AlfalfaGEDB | MS.gene36215

M. sativa cultivar XinJiangDaYe / MS.gene36215

KEGG: K13280
GO: GO:0003674 GO:0003824 GO:0005575 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:0110165 GO:0140096 GO:1901564
PFAM: PF00717.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36215.t1	XP_003597879.1	99.4	180	1	0	1	180	1	180	7.10E-94	353.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36215.t1	Q9R0P6	58.5	176	71	2	6	180	5	179	8.3e-51	201.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36215.t1	Q2HUB9	99.4	180	1	0	1	180	1	180	5.1e-94	353.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049825	MS.gene36215	0.803313	3.70E-49	-1.69E-46
MS.gene050807	MS.gene36215	0.81617	6.35E-52	-1.69E-46
MS.gene051279	MS.gene36215	0.826488	2.64E-54	-1.69E-46
MS.gene051832	MS.gene36215	0.800548	1.37E-48	-1.69E-46
MS.gene051957	MS.gene36215	0.805959	1.04E-49	-1.69E-46
MS.gene052239	MS.gene36215	-0.826629	2.44E-54	-1.69E-46
MS.gene053599	MS.gene36215	0.804239	2.38E-49	-1.69E-46
MS.gene057287	MS.gene36215	0.809296	2.03E-50	-1.69E-46
MS.gene057694	MS.gene36215	0.801196	1.01E-48	-1.69E-46
MS.gene057705	MS.gene36215	0.816097	6.59E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene023404	MS.gene36215	PPI
MS.gene045260	MS.gene36215	PPI
MS.gene045262	MS.gene36215	PPI
MS.gene045263	MS.gene36215	PPI
MS.gene045264	MS.gene36215	PPI
MS.gene066812	MS.gene36215	PPI
MS.gene066813	MS.gene36215	PPI
MS.gene066829	MS.gene36215	PPI
MS.gene08445	MS.gene36215	PPI
MS.gene09040	MS.gene36215	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36215.t1	MTR_2g103570	99.444	180	1	0	1	180	1	180	2.20e-129	360

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36215.t1	AT1G52600	91.111	180	16	0	1	180	1	180	1.84e-120	338
MS.gene36215.t1	AT3G15710	85.000	180	27	0	1	180	1	180	1.06e-109	311

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Find 50 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCATTGATGTGCATCAC+TGG	0.537420	2.1:+2178914	MS.gene36215:CDS
ACAATCTCTCCTGCGCGAAT+TGG	0.370765	2.1:-2179179	None:intergenic
ACATGAAAGAGGAGATACCG+GGG	0.758036	2.1:+2180030	MS.gene36215:CDS
ACATTATGGGTAGAGCTGTT+GGG	0.526062	2.1:+2180317	MS.gene36215:CDS
ACGGATCTGAAGAGATTTGA+TGG	0.414274	2.1:-2178067	None:intergenic
AGAAACGCAATGGGTTTCGT+TGG	0.517115	2.1:+2178030	None:intergenic
AGCAAACAAACCTTGATGAT+AGG	0.465854	2.1:-2180685	None:intergenic
AGTAAGGATCCAATTCGCGC+AGG	0.635833	2.1:+2179170	MS.gene36215:CDS
ATAACAACTATGGGGATGAC+AGG	0.548283	2.1:+2180254	MS.gene36215:CDS
ATATTCTCATTGGTGCTTTG+GGG	0.529101	2.1:+2180948	MS.gene36215:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGCAAAATACAAGAGA+CGG	-	chr2.1:2180224-2180243	None:intergenic	30.0%
AACAAACTGTTAATCCAAAC+AGG	+	chr2.1:2178772-2178791	MS.gene36215:intron	30.0%
AATGCAAACTGTAGGAATTA+GGG	-	chr2.1:2180544-2180563	None:intergenic	30.0%
ACAAACTGTTAATCCAAACA+GGG	+	chr2.1:2178773-2178792	MS.gene36215:intron	30.0%
ACATTGCTTGTATTTGTCAA+TGG	+	chr2.1:2180613-2180632	MS.gene36215:intron	30.0%
ATCAAATTCACTACTGAGAT+TGG	-	chr2.1:2180133-2180152	None:intergenic	30.0%
CAGCTAAATGATAACACAAT+AGG	-	chr2.1:2180718-2180737	None:intergenic	30.0%
GAATGAGATCTGTGATATTA+AGG	+	chr2.1:2180421-2180440	MS.gene36215:intron	30.0%
GAATTAGGGTAGGATAAATT+AGG	-	chr2.1:2180530-2180549	None:intergenic	30.0%
GATAAATTAGGATAAACCCT+TGG	-	chr2.1:2180518-2180537	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	2178039	2180997	2178039	ID=MS.gene36215
chr2.1	mRNA	2178039	2180997	2178039	ID=MS.gene36215.t1;Parent=MS.gene36215
chr2.1	exon	2178039	2178117	2178039	ID=MS.gene36215.t1.exon1;Parent=MS.gene36215.t1
chr2.1	CDS	2178039	2178117	2178039	ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1	exon	2178882	2178994	2178882	ID=MS.gene36215.t1.exon2;Parent=MS.gene36215.t1
chr2.1	CDS	2178882	2178994	2178882	ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1	exon	2179146	2179217	2179146	ID=MS.gene36215.t1.exon3;Parent=MS.gene36215.t1
chr2.1	CDS	2179146	2179217	2179146	ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1	exon	2179371	2179406	2179371	ID=MS.gene36215.t1.exon4;Parent=MS.gene36215.t1
chr2.1	CDS	2179371	2179406	2179371	ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1	exon	2180028	2180073	2180028	ID=MS.gene36215.t1.exon5;Parent=MS.gene36215.t1
chr2.1	CDS	2180028	2180073	2180028	ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1	exon	2180251	2180338	2180251	ID=MS.gene36215.t1.exon6;Parent=MS.gene36215.t1
chr2.1	CDS	2180251	2180338	2180251	ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1	exon	2180639	2180696	2180639	ID=MS.gene36215.t1.exon7;Parent=MS.gene36215.t1
chr2.1	CDS	2180639	2180696	2180639	ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1	exon	2180947	2180997	2180947	ID=MS.gene36215.t1.exon8;Parent=MS.gene36215.t1
chr2.1	CDS	2180947	2180997	2180947	ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1

Gene Sequence

>MS.gene36215

ATGGGTTTCGTTGGTGACACTGTCGATTCCATCAAATCTCTTCAGATCCGTCAGGTCCTCGCTCAGGCTGTTAGCCTTGGTCAGTTTTCTCTTTCCCCAATTCAATTCAACAAAAAAAAAACTATCTTTACATTATAGAATTTCTATTTGGTACCTACATTGATCTGGGTCGACTTTAAAATCATCGAATTTTGAAGTTTTTGATGAAAAATCTTCACTTTTTTATTTTTGTATTTTTAGGGTTTATGCCAAGAATTCCAATTTTAATCAATTATTATATGGGGTTTTGTCAAAAAATGAATTATTATATGGGGTATCATTTTTTTCAATTTTTGGATGTGGGGTTATCATCAATTTAGGTTATAATTCAAGGTTTTTCGTGTTGTGGTTTATGGGTTTATTGATAAATGGTTGTTTATCTTTAAGGATTTTGATGAGGGGGAGATTGTGAGGAATTCTAATGTTAAGGGCATGTTTGGATTGGCTTATTTGAGTTTATCCAATCATATAAGTCTGTGAGACTGTTTGGAAGAGCTTATGAAAACAGCTTATGACATTTGTTCATAAGCTGTTTTTAACTTGTTTTTCATGAGTTCTCGAAGATTGCTTTTGAAAACAGCTTATAGCTTATACGAAAACTATTTTTTTATTTAACTTTATTTTATCTTTTTGGCTATAGAAATAGCTTATACATAAGCACTTCTCACGATAAGCTTCTGTGCTATAATCTATAAACAAACTGTTAATCCAAACAGGGCCTATGTAGATTATATGAACACCATAGAATTGCTTCCAGATCATTGTTTTATTCATAGAACTTGTTTTCCTTGTGTTCTGCTTCAGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCATCACTGGCAGTGAATCTCCTGTTGTCGTTGTTCTTTCTGGAAGTATGGAACCGGGCTTCAAACGTGTAAGCAAATCTTATGCATCGCAGCCTTAGTAATTCTGTATCTAATATTTTTATACAATAACAGTACAGTGTCATCAAGAAGAGACAAGCTGCATATATATATTCAAATCGTCTGTTTCTTTCTGTTGCTAATGAATATTGGTTTTTGCAGGGGGACATCTTGTTCTTACACATGAGTAAGGATCCAATTCGCGCAGGAGAGATTGTTGTATTTAATATAGATGTAAGTTCACCTCTCTGTTGTATATCCTGTATGTTTTACTTACTTCAATTCGTATCTATATTTCAGCACTTTCCGATTCTTTGTATTCTACTTGATACTTTCCTTACTGACAAAATCTGTTGGTATGTACCCTTGTTTTTTTTTTTCCTTTAGGGACGAGAGATTCCGATCGTGCATCGTGTAATTAAGGTAAGCTCAGTATTTTGGTTGAATTTAGTATGTTCTTTCATCAGTTGCATCATTGCTGAATGTGACTTTGAGACGGAGTGCTCTGCACCTTCTCATGTTAGAGCCTTGGATCATGAGATGATCCACACATAATTGTCTTCTGGCTGGAATATTAGGAAAAAGTTGTTCACGGTGCTGGATGGAGGGATACATTTCATTTCTTGAATGTGTAGGGATACCTATTCAAACTGTAACTACATAATTTACATGACAGAATGAGCTTACCAACCTTGATTTGGGTGTGGGTCCATTTTTGTATCTGGGTCCTATCAACATAGTCACTACCTGCTTTTAGTTCTTATTTATCATAGCTCAATAAAAAAATAAATATATAAGGATCGATACATTGTGAACTGATGCCATTGGAAGTTCCTTCACTTTTTGAACCTCTGGTGCTGTTTGAACTACTTTCATCAATATCTTGTCATTTGCAAGTGACAACTTGTGGAAACTGGAGAGTGCAGAGTATCACTAATCTGAGAAATAATGGATAAGATTGATATTACCTGGATTGATCTTCATGCGTTGAGTGATAGTTAAGATTGTCCTGTTTGAGACTCTAAATGCTTGATCATTTTGTAGGTACATGAAAGAGGAGATACCGGGGAGGTTGATGTTCTCACAAAAGGTAGTGACTATAACTGAAATACTGACTACTGAATTTACGCTCTACATATACAAAACCCAATCTCAGTAGTGAATTTGATCCAATATTATATTTCCTTTTTCTCGTTTAGTTGTCAATTTATATAGTGGTTGTCTGATAATGTAACACCCGTCTCTTGTATTTTGCTGTTTTTGGCAGGAGATAACAACTATGGGGATGACAGGCTACTGTATGCTCATGGCCAGCTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCTGTTGGGTATGTATAGCATTTCTCATAGACTCGTAACATAAGGATTAAGGTTATATGTTTTTAAGTATTAAGTCTTGAACTATAATAAGAATGAGATCTGTGATATTAAGGTATTATGCATGGTTTATGCTTGAAGATACCGACTTGTGGAATATCTAACACTTCTTGAACCTTTGAACATACCAAGGGTTTATCCTAATTTATCCTACCCTAATTCCTACAGTTTGCATTCCTATAGAACAAAGCATGTTTTGAAATCATTTTATGACATTCTGTGTTAACATTGCTTGTATTTGTCAATGGCAGGTTCCTACCTTATGTTGGCTGGGTGACAATTATCATGACTGAAAAACCTATCATCAAGGTTTGTTTGCTCCGCCAACCTATTGTGTTATCATTTAGCTGAAGTTGGTTGTTTTACATTTATGTATGTTTATGGTGAAACCTATCATCAAGGTTTGCTTATGGTGAAACCTATCATGATTTTTAACCAATGGGCTATGATTTTCCACTTTTCTCTCTCAAGTCAACTCCTTACATTAGAGCAAGTAGATCCTATAATTTGAATTGCAACAAGTATGAAGTGTGCTAATGCTGTCTCTTATGTTTTGCAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCAAAAGAGTAA

Protein sequence

>MS.gene36215.t1

MGFVGDTVDSIKSLQIRQVLAQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNIDGREIPIVHRVIKVHERGDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKE