AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36138


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36138.t1 MTR_4g094235 97.203 286 2 1 1 286 1 280 0.0 516
MS.gene36138.t1 MTR_4g094235 96.864 287 2 2 1 286 1 281 0.0 512
MS.gene36138.t1 MTR_5g070450 77.003 287 45 2 1 286 1 267 3.22e-90 269
MS.gene36138.t1 MTR_4g118630 38.961 77 47 0 17 93 49 125 2.18e-14 72.4
MS.gene36138.t1 MTR_3g083550 41.558 77 45 0 17 93 42 118 1.26e-13 69.3
MS.gene36138.t1 MTR_5g079870 43.750 80 45 0 13 92 44 123 2.26e-13 69.3
MS.gene36138.t1 MTR_1g054675 41.558 77 45 0 17 93 44 120 2.48e-13 68.2
MS.gene36138.t1 MTR_3g025880 43.421 76 43 0 18 93 46 121 5.21e-13 68.9
MS.gene36138.t1 MTR_5g070100 42.105 76 44 0 14 89 34 109 2.05e-12 67.0
MS.gene36138.t1 MTR_6g477870 39.474 76 46 0 18 93 97 172 1.28e-11 62.8
MS.gene36138.t1 MTR_7g106440 40.909 88 52 0 18 105 111 198 4.67e-11 62.8
MS.gene36138.t1 MTR_5g023060 38.961 77 47 0 17 93 132 208 7.59e-11 62.0
MS.gene36138.t1 MTR_4g109540 37.975 79 49 0 15 93 41 119 7.61e-11 61.6
MS.gene36138.t1 MTR_4g081520 35.065 77 50 0 17 93 52 128 7.81e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36138.t1 AT5G64200 58.824 306 92 7 1 279 1 299 1.56e-75 233
MS.gene36138.t1 AT5G64200 58.824 306 92 7 1 279 1 299 1.56e-75 233
MS.gene36138.t1 AT5G18810 39.474 76 46 0 18 93 49 124 1.33e-15 74.7
MS.gene36138.t1 AT5G18810 39.474 76 46 0 18 93 49 124 1.35e-15 74.7
MS.gene36138.t1 AT1G55310 41.558 77 45 0 17 93 37 113 3.74e-14 71.6
MS.gene36138.t1 AT1G55310 41.558 77 45 0 17 93 37 113 4.29e-14 70.5
MS.gene36138.t1 AT1G55310 41.558 77 45 0 17 93 37 113 4.29e-14 70.5
MS.gene36138.t1 AT3G10400 37.778 90 56 0 17 106 58 147 2.16e-12 66.2
MS.gene36138.t1 AT3G47120 41.667 72 42 0 18 89 38 109 4.22e-12 66.2
MS.gene36138.t1 AT3G47120 41.667 72 42 0 18 89 38 109 4.70e-12 65.5
MS.gene36138.t1 AT5G03580 39.189 74 44 1 17 90 18 90 6.73e-12 61.2
MS.gene36138.t1 AT5G06210 40.789 76 45 0 18 93 36 111 1.33e-11 61.6
MS.gene36138.t1 AT5G54580 35.065 77 50 0 17 93 57 133 3.46e-11 60.8
MS.gene36138.t1 AT1G73530 38.158 76 47 0 18 93 79 154 4.55e-11 61.2

Find 99 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCGTTGTTTGATAAGTA+TGG 0.248443 4.2:-19007579 MS.gene36138:CDS
TTTGGAGATGGGCTCCTCTT+TGG 0.256933 4.2:+19005538 None:intergenic
TTTGAATACCTTCGATCTTT+GGG 0.287302 4.2:+19007534 None:intergenic
ACTTACATCCTCTCAGCATT+AGG 0.296368 4.2:+19007212 None:intergenic
ACTTATCAAACAACGGAAAT+AGG 0.314806 4.2:+19007583 None:intergenic
ACTGTCCAGTTTGCAAAATA+TGG 0.319049 4.2:-19007236 MS.gene36138:CDS
TCCTTGAGCTCTTTGATCTC+GGG 0.321129 4.2:+19006669 None:intergenic
CTCCTTGAGCTCTTTGATCT+CGG 0.321782 4.2:+19006668 None:intergenic
TTCAGAGAAGGGCTCCTCTT+TGG 0.328760 4.2:+19005520 None:intergenic
CCACCACGGCTACGACTATC+AGG 0.357715 4.2:+19005439 None:intergenic
GGTTACAAGGGCCGTGGAAG+GGG 0.372918 4.2:-19005766 MS.gene36138:CDS
ACAGACACCGTGGGCGAGAT+AGG 0.379124 4.2:-19005828 MS.gene36138:CDS
GTGCACTCACCTTCTCTTGC+TGG 0.388981 4.2:+19006637 None:intergenic
ACTACAAAGAAAAGGATTAC+AGG 0.405827 4.2:-19005891 MS.gene36138:CDS
TTTGGAGAAGGGCTCCTCCT+TGG 0.415577 4.2:+19005556 None:intergenic
CTTACATCCTCTCAGCATTA+GGG 0.418601 4.2:+19007213 None:intergenic
GGAATAGAACTGCGTCGCAC+TGG 0.428015 4.2:+19005595 None:intergenic
GAGTAGGTATCGGAGATGTC+TGG 0.437496 4.2:+19007734 None:intergenic
ACCTGTCCACTGATCTGCTT+CGG 0.440722 4.2:+19005713 None:intergenic
CCCTCTCCTCGAAATTCAAA+TGG 0.450770 4.2:-19005358 MS.gene36138:CDS
TGGTTACAAGGGCCGTGGAA+GGG 0.452023 4.2:-19005767 MS.gene36138:CDS
CCATTTGAATTTCGAGGAGA+GGG 0.467296 4.2:+19005358 None:intergenic
ACATCACCATTTGAATTTCG+AGG 0.468064 4.2:+19005352 None:intergenic
GTCTCACCACGAGGTCGTCC+TGG 0.468843 4.2:-19005394 MS.gene36138:CDS
ATGTCTCACTTCGGTAGGTC+AGG 0.470526 4.2:-19007761 MS.gene36138:CDS
GATGGGCTCCTCTTTGGAGA+AGG 0.471297 4.2:+19005544 None:intergenic
AAGCTTCCAAGGCTGTTGAT+AGG 0.471644 4.2:-19007380 MS.gene36138:CDS
GAAGGGCTCCTCTTTGGAGA+TGG 0.483384 4.2:+19005526 None:intergenic
CTGGTTACAAGGGCCGTGGA+AGG 0.484019 4.2:-19005768 MS.gene36138:CDS
GAATAGAACTGCGTCGCACT+GGG 0.488305 4.2:+19005596 None:intergenic
CTTCCACGGCCCTTGTAACC+AGG 0.492291 4.2:+19005769 None:intergenic
TAGTGCTAGTCCTGGTTACA+AGG 0.492924 4.2:-19005779 MS.gene36138:CDS
GAAGGGCTCCTCCTTGGAGA+AGG 0.499345 4.2:+19005562 None:intergenic
GTTACAAGGGCCGTGGAAGG+GGG 0.499632 4.2:-19005765 MS.gene36138:CDS
GGCTTCTGCTTCGGCGACGA+TGG 0.500908 4.2:+19005803 None:intergenic
GTCGAGCCTATCAACAGCCT+TGG 0.507162 4.2:+19007374 None:intergenic
CGGAAATAGGTCATCGGCGG+TGG 0.508213 4.2:+19007596 None:intergenic
GTCGCAGCAGGAGTTATGAT+AGG 0.511200 4.2:-19005861 MS.gene36138:CDS
ATGGGCTCCTCTTTGGAGAA+GGG 0.516159 4.2:+19005545 None:intergenic
TCGTGATGACTACAAAGAAA+AGG 0.517915 4.2:-19005899 MS.gene36138:CDS
TAGCACTACGGCTTCTGCTT+CGG 0.518667 4.2:+19005794 None:intergenic
AACTGCGTCGCACTGGGGAG+CGG 0.520493 4.2:+19005602 None:intergenic
AAGGGCTCCTCTTTGGAGAT+GGG 0.523115 4.2:+19005527 None:intergenic
GCCGAAGCAGATCAGTGGAC+AGG 0.523668 4.2:-19005714 MS.gene36138:intron
TGCACTCACCTTCTCTTGCT+GGG 0.524949 4.2:+19006638 None:intergenic
ACAGGAGGAGAAGTCGCAGC+AGG 0.531528 4.2:-19005873 MS.gene36138:CDS
TTATTTACAGTCAGAAAGGA+AGG 0.534511 4.2:-19006706 MS.gene36138:intron
GTTGAGAACAAGGAGAGAGT+AGG 0.544195 4.2:+19007718 None:intergenic
GCCGCAGTCCCAGCAAGAGA+AGG 0.547662 4.2:-19006646 MS.gene36138:intron
TACGACTATCAGGACTTTCA+CGG 0.548540 4.2:+19005449 None:intergenic
CCTTGAGCTCTTTGATCTCG+GGG 0.548590 4.2:+19006670 None:intergenic
CAGACACCGTGGGCGAGATA+GGG 0.549814 4.2:-19005827 MS.gene36138:CDS
AGTCCTGGTTACAAGGGCCG+TGG 0.550812 4.2:-19005772 MS.gene36138:CDS
ATATGCTGATGAAGCTTCCA+AGG 0.553657 4.2:-19007391 MS.gene36138:CDS
TTGAATACCTTCGATCTTTG+GGG 0.554262 4.2:+19007535 None:intergenic
GAGGGGCTTCGAGAAGCACC+AGG 0.555902 4.2:+19005376 None:intergenic
TACTACGACGCTCATCATCA+TGG 0.556930 4.2:+19005740 None:intergenic
AACAAGGAGAGAGTAGGTAT+CGG 0.558892 4.2:+19007724 None:intergenic
ACCATTTGAATTTCGAGGAG+AGG 0.563905 4.2:+19005357 None:intergenic
ATAGTCGTAGCCGTGGTGGA+AGG 0.568556 4.2:-19005435 MS.gene36138:CDS
GTTGTTTGATAAGTATGGCA+AGG 0.571156 4.2:-19007574 MS.gene36138:CDS
ACCTTCTCTTGCTGGGACTG+CGG 0.574400 4.2:+19006645 None:intergenic
AAGGGCTCCTCCTTGGAGAA+GGG 0.574735 4.2:+19005563 None:intergenic
AGAGGAGCCCTTCTCTGAAG+AGG 0.576065 4.2:-19005516 MS.gene36138:CDS
GATATGCTCCTCTTCAGAGA+AGG 0.584099 4.2:+19005508 None:intergenic
AGAAGCCGTAGTGCTAGTCC+TGG 0.586089 4.2:-19005787 MS.gene36138:CDS
TAGAAGCCGAAGCAGATCAG+TGG 0.590371 4.2:-19005719 MS.gene36138:CDS
CAACCATGTCTCACTTCGGT+AGG 0.602311 4.2:-19007766 None:intergenic
GAAAGGACTGGTGAATCGAG+AGG 0.603562 4.2:-19007435 MS.gene36138:intron
ATATGCTCCTCTTCAGAGAA+GGG 0.603871 4.2:+19005509 None:intergenic
CCCCGAGATCAAAGAGCTCA+AGG 0.604164 4.2:-19006670 MS.gene36138:CDS
CATTTGAATTTCGAGGAGAG+GGG 0.610211 4.2:+19005359 None:intergenic
GGAAGGTGATGTTGAGAACA+AGG 0.616882 4.2:+19007708 None:intergenic
AAATCAACCATGTCTCACTT+CGG 0.630425 4.2:-19007770 None:intergenic
TTGCCATACTTATCAAACAA+CGG 0.633797 4.2:+19007576 None:intergenic
AAACAACGGAAATAGGTCAT+CGG 0.637663 4.2:+19007590 None:intergenic
TCTTTATCCCCAAAGATCGA+AGG 0.640188 4.2:-19007542 MS.gene36138:intron
GGAGGAGCCCTTCTCCAAAG+AGG 0.643213 4.2:-19005552 MS.gene36138:CDS
TGTAACCAGGACTAGCACTA+CGG 0.646574 4.2:+19005782 None:intergenic
AAGGCTGTTGATAGGCTCGA+CGG 0.648087 4.2:-19007372 MS.gene36138:intron
GATGGTCCCTATCTCGCCCA+CGG 0.651462 4.2:+19005821 None:intergenic
AGAGGAGCCCATCTCCAAAG+AGG 0.655051 4.2:-19005534 MS.gene36138:CDS
AGTCCTGATAGTCGTAGCCG+TGG 0.655730 4.2:-19005442 MS.gene36138:CDS
CCTGATAGTCGTAGCCGTGG+TGG 0.655888 4.2:-19005439 MS.gene36138:CDS
TGACCTACCGAAGTGAGACA+TGG 0.657356 4.2:+19007763 None:intergenic
GCGTAAGAGACCTTCCACCA+CGG 0.658460 4.2:+19005425 None:intergenic
ACAAAGAAAAGGATTACAGG+AGG 0.659007 4.2:-19005888 MS.gene36138:CDS
CTATCAGGACTTTCACGGAG+TGG 0.659967 4.2:+19005454 None:intergenic
AGTGCTAGTCCTGGTTACAA+GGG 0.676008 4.2:-19005778 MS.gene36138:CDS
AAAAGAGCCCTTCTCCAAGG+AGG 0.680058 4.2:-19005570 MS.gene36138:CDS
ATGAACGTGACAGACACCGT+GGG 0.686183 4.2:-19005837 MS.gene36138:CDS
TAGGTATCGGAGATGTCTGG+AGG 0.687472 4.2:+19007737 None:intergenic
GAAGCACCAGGACGACCTCG+TGG 0.693031 4.2:+19005388 None:intergenic
CATGAACGTGACAGACACCG+TGG 0.693971 4.2:-19005838 MS.gene36138:CDS
CCTCGCAGTGTCTCACCACG+AGG 0.694942 4.2:-19005403 MS.gene36138:CDS
AATAGAACTGCGTCGCACTG+GGG 0.699899 4.2:+19005597 None:intergenic
CAACGGAAATAGGTCATCGG+CGG 0.703502 4.2:+19007593 None:intergenic
CCTCGTGGTGAGACACTGCG+AGG 0.721185 4.2:+19005403 None:intergenic
AATATGGCCCTAATGCTGAG+AGG 0.735571 4.2:-19007220 MS.gene36138:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGATAAAAGAAAAATT+GGG + chr4.2:19005507-19005526 None:intergenic 10.0%
!! TAATTTGATAAAAGAAAAAT+TGG + chr4.2:19005508-19005527 None:intergenic 10.0%
!! ATTTGATAAAAGAAAAATTG+GGG + chr4.2:19005506-19005525 None:intergenic 15.0%
!!! ATTTTTCATTTTTGTTATGA+TGG - chr4.2:19005813-19005832 MS.gene36138:CDS 15.0%
!!! TTTTTCTTGTATTTTTTGAA+AGG - chr4.2:19005541-19005560 MS.gene36138:CDS 15.0%
!! AAATTTGAGTGTAAAAATTG+TGG - chr4.2:19006007-19006026 MS.gene36138:intron 20.0%
!! GTTATTCTTGAACTTAATAA+TGG - chr4.2:19007676-19007695 MS.gene36138:intron 20.0%
!! TAAACATTCCAATTATCAAT+TGG - chr4.2:19006918-19006937 MS.gene36138:intron 20.0%
!! TCAAATAACAATAATTATGG+TGG + chr4.2:19007348-19007367 None:intergenic 20.0%
!! TTAACATGCTTAAATTTAAG+AGG + chr4.2:19006639-19006658 None:intergenic 20.0%
!! TTTGATAAAAGAAAAATTGG+GGG + chr4.2:19005505-19005524 None:intergenic 20.0%
!!! TATTTTATTTACAGTCAGAA+AGG - chr4.2:19006283-19006302 MS.gene36138:intron 20.0%
! AAATGTAAATAGAATTGAGC+GGG + chr4.2:19007754-19007773 None:intergenic 25.0%
! ACTAATGTCTAATTGTTTGT+AGG - chr4.2:19007069-19007088 MS.gene36138:intron 25.0%
! ATCATGATGTTTATATAACG+AGG - chr4.2:19005882-19005901 MS.gene36138:CDS 25.0%
! ATCATTGAAAATCCTAGAAA+TGG + chr4.2:19006535-19006554 None:intergenic 25.0%
! CAAATGTAAATAGAATTGAG+CGG + chr4.2:19007755-19007774 None:intergenic 25.0%
! CATCATGATATAGAAAATCA+AGG + chr4.2:19005871-19005890 None:intergenic 25.0%
! GGCTCAAATAACAATAATTA+TGG + chr4.2:19007351-19007370 None:intergenic 25.0%
! TCAATTCTATTTACATTTGC+AGG - chr4.2:19007756-19007775 MS.gene36138:CDS 25.0%
! TTTACTACTGTACATTACAA+TGG + chr4.2:19006902-19006921 None:intergenic 25.0%
!! AGAGTGATCATTGAATTTTA+TGG - chr4.2:19006503-19006522 MS.gene36138:intron 25.0%
!! CATATCAACCAATTGATAAT+TGG + chr4.2:19006929-19006948 None:intergenic 25.0%
!! TTCAATTAGAAGTACAGTTT+AGG + chr4.2:19006725-19006744 None:intergenic 25.0%
!! TTCAATTAGAAGTACAGTTT+CGG + chr4.2:19006725-19006744 None:intergenic 25.0%
!!! AAGAAACGATTGATTTTTTC+AGG - chr4.2:19005709-19005728 MS.gene36138:intron 25.0%
!!! AGAAACGATTGATTTTTTCA+GGG - chr4.2:19005710-19005729 MS.gene36138:intron 25.0%
AAACCTCACAGCTTATATTA+TGG - chr4.2:19006674-19006693 MS.gene36138:CDS 30.0%
ACTACAAAGAAAAGGATTAC+AGG - chr4.2:19007102-19007121 MS.gene36138:intron 30.0%
ACTTATCAAACAACGGAAAT+AGG + chr4.2:19005413-19005432 None:intergenic 30.0%
ATTCAGTTGCATACTGATAT+TGG - chr4.2:19006196-19006215 MS.gene36138:intron 30.0%
CAAACTAAATCTATTCGACA+GGG + chr4.2:19006156-19006175 None:intergenic 30.0%
CAAGTTTGAATGAAATGTAG+AGG - chr4.2:19006059-19006078 MS.gene36138:intron 30.0%
GCTGTGAAGAATAACAAAAA+AGG + chr4.2:19007372-19007391 None:intergenic 30.0%
TATCAGTATGCAACTGAATA+AGG + chr4.2:19006195-19006214 None:intergenic 30.0%
TCAAACTAAATCTATTCGAC+AGG + chr4.2:19006157-19006176 None:intergenic 30.0%
TTATTTACAGTCAGAAAGGA+AGG - chr4.2:19006287-19006306 MS.gene36138:intron 30.0%
TTGCCATACTTATCAAACAA+CGG + chr4.2:19005420-19005439 None:intergenic 30.0%
TTTCCGTTGTTTGATAAGTA+TGG - chr4.2:19005414-19005433 MS.gene36138:CDS 30.0%
TTTGAATACCTTCGATCTTT+GGG + chr4.2:19005462-19005481 None:intergenic 30.0%
! AACAGAGTGTTAGGTTAATT+AGG + chr4.2:19005361-19005380 None:intergenic 30.0%
! AATTGGTTGATATGCTCAAT+GGG - chr4.2:19006935-19006954 MS.gene36138:intron 30.0%
! TTGATTTTGCTTCTTAAGGA+GGG - chr4.2:19006603-19006622 MS.gene36138:intron 30.0%
! TTTTGAATACCTTCGATCTT+TGG + chr4.2:19005463-19005482 None:intergenic 30.0%
!! AGTTGTCTTTTGTTGACTAT+TGG - chr4.2:19006744-19006763 MS.gene36138:intron 30.0%
!! CAGTTTGATTTTGCTTCTTA+AGG - chr4.2:19006599-19006618 MS.gene36138:intron 30.0%
!! TTTGATTTTGCTTCTTAAGG+AGG - chr4.2:19006602-19006621 MS.gene36138:intron 30.0%
!!! AATTGTCCTTTGTTGACTTT+TGG - chr4.2:19006845-19006864 MS.gene36138:intron 30.0%
!!! ATTGATTTTTTCAGGGAGAA+TGG - chr4.2:19005717-19005736 MS.gene36138:CDS 30.0%
!!! CTTGTATTTTTTGAAAGGAC+TGG - chr4.2:19005546-19005565 MS.gene36138:CDS 30.0%
AAACAACGGAAATAGGTCAT+CGG + chr4.2:19005406-19005425 None:intergenic 35.0%
AAATTGAGTTCAATTCGACG+TGG - chr4.2:19005963-19005982 MS.gene36138:intron 35.0%
AAGAATGTCAAAACACCACT+GGG + chr4.2:19007022-19007041 None:intergenic 35.0%
ACAAAGAAAAGGATTACAGG+AGG - chr4.2:19007105-19007124 MS.gene36138:intron 35.0%
ACAACACTCTATAAGCAACA+AGG + chr4.2:19006397-19006416 None:intergenic 35.0%
ACACCATAATATAAGCTGTG+AGG + chr4.2:19006680-19006699 None:intergenic 35.0%
ACAGCTTATATTATGGTGTC+TGG - chr4.2:19006681-19006700 MS.gene36138:CDS 35.0%
ACATCACCATTTGAATTTCG+AGG + chr4.2:19007644-19007663 None:intergenic 35.0%
ACTGTCCAGTTTGCAAAATA+TGG - chr4.2:19005757-19005776 MS.gene36138:CDS 35.0%
ATCTACAAGCACGATTACAA+TGG + chr4.2:19006801-19006820 None:intergenic 35.0%
GTTGTTTGATAAGTATGGCA+AGG - chr4.2:19005419-19005438 MS.gene36138:CDS 35.0%
TCGTGATGACTACAAAGAAA+AGG - chr4.2:19007094-19007113 MS.gene36138:intron 35.0%
TTATGGCTGAAACCATTTCT+AGG - chr4.2:19006520-19006539 MS.gene36138:intron 35.0%
TTGAATACCTTCGATCTTTG+GGG + chr4.2:19005461-19005480 None:intergenic 35.0%
! AGGAAGAAAAACAGAGTGTT+AGG + chr4.2:19005370-19005389 None:intergenic 35.0%
! CAATTGGTTGATATGCTCAA+TGG - chr4.2:19006934-19006953 MS.gene36138:intron 35.0%
! GTTTAGGATATCTACAAGCA+TGG + chr4.2:19006709-19006728 None:intergenic 35.0%
! TGATTTTGCTTCTTAAGGAG+GGG - chr4.2:19006604-19006623 MS.gene36138:intron 35.0%
!! GTCTTTTGTTGACTATTGGT+AGG - chr4.2:19006748-19006767 MS.gene36138:intron 35.0%
!! TTATAGAGTGTTGTGGATGT+AGG - chr4.2:19006403-19006422 MS.gene36138:intron 35.0%
!! TTGTTGCTTATAGAGTGTTG+TGG - chr4.2:19006396-19006415 MS.gene36138:intron 35.0%
!!! GGGATCTTATGTGTTGATTT+TGG - chr4.2:19006955-19006974 MS.gene36138:intron 35.0%
AACAAGGAGAGAGTAGGTAT+CGG + chr4.2:19005272-19005291 None:intergenic 40.0%
ACAGAGAGAGAAGAGAGAAA+AGG + chr4.2:19005322-19005341 None:intergenic 40.0%
ACCATTTGAATTTCGAGGAG+AGG + chr4.2:19007639-19007658 None:intergenic 40.0%
ACTCTATAAGCAACAAGGAC+AGG + chr4.2:19006392-19006411 None:intergenic 40.0%
ACTTACATCCTCTCAGCATT+AGG + chr4.2:19005784-19005803 None:intergenic 40.0%
AGAGAAAAGGGTTTCGCTTA+CGG + chr4.2:19005309-19005328 None:intergenic 40.0%
AGCCTACCAAAAGTCAACAA+AGG + chr4.2:19006854-19006873 None:intergenic 40.0%
ATATGCTCCTCTTCAGAGAA+GGG + chr4.2:19007487-19007506 None:intergenic 40.0%
ATATGCTGATGAAGCTTCCA+AGG - chr4.2:19005602-19005621 MS.gene36138:CDS 40.0%
CAAGAATGTCAAAACACCAC+TGG + chr4.2:19007023-19007042 None:intergenic 40.0%
CAGAGAGAGAAGAGAGAAAA+GGG + chr4.2:19005321-19005340 None:intergenic 40.0%
CATTTGAATTTCGAGGAGAG+GGG + chr4.2:19007637-19007656 None:intergenic 40.0%
CCATTTGAATTTCGAGGAGA+GGG + chr4.2:19007638-19007657 None:intergenic 40.0%
CTTACATCCTCTCAGCATTA+GGG + chr4.2:19005783-19005802 None:intergenic 40.0%
TACGACTATCAGGACTTTCA+CGG + chr4.2:19007547-19007566 None:intergenic 40.0%
TCTTTATCCCCAAAGATCGA+AGG - chr4.2:19005451-19005470 MS.gene36138:CDS 40.0%
TGCATACTGATATTGGATGC+TGG - chr4.2:19006203-19006222 MS.gene36138:intron 40.0%
! TAGGGCCATATTTTGCAAAC+TGG + chr4.2:19005765-19005784 None:intergenic 40.0%
! TTGTGGATGTAGGAGAGTTT+TGG - chr4.2:19006413-19006432 MS.gene36138:intron 40.0%
!! AGAATTGAGCGGGTTACAAA+AGG + chr4.2:19007744-19007763 None:intergenic 40.0%
!! CACTCTGTTTTTCTTCCTCT+AGG - chr4.2:19005372-19005391 MS.gene36138:CDS 40.0%
!! TTTTCAGGGAGAATGGTTGA+TGG - chr4.2:19005724-19005743 MS.gene36138:CDS 40.0%
!!! GTCCTTTGTTGACTTTTGGT+AGG - chr4.2:19006849-19006868 MS.gene36138:intron 40.0%
AAAAGGGTTTCGCTTACGGA+AGG + chr4.2:19005305-19005324 None:intergenic 45.0%
AAGCTTCCAAGGCTGTTGAT+AGG - chr4.2:19005613-19005632 MS.gene36138:intron 45.0%
AATATGGCCCTAATGCTGAG+AGG - chr4.2:19005773-19005792 MS.gene36138:CDS 45.0%
AATTCACTTCTCGTACCCAG+TGG - chr4.2:19007004-19007023 MS.gene36138:intron 45.0%
AGCCATCTTCGCTATCAAAG+AGG - chr4.2:19007706-19007725 MS.gene36138:intron 45.0%
AGGGTTACTCAGTGTGTGTT+TGG + chr4.2:19006137-19006156 None:intergenic 45.0%
AGTGCTAGTCCTGGTTACAA+GGG - chr4.2:19007215-19007234 MS.gene36138:intron 45.0%
CCCTCTCCTCGAAATTCAAA+TGG - chr4.2:19007635-19007654 MS.gene36138:intron 45.0%
CTAAAAAGAGCCCTTCTCCA+AGG - chr4.2:19007420-19007439 MS.gene36138:CDS 45.0%
CTCCTTGAGCTCTTTGATCT+CGG + chr4.2:19006328-19006347 None:intergenic 45.0%
GATATGCTCCTCTTCAGAGA+AGG + chr4.2:19007488-19007507 None:intergenic 45.0%
GGAAGGTGATGTTGAGAACA+AGG + chr4.2:19005288-19005307 None:intergenic 45.0%
GTTGAGAACAAGGAGAGAGT+AGG + chr4.2:19005278-19005297 None:intergenic 45.0%
TACTACGACGCTCATCATCA+TGG + chr4.2:19007256-19007275 None:intergenic 45.0%
TAGTGCTAGTCCTGGTTACA+AGG - chr4.2:19007214-19007233 MS.gene36138:intron 45.0%
TCCTTGAGCTCTTTGATCTC+GGG + chr4.2:19006327-19006346 None:intergenic 45.0%
! CTTGGAGAAGGGCTCTTTTT+AGG + chr4.2:19007422-19007441 None:intergenic 45.0%
! TGTAACCAGGACTAGCACTA+CGG + chr4.2:19007214-19007233 None:intergenic 45.0%
!! TGCCTCTTTGATAGCGAAGA+TGG + chr4.2:19007711-19007730 None:intergenic 45.0%
!! TGGATGTAGGAGAGTTTTGG+TGG - chr4.2:19006416-19006435 MS.gene36138:intron 45.0%
!! ATTTCATTTATTTAAAAAAA+AGG - chr4.2:19005664-19005683 MS.gene36138:intron 5.0%
!! TTTCATTTATTTAAAAAAAA+GGG - chr4.2:19005665-19005684 MS.gene36138:intron 5.0%
AAAAGAGCCCTTCTCCAAGG+AGG - chr4.2:19007423-19007442 MS.gene36138:CDS 50.0%
AATAGAACTGCGTCGCACTG+GGG + chr4.2:19007399-19007418 None:intergenic 50.0%
ACCTGTCCACTGATCTGCTT+CGG + chr4.2:19007283-19007302 None:intergenic 50.0%
ATGAACGTGACAGACACCGT+GGG - chr4.2:19007156-19007175 MS.gene36138:intron 50.0%
ATGTCTCACTTCGGTAGGTC+AGG - chr4.2:19005232-19005251 MS.gene36138:intron 50.0%
CAACGGAAATAGGTCATCGG+CGG + chr4.2:19005403-19005422 None:intergenic 50.0%
CCTTGAGCTCTTTGATCTCG+GGG + chr4.2:19006326-19006345 None:intergenic 50.0%
CTATCAGGACTTTCACGGAG+TGG + chr4.2:19007542-19007561 None:intergenic 50.0%
GAATAGAACTGCGTCGCACT+GGG + chr4.2:19007400-19007419 None:intergenic 50.0%
GTCGCAGCAGGAGTTATGAT+AGG - chr4.2:19007132-19007151 MS.gene36138:intron 50.0%
TAGAAGCCGAAGCAGATCAG+TGG - chr4.2:19007274-19007293 MS.gene36138:intron 50.0%
TAGCACTACGGCTTCTGCTT+CGG + chr4.2:19007202-19007221 None:intergenic 50.0%
TGCACTCACCTTCTCTTGCT+GGG + chr4.2:19006358-19006377 None:intergenic 50.0%
TTCAGAGAAGGGCTCCTCTT+TGG + chr4.2:19007476-19007495 None:intergenic 50.0%
! AAGGCTGTTGATAGGCTCGA+CGG - chr4.2:19005621-19005640 MS.gene36138:intron 50.0%
! AAGGGCTCCTCTTTGGAGAT+GGG + chr4.2:19007469-19007488 None:intergenic 50.0%
! ATGGGCTCCTCTTTGGAGAA+GGG + chr4.2:19007451-19007470 None:intergenic 50.0%
! CCTGGGGGAAACACTCTTTT+GGG + chr4.2:19007513-19007532 None:intergenic 50.0%
! CTGGGGGAAACACTCTTTTG+GGG + chr4.2:19007512-19007531 None:intergenic 50.0%
! GAAAGGACTGGTGAATCGAG+AGG - chr4.2:19005558-19005577 MS.gene36138:CDS 50.0%
! TCCTGGGGGAAACACTCTTT+TGG + chr4.2:19007514-19007533 None:intergenic 50.0%
! TGGGGGAAACACTCTTTTGG+GGG + chr4.2:19007511-19007530 None:intergenic 50.0%
! TTTGGAGATGGGCTCCTCTT+TGG + chr4.2:19007458-19007477 None:intergenic 50.0%
!! GAGTAGGTATCGGAGATGTC+TGG + chr4.2:19005262-19005281 None:intergenic 50.0%
!! TAGGTATCGGAGATGTCTGG+AGG + chr4.2:19005259-19005278 None:intergenic 50.0%
!! TCACGGAGTGGACTTTTCCT+GGG + chr4.2:19007530-19007549 None:intergenic 50.0%
!! TTCACGGAGTGGACTTTTCC+TGG + chr4.2:19007531-19007550 None:intergenic 50.0%
AAGGGCTCCTCCTTGGAGAA+GGG + chr4.2:19007433-19007452 None:intergenic 55.0%
ACCTTCTCTTGCTGGGACTG+CGG + chr4.2:19006351-19006370 None:intergenic 55.0%
AGAAGCCGTAGTGCTAGTCC+TGG - chr4.2:19007206-19007225 MS.gene36138:intron 55.0%
AGAGGAGCCCATCTCCAAAG+AGG - chr4.2:19007459-19007478 MS.gene36138:intron 55.0%
AGTCCTGATAGTCGTAGCCG+TGG - chr4.2:19007551-19007570 MS.gene36138:CDS 55.0%
CATGAACGTGACAGACACCG+TGG - chr4.2:19007155-19007174 MS.gene36138:intron 55.0%
CCCCGAGATCAAAGAGCTCA+AGG - chr4.2:19006323-19006342 MS.gene36138:intron 55.0%
GCGTAAGAGACCTTCCACCA+CGG + chr4.2:19007571-19007590 None:intergenic 55.0%
GGAATAGAACTGCGTCGCAC+TGG + chr4.2:19007401-19007420 None:intergenic 55.0%
GTCGAGCCTATCAACAGCCT+TGG + chr4.2:19005622-19005641 None:intergenic 55.0%
GTGCACTCACCTTCTCTTGC+TGG + chr4.2:19006359-19006378 None:intergenic 55.0%
TGGTTACAAGGGCCGTGGAA+GGG - chr4.2:19007226-19007245 MS.gene36138:CDS 55.0%
TTTGGAGAAGGGCTCCTCCT+TGG + chr4.2:19007440-19007459 None:intergenic 55.0%
! AGAGGAGCCCTTCTCTGAAG+AGG - chr4.2:19007477-19007496 MS.gene36138:intron 55.0%
