Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36313.t1 | XP_003597750.1 | 99.7 | 309 | 1 | 0 | 1 | 309 | 1 | 309 | 6.10E-170 | 606.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36313.t1 | G7II20 | 99.7 | 309 | 1 | 0 | 1 | 309 | 1 | 309 | 4.4e-170 | 606.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049404 | MS.gene36313 | 0.824179 | 9.29E-54 | -1.69E-46 |
MS.gene049501 | MS.gene36313 | 0.800605 | 1.33E-48 | -1.69E-46 |
MS.gene049850 | MS.gene36313 | 0.801177 | 1.02E-48 | -1.69E-46 |
MS.gene050156 | MS.gene36313 | 0.810798 | 9.64E-51 | -1.69E-46 |
MS.gene051247 | MS.gene36313 | 0.807168 | 5.77E-50 | -1.69E-46 |
MS.gene051388 | MS.gene36313 | 0.828759 | 7.52E-55 | -1.69E-46 |
MS.gene051719 | MS.gene36313 | 0.808723 | 2.69E-50 | -1.69E-46 |
MS.gene051720 | MS.gene36313 | 0.8054 | 1.36E-49 | -1.69E-46 |
MS.gene052611 | MS.gene36313 | 0.821021 | 5.04E-53 | -1.69E-46 |
MS.gene053054 | MS.gene36313 | -0.814864 | 1.24E-51 | -1.69E-46 |
MS.gene053144 | MS.gene36313 | 0.820245 | 7.59E-53 | -1.69E-46 |
MS.gene054584 | MS.gene36313 | 0.810143 | 1.33E-50 | -1.69E-46 |
MS.gene054801 | MS.gene36313 | 0.805127 | 1.55E-49 | -1.69E-46 |
MS.gene055357 | MS.gene36313 | 0.813854 | 2.07E-51 | -1.69E-46 |
MS.gene055725 | MS.gene36313 | 0.800499 | 1.40E-48 | -1.69E-46 |
MS.gene055818 | MS.gene36313 | 0.814911 | 1.21E-51 | -1.69E-46 |
MS.gene056050 | MS.gene36313 | 0.857033 | 2.15E-62 | -1.69E-46 |
MS.gene056173 | MS.gene36313 | 0.803238 | 3.84E-49 | -1.69E-46 |
MS.gene056366 | MS.gene36313 | 0.86099 | 1.41E-63 | -1.69E-46 |
MS.gene056543 | MS.gene36313 | 0.800725 | 1.26E-48 | -1.69E-46 |
MS.gene056553 | MS.gene36313 | 0.81103 | 8.58E-51 | -1.69E-46 |
MS.gene056792 | MS.gene36313 | 0.818076 | 2.37E-52 | -1.69E-46 |
MS.gene058625 | MS.gene36313 | 0.806198 | 9.24E-50 | -1.69E-46 |
MS.gene059015 | MS.gene36313 | 0.818851 | 1.58E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36313.t1 | MTR_2g101870 | 99.676 | 309 | 1 | 0 | 1 | 309 | 1 | 309 | 0.0 | 635 |
MS.gene36313.t1 | MTR_6g087880 | 52.885 | 312 | 135 | 6 | 2 | 308 | 1 | 305 | 4.16e-103 | 304 |
MS.gene36313.t1 | MTR_6g081930 | 39.041 | 292 | 152 | 5 | 22 | 309 | 25 | 294 | 6.51e-62 | 198 |
MS.gene36313.t1 | MTR_8g106580 | 41.346 | 312 | 163 | 7 | 2 | 309 | 1 | 296 | 1.93e-60 | 195 |
MS.gene36313.t1 | MTR_4g075730 | 35.737 | 319 | 178 | 10 | 6 | 309 | 12 | 318 | 2.70e-49 | 167 |
MS.gene36313.t1 | MTR_8g086610 | 33.708 | 178 | 109 | 5 | 137 | 309 | 106 | 279 | 1.85e-31 | 119 |
MS.gene36313.t1 | MTR_4g075730 | 36.842 | 209 | 114 | 5 | 16 | 216 | 24 | 222 | 2.84e-30 | 114 |
MS.gene36313.t1 | MTR_0154s0010 | 41.176 | 136 | 77 | 3 | 176 | 309 | 1 | 135 | 1.16e-29 | 110 |
