AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36215

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36215.t1 MTR_2g103570 99.444 180 1 0 1 180 1 180 2.20e-129 360
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36215.t1 AT1G52600 91.111 180 16 0 1 180 1 180 1.84e-120 338
MS.gene36215.t1 AT3G15710 85.000 180 27 0 1 180 1 180 1.06e-109 311

Find 50 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTTGTCGTTGTTCTTTC+TGG -0.006320 2.1:+2178947 MS.gene36215:CDS
TATATTCTCATTGGTGCTTT+GGG 0.216256 2.1:+2180947 MS.gene36215:CDS
GCTGCAAAGGCACCACATTA+TGG 0.262708 2.1:+2180303 MS.gene36215:CDS
CGTTGTTCTTTCTGGAAGTA+TGG 0.268459 2.1:+2178955 MS.gene36215:CDS
TTACGTCTGCACTGATAATA+TGG 0.295460 2.1:+2178891 MS.gene36215:CDS
GTATATTCTCATTGGTGCTT+TGG 0.303583 2.1:+2180946 MS.gene36215:intron
GATCGTGCATCGTGTAATTA+AGG 0.306443 2.1:+2179385 MS.gene36215:CDS
GGTTCCTACCTTATGTTGGC+TGG 0.311493 2.1:+2180638 MS.gene36215:intron
TTGGCAGGAGATAACAACTA+TGG 0.367451 2.1:+2180244 MS.gene36215:intron
ACAATCTCTCCTGCGCGAAT+TGG 0.370765 2.1:-2179179 None:intergenic
CTGCAAAGGCACCACATTAT+GGG 0.401647 2.1:+2180304 MS.gene36215:CDS
ACGGATCTGAAGAGATTTGA+TGG 0.414274 2.1:-2178067 None:intergenic
ATGGCCAGCTTTGGCTGCAA+AGG 0.415700 2.1:+2180290 MS.gene36215:CDS
TCTTTCTGGAAGTATGGAAC+CGG 0.425999 2.1:+2178961 MS.gene36215:CDS
TGTATGCTCATGGCCAGCTT+TGG 0.429153 2.1:+2180281 MS.gene36215:CDS
CTCGCTCAGGCTGTTAGCCT+TGG 0.440341 2.1:+2178096 MS.gene36215:CDS
CCAGAAAGAACAACGACAAC+AGG 0.443989 2.1:-2178947 None:intergenic
CTTGTTCTTACACATGAGTA+AGG 0.448520 2.1:+2179154 MS.gene36215:CDS
AGCAAACAAACCTTGATGAT+AGG 0.465854 2.1:-2180685 None:intergenic
GGTGCCTTTGCAGCCAAAGC+TGG 0.467005 2.1:-2180294 None:intergenic
CACATTATGGGTAGAGCTGT+TGG 0.467483 2.1:+2180316 MS.gene36215:CDS
GTTCCTACCTTATGTTGGCT+GGG 0.472418 2.1:+2180639 MS.gene36215:CDS
TTGCTTACACGTTTGAAGCC+CGG 0.485448 2.1:-2178980 None:intergenic
GGCAGGTTCCTACCTTATGT+TGG 0.490903 2.1:+2180634 MS.gene36215:intron
GTACATGAAAGAGGAGATAC+CGG 0.495722 2.1:+2180028 MS.gene36215:CDS
ATTGTCACCCAGCCAACATA+AGG 0.495952 2.1:-2180646 None:intergenic
GATCCGTCAGGTCCTCGCTC+AGG 0.500941 2.1:+2178083 MS.gene36215:CDS
TGGCAGGAGATAACAACTAT+GGG 0.501904 2.1:+2180245 MS.gene36215:intron
AGAAACGCAATGGGTTTCGT+TGG 0.517115 2.1:+2178030 None:intergenic
ACATTATGGGTAGAGCTGTT+GGG 0.526062 2.1:+2180317 MS.gene36215:CDS
ATATTCTCATTGGTGCTTTG+GGG 0.529101 2.1:+2180948 MS.gene36215:CDS
TTAATTACACGATGCACGAT+CGG 0.532530 2.1:-2179383 None:intergenic
CTTTCTGGAAGTATGGAACC+GGG 0.532635 2.1:+2178962 MS.gene36215:CDS
AAGGCATTGATGTGCATCAC+TGG 0.537420 2.1:+2178914 MS.gene36215:CDS
GAGGTTGATGTTCTCACAAA+AGG 0.544332 2.1:+2180052 MS.gene36215:CDS
TGATAACTTCAAAAGAGTAA+AGG 0.546067 2.1:+2180978 MS.gene36215:CDS
CAAATCTCTTCAGATCCGTC+AGG 0.547809 2.1:+2178071 MS.gene36215:CDS
ATAACAACTATGGGGATGAC+AGG 0.548283 2.1:+2180254 MS.gene36215:CDS
CAGCCTGAGCGAGGACCTGA+CGG 0.588038 2.1:-2178086 None:intergenic
TGTGAGAACATCAACCTCCC+CGG 0.595167 2.1:-2180047 None:intergenic
TACATGAAAGAGGAGATACC+GGG 0.600542 2.1:+2180029 MS.gene36215:CDS
GACAGGCTACTGTATGCTCA+TGG 0.602506 2.1:+2180271 MS.gene36215:CDS
GTCTGCACTGATAATATGGA+AGG 0.605731 2.1:+2178895 MS.gene36215:CDS
AGTAAGGATCCAATTCGCGC+AGG 0.635833 2.1:+2179170 MS.gene36215:CDS
TCACCCAGCCAACATAAGGT+AGG 0.651154 2.1:-2180642 None:intergenic
CAACAGCTCTACCCATAATG+TGG 0.657840 2.1:-2180315 None:intergenic
CAAGGCTAACAGCCTGAGCG+AGG 0.672474 2.1:-2178095 None:intergenic
GGCAGGAGATAACAACTATG+GGG 0.694070 2.1:+2180246 MS.gene36215:intron
ACATGAAAGAGGAGATACCG+GGG 0.758036 2.1:+2180030 MS.gene36215:CDS
TGAAAGAGGAGATACCGGGG+AGG 0.784707 2.1:+2180033 MS.gene36215:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATAAATATATA+AGG + chr2.1:2179760-2179779 MS.gene36215:intron 0.0%
!! AAAAAATGAATTATTATATG+GGG + chr2.1:2178330-2178349 MS.gene36215:intron 10.0%
!! CAAAAAATGAATTATTATAT+GGG + chr2.1:2178329-2178348 MS.gene36215:intron 10.0%
!! TCAAAAAATGAATTATTATA+TGG + chr2.1:2178328-2178347 MS.gene36215:intron 10.0%
!!! TTAACTTTATTTTATCTTTT+TGG + chr2.1:2178689-2178708 MS.gene36215:intron 10.0%
!!! TTTTAATCAATTATTATATG+GGG + chr2.1:2178300-2178319 MS.gene36215:intron 10.0%
!! AGAAAAAGGAAATATAATAT+TGG - chr2.1:2180156-2180175 None:intergenic 15.0%
!! TAAAGGAAAAAAAAAAACAA+GGG - chr2.1:2179350-2179369 None:intergenic 15.0%
!! TACATTATAGAATTTCTATT+TGG + chr2.1:2178167-2178186 MS.gene36215:intron 15.0%
!! TTTACATTTATGTATGTTTA+TGG + chr2.1:2180749-2180768 MS.gene36215:intron 15.0%
!!! GTATCATTTTTTTCAATTTT+TGG + chr2.1:2178352-2178371 MS.gene36215:intron 15.0%
!!! TTGTTTTTTTTTTTCCTTTA+GGG + chr2.1:2179350-2179369 MS.gene36215:intron 15.0%
!!! TTTTTTTGTTGAATTGAATT+GGG - chr2.1:2178137-2178156 None:intergenic 15.0%
!!! TTTTTTTTGTTGAATTGAAT+TGG - chr2.1:2178138-2178157 None:intergenic 15.0%
!! CTAAAGGAAAAAAAAAAACA+AGG - chr2.1:2179351-2179370 None:intergenic 20.0%
!! TAAATGGTTGTTTATCTTTA+AGG + chr2.1:2178443-2178462 MS.gene36215:intron 20.0%
!! TATTAGATACAGAATTACTA+AGG - chr2.1:2179022-2179041 None:intergenic 20.0%
!! TTAGTTGTCAATTTATATAG+TGG + chr2.1:2180179-2180198 MS.gene36215:intron 20.0%
!! TTGATTAAAATTGGAATTCT+TGG - chr2.1:2178290-2178309 None:intergenic 20.0%
!! TTTATGGGTTTATTGATAAA+TGG + chr2.1:2178427-2178446 MS.gene36215:intron 20.0%
!!! CTTGTTTTTTTTTTTCCTTT+AGG + chr2.1:2179349-2179368 MS.gene36215:intron 20.0%
!!! TATCATGATTTTTAACCAAT+GGG + chr2.1:2180808-2180827 MS.gene36215:intron 20.0%
!!! TCAATTTAGGTTATAATTCA+AGG + chr2.1:2178389-2178408 MS.gene36215:intron 20.0%
!!! TTTTTTCAATTTTTGGATGT+GGG + chr2.1:2178359-2178378 MS.gene36215:intron 20.0%
!!! TTTTTTGTTGAATTGAATTG+GGG - chr2.1:2178136-2178155 None:intergenic 20.0%
!!! TTTTTTTCAATTTTTGGATG+TGG + chr2.1:2178358-2178377 MS.gene36215:intron 20.0%
! ATCACTAATCTGAGAAATAA+TGG + chr2.1:2179913-2179932 MS.gene36215:intron 25.0%
! ATTTCATTTCTTGAATGTGT+AGG + chr2.1:2179597-2179616 MS.gene36215:intron 25.0%
! CTATGAATAAAACAATGATC+TGG - chr2.1:2178834-2178853 None:intergenic 25.0%
! CTTGTTGCAATTCAAATTAT+AGG - chr2.1:2180890-2180909 None:intergenic 25.0%
! GATAAATAAGAACTAAAAGC+AGG - chr2.1:2179733-2179752 None:intergenic 25.0%
! TAAATGATAACACAATAGGT+TGG - chr2.1:2180714-2180733 None:intergenic 25.0%
! TATGTAGTTACAGTTTGAAT+AGG - chr2.1:2179627-2179646 None:intergenic 25.0%
! TATTAGGAAAAAGTTGTTCA+CGG + chr2.1:2179556-2179575 MS.gene36215:intron 25.0%
! TCAAGTAGAATACAAAGAAT+CGG - chr2.1:2179293-2179312 None:intergenic 25.0%
! TTGAAGTAAGTAAAACATAC+AGG - chr2.1:2179246-2179265 None:intergenic 25.0%
! TTTCATTTCTTGAATGTGTA+GGG + chr2.1:2179598-2179617 MS.gene36215:intron 25.0%
! TTTCTGTTGCTAATGAATAT+TGG + chr2.1:2179114-2179133 MS.gene36215:intron 25.0%
!! CATTGGTTAAAAATCATGAT+AGG - chr2.1:2180809-2180828 None:intergenic 25.0%
!! CTATCATGATTTTTAACCAA+TGG + chr2.1:2180807-2180826 MS.gene36215:intron 25.0%
!! TAAATGCTTGATCATTTTGT+AGG + chr2.1:2180006-2180025 MS.gene36215:intron 25.0%
!! TGATATTAAGGTATTATGCA+TGG + chr2.1:2180433-2180452 MS.gene36215:intron 25.0%
!!! AATGAATATTGGTTTTTGCA+GGG + chr2.1:2179125-2179144 MS.gene36215:intron 25.0%
!!! ATCTTTAAGGATTTTGATGA+GGG + chr2.1:2178456-2178475 MS.gene36215:intron 25.0%
!!! TAATGAATATTGGTTTTTGC+AGG + chr2.1:2179124-2179143 MS.gene36215:intron 25.0%
!!! TATCTTTAAGGATTTTGATG+AGG + chr2.1:2178455-2178474 MS.gene36215:intron 25.0%
!!! TTTTTCAATTTTTGGATGTG+GGG + chr2.1:2178360-2178379 MS.gene36215:intron 25.0%
AAACAGCAAAATACAAGAGA+CGG - chr2.1:2180224-2180243 None:intergenic 30.0%
AACAAACTGTTAATCCAAAC+AGG + chr2.1:2178772-2178791 MS.gene36215:intron 30.0%
AATGCAAACTGTAGGAATTA+GGG - chr2.1:2180544-2180563 None:intergenic 30.0%
ACAAACTGTTAATCCAAACA+GGG + chr2.1:2178773-2178792 MS.gene36215:intron 30.0%
ACATTGCTTGTATTTGTCAA+TGG + chr2.1:2180613-2180632 MS.gene36215:intron 30.0%
ATCAAATTCACTACTGAGAT+TGG - chr2.1:2180133-2180152 None:intergenic 30.0%
CAGCTAAATGATAACACAAT+AGG - chr2.1:2180718-2180737 None:intergenic 30.0%
GAATGAGATCTGTGATATTA+AGG + chr2.1:2180421-2180440 MS.gene36215:intron 30.0%
GAATTAGGGTAGGATAAATT+AGG - chr2.1:2180530-2180549 None:intergenic 30.0%
GATAAATTAGGATAAACCCT+TGG - chr2.1:2180518-2180537 None:intergenic 30.0%
GGTGTTCATATAATCTACAT+AGG - chr2.1:2178799-2178818 None:intergenic 30.0%
GTGAGGAATTCTAATGTTAA+GGG + chr2.1:2178486-2178505 MS.gene36215:intron 30.0%
TCAAATTCACTACTGAGATT+GGG - chr2.1:2180132-2180151 None:intergenic 30.0%
TGGATAAGATTGATATTACC+TGG + chr2.1:2179933-2179952 MS.gene36215:intron 30.0%
TGTGAGGAATTCTAATGTTA+AGG + chr2.1:2178485-2178504 MS.gene36215:intron 30.0%
TGTTATCATTTAGCTGAAGT+TGG + chr2.1:2180722-2180741 MS.gene36215:intron 30.0%
TTGACAACTAAACGAGAAAA+AGG - chr2.1:2180170-2180189 None:intergenic 30.0%
! ATTTTGTAGGTACATGAAAG+AGG + chr2.1:2180019-2180038 MS.gene36215:intron 30.0%
! CAAAACATGCTTTGTTCTAT+AGG - chr2.1:2180567-2180586 None:intergenic 30.0%
! GTTTTGCAGTATATTCTCAT+TGG + chr2.1:2180938-2180957 MS.gene36215:intron 30.0%
! TATATTCTCATTGGTGCTTT+GGG + chr2.1:2180947-2180966 MS.gene36215:CDS 30.0%
! TTAAGGTAAGCTCAGTATTT+TGG + chr2.1:2179402-2179421 MS.gene36215:intron 30.0%
! TTTTTCGTGTTGTGGTTTAT+GGG + chr2.1:2178412-2178431 MS.gene36215:intron 30.0%
!! TCTTTAAGGATTTTGATGAG+GGG + chr2.1:2178457-2178476 MS.gene36215:intron 30.0%
!!! ATGAATATTGGTTTTTGCAG+GGG + chr2.1:2179126-2179145 MS.gene36215:intron 30.0%
!!! CTCTTGTATTTTGCTGTTTT+TGG + chr2.1:2180225-2180244 MS.gene36215:intron 30.0%
AAAAGTGAAGGAACTTCCAA+TGG - chr2.1:2179808-2179827 None:intergenic 35.0%
AACAGCAAAATACAAGAGAC+GGG - chr2.1:2180223-2180242 None:intergenic 35.0%
ATACAGGATATACAACAGAG+AGG - chr2.1:2179230-2179249 None:intergenic 35.0%
ATAGGACCCAGATACAAAAA+TGG - chr2.1:2179696-2179715 None:intergenic 35.0%
ATCCACACATAATTGTCTTC+TGG + chr2.1:2179527-2179546 MS.gene36215:intron 35.0%
ATGATCTGGAAGCAATTCTA+TGG - chr2.1:2178820-2178839 None:intergenic 35.0%
ATTTGGTACCTACATTGATC+TGG + chr2.1:2178184-2178203 MS.gene36215:intron 35.0%
CTTGTTCTTACACATGAGTA+AGG + chr2.1:2179154-2179173 MS.gene36215:CDS 35.0%
GAATGCAAACTGTAGGAATT+AGG - chr2.1:2180545-2180564 None:intergenic 35.0%
GACTCGTAACATAAGGATTA+AGG + chr2.1:2180360-2180379 MS.gene36215:intron 35.0%
GACTGAAAAACCTATCATCA+AGG + chr2.1:2180675-2180694 MS.gene36215:CDS 35.0%
GATCTACTTGCTCTAATGTA+AGG - chr2.1:2180868-2180887 None:intergenic 35.0%
GTCTCACAGACTTATATGAT+TGG - chr2.1:2178541-2178560 None:intergenic 35.0%
GTGTTAGATATTCCACAAGT+CGG - chr2.1:2180475-2180494 None:intergenic 35.0%
TAAACCCTTGGTATGTTCAA+AGG - chr2.1:2180506-2180525 None:intergenic 35.0%
TATAAGTCTGTGAGACTGTT+TGG + chr2.1:2178545-2178564 MS.gene36215:intron 35.0%
TATGGTGAAACCTATCATCA+AGG + chr2.1:2180767-2180786 MS.gene36215:intron 35.0%
TCCTTACTGACAAAATCTGT+TGG + chr2.1:2179318-2179337 MS.gene36215:intron 35.0%
TCTATAGGAATGCAAACTGT+AGG - chr2.1:2180552-2180571 None:intergenic 35.0%
TCTCATAGACTCGTAACATA+AGG + chr2.1:2180353-2180372 MS.gene36215:intron 35.0%
TGAACCTTTGAACATACCAA+GGG + chr2.1:2180499-2180518 MS.gene36215:intron 35.0%
TGTGGGGTTATCATCAATTT+AGG + chr2.1:2178376-2178395 MS.gene36215:intron 35.0%
TTAATTACACGATGCACGAT+CGG - chr2.1:2179386-2179405 None:intergenic 35.0%
TTGAACCTTTGAACATACCA+AGG + chr2.1:2180498-2180517 MS.gene36215:intron 35.0%
TTTGGTACCTACATTGATCT+GGG + chr2.1:2178185-2178204 MS.gene36215:intron 35.0%
! AAGCATTTAGAGTCTCAAAC+AGG - chr2.1:2179995-2180014 None:intergenic 35.0%
! ACCAACAGATTTTGTCAGTA+AGG - chr2.1:2179322-2179341 None:intergenic 35.0%
! AGCAAACAAACCTTGATGAT+AGG - chr2.1:2180688-2180707 None:intergenic 35.0%
! ATATTCTCATTGGTGCTTTG+GGG + chr2.1:2180948-2180967 MS.gene36215:CDS 35.0%
! ATGATAACACAATAGGTTGG+CGG - chr2.1:2180711-2180730 None:intergenic 35.0%
! ATTCAAGGTTTTTCGTGTTG+TGG + chr2.1:2178404-2178423 MS.gene36215:intron 35.0%
! CATAAGCAAACCTTGATGAT+AGG - chr2.1:2180780-2180799 None:intergenic 35.0%
! CTATCATCAAGGTTTGCTTA+TGG + chr2.1:2180778-2180797 MS.gene36215:intron 35.0%
! GTATATTCTCATTGGTGCTT+TGG + chr2.1:2180946-2180965 MS.gene36215:intron 35.0%
! GTTTTTCGTGTTGTGGTTTA+TGG + chr2.1:2178411-2178430 MS.gene36215:intron 35.0%
! TCTAATGTTAAGGGCATGTT+TGG + chr2.1:2178495-2178514 MS.gene36215:intron 35.0%
! TTACGTCTGCACTGATAATA+TGG + chr2.1:2178891-2178910 MS.gene36215:CDS 35.0%
!! CTTTAAGGATTTTGATGAGG+GGG + chr2.1:2178458-2178477 MS.gene36215:intron 35.0%
!!! TGAATATTGGTTTTTGCAGG+GGG + chr2.1:2179127-2179146 MS.gene36215:intron 35.0%
!!! TGTATTTTGCTGTTTTTGGC+AGG + chr2.1:2180229-2180248 MS.gene36215:intron 35.0%
AAGTGACAACTTGTGGAAAC+TGG + chr2.1:2179878-2179897 MS.gene36215:intron 40.0%
ACACATAATTGTCTTCTGGC+TGG + chr2.1:2179531-2179550 MS.gene36215:intron 40.0%
ACATTATGGGTAGAGCTGTT+GGG + chr2.1:2180317-2180336 MS.gene36215:CDS 40.0%
ACATTGTGAACTGATGCCAT+TGG + chr2.1:2179789-2179808 MS.gene36215:intron 40.0%
ACCAGAGGTTCAAAAAGTGA+AGG - chr2.1:2179820-2179839 None:intergenic 40.0%
ACGGATCTGAAGAGATTTGA+TGG - chr2.1:2178070-2178089 None:intergenic 40.0%
AGCCAGAAGACAATTATGTG+TGG - chr2.1:2179532-2179551 None:intergenic 40.0%
AGTGGAAAATCATAGCCCAT+TGG - chr2.1:2180826-2180845 None:intergenic 40.0%
ATAACAACTATGGGGATGAC+AGG + chr2.1:2180254-2180273 MS.gene36215:CDS 40.0%
CAAACTGTAGGAATTAGGGT+AGG - chr2.1:2180540-2180559 None:intergenic 40.0%
CAGGTAGTGACTATGTTGAT+AGG - chr2.1:2179714-2179733 None:intergenic 40.0%
CATTTGCAAGTGACAACTTG+TGG + chr2.1:2179871-2179890 MS.gene36215:intron 40.0%
GAGCTTACCAACCTTGATTT+GGG + chr2.1:2179663-2179682 MS.gene36215:intron 40.0%
GATCGTGCATCGTGTAATTA+AGG + chr2.1:2179385-2179404 MS.gene36215:CDS 40.0%
GTACATGAAAGAGGAGATAC+CGG + chr2.1:2180028-2180047 MS.gene36215:CDS 40.0%
TAATCTACATAGGCCCTGTT+TGG - chr2.1:2178789-2178808 None:intergenic 40.0%
TACATGAAAGAGGAGATACC+GGG + chr2.1:2180029-2180048 MS.gene36215:CDS 40.0%
TGAGCTTACCAACCTTGATT+TGG + chr2.1:2179662-2179681 MS.gene36215:intron 40.0%
TGCTTGTATTTGTCAATGGC+AGG + chr2.1:2180617-2180636 MS.gene36215:intron 40.0%
TGGCAGGAGATAACAACTAT+GGG + chr2.1:2180245-2180264 MS.gene36215:intron 40.0%
TTGGCAGGAGATAACAACTA+TGG + chr2.1:2180244-2180263 MS.gene36215:intron 40.0%
! CGTTGTTCTTTCTGGAAGTA+TGG + chr2.1:2178955-2178974 MS.gene36215:CDS 40.0%
! GTCTGCACTGATAATATGGA+AGG + chr2.1:2178895-2178914 MS.gene36215:CDS 40.0%
! TCTTTCTGGAAGTATGGAAC+CGG + chr2.1:2178961-2178980 MS.gene36215:CDS 40.0%
! TGCTGAATGTGACTTTGAGA+CGG + chr2.1:2179460-2179479 MS.gene36215:intron 40.0%
! TGTCTTCTGGCTGGAATATT+AGG + chr2.1:2179540-2179559 MS.gene36215:intron 40.0%
! TGTTAAGGGCATGTTTGGAT+TGG + chr2.1:2178500-2178519 MS.gene36215:intron 40.0%
! TTTTCCTTGTGTTCTGCTTC+AGG + chr2.1:2178860-2178879 MS.gene36215:intron 40.0%
!! GAGGTTGATGTTCTCACAAA+AGG + chr2.1:2180052-2180071 MS.gene36215:CDS 40.0%
!! GTGGGTCCATTTTTGTATCT+GGG + chr2.1:2179687-2179706 MS.gene36215:intron 40.0%
!! GTTGACTTGAGAGAGAAAAG+TGG - chr2.1:2180844-2180863 None:intergenic 40.0%
!! TGTGGGTCCATTTTTGTATC+TGG + chr2.1:2179686-2179705 MS.gene36215:intron 40.0%