! ATAGTCGTAGCCGTGGTGGA+AGG - chr4.2:19007558-19007577 MS.gene36138:CDS 55.0%
! GAAGGGCTCCTCTTTGGAGA+TGG + chr4.2:19007470-19007489 None:intergenic 55.0%
! GATGGGCTCCTCTTTGGAGA+AGG + chr4.2:19007452-19007471 None:intergenic 55.0%
! GGGGGAAACACTCTTTTGGG+GGG + chr4.2:19007510-19007529 None:intergenic 55.0%
!! ACGGAGTGGACTTTTCCTGG+GGG + chr4.2:19007528-19007547 None:intergenic 55.0%
!! CACGGAGTGGACTTTTCCTG+GGG + chr4.2:19007529-19007548 None:intergenic 55.0%
!! CCCAAAAGAGTGTTTCCCCC+AGG - chr4.2:19007510-19007529 MS.gene36138:intron 55.0%
ACAGACACCGTGGGCGAGAT+AGG - chr4.2:19007165-19007184 MS.gene36138:intron 60.0%
ACAGGAGGAGAAGTCGCAGC+AGG - chr4.2:19007120-19007139 MS.gene36138:intron 60.0%
AGTCCTGGTTACAAGGGCCG+TGG - chr4.2:19007221-19007240 MS.gene36138:CDS 60.0%
CAGACACCGTGGGCGAGATA+GGG - chr4.2:19007166-19007185 MS.gene36138:intron 60.0%
CCACCACGGCTACGACTATC+AGG + chr4.2:19007557-19007576 None:intergenic 60.0%
CCTGATAGTCGTAGCCGTGG+TGG - chr4.2:19007554-19007573 MS.gene36138:CDS 60.0%
CGGAAATAGGTCATCGGCGG+TGG + chr4.2:19005400-19005419 None:intergenic 60.0%
CTGGTTACAAGGGCCGTGGA+AGG - chr4.2:19007225-19007244 MS.gene36138:CDS 60.0%
CTTCCACGGCCCTTGTAACC+AGG + chr4.2:19007227-19007246 None:intergenic 60.0%
GAAGGGCTCCTCCTTGGAGA+AGG + chr4.2:19007434-19007453 None:intergenic 60.0%
GATGGTCCCTATCTCGCCCA+CGG + chr4.2:19007175-19007194 None:intergenic 60.0%
GCCGAAGCAGATCAGTGGAC+AGG - chr4.2:19007279-19007298 MS.gene36138:intron 60.0%
GGAGGAGCCCTTCTCCAAAG+AGG - chr4.2:19007441-19007460 MS.gene36138:intron 60.0%
GGTTACAAGGGCCGTGGAAG+GGG - chr4.2:19007227-19007246 MS.gene36138:CDS 60.0%
GTTACAAGGGCCGTGGAAGG+GGG - chr4.2:19007228-19007247 MS.gene36138:CDS 60.0%
AACTGCGTCGCACTGGGGAG+CGG + chr4.2:19007394-19007413 None:intergenic 65.0%
CATCATGGCGCCCCCTTCCA+CGG + chr4.2:19007241-19007260 None:intergenic 65.0%
CCTCGCAGTGTCTCACCACG+AGG - chr4.2:19007590-19007609 MS.gene36138:CDS 65.0%
CCTCGTGGTGAGACACTGCG+AGG + chr4.2:19007593-19007612 None:intergenic 65.0%
GCCGCAGTCCCAGCAAGAGA+AGG - chr4.2:19006347-19006366 MS.gene36138:intron 65.0%
GGCTTCTGCTTCGGCGACGA+TGG + chr4.2:19007193-19007212 None:intergenic 65.0%
GTCTCACCACGAGGTCGTCC+TGG - chr4.2:19007599-19007618 MS.gene36138:CDS 65.0%
TCATCGGCGGTGGTGCCTAG+AGG + chr4.2:19005390-19005409 None:intergenic 65.0%
! GAAGCACCAGGACGACCTCG+TGG + chr4.2:19007608-19007627 None:intergenic 65.0%
!! GAGGGGCTTCGAGAAGCACC+AGG + chr4.2:19007620-19007639 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 19005232 19007783 19005232 ID=MS.gene36138
chr4.2 mRNA 19005232 19007783 19005232 ID=MS.gene36138.t1;Parent=MS.gene36138
chr4.2 exon 19007708 19007783 19007708 ID=MS.gene36138.t1.exon1;Parent=MS.gene36138.t1
chr4.2 CDS 19007708 19007783 19007708 ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1
chr4.2 exon 19007543 19007621 19007543 ID=MS.gene36138.t1.exon2;Parent=MS.gene36138.t1
chr4.2 CDS 19007543 19007621 19007543 ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1
chr4.2 exon 19007373 19007452 19007373 ID=MS.gene36138.t1.exon3;Parent=MS.gene36138.t1
chr4.2 CDS 19007373 19007452 19007373 ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1
chr4.2 exon 19007218 19007284 19007218 ID=MS.gene36138.t1.exon4;Parent=MS.gene36138.t1
chr4.2 CDS 19007218 19007284 19007218 ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1
chr4.2 exon 19006647 19006718 19006647 ID=MS.gene36138.t1.exon5;Parent=MS.gene36138.t1
chr4.2 CDS 19006647 19006718 19006647 ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1
chr4.2 exon 19005715 19005924 19005715 ID=MS.gene36138.t1.exon6;Parent=MS.gene36138.t1
chr4.2 CDS 19005715 19005924 19005715 ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1
chr4.2 exon 19005354 19005624 19005354 ID=MS.gene36138.t1.exon7;Parent=MS.gene36138.t1
chr4.2 CDS 19005354 19005624 19005354 ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1
chr4.2 exon 19005232 19005237 19005232 ID=MS.gene36138.t1.exon8;Parent=MS.gene36138.t1
chr4.2 CDS 19005232 19005237 19005232 ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1
Gene Sequence

>MS.gene36138

ATGTCTCACTTCGGTAGGTCAGGTCCTCCAGACATCTCCGATACCTACTCTCTCCTTGTTCTCAACATCACCTTCCGTAAGCGAAACCCTTTTCTCTCTTCTCTCTCTGTTTTCTCTTATCTTTAACCTAATTAACCTAACACTCTGTTTTTCTTCCTCTAGGCACCACCGCCGATGACCTATTTCCGTTGTTTGATAAGTATGGCAAGGTTGTTGACATCTTTATCCCCAAAGATCGAAGGTATTCAAAAAGTTTTATTTTTTCAATTTCCCCCAATTTTTCTTTTATCAAATTATTTATTTATTGAATTTTTCTTGTATTTTTTGAAAGGACTGGTGAATCGAGAGGTTTCGCTTTTGTGCGTTACAAATATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGTATATGCTTCTTGTTAATTCATTTCATTTATTTAAAAAAAAGGGTTTTTTTTTGTATGAATTTAAAAGAAACGATTGATTTTTTCAGGGAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGCCCTAATGCTGAGAGGATGTAAGTTTTATTCTTATTTTTCATTTTTGTTATGATGGTGCTGTTATTGTTATGTCAAATTAAAAATTTACCTTGATTTTCTATATCATGATGTTTATATAACGAGGTAAAACTAAGTGTGTGTTTGTTCATAAAAATTGATTTTGAATGAATTGATTTTAGTTAAAATTGAGTTCAATTCGACGTGGTTTATGTTTGAGTTAAACAGTAAATTTGAGTGTAAAAATTGTGGTTTGAGTCTAAAGCTACAAACACTAGCTTCAAGTTTGAATGAAATGTAGAGGCAAAGTCAGTTTTACAACTCTACAATCAATTTTATCTTATTGTTAATTGAAACCAAACACACACTGAGTAACCCTGTCGAATAGATTTAGTTTGAGTTTGAATACAATAGCCTTATTCAGTTGCATACTGATATTGGATGCTGGTTAATATTTTTCTAATTGATTTTTTTTTTTGTACAATTGTATGTAGCTAAGTTTATTTATTTTATTTACAGTCAGAAAGGAAGGATTATCGAAACATCCCCGAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAAGAGAAGGTGAGTGCACTTTTTAATGTCCTGTCCTTGTTGCTTATAGAGTGTTGTGGATGTAGGAGAGTTTTGGTGGCTGCTATTTTGTGATGAGTGATGTTTCAACTACATGCGATTCTTGTTTTTTGTTTTCAATGTTCAGAGTGATCATTGAATTTTATGGCTGAAACCATTTCTAGGATTTTCAATGATACAGTTGATGCATTTATATGATGCTCAATCAAACTTGTATCTTGCAGTTTGATTTTGCTTCTTAAGGAGGGGATAATGTGACCTCTTAAATTTAAGCATGTTAATTTGTCTAATCAGTAAAACCTCACAGCTTATATTATGGTGTCTGGCGCCATGCTTGTAGATATCCTAAACTGTACTTCTAATTGAAGTTGTCTTTTGTTGACTATTGGTAGGCTCTTTGAATGTCTTCTTTCATATCTTCCATTGTAATCGTGCTTGTAGATATCCGAAACTGTACTTCTAATTGAAATTGTCCTTTGTTGACTTTTGGTAGGCTCTGTGAATGTCTTCTTTCATATCTGCCATTGTAATGTACAGTAGTAAACATTCCAATTATCAATTGGTTGATATGCTCAATGGGATCTTATGTGTTGATTTTGGTATTTTCTTATGTTAATACTTATTAAAATTCACTTCTCGTACCCAGTGGTGTTTTGACATTCTTGATTGACTTCGATAGAAATTTGTATTGACTAATGTCTAATTGTTTGTAGGCATCGTGATGACTACAAAGAAAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGCATGAACGTGACAGACACCGTGGGCGAGATAGGGACCATCGTCGCCGAAGCAGAAGCCGTAGTGCTAGTCCTGGTTACAAGGGCCGTGGAAGGGGGCGCCATGATGATGAGCGTCGTAGTAGAAGCCGAAGCAGATCAGTGGACAGGTCTTCATTCATTGACACTTGAGCTTTTCAGCTGTGATTTTTCACCACCATAATTATTGTTATTTGAGCCTTTTTTGTTATTCTTCACAGCCGCTCCCCAGTGCGACGCAGTTCTATTCCTAAAAAGAGCCCTTCTCCAAGGAGGAGCCCTTCTCCAAAGAGGAGCCCATCTCCAAAGAGGAGCCCTTCTCTGAAGAGGAGCATATCCCCCCAAAAGAGTGTTTCCCCCAGGAAAAGTCCACTCCGTGAAAGTCCTGATAGTCGTAGCCGTGGTGGAAGGTCTCTTACGCCTCGCAGTGTCTCACCACGAGGTCGTCCTGGTGCTTCTCGAAGCCCCTCTCCTCGAAATTCAAATGGTGATGTAAGTAAAGCAATGTTATTCTTGAACTTAATAATGGATCAAAAAGCCATCTTCGCTATCAAAGAGGCATTTTTTTTAACCTTTTGTAACCCGCTCAATTCTATTTACATTTGCAGGAATAA

Protein sequence

>MS.gene36138.t1

MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSKRRHRDDYKEKDYRRRSRSRSYDRHERDRHRGRDRDHRRRSRSRSASPGYKGRGRGRHDDERRSRSRSRSVDSRSPVRRSSIPKKSPSPRRSPSPKRSPSPKRSPSLKRSISPQKSVSPRKSPLRESPDSRSRGGRSLTPRSVSPRGRPGASRSPSPRNSNGDE