MS.gene36313.t1 | MTR_3g037650 | 31.667 | 180 | 111 | 4 | 115 | 293 | 88 | 256 | 2.35e-21 | 91.7 |
MS.gene36313.t1 | MTR_3g033530 | 23.301 | 309 | 197 | 8 | 27 | 297 | 29 | 335 | 7.27e-14 | 71.6 |
MS.gene36313.t1 | MTR_4g094800 | 42.609 | 115 | 50 | 5 | 4 | 106 | 14 | 124 | 3.36e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36313.t1 | AT1G45688 | 43.925 | 321 | 146 | 7 | 2 | 289 | 1 | 320 | 1.06e-69 | 220 |
MS.gene36313.t1 | AT5G42860 | 40.968 | 310 | 145 | 5 | 2 | 287 | 1 | 296 | 1.79e-65 | 208 |
MS.gene36313.t1 | AT3G24605 | 39.806 | 309 | 161 | 7 | 5 | 306 | 6 | 296 | 4.36e-64 | 204 |
MS.gene36313.t1 | AT3G24600 | 41.290 | 310 | 169 | 9 | 1 | 306 | 1 | 301 | 2.35e-56 | 184 |
MS.gene36313.t1 | AT1G45688 | 45.783 | 249 | 118 | 8 | 2 | 235 | 1 | 247 | 1.53e-52 | 173 |
MS.gene36313.t1 | AT4G35170 | 35.789 | 285 | 159 | 9 | 14 | 287 | 6 | 277 | 3.40e-42 | 147 |
MS.gene36313.t1 | AT2G41990 | 34.783 | 299 | 171 | 8 | 2 | 293 | 1 | 282 | 3.06e-39 | 140 |
MS.gene36313.t1 | AT3G08490 | 23.308 | 266 | 178 | 4 | 27 | 291 | 11 | 251 | 1.13e-13 | 70.5 |
Find 65 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTAATAAGATTCCCCTTTA+TGG | 0.167603 | 2.2:-1887874 | MS.gene36313:CDS |
GAATTCTTCTTGAATTTAAT+AGG | 0.271825 | 2.2:+1887688 | None:intergenic |
TCTCCTTCACATCCTTCTTT+TGG | 0.272863 | 2.2:-1889274 | MS.gene36313:CDS |
TCCATAGGACTGTTTGATAT+TGG | 0.301627 | 2.2:+1889298 | None:intergenic |
TCCGGTTTGCGAAACTGTTA+TGG | 0.302870 | 2.2:+1887840 | None:intergenic |
AGTAGAAAGAGGAATGATAA+AGG | 0.322695 | 2.2:-1889181 | MS.gene36313:CDS |
ACAATACGGTGACTCTTTCT+TGG | 0.322732 | 2.2:+1887913 | None:intergenic |
ACATAGTATACAGGTCTCTT+TGG | 0.336582 | 2.2:+1889379 | None:intergenic |
GGGTGCTAGCAGGCCTTTCA+AGG | 0.389621 | 2.2:-1889020 | MS.gene36313:CDS |
AGGTGATGTGGTGGGGAAAC+TGG | 0.391294 | 2.2:-1887773 | MS.gene36313:CDS |
TAAGGAAATCACTTGTCCTT+TGG | 0.400348 | 2.2:-1887734 | MS.gene36313:CDS |
GGTCTCTTTGGAGATCTTGA+TGG | 0.410924 | 2.2:+1889391 | None:intergenic |
CCTTTGGTTATCAATTCTGC+TGG | 0.414114 | 2.2:-1887718 | MS.gene36313:CDS |
CCATCATGTGAATCTCTTGA+AGG | 0.414191 | 2.2:+1889349 | None:intergenic |
CAGTACATAATCTATATGTT+TGG | 0.415741 | 2.2:-1888248 | MS.gene36313:CDS |
TGATCATTTGGGGTGCTAGC+AGG | 0.416591 | 2.2:-1889030 | MS.gene36313:CDS |
AGTACATAATCTATATGTTT+GGG | 0.418371 | 2.2:-1888247 | MS.gene36313:CDS |
TGGTTGATCCAGCTCCATAA+AGG | 0.434697 | 2.2:+1887860 | None:intergenic |
AAGTGCTACTTCAACGCTTC+CGG | 0.439457 | 2.2:+1887822 | None:intergenic |
ACCATAACAGTTTCGCAAAC+CGG | 0.441237 | 2.2:-1887841 | MS.gene36313:CDS |
AAGATTCCCCTTTATGGAGC+TGG | 0.446069 | 2.2:-1887868 | MS.gene36313:CDS |
GGTTGATCCAGCTCCATAAA+GGG | 0.452029 | 2.2:+1887861 | None:intergenic |