!!! TCCTTCACTTTTTGAACCTC+TGG + chr2.1:2179816-2179835 MS.gene36215:intron 40.0%
AAGTCGACCCAGATCAATGT+AGG - chr2.1:2178195-2178214 None:intergenic 45.0%
ACATGAAAGAGGAGATACCG+GGG + chr2.1:2180030-2180049 MS.gene36215:CDS 45.0%
ACCTTCTCATGTTAGAGCCT+TGG + chr2.1:2179493-2179512 MS.gene36215:intron 45.0%
AGTAGTTCAAACAGCACCAG+AGG - chr2.1:2179835-2179854 None:intergenic 45.0%
ATTGTCACCCAGCCAACATA+AGG - chr2.1:2180649-2180668 None:intergenic 45.0%
CAAATCTCTTCAGATCCGTC+AGG + chr2.1:2178071-2178090 MS.gene36215:CDS 45.0%
CAACAGCTCTACCCATAATG+TGG - chr2.1:2180318-2180337 None:intergenic 45.0%
CAACGCATGAAGATCAATCC+AGG - chr2.1:2179954-2179973 None:intergenic 45.0%
CACATTATGGGTAGAGCTGT+TGG + chr2.1:2180316-2180335 MS.gene36215:CDS 45.0%
CCAGAAAGAACAACGACAAC+AGG - chr2.1:2178950-2178969 None:intergenic 45.0%
CCTGTTGTCGTTGTTCTTTC+TGG + chr2.1:2178947-2178966 MS.gene36215:CDS 45.0%
GAAAAAGTTGTTCACGGTGC+TGG + chr2.1:2179562-2179581 MS.gene36215:intron 45.0%
GGCAGGAGATAACAACTATG+GGG + chr2.1:2180246-2180265 MS.gene36215:intron 45.0%
GGGAAAGAGAAAACTGACCA+AGG - chr2.1:2178116-2178135 None:intergenic 45.0%
GTGGATCATCTCATGATCCA+AGG - chr2.1:2179513-2179532 None:intergenic 45.0%
! CTTTCTGGAAGTATGGAACC+GGG + chr2.1:2178962-2178981 MS.gene36215:CDS 45.0%
! GTTCCTACCTTATGTTGGCT+GGG + chr2.1:2180639-2180658 MS.gene36215:CDS 45.0%
! TCCAAGGCTCTAACATGAGA+AGG - chr2.1:2179497-2179516 None:intergenic 45.0%
! TTGCTTACACGTTTGAAGCC+CGG - chr2.1:2178983-2179002 None:intergenic 45.0%
!! AAGGCATTGATGTGCATCAC+TGG + chr2.1:2178914-2178933 MS.gene36215:CDS 45.0%
!! ACCAACCTTGATTTGGGTGT+GGG + chr2.1:2179669-2179688 MS.gene36215:intron 45.0%
!! CTGCAAAGGCACCACATTAT+GGG + chr2.1:2180304-2180323 MS.gene36215:CDS 45.0%
!! TACCAACCTTGATTTGGGTG+TGG + chr2.1:2179668-2179687 MS.gene36215:intron 45.0%
!! TGCTTGAAGATACCGACTTG+TGG + chr2.1:2180460-2180479 MS.gene36215:intron 45.0%
!! ATATAATAATTGATTAAAAT+TGG - chr2.1:2178299-2178318 None:intergenic 5.0%
!!! AATTTTAATCAATTATTATA+TGG + chr2.1:2178298-2178317 MS.gene36215:intron 5.0%
!!! ATTTTAATCAATTATTATAT+GGG + chr2.1:2178299-2178318 MS.gene36215:intron 5.0%
!!! TTTTTATTTTTGTATTTTTA+GGG + chr2.1:2178258-2178277 MS.gene36215:intron 5.0%
!!! TTTTTTATTTTTGTATTTTT+AGG + chr2.1:2178257-2178276 MS.gene36215:intron 5.0%
ACAATCTCTCCTGCGCGAAT+TGG - chr2.1:2179182-2179201 None:intergenic 50.0%
ACCCACACCCAAATCAAGGT+TGG - chr2.1:2179673-2179692 None:intergenic 50.0%
AGTAAGGATCCAATTCGCGC+AGG + chr2.1:2179170-2179189 MS.gene36215:CDS 50.0%
ATGGACCCACACCCAAATCA+AGG - chr2.1:2179677-2179696 None:intergenic 50.0%
CATGCCTGAAGCAGAACACA+AGG - chr2.1:2178867-2178886 None:intergenic 50.0%
GACAGGCTACTGTATGCTCA+TGG + chr2.1:2180271-2180290 MS.gene36215:CDS 50.0%
GGCAGGTTCCTACCTTATGT+TGG + chr2.1:2180634-2180653 MS.gene36215:intron 50.0%
GGTTCCTACCTTATGTTGGC+TGG + chr2.1:2180638-2180657 MS.gene36215:intron 50.0%
TCACCCAGCCAACATAAGGT+AGG - chr2.1:2180645-2180664 None:intergenic 50.0%
TCGGAATCTCTCGTCCCTAA+AGG - chr2.1:2179367-2179386 None:intergenic 50.0%
TGTATGCTCATGGCCAGCTT+TGG + chr2.1:2180281-2180300 MS.gene36215:CDS 50.0%
TGTGAGAACATCAACCTCCC+CGG - chr2.1:2180050-2180069 None:intergenic 50.0%
TTGATGAGGGGGAGATTGTG+AGG + chr2.1:2178469-2178488 MS.gene36215:intron 50.0%
! AAGTTGTTCACGGTGCTGGA+TGG + chr2.1:2179566-2179585 MS.gene36215:intron 50.0%
!! GCTGCAAAGGCACCACATTA+TGG + chr2.1:2180303-2180322 MS.gene36215:CDS 50.0%
TGAAAGAGGAGATACCGGGG+AGG + chr2.1:2180033-2180052 MS.gene36215:CDS 55.0%
! ATGGCCAGCTTTGGCTGCAA+AGG + chr2.1:2180290-2180309 MS.gene36215:CDS 55.0%
! TGTTCACGGTGCTGGATGGA+GGG + chr2.1:2179570-2179589 MS.gene36215:intron 55.0%
! TTGTTCACGGTGCTGGATGG+AGG + chr2.1:2179569-2179588 MS.gene36215:intron 55.0%
CAAGGCTAACAGCCTGAGCG+AGG - chr2.1:2178098-2178117 None:intergenic 60.0%
GGTGCCTTTGCAGCCAAAGC+TGG - chr2.1:2180297-2180316 None:intergenic 60.0%
! CTCGCTCAGGCTGTTAGCCT+TGG + chr2.1:2178096-2178115 MS.gene36215:CDS 60.0%
CAGCCTGAGCGAGGACCTGA+CGG - chr2.1:2178089-2178108 None:intergenic 65.0%
GATCCGTCAGGTCCTCGCTC+AGG + chr2.1:2178083-2178102 MS.gene36215:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 2178039 2180997 2178039 ID=MS.gene36215
chr2.1 mRNA 2178039 2180997 2178039 ID=MS.gene36215.t1;Parent=MS.gene36215
chr2.1 exon 2178039 2178117 2178039 ID=MS.gene36215.t1.exon1;Parent=MS.gene36215.t1
chr2.1 CDS 2178039 2178117 2178039 ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1 exon 2178882 2178994 2178882 ID=MS.gene36215.t1.exon2;Parent=MS.gene36215.t1
chr2.1 CDS 2178882 2178994 2178882 ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1 exon 2179146 2179217 2179146 ID=MS.gene36215.t1.exon3;Parent=MS.gene36215.t1
chr2.1 CDS 2179146 2179217 2179146 ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1 exon 2179371 2179406 2179371 ID=MS.gene36215.t1.exon4;Parent=MS.gene36215.t1
chr2.1 CDS 2179371 2179406 2179371 ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1 exon 2180028 2180073 2180028 ID=MS.gene36215.t1.exon5;Parent=MS.gene36215.t1
chr2.1 CDS 2180028 2180073 2180028 ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1 exon 2180251 2180338 2180251 ID=MS.gene36215.t1.exon6;Parent=MS.gene36215.t1
chr2.1 CDS 2180251 2180338 2180251 ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1 exon 2180639 2180696 2180639 ID=MS.gene36215.t1.exon7;Parent=MS.gene36215.t1
chr2.1 CDS 2180639 2180696 2180639 ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
chr2.1 exon 2180947 2180997 2180947 ID=MS.gene36215.t1.exon8;Parent=MS.gene36215.t1
chr2.1 CDS 2180947 2180997 2180947 ID=cds.MS.gene36215.t1;Parent=MS.gene36215.t1
Gene Sequence

>MS.gene36215

ATGGGTTTCGTTGGTGACACTGTCGATTCCATCAAATCTCTTCAGATCCGTCAGGTCCTCGCTCAGGCTGTTAGCCTTGGTCAGTTTTCTCTTTCCCCAATTCAATTCAACAAAAAAAAAACTATCTTTACATTATAGAATTTCTATTTGGTACCTACATTGATCTGGGTCGACTTTAAAATCATCGAATTTTGAAGTTTTTGATGAAAAATCTTCACTTTTTTATTTTTGTATTTTTAGGGTTTATGCCAAGAATTCCAATTTTAATCAATTATTATATGGGGTTTTGTCAAAAAATGAATTATTATATGGGGTATCATTTTTTTCAATTTTTGGATGTGGGGTTATCATCAATTTAGGTTATAATTCAAGGTTTTTCGTGTTGTGGTTTATGGGTTTATTGATAAATGGTTGTTTATCTTTAAGGATTTTGATGAGGGGGAGATTGTGAGGAATTCTAATGTTAAGGGCATGTTTGGATTGGCTTATTTGAGTTTATCCAATCATATAAGTCTGTGAGACTGTTTGGAAGAGCTTATGAAAACAGCTTATGACATTTGTTCATAAGCTGTTTTTAACTTGTTTTTCATGAGTTCTCGAAGATTGCTTTTGAAAACAGCTTATAGCTTATACGAAAACTATTTTTTTATTTAACTTTATTTTATCTTTTTGGCTATAGAAATAGCTTATACATAAGCACTTCTCACGATAAGCTTCTGTGCTATAATCTATAAACAAACTGTTAATCCAAACAGGGCCTATGTAGATTATATGAACACCATAGAATTGCTTCCAGATCATTGTTTTATTCATAGAACTTGTTTTCCTTGTGTTCTGCTTCAGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCATCACTGGCAGTGAATCTCCTGTTGTCGTTGTTCTTTCTGGAAGTATGGAACCGGGCTTCAAACGTGTAAGCAAATCTTATGCATCGCAGCCTTAGTAATTCTGTATCTAATATTTTTATACAATAACAGTACAGTGTCATCAAGAAGAGACAAGCTGCATATATATATTCAAATCGTCTGTTTCTTTCTGTTGCTAATGAATATTGGTTTTTGCAGGGGGACATCTTGTTCTTACACATGAGTAAGGATCCAATTCGCGCAGGAGAGATTGTTGTATTTAATATAGATGTAAGTTCACCTCTCTGTTGTATATCCTGTATGTTTTACTTACTTCAATTCGTATCTATATTTCAGCACTTTCCGATTCTTTGTATTCTACTTGATACTTTCCTTACTGACAAAATCTGTTGGTATGTACCCTTGTTTTTTTTTTTCCTTTAGGGACGAGAGATTCCGATCGTGCATCGTGTAATTAAGGTAAGCTCAGTATTTTGGTTGAATTTAGTATGTTCTTTCATCAGTTGCATCATTGCTGAATGTGACTTTGAGACGGAGTGCTCTGCACCTTCTCATGTTAGAGCCTTGGATCATGAGATGATCCACACATAATTGTCTTCTGGCTGGAATATTAGGAAAAAGTTGTTCACGGTGCTGGATGGAGGGATACATTTCATTTCTTGAATGTGTAGGGATACCTATTCAAACTGTAACTACATAATTTACATGACAGAATGAGCTTACCAACCTTGATTTGGGTGTGGGTCCATTTTTGTATCTGGGTCCTATCAACATAGTCACTACCTGCTTTTAGTTCTTATTTATCATAGCTCAATAAAAAAATAAATATATAAGGATCGATACATTGTGAACTGATGCCATTGGAAGTTCCTTCACTTTTTGAACCTCTGGTGCTGTTTGAACTACTTTCATCAATATCTTGTCATTTGCAAGTGACAACTTGTGGAAACTGGAGAGTGCAGAGTATCACTAATCTGAGAAATAATGGATAAGATTGATATTACCTGGATTGATCTTCATGCGTTGAGTGATAGTTAAGATTGTCCTGTTTGAGACTCTAAATGCTTGATCATTTTGTAGGTACATGAAAGAGGAGATACCGGGGAGGTTGATGTTCTCACAAAAGGTAGTGACTATAACTGAAATACTGACTACTGAATTTACGCTCTACATATACAAAACCCAATCTCAGTAGTGAATTTGATCCAATATTATATTTCCTTTTTCTCGTTTAGTTGTCAATTTATATAGTGGTTGTCTGATAATGTAACACCCGTCTCTTGTATTTTGCTGTTTTTGGCAGGAGATAACAACTATGGGGATGACAGGCTACTGTATGCTCATGGCCAGCTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCTGTTGGGTATGTATAGCATTTCTCATAGACTCGTAACATAAGGATTAAGGTTATATGTTTTTAAGTATTAAGTCTTGAACTATAATAAGAATGAGATCTGTGATATTAAGGTATTATGCATGGTTTATGCTTGAAGATACCGACTTGTGGAATATCTAACACTTCTTGAACCTTTGAACATACCAAGGGTTTATCCTAATTTATCCTACCCTAATTCCTACAGTTTGCATTCCTATAGAACAAAGCATGTTTTGAAATCATTTTATGACATTCTGTGTTAACATTGCTTGTATTTGTCAATGGCAGGTTCCTACCTTATGTTGGCTGGGTGACAATTATCATGACTGAAAAACCTATCATCAAGGTTTGTTTGCTCCGCCAACCTATTGTGTTATCATTTAGCTGAAGTTGGTTGTTTTACATTTATGTATGTTTATGGTGAAACCTATCATCAAGGTTTGCTTATGGTGAAACCTATCATGATTTTTAACCAATGGGCTATGATTTTCCACTTTTCTCTCTCAAGTCAACTCCTTACATTAGAGCAAGTAGATCCTATAATTTGAATTGCAACAAGTATGAAGTGTGCTAATGCTGTCTCTTATGTTTTGCAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCAAAAGAGTAA
Protein sequence

>MS.gene36215.t1

MGFVGDTVDSIKSLQIRQVLAQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNIDGREIPIVHRVIKVHERGDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKE