Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36138.t1 | CAA76346.1 | 100 | 113 | 0 | 0 | 1 | 113 | 1 | 113 | 2.90E-57 | 232.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36138.t1 | Q9FMG4 | 85.8 | 113 | 16 | 0 | 1 | 113 | 1 | 113 | 6.3e-53 | 209.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36138.t1 | B7FKH5 | 100.0 | 113 | 0 | 0 | 1 | 113 | 1 | 113 | 2.1e-57 | 232.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene026372 | MS.gene36138 | PPI |
MS.gene36138 | MS.gene90884 | PPI |
MS.gene74239 | MS.gene36138 | PPI |
MS.gene011973 | MS.gene36138 | PPI |
MS.gene061098 | MS.gene36138 | PPI |
MS.gene061705 | MS.gene36138 | PPI |
MS.gene046159 | MS.gene36138 | PPI |
MS.gene36138 | MS.gene90116 | PPI |
MS.gene040807 | MS.gene36138 | PPI |
MS.gene36138 | MS.gene047872 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36138.t1 | MTR_4g094235 | 97.203 | 286 | 2 | 1 | 1 | 286 | 1 | 280 | 0.0 | 516 |
MS.gene36138.t1 | MTR_4g094235 | 96.864 | 287 | 2 | 2 | 1 | 286 | 1 | 281 | 0.0 | 512 |
MS.gene36138.t1 | MTR_5g070450 | 77.003 | 287 | 45 | 2 | 1 | 286 | 1 | 267 | 3.22e-90 | 269 |
MS.gene36138.t1 | MTR_4g118630 | 38.961 | 77 | 47 | 0 | 17 | 93 | 49 | 125 | 2.18e-14 | 72.4 |
MS.gene36138.t1 | MTR_3g083550 | 41.558 | 77 | 45 | 0 | 17 | 93 | 42 | 118 | 1.26e-13 | 69.3 |
MS.gene36138.t1 | MTR_5g079870 | 43.750 | 80 | 45 | 0 | 13 | 92 | 44 | 123 | 2.26e-13 | 69.3 |
MS.gene36138.t1 | MTR_1g054675 | 41.558 | 77 | 45 | 0 | 17 | 93 | 44 | 120 | 2.48e-13 | 68.2 |
MS.gene36138.t1 | MTR_3g025880 | 43.421 | 76 | 43 | 0 | 18 | 93 | 46 | 121 | 5.21e-13 | 68.9 |
MS.gene36138.t1 | MTR_5g070100 | 42.105 | 76 | 44 | 0 | 14 | 89 | 34 | 109 | 2.05e-12 | 67.0 |
MS.gene36138.t1 | MTR_6g477870 | 39.474 | 76 | 46 | 0 | 18 | 93 | 97 | 172 | 1.28e-11 | 62.8 |
MS.gene36138.t1 | MTR_7g106440 | 40.909 | 88 | 52 | 0 | 18 | 105 | 111 | 198 | 4.67e-11 | 62.8 |
MS.gene36138.t1 | MTR_5g023060 | 38.961 | 77 | 47 | 0 | 17 | 93 | 132 | 208 | 7.59e-11 | 62.0 |
MS.gene36138.t1 | MTR_4g109540 | 37.975 | 79 | 49 | 0 | 15 | 93 | 41 | 119 | 7.61e-11 | 61.6 |
MS.gene36138.t1 | MTR_4g081520 | 35.065 | 77 | 50 | 0 | 17 | 93 | 52 | 128 | 7.81e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36138.t1 | AT5G64200 | 58.824 | 306 | 92 | 7 | 1 | 279 | 1 | 299 | 1.56e-75 | 233 |
MS.gene36138.t1 | AT5G64200 | 58.824 | 306 | 92 | 7 | 1 | 279 | 1 | 299 | 1.56e-75 | 233 |
MS.gene36138.t1 | AT5G18810 | 39.474 | 76 | 46 | 0 | 18 | 93 | 49 | 124 | 1.33e-15 | 74.7 |
MS.gene36138.t1 | AT5G18810 | 39.474 | 76 | 46 | 0 | 18 | 93 | 49 | 124 | 1.35e-15 | 74.7 |
MS.gene36138.t1 | AT1G55310 | 41.558 | 77 | 45 | 0 | 17 | 93 | 37 | 113 | 3.74e-14 | 71.6 |
MS.gene36138.t1 | AT1G55310 | 41.558 | 77 | 45 | 0 | 17 | 93 | 37 | 113 | 4.29e-14 | 70.5 |
MS.gene36138.t1 | AT1G55310 | 41.558 | 77 | 45 | 0 | 17 | 93 | 37 | 113 | 4.29e-14 | 70.5 |
MS.gene36138.t1 | AT3G10400 | 37.778 | 90 | 56 | 0 | 17 | 106 | 58 | 147 | 2.16e-12 | 66.2 |
MS.gene36138.t1 | AT3G47120 | 41.667 | 72 | 42 | 0 | 18 | 89 | 38 | 109 | 4.22e-12 | 66.2 |
MS.gene36138.t1 | AT3G47120 | 41.667 | 72 | 42 | 0 | 18 | 89 | 38 | 109 | 4.70e-12 | 65.5 |
MS.gene36138.t1 | AT5G03580 | 39.189 | 74 | 44 | 1 | 17 | 90 | 18 | 90 | 6.73e-12 | 61.2 |
MS.gene36138.t1 | AT5G06210 | 40.789 | 76 | 45 | 0 | 18 | 93 | 36 | 111 | 1.33e-11 | 61.6 |
MS.gene36138.t1 | AT5G54580 | 35.065 | 77 | 50 | 0 | 17 | 93 | 57 | 133 | 3.46e-11 | 60.8 |
MS.gene36138.t1 | AT1G73530 | 38.158 | 76 | 47 | 0 | 18 | 93 | 79 | 154 | 4.55e-11 | 61.2 |
Find 99 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCGTTGTTTGATAAGTA+TGG | 0.248443 | 4.2:-19007579 | MS.gene36138:CDS |
TTTGGAGATGGGCTCCTCTT+TGG | 0.256933 | 4.2:+19005538 | None:intergenic |
TTTGAATACCTTCGATCTTT+GGG | 0.287302 | 4.2:+19007534 | None:intergenic |
ACTTACATCCTCTCAGCATT+AGG | 0.296368 | 4.2:+19007212 | None:intergenic |
ACTTATCAAACAACGGAAAT+AGG | 0.314806 | 4.2:+19007583 | None:intergenic |
ACTGTCCAGTTTGCAAAATA+TGG | 0.319049 | 4.2:-19007236 | MS.gene36138:CDS |
TCCTTGAGCTCTTTGATCTC+GGG | 0.321129 | 4.2:+19006669 | None:intergenic |
CTCCTTGAGCTCTTTGATCT+CGG | 0.321782 | 4.2:+19006668 | None:intergenic |
TTCAGAGAAGGGCTCCTCTT+TGG | 0.328760 | 4.2:+19005520 | None:intergenic |
CCACCACGGCTACGACTATC+AGG | 0.357715 | 4.2:+19005439 | None:intergenic |
GGTTACAAGGGCCGTGGAAG+GGG | 0.372918 | 4.2:-19005766 | MS.gene36138:CDS |
ACAGACACCGTGGGCGAGAT+AGG | 0.379124 | 4.2:-19005828 | MS.gene36138:CDS |
GTGCACTCACCTTCTCTTGC+TGG | 0.388981 | 4.2:+19006637 | None:intergenic |
ACTACAAAGAAAAGGATTAC+AGG | 0.405827 | 4.2:-19005891 | MS.gene36138:CDS |
TTTGGAGAAGGGCTCCTCCT+TGG | 0.415577 | 4.2:+19005556 | None:intergenic |
CTTACATCCTCTCAGCATTA+GGG | 0.418601 | 4.2:+19007213 | None:intergenic |
GGAATAGAACTGCGTCGCAC+TGG | 0.428015 | 4.2:+19005595 | None:intergenic |
GAGTAGGTATCGGAGATGTC+TGG | 0.437496 | 4.2:+19007734 | None:intergenic |
ACCTGTCCACTGATCTGCTT+CGG | 0.440722 | 4.2:+19005713 | None:intergenic |
CCCTCTCCTCGAAATTCAAA+TGG | 0.450770 | 4.2:-19005358 | MS.gene36138:CDS |
TGGTTACAAGGGCCGTGGAA+GGG | 0.452023 | 4.2:-19005767 | MS.gene36138:CDS |
CCATTTGAATTTCGAGGAGA+GGG | 0.467296 | 4.2:+19005358 | None:intergenic |
ACATCACCATTTGAATTTCG+AGG | 0.468064 | 4.2:+19005352 | None:intergenic |
GTCTCACCACGAGGTCGTCC+TGG | 0.468843 | 4.2:-19005394 | MS.gene36138:CDS |
ATGTCTCACTTCGGTAGGTC+AGG | 0.470526 | 4.2:-19007761 | MS.gene36138:CDS |
GATGGGCTCCTCTTTGGAGA+AGG | 0.471297 | 4.2:+19005544 | None:intergenic |
AAGCTTCCAAGGCTGTTGAT+AGG | 0.471644 | 4.2:-19007380 | MS.gene36138:CDS |
GAAGGGCTCCTCTTTGGAGA+TGG | 0.483384 | 4.2:+19005526 | None:intergenic |
CTGGTTACAAGGGCCGTGGA+AGG | 0.484019 | 4.2:-19005768 | MS.gene36138:CDS |
GAATAGAACTGCGTCGCACT+GGG | 0.488305 | 4.2:+19005596 | None:intergenic |
CTTCCACGGCCCTTGTAACC+AGG | 0.492291 | 4.2:+19005769 | None:intergenic |
TAGTGCTAGTCCTGGTTACA+AGG | 0.492924 | 4.2:-19005779 | MS.gene36138:CDS |
GAAGGGCTCCTCCTTGGAGA+AGG | 0.499345 | 4.2:+19005562 | None:intergenic |
GTTACAAGGGCCGTGGAAGG+GGG | 0.499632 | 4.2:-19005765 | MS.gene36138:CDS |
GGCTTCTGCTTCGGCGACGA+TGG | 0.500908 | 4.2:+19005803 | None:intergenic |
GTCGAGCCTATCAACAGCCT+TGG | 0.507162 | 4.2:+19007374 | None:intergenic |
CGGAAATAGGTCATCGGCGG+TGG | 0.508213 | 4.2:+19007596 | None:intergenic |
GTCGCAGCAGGAGTTATGAT+AGG | 0.511200 | 4.2:-19005861 | MS.gene36138:CDS |
ATGGGCTCCTCTTTGGAGAA+GGG | 0.516159 | 4.2:+19005545 | None:intergenic |
TCGTGATGACTACAAAGAAA+AGG | 0.517915 | 4.2:-19005899 | MS.gene36138:CDS |
TAGCACTACGGCTTCTGCTT+CGG | 0.518667 | 4.2:+19005794 | None:intergenic |
AACTGCGTCGCACTGGGGAG+CGG | 0.520493 | 4.2:+19005602 | None:intergenic |
AAGGGCTCCTCTTTGGAGAT+GGG | 0.523115 | 4.2:+19005527 | None:intergenic |
GCCGAAGCAGATCAGTGGAC+AGG | 0.523668 | 4.2:-19005714 | MS.gene36138:intron |
TGCACTCACCTTCTCTTGCT+GGG | 0.524949 | 4.2:+19006638 | None:intergenic |
ACAGGAGGAGAAGTCGCAGC+AGG | 0.531528 | 4.2:-19005873 | MS.gene36138:CDS |
TTATTTACAGTCAGAAAGGA+AGG | 0.534511 | 4.2:-19006706 | MS.gene36138:intron |
GTTGAGAACAAGGAGAGAGT+AGG | 0.544195 | 4.2:+19007718 | None:intergenic |
GCCGCAGTCCCAGCAAGAGA+AGG | 0.547662 | 4.2:-19006646 | MS.gene36138:intron |
TACGACTATCAGGACTTTCA+CGG | 0.548540 | 4.2:+19005449 | None:intergenic |
CCTTGAGCTCTTTGATCTCG+GGG | 0.548590 | 4.2:+19006670 | None:intergenic |
CAGACACCGTGGGCGAGATA+GGG | 0.549814 | 4.2:-19005827 | MS.gene36138:CDS |
AGTCCTGGTTACAAGGGCCG+TGG | 0.550812 | 4.2:-19005772 | MS.gene36138:CDS |
ATATGCTGATGAAGCTTCCA+AGG | 0.553657 | 4.2:-19007391 | MS.gene36138:CDS |
TTGAATACCTTCGATCTTTG+GGG | 0.554262 | 4.2:+19007535 | None:intergenic |
GAGGGGCTTCGAGAAGCACC+AGG | 0.555902 | 4.2:+19005376 | None:intergenic |
TACTACGACGCTCATCATCA+TGG | 0.556930 | 4.2:+19005740 | None:intergenic |
AACAAGGAGAGAGTAGGTAT+CGG | 0.558892 | 4.2:+19007724 | None:intergenic |
ACCATTTGAATTTCGAGGAG+AGG | 0.563905 | 4.2:+19005357 | None:intergenic |
ATAGTCGTAGCCGTGGTGGA+AGG | 0.568556 | 4.2:-19005435 | MS.gene36138:CDS |
GTTGTTTGATAAGTATGGCA+AGG | 0.571156 | 4.2:-19007574 | MS.gene36138:CDS |
ACCTTCTCTTGCTGGGACTG+CGG | 0.574400 | 4.2:+19006645 | None:intergenic |
AAGGGCTCCTCCTTGGAGAA+GGG | 0.574735 | 4.2:+19005563 | None:intergenic |
AGAGGAGCCCTTCTCTGAAG+AGG | 0.576065 | 4.2:-19005516 | MS.gene36138:CDS |
GATATGCTCCTCTTCAGAGA+AGG | 0.584099 | 4.2:+19005508 | None:intergenic |
AGAAGCCGTAGTGCTAGTCC+TGG | 0.586089 | 4.2:-19005787 | MS.gene36138:CDS |
TAGAAGCCGAAGCAGATCAG+TGG | 0.590371 | 4.2:-19005719 | MS.gene36138:CDS |
CAACCATGTCTCACTTCGGT+AGG | 0.602311 | 4.2:-19007766 | None:intergenic |
GAAAGGACTGGTGAATCGAG+AGG | 0.603562 | 4.2:-19007435 | MS.gene36138:intron |
ATATGCTCCTCTTCAGAGAA+GGG | 0.603871 | 4.2:+19005509 | None:intergenic |
CCCCGAGATCAAAGAGCTCA+AGG | 0.604164 | 4.2:-19006670 | MS.gene36138:CDS |
CATTTGAATTTCGAGGAGAG+GGG | 0.610211 | 4.2:+19005359 | None:intergenic |
GGAAGGTGATGTTGAGAACA+AGG | 0.616882 | 4.2:+19007708 | None:intergenic |
AAATCAACCATGTCTCACTT+CGG | 0.630425 | 4.2:-19007770 | None:intergenic |
TTGCCATACTTATCAAACAA+CGG | 0.633797 | 4.2:+19007576 | None:intergenic |
AAACAACGGAAATAGGTCAT+CGG | 0.637663 | 4.2:+19007590 | None:intergenic |
TCTTTATCCCCAAAGATCGA+AGG | 0.640188 | 4.2:-19007542 | MS.gene36138:intron |
GGAGGAGCCCTTCTCCAAAG+AGG | 0.643213 | 4.2:-19005552 | MS.gene36138:CDS |
TGTAACCAGGACTAGCACTA+CGG | 0.646574 | 4.2:+19005782 | None:intergenic |
AAGGCTGTTGATAGGCTCGA+CGG | 0.648087 | 4.2:-19007372 | MS.gene36138:intron |
GATGGTCCCTATCTCGCCCA+CGG | 0.651462 | 4.2:+19005821 | None:intergenic |
AGAGGAGCCCATCTCCAAAG+AGG | 0.655051 | 4.2:-19005534 | MS.gene36138:CDS |
AGTCCTGATAGTCGTAGCCG+TGG | 0.655730 | 4.2:-19005442 | MS.gene36138:CDS |
CCTGATAGTCGTAGCCGTGG+TGG | 0.655888 | 4.2:-19005439 | MS.gene36138:CDS |
TGACCTACCGAAGTGAGACA+TGG | 0.657356 | 4.2:+19007763 | None:intergenic |
GCGTAAGAGACCTTCCACCA+CGG | 0.658460 | 4.2:+19005425 | None:intergenic |
ACAAAGAAAAGGATTACAGG+AGG | 0.659007 | 4.2:-19005888 | MS.gene36138:CDS |
CTATCAGGACTTTCACGGAG+TGG | 0.659967 | 4.2:+19005454 | None:intergenic |
AGTGCTAGTCCTGGTTACAA+GGG | 0.676008 | 4.2:-19005778 | MS.gene36138:CDS |
AAAAGAGCCCTTCTCCAAGG+AGG | 0.680058 | 4.2:-19005570 | MS.gene36138:CDS |
ATGAACGTGACAGACACCGT+GGG | 0.686183 | 4.2:-19005837 | MS.gene36138:CDS |
TAGGTATCGGAGATGTCTGG+AGG | 0.687472 | 4.2:+19007737 | None:intergenic |
GAAGCACCAGGACGACCTCG+TGG | 0.693031 | 4.2:+19005388 | None:intergenic |
CATGAACGTGACAGACACCG+TGG | 0.693971 | 4.2:-19005838 | MS.gene36138:CDS |
CCTCGCAGTGTCTCACCACG+AGG | 0.694942 | 4.2:-19005403 | MS.gene36138:CDS |
AATAGAACTGCGTCGCACTG+GGG | 0.699899 | 4.2:+19005597 | None:intergenic |
CAACGGAAATAGGTCATCGG+CGG | 0.703502 | 4.2:+19007593 | None:intergenic |
CCTCGTGGTGAGACACTGCG+AGG | 0.721185 | 4.2:+19005403 | None:intergenic |
AATATGGCCCTAATGCTGAG+AGG | 0.735571 | 4.2:-19007220 | MS.gene36138:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTGATAAAAGAAAAATT+GGG | + | chr4.2:19005507-19005526 | None:intergenic | 10.0% |
!! | TAATTTGATAAAAGAAAAAT+TGG | + | chr4.2:19005508-19005527 | None:intergenic | 10.0% |
!! | ATTTGATAAAAGAAAAATTG+GGG | + | chr4.2:19005506-19005525 | None:intergenic | 15.0% |
!!! | ATTTTTCATTTTTGTTATGA+TGG | - | chr4.2:19005813-19005832 | MS.gene36138:CDS | 15.0% |
!!! | TTTTTCTTGTATTTTTTGAA+AGG | - | chr4.2:19005541-19005560 | MS.gene36138:CDS | 15.0% |
!! | AAATTTGAGTGTAAAAATTG+TGG | - | chr4.2:19006007-19006026 | MS.gene36138:intron | 20.0% |
!! | GTTATTCTTGAACTTAATAA+TGG | - | chr4.2:19007676-19007695 | MS.gene36138:intron | 20.0% |
!! | TAAACATTCCAATTATCAAT+TGG | - | chr4.2:19006918-19006937 | MS.gene36138:intron | 20.0% |
!! | TCAAATAACAATAATTATGG+TGG | + | chr4.2:19007348-19007367 | None:intergenic | 20.0% |
!! | TTAACATGCTTAAATTTAAG+AGG | + | chr4.2:19006639-19006658 | None:intergenic | 20.0% |
!! | TTTGATAAAAGAAAAATTGG+GGG | + | chr4.2:19005505-19005524 | None:intergenic | 20.0% |
!!! | TATTTTATTTACAGTCAGAA+AGG | - | chr4.2:19006283-19006302 | MS.gene36138:intron | 20.0% |
! | AAATGTAAATAGAATTGAGC+GGG | + | chr4.2:19007754-19007773 | None:intergenic | 25.0% |
! | ACTAATGTCTAATTGTTTGT+AGG | - | chr4.2:19007069-19007088 | MS.gene36138:intron | 25.0% |
! | ATCATGATGTTTATATAACG+AGG | - | chr4.2:19005882-19005901 | MS.gene36138:CDS | 25.0% |
! | ATCATTGAAAATCCTAGAAA+TGG | + | chr4.2:19006535-19006554 | None:intergenic | 25.0% |
! | CAAATGTAAATAGAATTGAG+CGG | + | chr4.2:19007755-19007774 | None:intergenic | 25.0% |
! | CATCATGATATAGAAAATCA+AGG | + | chr4.2:19005871-19005890 | None:intergenic | 25.0% |
! | GGCTCAAATAACAATAATTA+TGG | + | chr4.2:19007351-19007370 | None:intergenic | 25.0% |
! | TCAATTCTATTTACATTTGC+AGG | - | chr4.2:19007756-19007775 | MS.gene36138:CDS | 25.0% |
! | TTTACTACTGTACATTACAA+TGG | + | chr4.2:19006902-19006921 | None:intergenic | 25.0% |
!! | AGAGTGATCATTGAATTTTA+TGG | - | chr4.2:19006503-19006522 | MS.gene36138:intron | 25.0% |
!! | CATATCAACCAATTGATAAT+TGG | + | chr4.2:19006929-19006948 | None:intergenic | 25.0% |
!! | TTCAATTAGAAGTACAGTTT+AGG | + | chr4.2:19006725-19006744 | None:intergenic | 25.0% |
!! | TTCAATTAGAAGTACAGTTT+CGG | + | chr4.2:19006725-19006744 | None:intergenic | 25.0% |
!!! | AAGAAACGATTGATTTTTTC+AGG | - | chr4.2:19005709-19005728 | MS.gene36138:intron | 25.0% |
!!! | AGAAACGATTGATTTTTTCA+GGG | - | chr4.2:19005710-19005729 | MS.gene36138:intron | 25.0% |
AAACCTCACAGCTTATATTA+TGG | - | chr4.2:19006674-19006693 | MS.gene36138:CDS | 30.0% | |
ACTACAAAGAAAAGGATTAC+AGG | - | chr4.2:19007102-19007121 | MS.gene36138:intron | 30.0% | |
ACTTATCAAACAACGGAAAT+AGG | + | chr4.2:19005413-19005432 | None:intergenic | 30.0% | |
ATTCAGTTGCATACTGATAT+TGG | - | chr4.2:19006196-19006215 | MS.gene36138:intron | 30.0% | |
CAAACTAAATCTATTCGACA+GGG | + | chr4.2:19006156-19006175 | None:intergenic | 30.0% | |
CAAGTTTGAATGAAATGTAG+AGG | - | chr4.2:19006059-19006078 | MS.gene36138:intron | 30.0% | |
GCTGTGAAGAATAACAAAAA+AGG | + | chr4.2:19007372-19007391 | None:intergenic | 30.0% | |
TATCAGTATGCAACTGAATA+AGG | + | chr4.2:19006195-19006214 | None:intergenic | 30.0% | |
TCAAACTAAATCTATTCGAC+AGG | + | chr4.2:19006157-19006176 | None:intergenic | 30.0% | |
TTATTTACAGTCAGAAAGGA+AGG | - | chr4.2:19006287-19006306 | MS.gene36138:intron | 30.0% | |
TTGCCATACTTATCAAACAA+CGG | + | chr4.2:19005420-19005439 | None:intergenic | 30.0% | |
TTTCCGTTGTTTGATAAGTA+TGG | - | chr4.2:19005414-19005433 | MS.gene36138:CDS | 30.0% | |
TTTGAATACCTTCGATCTTT+GGG | + | chr4.2:19005462-19005481 | None:intergenic | 30.0% | |
! | AACAGAGTGTTAGGTTAATT+AGG | + | chr4.2:19005361-19005380 | None:intergenic | 30.0% |
! | AATTGGTTGATATGCTCAAT+GGG | - | chr4.2:19006935-19006954 | MS.gene36138:intron | 30.0% |
! | TTGATTTTGCTTCTTAAGGA+GGG | - | chr4.2:19006603-19006622 | MS.gene36138:intron | 30.0% |
! | TTTTGAATACCTTCGATCTT+TGG | + | chr4.2:19005463-19005482 | None:intergenic | 30.0% |
!! | AGTTGTCTTTTGTTGACTAT+TGG | - | chr4.2:19006744-19006763 | MS.gene36138:intron | 30.0% |
!! | CAGTTTGATTTTGCTTCTTA+AGG | - | chr4.2:19006599-19006618 | MS.gene36138:intron | 30.0% |
!! | TTTGATTTTGCTTCTTAAGG+AGG | - | chr4.2:19006602-19006621 | MS.gene36138:intron | 30.0% |
!!! | AATTGTCCTTTGTTGACTTT+TGG | - | chr4.2:19006845-19006864 | MS.gene36138:intron | 30.0% |
!!! | ATTGATTTTTTCAGGGAGAA+TGG | - | chr4.2:19005717-19005736 | MS.gene36138:CDS | 30.0% |
!!! | CTTGTATTTTTTGAAAGGAC+TGG | - | chr4.2:19005546-19005565 | MS.gene36138:CDS | 30.0% |
AAACAACGGAAATAGGTCAT+CGG | + | chr4.2:19005406-19005425 | None:intergenic | 35.0% | |
AAATTGAGTTCAATTCGACG+TGG | - | chr4.2:19005963-19005982 | MS.gene36138:intron | 35.0% | |
AAGAATGTCAAAACACCACT+GGG | + | chr4.2:19007022-19007041 | None:intergenic | 35.0% | |
ACAAAGAAAAGGATTACAGG+AGG | - | chr4.2:19007105-19007124 | MS.gene36138:intron | 35.0% | |
ACAACACTCTATAAGCAACA+AGG | + | chr4.2:19006397-19006416 | None:intergenic | 35.0% | |
ACACCATAATATAAGCTGTG+AGG | + | chr4.2:19006680-19006699 | None:intergenic | 35.0% | |
ACAGCTTATATTATGGTGTC+TGG | - | chr4.2:19006681-19006700 | MS.gene36138:CDS | 35.0% | |
ACATCACCATTTGAATTTCG+AGG | + | chr4.2:19007644-19007663 | None:intergenic | 35.0% | |
ACTGTCCAGTTTGCAAAATA+TGG | - | chr4.2:19005757-19005776 | MS.gene36138:CDS | 35.0% | |
ATCTACAAGCACGATTACAA+TGG | + | chr4.2:19006801-19006820 | None:intergenic | 35.0% | |
GTTGTTTGATAAGTATGGCA+AGG | - | chr4.2:19005419-19005438 | MS.gene36138:CDS | 35.0% | |
TCGTGATGACTACAAAGAAA+AGG | - | chr4.2:19007094-19007113 | MS.gene36138:intron | 35.0% | |
TTATGGCTGAAACCATTTCT+AGG | - | chr4.2:19006520-19006539 | MS.gene36138:intron | 35.0% | |
TTGAATACCTTCGATCTTTG+GGG | + | chr4.2:19005461-19005480 | None:intergenic | 35.0% | |
! | AGGAAGAAAAACAGAGTGTT+AGG | + | chr4.2:19005370-19005389 | None:intergenic | 35.0% |
! | CAATTGGTTGATATGCTCAA+TGG | - | chr4.2:19006934-19006953 | MS.gene36138:intron | 35.0% |
! | GTTTAGGATATCTACAAGCA+TGG | + | chr4.2:19006709-19006728 | None:intergenic | 35.0% |
! | TGATTTTGCTTCTTAAGGAG+GGG | - | chr4.2:19006604-19006623 | MS.gene36138:intron | 35.0% |
!! | GTCTTTTGTTGACTATTGGT+AGG | - | chr4.2:19006748-19006767 | MS.gene36138:intron | 35.0% |
!! | TTATAGAGTGTTGTGGATGT+AGG | - | chr4.2:19006403-19006422 | MS.gene36138:intron | 35.0% |
!! | TTGTTGCTTATAGAGTGTTG+TGG | - | chr4.2:19006396-19006415 | MS.gene36138:intron | 35.0% |
!!! | GGGATCTTATGTGTTGATTT+TGG | - | chr4.2:19006955-19006974 | MS.gene36138:intron | 35.0% |
AACAAGGAGAGAGTAGGTAT+CGG | + | chr4.2:19005272-19005291 | None:intergenic | 40.0% | |
ACAGAGAGAGAAGAGAGAAA+AGG | + | chr4.2:19005322-19005341 | None:intergenic | 40.0% | |
ACCATTTGAATTTCGAGGAG+AGG | + | chr4.2:19007639-19007658 | None:intergenic | 40.0% | |
ACTCTATAAGCAACAAGGAC+AGG | + | chr4.2:19006392-19006411 | None:intergenic | 40.0% | |
ACTTACATCCTCTCAGCATT+AGG | + | chr4.2:19005784-19005803 | None:intergenic | 40.0% | |
AGAGAAAAGGGTTTCGCTTA+CGG | + | chr4.2:19005309-19005328 | None:intergenic | 40.0% | |
AGCCTACCAAAAGTCAACAA+AGG | + | chr4.2:19006854-19006873 | None:intergenic | 40.0% | |
ATATGCTCCTCTTCAGAGAA+GGG | + | chr4.2:19007487-19007506 | None:intergenic | 40.0% | |
ATATGCTGATGAAGCTTCCA+AGG | - | chr4.2:19005602-19005621 | MS.gene36138:CDS | 40.0% | |
CAAGAATGTCAAAACACCAC+TGG | + | chr4.2:19007023-19007042 | None:intergenic | 40.0% | |
CAGAGAGAGAAGAGAGAAAA+GGG | + | chr4.2:19005321-19005340 | None:intergenic | 40.0% | |
CATTTGAATTTCGAGGAGAG+GGG | + | chr4.2:19007637-19007656 | None:intergenic | 40.0% | |
CCATTTGAATTTCGAGGAGA+GGG | + | chr4.2:19007638-19007657 | None:intergenic | 40.0% | |
CTTACATCCTCTCAGCATTA+GGG | + | chr4.2:19005783-19005802 | None:intergenic | 40.0% | |
TACGACTATCAGGACTTTCA+CGG | + | chr4.2:19007547-19007566 | None:intergenic | 40.0% | |
TCTTTATCCCCAAAGATCGA+AGG | - | chr4.2:19005451-19005470 | MS.gene36138:CDS | 40.0% | |
TGCATACTGATATTGGATGC+TGG | - | chr4.2:19006203-19006222 | MS.gene36138:intron | 40.0% | |
! | TAGGGCCATATTTTGCAAAC+TGG | + | chr4.2:19005765-19005784 | None:intergenic | 40.0% |
! | TTGTGGATGTAGGAGAGTTT+TGG | - | chr4.2:19006413-19006432 | MS.gene36138:intron | 40.0% |
!! | AGAATTGAGCGGGTTACAAA+AGG | + | chr4.2:19007744-19007763 | None:intergenic | 40.0% |
!! | CACTCTGTTTTTCTTCCTCT+AGG | - | chr4.2:19005372-19005391 | MS.gene36138:CDS | 40.0% |
!! | TTTTCAGGGAGAATGGTTGA+TGG | - | chr4.2:19005724-19005743 | MS.gene36138:CDS | 40.0% |
!!! | GTCCTTTGTTGACTTTTGGT+AGG | - | chr4.2:19006849-19006868 | MS.gene36138:intron | 40.0% |
AAAAGGGTTTCGCTTACGGA+AGG | + | chr4.2:19005305-19005324 | None:intergenic | 45.0% | |
AAGCTTCCAAGGCTGTTGAT+AGG | - | chr4.2:19005613-19005632 | MS.gene36138:intron | 45.0% | |
AATATGGCCCTAATGCTGAG+AGG | - | chr4.2:19005773-19005792 | MS.gene36138:CDS | 45.0% | |
AATTCACTTCTCGTACCCAG+TGG | - | chr4.2:19007004-19007023 | MS.gene36138:intron | 45.0% | |
AGCCATCTTCGCTATCAAAG+AGG | - | chr4.2:19007706-19007725 | MS.gene36138:intron | 45.0% | |
AGGGTTACTCAGTGTGTGTT+TGG | + | chr4.2:19006137-19006156 | None:intergenic | 45.0% | |
AGTGCTAGTCCTGGTTACAA+GGG | - | chr4.2:19007215-19007234 | MS.gene36138:intron | 45.0% | |
CCCTCTCCTCGAAATTCAAA+TGG | - | chr4.2:19007635-19007654 | MS.gene36138:intron | 45.0% | |
CTAAAAAGAGCCCTTCTCCA+AGG | - | chr4.2:19007420-19007439 | MS.gene36138:CDS | 45.0% | |
CTCCTTGAGCTCTTTGATCT+CGG | + | chr4.2:19006328-19006347 | None:intergenic | 45.0% | |
GATATGCTCCTCTTCAGAGA+AGG | + | chr4.2:19007488-19007507 | None:intergenic | 45.0% | |
GGAAGGTGATGTTGAGAACA+AGG | + | chr4.2:19005288-19005307 | None:intergenic | 45.0% | |
GTTGAGAACAAGGAGAGAGT+AGG | + | chr4.2:19005278-19005297 | None:intergenic | 45.0% | |
TACTACGACGCTCATCATCA+TGG | + | chr4.2:19007256-19007275 | None:intergenic | 45.0% | |
TAGTGCTAGTCCTGGTTACA+AGG | - | chr4.2:19007214-19007233 | MS.gene36138:intron | 45.0% | |
TCCTTGAGCTCTTTGATCTC+GGG | + | chr4.2:19006327-19006346 | None:intergenic | 45.0% | |
! | CTTGGAGAAGGGCTCTTTTT+AGG | + | chr4.2:19007422-19007441 | None:intergenic | 45.0% |
! | TGTAACCAGGACTAGCACTA+CGG | + | chr4.2:19007214-19007233 | None:intergenic | 45.0% |
!! | TGCCTCTTTGATAGCGAAGA+TGG | + | chr4.2:19007711-19007730 | None:intergenic | 45.0% |
!! | TGGATGTAGGAGAGTTTTGG+TGG | - | chr4.2:19006416-19006435 | MS.gene36138:intron | 45.0% |
!! | ATTTCATTTATTTAAAAAAA+AGG | - | chr4.2:19005664-19005683 | MS.gene36138:intron | 5.0% |
!! | TTTCATTTATTTAAAAAAAA+GGG | - | chr4.2:19005665-19005684 | MS.gene36138:intron | 5.0% |
AAAAGAGCCCTTCTCCAAGG+AGG | - | chr4.2:19007423-19007442 | MS.gene36138:CDS | 50.0% | |
AATAGAACTGCGTCGCACTG+GGG | + | chr4.2:19007399-19007418 | None:intergenic | 50.0% | |
ACCTGTCCACTGATCTGCTT+CGG | + | chr4.2:19007283-19007302 | None:intergenic | 50.0% | |
ATGAACGTGACAGACACCGT+GGG | - | chr4.2:19007156-19007175 | MS.gene36138:intron | 50.0% | |
ATGTCTCACTTCGGTAGGTC+AGG | - | chr4.2:19005232-19005251 | MS.gene36138:intron | 50.0% | |
CAACGGAAATAGGTCATCGG+CGG | + | chr4.2:19005403-19005422 | None:intergenic | 50.0% | |
CCTTGAGCTCTTTGATCTCG+GGG | + | chr4.2:19006326-19006345 | None:intergenic | 50.0% | |
CTATCAGGACTTTCACGGAG+TGG | + | chr4.2:19007542-19007561 | None:intergenic | 50.0% | |
GAATAGAACTGCGTCGCACT+GGG | + | chr4.2:19007400-19007419 | None:intergenic | 50.0% | |
GTCGCAGCAGGAGTTATGAT+AGG | - | chr4.2:19007132-19007151 | MS.gene36138:intron | 50.0% | |
TAGAAGCCGAAGCAGATCAG+TGG | - | chr4.2:19007274-19007293 | MS.gene36138:intron | 50.0% | |
TAGCACTACGGCTTCTGCTT+CGG | + | chr4.2:19007202-19007221 | None:intergenic | 50.0% | |
TGCACTCACCTTCTCTTGCT+GGG | + | chr4.2:19006358-19006377 | None:intergenic | 50.0% | |
TTCAGAGAAGGGCTCCTCTT+TGG | + | chr4.2:19007476-19007495 | None:intergenic | 50.0% | |
! | AAGGCTGTTGATAGGCTCGA+CGG | - | chr4.2:19005621-19005640 | MS.gene36138:intron | 50.0% |
! | AAGGGCTCCTCTTTGGAGAT+GGG | + | chr4.2:19007469-19007488 | None:intergenic | 50.0% |
! | ATGGGCTCCTCTTTGGAGAA+GGG | + | chr4.2:19007451-19007470 | None:intergenic | 50.0% |
! | CCTGGGGGAAACACTCTTTT+GGG | + | chr4.2:19007513-19007532 | None:intergenic | 50.0% |
! | CTGGGGGAAACACTCTTTTG+GGG | + | chr4.2:19007512-19007531 | None:intergenic | 50.0% |
! | GAAAGGACTGGTGAATCGAG+AGG | - | chr4.2:19005558-19005577 | MS.gene36138:CDS | 50.0% |
! | TCCTGGGGGAAACACTCTTT+TGG | + | chr4.2:19007514-19007533 | None:intergenic | 50.0% |
! | TGGGGGAAACACTCTTTTGG+GGG | + | chr4.2:19007511-19007530 | None:intergenic | 50.0% |
! | TTTGGAGATGGGCTCCTCTT+TGG | + | chr4.2:19007458-19007477 | None:intergenic | 50.0% |
!! | GAGTAGGTATCGGAGATGTC+TGG | + | chr4.2:19005262-19005281 | None:intergenic | 50.0% |
!! | TAGGTATCGGAGATGTCTGG+AGG | + | chr4.2:19005259-19005278 | None:intergenic | 50.0% |
!! | TCACGGAGTGGACTTTTCCT+GGG | + | chr4.2:19007530-19007549 | None:intergenic | 50.0% |
!! | TTCACGGAGTGGACTTTTCC+TGG | + | chr4.2:19007531-19007550 | None:intergenic | 50.0% |
AAGGGCTCCTCCTTGGAGAA+GGG | + | chr4.2:19007433-19007452 | None:intergenic | 55.0% | |
ACCTTCTCTTGCTGGGACTG+CGG | + | chr4.2:19006351-19006370 | None:intergenic | 55.0% | |
AGAAGCCGTAGTGCTAGTCC+TGG | - | chr4.2:19007206-19007225 | MS.gene36138:intron | 55.0% | |
AGAGGAGCCCATCTCCAAAG+AGG | - | chr4.2:19007459-19007478 | MS.gene36138:intron | 55.0% | |
AGTCCTGATAGTCGTAGCCG+TGG | - | chr4.2:19007551-19007570 | MS.gene36138:CDS | 55.0% | |
CATGAACGTGACAGACACCG+TGG | - | chr4.2:19007155-19007174 | MS.gene36138:intron | 55.0% | |
CCCCGAGATCAAAGAGCTCA+AGG | - | chr4.2:19006323-19006342 | MS.gene36138:intron | 55.0% | |
GCGTAAGAGACCTTCCACCA+CGG | + | chr4.2:19007571-19007590 | None:intergenic | 55.0% | |
GGAATAGAACTGCGTCGCAC+TGG | + | chr4.2:19007401-19007420 | None:intergenic | 55.0% | |
GTCGAGCCTATCAACAGCCT+TGG | + | chr4.2:19005622-19005641 | None:intergenic | 55.0% | |
GTGCACTCACCTTCTCTTGC+TGG | + | chr4.2:19006359-19006378 | None:intergenic | 55.0% | |
TGGTTACAAGGGCCGTGGAA+GGG | - | chr4.2:19007226-19007245 | MS.gene36138:CDS | 55.0% | |
TTTGGAGAAGGGCTCCTCCT+TGG | + | chr4.2:19007440-19007459 | None:intergenic | 55.0% | |
! | AGAGGAGCCCTTCTCTGAAG+AGG | - | chr4.2:19007477-19007496 | MS.gene36138:intron | 55.0% |
! | ATAGTCGTAGCCGTGGTGGA+AGG | - | chr4.2:19007558-19007577 | MS.gene36138:CDS | 55.0% |
! | GAAGGGCTCCTCTTTGGAGA+TGG | + | chr4.2:19007470-19007489 | None:intergenic | 55.0% |
! | GATGGGCTCCTCTTTGGAGA+AGG | + | chr4.2:19007452-19007471 | None:intergenic | 55.0% |
! | GGGGGAAACACTCTTTTGGG+GGG | + | chr4.2:19007510-19007529 | None:intergenic | 55.0% |
!! | ACGGAGTGGACTTTTCCTGG+GGG | + | chr4.2:19007528-19007547 | None:intergenic | 55.0% |
!! | CACGGAGTGGACTTTTCCTG+GGG | + | chr4.2:19007529-19007548 | None:intergenic | 55.0% |
!! | CCCAAAAGAGTGTTTCCCCC+AGG | - | chr4.2:19007510-19007529 | MS.gene36138:intron | 55.0% |
ACAGACACCGTGGGCGAGAT+AGG | - | chr4.2:19007165-19007184 | MS.gene36138:intron | 60.0% | |
ACAGGAGGAGAAGTCGCAGC+AGG | - | chr4.2:19007120-19007139 | MS.gene36138:intron | 60.0% | |
AGTCCTGGTTACAAGGGCCG+TGG | - | chr4.2:19007221-19007240 | MS.gene36138:CDS | 60.0% | |
CAGACACCGTGGGCGAGATA+GGG | - | chr4.2:19007166-19007185 | MS.gene36138:intron | 60.0% | |
CCACCACGGCTACGACTATC+AGG | + | chr4.2:19007557-19007576 | None:intergenic | 60.0% | |
CCTGATAGTCGTAGCCGTGG+TGG | - | chr4.2:19007554-19007573 | MS.gene36138:CDS | 60.0% | |
CGGAAATAGGTCATCGGCGG+TGG | + | chr4.2:19005400-19005419 | None:intergenic | 60.0% | |
CTGGTTACAAGGGCCGTGGA+AGG | - | chr4.2:19007225-19007244 | MS.gene36138:CDS | 60.0% | |
CTTCCACGGCCCTTGTAACC+AGG | + | chr4.2:19007227-19007246 | None:intergenic | 60.0% | |
GAAGGGCTCCTCCTTGGAGA+AGG | + | chr4.2:19007434-19007453 | None:intergenic | 60.0% | |
GATGGTCCCTATCTCGCCCA+CGG | + | chr4.2:19007175-19007194 | None:intergenic | 60.0% | |
GCCGAAGCAGATCAGTGGAC+AGG | - | chr4.2:19007279-19007298 | MS.gene36138:intron | 60.0% | |
GGAGGAGCCCTTCTCCAAAG+AGG | - | chr4.2:19007441-19007460 | MS.gene36138:intron | 60.0% | |
GGTTACAAGGGCCGTGGAAG+GGG | - | chr4.2:19007227-19007246 | MS.gene36138:CDS | 60.0% | |
GTTACAAGGGCCGTGGAAGG+GGG | - | chr4.2:19007228-19007247 | MS.gene36138:CDS | 60.0% | |
AACTGCGTCGCACTGGGGAG+CGG | + | chr4.2:19007394-19007413 | None:intergenic | 65.0% | |
CATCATGGCGCCCCCTTCCA+CGG | + | chr4.2:19007241-19007260 | None:intergenic | 65.0% | |
CCTCGCAGTGTCTCACCACG+AGG | - | chr4.2:19007590-19007609 | MS.gene36138:CDS | 65.0% | |
CCTCGTGGTGAGACACTGCG+AGG | + | chr4.2:19007593-19007612 | None:intergenic | 65.0% | |
GCCGCAGTCCCAGCAAGAGA+AGG | - | chr4.2:19006347-19006366 | MS.gene36138:intron | 65.0% | |
GGCTTCTGCTTCGGCGACGA+TGG | + | chr4.2:19007193-19007212 | None:intergenic | 65.0% | |
GTCTCACCACGAGGTCGTCC+TGG | - | chr4.2:19007599-19007618 | MS.gene36138:CDS | 65.0% | |
TCATCGGCGGTGGTGCCTAG+AGG | + | chr4.2:19005390-19005409 | None:intergenic | 65.0% | |
! | GAAGCACCAGGACGACCTCG+TGG | + | chr4.2:19007608-19007627 | None:intergenic | 65.0% |
!! | GAGGGGCTTCGAGAAGCACC+AGG | + | chr4.2:19007620-19007639 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 19005232 | 19007783 | 19005232 | ID=MS.gene36138 |
chr4.2 | mRNA | 19005232 | 19007783 | 19005232 | ID=MS.gene36138.t1;Parent=MS.gene36138 |
chr4.2 | exon | 19007708 | 19007783 | 19007708 | ID=MS.gene36138.t1.exon1;Parent=MS.gene36138.t1 |
chr4.2 | CDS | 19007708 | 19007783 | 19007708 | ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1 |
chr4.2 | exon | 19007543 | 19007621 | 19007543 | ID=MS.gene36138.t1.exon2;Parent=MS.gene36138.t1 |
chr4.2 | CDS | 19007543 | 19007621 | 19007543 | ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1 |
chr4.2 | exon | 19007373 | 19007452 | 19007373 | ID=MS.gene36138.t1.exon3;Parent=MS.gene36138.t1 |
chr4.2 | CDS | 19007373 | 19007452 | 19007373 | ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1 |
chr4.2 | exon | 19007218 | 19007284 | 19007218 | ID=MS.gene36138.t1.exon4;Parent=MS.gene36138.t1 |
chr4.2 | CDS | 19007218 | 19007284 | 19007218 | ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1 |
chr4.2 | exon | 19006647 | 19006718 | 19006647 | ID=MS.gene36138.t1.exon5;Parent=MS.gene36138.t1 |
chr4.2 | CDS | 19006647 | 19006718 | 19006647 | ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1 |
chr4.2 | exon | 19005715 | 19005924 | 19005715 | ID=MS.gene36138.t1.exon6;Parent=MS.gene36138.t1 |
chr4.2 | CDS | 19005715 | 19005924 | 19005715 | ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1 |
chr4.2 | exon | 19005354 | 19005624 | 19005354 | ID=MS.gene36138.t1.exon7;Parent=MS.gene36138.t1 |
chr4.2 | CDS | 19005354 | 19005624 | 19005354 | ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1 |
chr4.2 | exon | 19005232 | 19005237 | 19005232 | ID=MS.gene36138.t1.exon8;Parent=MS.gene36138.t1 |
chr4.2 | CDS | 19005232 | 19005237 | 19005232 | ID=cds.MS.gene36138.t1;Parent=MS.gene36138.t1 |
Gene Sequence |
Protein sequence |