8 153 9 146 2.03e-23 93.2
MS.gene35781.t1 MTR_5g006040 34.483 174 93 8 1 168 1 159 3.24e-23 92.8
MS.gene35781.t1 MTR_2g025580 34.459 148 83 6 1 141 4 144 3.31e-23 92.4
MS.gene35781.t1 MTR_3g099540 41.176 119 68 2 12 129 13 130 7.22e-23 90.5
MS.gene35781.t1 MTR_4g114870 37.692 130 74 4 6 129 9 137 6.71e-21 90.1
MS.gene35781.t1 MTR_4g114870 44.565 92 46 2 33 119 198 289 3.03e-19 85.5
MS.gene35781.t1 MTR_3g105930 31.613 155 86 3 22 171 24 163 2.42e-20 85.1
MS.gene35781.t1 MTR_8g463180 32.308 130 84 3 4 130 3 131 3.56e-20 87.0
MS.gene35781.t1 MTR_7g086140 37.815 119 70 4 6 122 8 124 6.09e-20 83.6
MS.gene35781.t1 MTR_7g086190 37.815 119 70 4 6 122 8 124 6.09e-20 83.6
MS.gene35781.t1 MTR_2g090575 37.073 205 103 10 1 181 1 203 6.22e-20 87.4
MS.gene35781.t1 MTR_6g013420 36.242 149 85 7 6 147 18 163 1.29e-19 83.2
MS.gene35781.t1 MTR_2g101300 36.090 133 74 4 27 154 29 155 4.39e-19 82.0
MS.gene35781.t1 MTR_2g043730 37.607 117 65 5 7 119 11 123 5.35e-19 80.1
MS.gene35781.t1 MTR_0334s0010 34.746 118 73 2 4 118 7 123 1.02e-18 81.3
MS.gene35781.t1 MTR_1g105130 35.593 118 72 4 6 121 7 122 2.77e-18 79.0
MS.gene35781.t1 MTR_1g105120 35.593 118 72 4 6 121 7 122 2.77e-18 79.0
MS.gene35781.t1 MTR_7g086160 34.454 119 75 3 6 122 8 125 1.14e-17 77.4
MS.gene35781.t1 MTR_5g088000 35.714 126 76 4 6 128 1 124 1.46e-17 76.6
MS.gene35781.t1 MTR_4g130800 35.714 126 75 3 6 125 9 134 3.94e-17 78.2
MS.gene35781.t1 MTR_2g079030 29.327 208 128 7 1 194 1 203 4.57e-17 79.7
MS.gene35781.t1 MTR_7g086220 35.593 118 72 4 7 122 8 123 6.31e-17 75.5
MS.gene35781.t1 MTR_8g086360 32.000 175 91 6 8 167 1 162 8.43e-17 75.9
MS.gene35781.t1 MTR_4g078410 35.211 142 81 6 27 158 27 167 1.43e-16 75.1
MS.gene35781.t1 MTR_8g094990 29.703 202 113 7 1 180 1 195 2.87e-16 76.3
MS.gene35781.t1 MTR_4g081100 34.188 117 71 3 13 124 20 135 3.07e-16 75.1
MS.gene35781.t1 MTR_6g013200 36.364 132 76 5 4 132 14 140 5.36e-16 73.2
MS.gene35781.t1 MTR_8g095013 29.596 223 117 8 1 195 1 211 6.97e-16 75.5
MS.gene35781.t1 MTR_8g099220 36.111 108 64 3 15 118 19 125 7.06e-16 72.0
MS.gene35781.t1 MTR_3g089005 35.000 120 69 6 4 119 10 124 7.71e-16 71.6
MS.gene35781.t1 MTR_6g022170 37.931 87 53 1 43 129 56 141 8.35e-16 72.8
MS.gene35781.t1 MTR_3g117110 33.333 123 79 3 25 145 30 151 1.56e-15 72.0
MS.gene35781.t1 MTR_3g089035 40.000 100 55 4 20 118 28 123 2.08e-15 70.5
MS.gene35781.t1 MTR_7g086090 32.231 121 79 3 1 119 1 120 2.22e-15 73.2
MS.gene35781.t1 MTR_6g083240 34.591 159 92 6 2 152 7 161 2.52e-15 71.6
MS.gene35781.t1 MTR_4g130780 31.092 119 76 3 6 118 9 127 3.12e-15 71.6
MS.gene35781.t1 MTR_1g112700 30.714 140 89 5 6 141 17 152 3.79e-15 71.2
MS.gene35781.t1 MTR_2g090580 33.333 150 88 6 27 167 29 175 4.97e-15 71.2
MS.gene35781.t1 MTR_7g086100 34.579 107 68 2 19 124 20 125 4.99e-15 72.0
MS.gene35781.t1 MTR_4g077787 31.884 138 85 4 6 136 13 148 5.22e-15 70.9
MS.gene35781.t1 MTR_4g111640 31.579 152 92 5 6 147 13 162 5.28e-15 70.9
MS.gene35781.t1 MTR_2g043790 38.235 102 58 4 19 119 1 98 5.86e-15 68.6
MS.gene35781.t1 MTR_5g088170 35.714 112 67 4 20 128 11 120 5.87e-15 70.1
MS.gene35781.t1 MTR_1g077790 38.961 77 46 1 43 118 51 127 8.21e-15 70.5
MS.gene35781.t1 MTR_4g114830 34.615 130 74 5 14 133 17 145 1.28e-14 69.3
MS.gene35781.t1 MTR_5g088180 34.821 112 68 4 20 128 24 133 1.59e-14 69.3
MS.gene35781.t1 MTR_5g087970 33.846 130 77 4 6 128 10 137 2.93e-14 68.6
MS.gene35781.t1 MTR_4g130800 35.514 107 64 2 24 125 27 133 3.17e-14 70.5
MS.gene35781.t1 MTR_6g013170 37.984 129 68 8 25 148 31 152 1.00e-13 67.4
MS.gene35781.t1 MTR_4g112310 33.333 111 69 3 41 147 3 112 1.08e-13 66.2
MS.gene35781.t1 MTR_7g086230 29.752 121 80 3 1 118 1 119 1.65e-13 66.6
MS.gene35781.t1 MTR_4g067200 31.159 138 82 5 4 134 7 138 4.21e-13 65.5
MS.gene35781.t1 MTR_4g066110 31.159 138 82 5 4 134 7 138 4.21e-13 65.5
MS.gene35781.t1 MTR_2g083250 35.714 112 64 5 22 126 23 133 1.31e-12 65.9
MS.gene35781.t1 MTR_7g086280 33.981 103 62 4 19 118 20 119 1.33e-12 64.3
MS.gene35781.t1 MTR_1g090420 27.879 165 107 6 4 164 8 164 1.40e-12 65.1
MS.gene35781.t1 MTR_8g095020 33.333 153 84 7 27 169 27 171 6.81e-12 64.3
MS.gene35781.t1 MTR_4g124280 29.688 192 100 8 29 213 28 191 7.05e-12 63.2
MS.gene35781.t1 MTR_7g090170 27.273 154 77 3 22 171 24 146 9.99e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35781.t1 AT2G32300 50.000 134 63 4 1 131 1 133 2.11e-43 147
MS.gene35781.t1 AT2G32300 50.000 134 63 4 1 131 31 163 1.03e-42 146
MS.gene35781.t1 AT3G27200 38.136 118 70 3 6 121 6 122 3.96e-29 107
MS.gene35781.t1 AT3G60270 49.474 95 48 0 29 123 29 123 5.02e-28 105
MS.gene35781.t1 AT5G07475 36.842 152 86 3 8 150 13 163 7.52e-28 105
MS.gene35781.t1 AT5G53870 34.211 190 107 6 4 177 10 197 4.07e-26 104
MS.gene35781.t1 AT5G53870 34.211 190 107 6 4 177 10 197 6.65e-26 103
MS.gene35781.t1 AT2G25060 38.849 139 74 5 15 142 21 159 3.93e-25 97.8
MS.gene35781.t1 AT2G31050 39.844 128 69 3 12 131 10 137 1.05e-24 97.1
MS.gene35781.t1 AT2G26720 37.903 124 70 2 10 126 8 131 3.66e-24 95.9
MS.gene35781.t1 AT4G30590 33.553 152 78 5 1 130 1 151 8.68e-23 91.7
MS.gene35781.t1 AT4G31840 35.659 129 77 3 27 150 29 156 1.89e-21 87.8
MS.gene35781.t1 AT3G60280 42.857 91 52 0 33 123 31 121 3.21e-21 88.6
MS.gene35781.t1 AT4G27520 36.420 162 82 6 4 162 13 156 5.86e-21 90.1
MS.gene35781.t1 AT1G72230 42.353 85 49 0 34 118 31 115 1.83e-20 85.5
MS.gene35781.t1 AT5G57920 32.117 137 87 3 26 156 56 192 3.41e-20 85.5
MS.gene35781.t1 AT5G57920 35.294 102 61 2 26 122 24 125 3.78e-20 84.7
MS.gene35781.t1 AT5G57920 32.117 137 87 3 26 156 23 159 8.29e-20 83.6
MS.gene35781.t1 AT5G26330 29.670 182 103 6 6 184 5 164 2.26e-19 82.8
MS.gene35781.t1 AT2G44790 40.217 92 53 1 34 123 36 127 7.65e-19 81.6
MS.gene35781.t1 AT3G17675 35.043 117 74 2 4 119 11 126 2.58e-18 78.6
MS.gene35781.t1 AT5G25090 33.913 115 71 2 15 124 16 130 2.62e-18 79.7
MS.gene35781.t1 AT4G12880 39.000 100 56 4 22 118 26 123 4.71e-18 78.2
MS.gene35781.t1 AT2G23990 33.333 141 81 4 10 137 5 145 1.37e-17 78.6
MS.gene35781.t1 AT1G22480 45.882 85 46 0 34 118 27 111 6.56e-17 75.9
MS.gene35781.t1 AT3G20570 35.088 114 69 3 15 124 20 132 1.06e-16 75.9
MS.gene35781.t1 AT1G64640 37.255 102 57 3 43 141 53 150 5.60e-16 73.9
MS.gene35781.t1 AT4G28365 30.814 172 109 6 3 167 4 172 8.59e-16 73.6
MS.gene35781.t1 AT1G48940 34.351 131 77 4 1 124 1 129 4.03e-15 71.2
MS.gene35781.t1 AT2G27035 34.259 108 67 4 25 130 28 133 4.38e-14 68.2
MS.gene35781.t1 AT2G23990 30.882 136 69 4 27 137 29 164 3.13e-13 67.0
MS.gene35781.t1 AT3G18590 32.258 124 71 4 9 121 6 127 3.99e-13 65.9
MS.gene35781.t1 AT5G14345 34.653 101 63 2 35 133 30 129 5.21e-13 64.7
MS.gene35781.t1 AT4G32490 28.144 167 118 2 3 167 9 175 6.34e-13 66.2
MS.gene35781.t1 AT5G20230 37.349 83 51 1 42 123 44 126 2.44e-12 63.9
MS.gene35781.t1 AT1G79800 31.250 96 65 1 43 138 56 150 5.92e-12 62.8
MS.gene35781.t1 AT4G12880 38.889 72 40 3 49 118 16 85 9.07e-12 60.1
MS.gene35781.t1 AT2G02850 34.066 91 56 3 29 118 39 126 2.42e-11 59.7

Find 62 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAAGGACTTGGCGCTTC+AGG 0.262695 2.1:+13037081 None:intergenic
TGTGGCTATGCTAATCAAAT+TGG 0.271323 2.1:-13037706 MS.gene35781:CDS
CGATTTCAACCTTCATTCCT+TGG 0.319611 2.1:+13037232 None:intergenic
CCATCATTGTAGGATTGAAT+TGG 0.330428 2.1:+13037324 None:intergenic
CATCATGGTTTGGTGGATAC+TGG 0.344644 2.1:+13037394 None:intergenic
GTGTTTATGACCTTCTTCTA+AGG 0.345543 2.1:-13036895 None:intergenic
ATTGAATTGGATTTGTTTGC+TGG 0.369249 2.1:+13037337 None:intergenic
TTTGTATCCCACCCACCATT+TGG 0.382646 2.1:+13037654 None:intergenic
TACTTCATTTGTGGAACAAT+AGG 0.386246 2.1:-13037264 MS.gene35781:CDS
GGCTTGTAGATTTCCTTTCT+CGG 0.389537 2.1:+13036948 None:intergenic
TAAACTCAACACTATTGAAA+TGG 0.395203 2.1:+13036924 None:intergenic
TGTCTCCCACTGAAAATTGC+TGG 0.409535 2.1:+13037604 None:intergenic
ACCATTCCTCTCACATCAAC+AGG 0.409662 2.1:-13037294 MS.gene35781:CDS
AACTCAGTGGATGGAATCAT+TGG 0.412975 2.1:+13037027 None:intergenic
GGTTGTGGCACCATCATTGT+AGG 0.418651 2.1:+13037314 None:intergenic
GGCAAAAGATACTTCATTTG+TGG 0.426964 2.1:-13037273 MS.gene35781:CDS
CAAACTCAAACCTTCAATCA+TGG 0.439667 2.1:-13037635 MS.gene35781:CDS
CACATTGTTGGAGGACCAAA+TGG 0.441037 2.1:-13037669 MS.gene35781:CDS
TCGGCCTCATCGACCGAGAA+AGG 0.446703 2.1:-13036961 MS.gene35781:CDS
ATTGGAGAGTCTGCTATTGA+AGG 0.471110 2.1:+13037162 None:intergenic
ACTTCAACCACATCATGGTT+TGG 0.472827 2.1:+13037384 None:intergenic
TGTGTTTCAAACAAAGGACT+TGG 0.474320 2.1:+13037072 None:intergenic
ATTGAAGGTTCTGCTGCTAC+TGG 0.475658 2.1:+13037177 None:intergenic
TCCTGTGAATGTTGTGCTAT+AGG 0.480835 2.1:+13036988 None:intergenic
TCCTATAGCACAACATTCAC+AGG 0.486894 2.1:-13036989 MS.gene35781:CDS
GAGGGAATGATGGAAATCAT+TGG 0.490266 2.1:+13037144 None:intergenic
CCAATTCAATCCTACAATGA+TGG 0.493235 2.1:-13037324 MS.gene35781:CDS
AATTGGATTTGTTTGCTGGC+AGG 0.504490 2.1:+13037341 None:intergenic
ATGGCTACAAATCACATTGT+TGG 0.506134 2.1:-13037681 MS.gene35781:CDS
GTCTCCCACTGAAAATTGCT+GGG 0.517061 2.1:+13037605 None:intergenic
TTGTAACTTCAACCACATCA+TGG 0.532734 2.1:+13037379 None:intergenic
ACAATAGGACATTGCAGCCA+AGG 0.536238 2.1:-13037249 MS.gene35781:CDS
TCTGCTGCTACTGGTGAGGC+AGG 0.537334 2.1:+13037186 None:intergenic
TCTGCTTGTGTTTCAAACAA+AGG 0.541592 2.1:+13037066 None:intergenic
GCCTGTTGATGTGAGAGGAA+TGG 0.541643 2.1:+13037293 None:intergenic
AACAATGTGATTTGTAGCCA+TGG 0.542196 2.1:+13037683 None:intergenic
ACATTGCAGCCAAGGAATGA+AGG 0.543328 2.1:-13037241 MS.gene35781:CDS
GGGAAGATGCCCATGATTGA+AGG 0.551803 2.1:+13037625 None:intergenic
AAACTCAAACCTTCAATCAT+GGG 0.565295 2.1:-13037634 MS.gene35781:CDS
TTGGAGGACCAAATGGTGGG+TGG 0.577194 2.1:-13037662 MS.gene35781:CDS
GATGAAACAGTAGATTCTGC+AGG 0.577330 2.1:+13037114 None:intergenic
ATTTCCTTTCTCGGTCGATG+AGG 0.581260 2.1:+13036957 None:intergenic
GGAGCTAGAAACTCAGTGGA+TGG 0.587416 2.1:+13037018 None:intergenic
AGATTCTGCAGGTGCTGCAG+AGG 0.587849 2.1:+13037125 None:intergenic
TGTTGTGCTATAGGAGAGGA+AGG 0.587966 2.1:+13036997 None:intergenic
ACAACATTCACAGGATGTAT+CGG 0.591172 2.1:-13036980 MS.gene35781:CDS
TGGAGGACCAAATGGTGGGT+GGG 0.594340 2.1:-13037661 MS.gene35781:CDS
TATGCTAATCAAATTGGCCA+TGG 0.594784 2.1:-13037700 MS.gene35781:CDS
AGGTGCTGCAGAGGGAATGA+TGG 0.596865 2.1:+13037134 None:intergenic
GCTACAAATCACATTGTTGG+AGG 0.598903 2.1:-13037678 MS.gene35781:CDS
GGAATCATTGGAGAGAGTGT+AGG 0.602725 2.1:+13037039 None:intergenic
TCAACCACATCATGGTTTGG+TGG 0.604647 2.1:+13037387 None:intergenic
ACTCAACACTATTGAAATGG+AGG 0.606412 2.1:+13036927 None:intergenic
GATTCTGCAGGTGCTGCAGA+GGG 0.609354 2.1:+13037126 None:intergenic
AATAGTGTTGAGTTTAGTAG+CGG 0.615409 2.1:-13036917 MS.gene35781:CDS
AGGTTCTGCTGCTACTGGTG+AGG 0.629522 2.1:+13037182 None:intergenic
GGAAGGAGCTAGAAACTCAG+TGG 0.633216 2.1:+13037014 None:intergenic
TGATGTGAGAGGAATGGTTG+TGG 0.649255 2.1:+13037299 None:intergenic
ATTGTTGGAGGACCAAATGG+TGG 0.666142 2.1:-13037666 MS.gene35781:CDS
GTATCCACCAAACCATGATG+TGG 0.674142 2.1:-13037391 MS.gene35781:CDS
TTGTTGGAGGACCAAATGGT+GGG 0.681492 2.1:-13037665 MS.gene35781:CDS
TGAATGTTGTGCTATAGGAG+AGG 0.726891 2.1:+13036993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATTAAAGTTAATCGAA+TGG + chr2.1:13037156-13037175 None:intergenic 20.0%
! ATATAGTAAGCGCTTAATTA+AGG - chr2.1:13037123-13037142 MS.gene35781:CDS 25.0%
! TAAACTCAACACTATTGAAA+TGG + chr2.1:13037717-13037736 None:intergenic 25.0%
!!! CATTCTAAGAATATCTTTTG+TGG - chr2.1:13036914-13036933 MS.gene35781:CDS 25.0%
AAACTCAAACCTTCAATCAT+GGG - chr2.1:13037004-13037023 MS.gene35781:CDS 30.0%
TACTTCATTTGTGGAACAAT+AGG - chr2.1:13037374-13037393 MS.gene35781:CDS 30.0%
! AATAGTGTTGAGTTTAGTAG+CGG - chr2.1:13037721-13037740 MS.gene35781:CDS 30.0%
! ATTGAATTGGATTTGTTTGC+TGG + chr2.1:13037304-13037323 None:intergenic 30.0%
ACAACATTCACAGGATGTAT+CGG - chr2.1:13037658-13037677 MS.gene35781:CDS 35.0%
ACTCAACACTATTGAAATGG+AGG + chr2.1:13037714-13037733 None:intergenic 35.0%
ATGGCTACAAATCACATTGT+TGG - chr2.1:13036957-13036976 MS.gene35781:CDS 35.0%
CAAACTCAAACCTTCAATCA+TGG - chr2.1:13037003-13037022 MS.gene35781:CDS 35.0%
CCAATTCAATCCTACAATGA+TGG - chr2.1:13037314-13037333 MS.gene35781:CDS 35.0%
CCATCATTGTAGGATTGAAT+TGG + chr2.1:13037317-13037336 None:intergenic 35.0%
GGCAAAAGATACTTCATTTG+TGG - chr2.1:13037365-13037384 MS.gene35781:CDS 35.0%
TATGCTAATCAAATTGGCCA+TGG - chr2.1:13036938-13036957 MS.gene35781:CDS 35.0%
TCTGCTTGTGTTTCAAACAA+AGG + chr2.1:13037575-13037594 None:intergenic 35.0%
TGTGGCTATGCTAATCAAAT+TGG - chr2.1:13036932-13036951 MS.gene35781:CDS 35.0%
TGTGTTTCAAACAAAGGACT+TGG + chr2.1:13037569-13037588 None:intergenic 35.0%
TTGTAACTTCAACCACATCA+TGG + chr2.1:13037262-13037281 None:intergenic 35.0%
! AACAATGTGATTTGTAGCCA+TGG + chr2.1:13036958-13036977 None:intergenic 35.0%
AACTCAGTGGATGGAATCAT+TGG + chr2.1:13037614-13037633 None:intergenic 40.0%
ACTTCAACCACATCATGGTT+TGG + chr2.1:13037257-13037276 None:intergenic 40.0%
ATTGGAGAGTCTGCTATTGA+AGG + chr2.1:13037479-13037498 None:intergenic 40.0%
CGATTTCAACCTTCATTCCT+TGG + chr2.1:13037409-13037428 None:intergenic 40.0%
GATGAAACAGTAGATTCTGC+AGG + chr2.1:13037527-13037546 None:intergenic 40.0%
GCTACAAATCACATTGTTGG+AGG - chr2.1:13036960-13036979 MS.gene35781:CDS 40.0%
GGCTTGTAGATTTCCTTTCT+CGG + chr2.1:13037693-13037712 None:intergenic 40.0%
TCCTATAGCACAACATTCAC+AGG - chr2.1:13037649-13037668 MS.gene35781:CDS 40.0%
TCCTGTGAATGTTGTGCTAT+AGG + chr2.1:13037653-13037672 None:intergenic 40.0%
TGAATGTTGTGCTATAGGAG+AGG + chr2.1:13037648-13037667 None:intergenic 40.0%
! AATTGGATTTGTTTGCTGGC+AGG + chr2.1:13037300-13037319 None:intergenic 40.0%
! ATCTTCCCAGCAATTTTCAG+TGG - chr2.1:13037028-13037047 MS.gene35781:CDS 40.0%
! GAGGGAATGATGGAAATCAT+TGG + chr2.1:13037497-13037516 None:intergenic 40.0%
! TCTTCCCAGCAATTTTCAGT+GGG - chr2.1:13037029-13037048 MS.gene35781:CDS 40.0%
ACAATAGGACATTGCAGCCA+AGG - chr2.1:13037389-13037408 MS.gene35781:CDS 45.0%
ACATTGCAGCCAAGGAATGA+AGG - chr2.1:13037397-13037416 MS.gene35781:CDS 45.0%
ACCATTCCTCTCACATCAAC+AGG - chr2.1:13037344-13037363 MS.gene35781:CDS 45.0%
ATTGAAGGTTCTGCTGCTAC+TGG + chr2.1:13037464-13037483 None:intergenic 45.0%
ATTGTTGGAGGACCAAATGG+TGG - chr2.1:13036972-13036991 MS.gene35781:CDS 45.0%
ATTTCCTTTCTCGGTCGATG+AGG + chr2.1:13037684-13037703 None:intergenic 45.0%
CACATTGTTGGAGGACCAAA+TGG - chr2.1:13036969-13036988 MS.gene35781:CDS 45.0%
GTATCCACCAAACCATGATG+TGG - chr2.1:13037247-13037266 MS.gene35781:CDS 45.0%
GTCTCCCACTGAAAATTGCT+GGG + chr2.1:13037036-13037055 None:intergenic 45.0%
TGATGTGAGAGGAATGGTTG+TGG + chr2.1:13037342-13037361 None:intergenic 45.0%
TGTCTCCCACTGAAAATTGC+TGG + chr2.1:13037037-13037056 None:intergenic 45.0%
TGTTGTGCTATAGGAGAGGA+AGG + chr2.1:13037644-13037663 None:intergenic 45.0%
TTGTTGGAGGACCAAATGGT+GGG - chr2.1:13036973-13036992 MS.gene35781:CDS 45.0%
TTTGTATCCCACCCACCATT+TGG + chr2.1:13036987-13037006 None:intergenic 45.0%
! CTTTTGCCTGTTGATGTGAG+AGG + chr2.1:13037353-13037372 None:intergenic 45.0%
! GGAATCATTGGAGAGAGTGT+AGG + chr2.1:13037602-13037621 None:intergenic 45.0%
! TCAACCACATCATGGTTTGG+TGG + chr2.1:13037254-13037273 None:intergenic 45.0%
!! CATCATGGTTTGGTGGATAC+TGG + chr2.1:13037247-13037266 None:intergenic 45.0%
AACAAAGGACTTGGCGCTTC+AGG + chr2.1:13037560-13037579 None:intergenic 50.0%
GCCTGTTGATGTGAGAGGAA+TGG + chr2.1:13037348-13037367 None:intergenic 50.0%
GGAAGGAGCTAGAAACTCAG+TGG + chr2.1:13037627-13037646 None:intergenic 50.0%
GGAGCTAGAAACTCAGTGGA+TGG + chr2.1:13037623-13037642 None:intergenic 50.0%
GGGAAGATGCCCATGATTGA+AGG + chr2.1:13037016-13037035 None:intergenic 50.0%
GGTTGTGGCACCATCATTGT+AGG + chr2.1:13037327-13037346 None:intergenic 50.0%
AGGTTCTGCTGCTACTGGTG+AGG + chr2.1:13037459-13037478 None:intergenic 55.0%
! AGATTCTGCAGGTGCTGCAG+AGG + chr2.1:13037516-13037535 None:intergenic 55.0%
! AGGTGCTGCAGAGGGAATGA+TGG + chr2.1:13037507-13037526 None:intergenic 55.0%
! GATTCTGCAGGTGCTGCAGA+GGG + chr2.1:13037515-13037534 None:intergenic 55.0%
! TTGGAGGACCAAATGGTGGG+TGG - chr2.1:13036976-13036995 MS.gene35781:CDS 55.0%
!! TGGAGGACCAAATGGTGGGT+GGG - chr2.1:13036977-13036996 MS.gene35781:CDS 55.0%
TCGGCCTCATCGACCGAGAA+AGG - chr2.1:13037677-13037696 MS.gene35781:CDS 60.0%
TCTGCTGCTACTGGTGAGGC+AGG + chr2.1:13037455-13037474 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 13036897 13037763 13036897 ID=MS.gene35781
chr2.1 mRNA 13036897 13037763 13036897 ID=MS.gene35781.t1;Parent=MS.gene35781
chr2.1 exon 13037598 13037763 13037598 ID=MS.gene35781.t1.exon1;Parent=MS.gene35781.t1
chr2.1 CDS 13037598 13037763 13037598 ID=cds.MS.gene35781.t1;Parent=MS.gene35781.t1
chr2.1 exon 13036897 13037420 13036897 ID=MS.gene35781.t1.exon2;Parent=MS.gene35781.t1
chr2.1 CDS 13036897 13037420 13036897 ID=cds.MS.gene35781.t1;Parent=MS.gene35781.t1
Gene Sequence

>MS.gene35781

ATGGGTGTACTTGAAATCATTCTAAGAATATCTTTTGTGGCTATGCTAATCAAATTGGCCATGGCTACAAATCACATTGTTGGAGGACCAAATGGTGGGTGGGATACAAACTCAAACCTTCAATCATGGGCATCTTCCCAGCAATTTTCAGTGGGAGACAATCTTAGTAAGTCACTATACATTAATTTCATCTTTTATTATAAAAATAGCTTATACATATGCACTCATATAGTAAGCGCTTAATTAAGGCATTTATCCATTCGATTAACTTTAATTTGAAATATAGTGCATATTTTATATGAAAGTTGTTCTAAATTGATGAGATTGACAATGATATATGCAGTTTTCCAGTATCCACCAAACCATGATGTGGTTGAAGTTACAAAAGCAGACTATGACTCCTGCCAGCAAACAAATCCAATTCAATCCTACAATGATGGTGCCACAACCATTCCTCTCACATCAACAGGCAAAAGATACTTCATTTGTGGAACAATAGGACATTGCAGCCAAGGAATGAAGGTTGAAATCGACACACTTGCTGCTCAAGTTTCTCCTGCCTCACCAGTAGCAGCAGAACCTTCAATAGCAGACTCTCCAATGATTTCCATCATTCCCTCTGCAGCACCTGCAGAATCTACTGTTTCATCTGCAGAATCTCCTGAAGCGCCAAGTCCTTTGTTTGAAACACAAGCAGAAAGTCCTACACTCTCTCCAATGATTCCATCCACTGAGTTTCTAGCTCCTTCCTCTCCTATAGCACAACATTCACAGGATGTATCGGCCTCATCGACCGAGAAAGGAAATCTACAAGCCTCCATTTCAATAGTGTTGAGTTTAGTAGCGGTGTTTATGACCTTCTTCTAA
Protein sequence

>MS.gene35781.t1

MGVLEIILRISFVAMLIKLAMATNHIVGGPNGGWDTNSNLQSWASSQQFSVGDNLIFQYPPNHDVVEVTKADYDSCQQTNPIQSYNDGATTIPLTSTGKRYFICGTIGHCSQGMKVEIDTLAAQVSPASPVAAEPSIADSPMISIIPSAAPAESTVSSAESPEAPSPLFETQAESPTLSPMIPSTEFLAPSSPIAQHSQDVSASSTEKGNLQASISIVLSLVAVFMTFF