CCGTATTGTATCAGTGAACT+TGG | 0.454362 | 2.2:-1887899 | MS.gene36313:CDS |
TCCAATATCAAACAGTCCTA+TGG | 0.455908 | 2.2:-1889299 | MS.gene36313:CDS |
GGAGATCTTGATGGTGAAGA+TGG | 0.477710 | 2.2:+1889400 | None:intergenic |
GTAGAAAGAGGAATGATAAA+GGG | 0.480419 | 2.2:-1889180 | MS.gene36313:CDS |
GGTAAGGACAAGGCATCATA+AGG | 0.484890 | 2.2:-1887752 | MS.gene36313:CDS |
GGACTTTGTACATAGTATAC+AGG | 0.503085 | 2.2:+1889370 | None:intergenic |
CTCGAGTGACGGCCAAAAGA+AGG | 0.504004 | 2.2:+1889262 | None:intergenic |
ACAGTAATTTCTGCCTTGAA+AGG | 0.509429 | 2.2:+1889007 | None:intergenic |
CCTTCAAGAGATTCACATGA+TGG | 0.519036 | 2.2:-1889349 | MS.gene36313:CDS |
AGGTTCTTATCGTGAATTTG+AGG | 0.521037 | 2.2:-1889128 | MS.gene36313:CDS |
GAAGGAAAGGTAGTAGAAAG+AGG | 0.523236 | 2.2:-1889192 | MS.gene36313:CDS |
CAAGGCAGAAATTACTGTCA+AGG | 0.524450 | 2.2:-1889002 | MS.gene36313:intron |
TCAGATATCAGTATCGCAAC+CGG | 0.536332 | 2.2:-1888096 | MS.gene36313:CDS |
CCAAGTTCACTGATACAATA+CGG | 0.554928 | 2.2:+1887899 | None:intergenic |
GATCGCGAGGTGATGTGGTG+GGG | 0.563802 | 2.2:-1887780 | MS.gene36313:CDS |
CGATCGCGAGGTGATGTGGT+GGG | 0.564068 | 2.2:-1887781 | MS.gene36313:CDS |
TGATCGGTGAAGTGTGGACA+TGG | 0.570257 | 2.2:+1888130 | None:intergenic |
AGGTCATCTTCAGGAAGGAA+AGG | 0.572600 | 2.2:-1889205 | MS.gene36313:CDS |
CGAGAAACTCTTCTGCTAGT+CGG | 0.574468 | 2.2:-1889243 | MS.gene36313:CDS |
TAAGAATGATCTTACCTCAC+CGG | 0.575350 | 2.2:+1888077 | None:intergenic |
ATGTGGTGGGGAAACTGGTA+AGG | 0.575803 | 2.2:-1887768 | MS.gene36313:CDS |
TGTGGTGTTATACTTGAAGA+AGG | 0.580795 | 2.2:-1889148 | MS.gene36313:CDS |
TCTGAGTAAACAAGATTGAT+CGG | 0.590368 | 2.2:+1888114 | None:intergenic |
CAGAAGAGTTTCTCGAGTGA+CGG | 0.597006 | 2.2:+1889251 | None:intergenic |
AATCCGATCGCGAGGTGATG+TGG | 0.597666 | 2.2:-1887785 | MS.gene36313:CDS |
ATTGTATCAGTGAACTTGGA+AGG | 0.600518 | 2.2:-1887895 | MS.gene36313:CDS |
GGATGTGAAGGAGACTCCAT+AGG | 0.604242 | 2.2:+1889283 | None:intergenic |
CGGCCAAAAGAAGGATGTGA+AGG | 0.605614 | 2.2:+1889271 | None:intergenic |
ACATAATCTATATGTTTGGG+AGG | 0.606954 | 2.2:-1888244 | MS.gene36313:CDS |
TGATATTGGAGTAGCTTGCA+TGG | 0.609840 | 2.2:+1889312 | None:intergenic |
CAAGATTGATCGGTGAAGTG+TGG | 0.610457 | 2.2:+1888124 | None:intergenic |
CCACCACATCACCTCGCGAT+CGG | 0.610908 | 2.2:+1887782 | None:intergenic |
CCGATCGCGAGGTGATGTGG+TGG | 0.611667 | 2.2:-1887782 | MS.gene36313:CDS |
TGGGGAAACTGGTAAGGACA+AGG | 0.623482 | 2.2:-1887762 | MS.gene36313:CDS |
CCAGCAGAATTGATAACCAA+AGG | 0.632275 | 2.2:+1887718 | None:intergenic |
AAGTTTGAAATCCGATCGCG+AGG | 0.634220 | 2.2:-1887793 | MS.gene36313:CDS |
GTTGATCCAGCTCCATAAAG+GGG | 0.651471 | 2.2:+1887862 | None:intergenic |
TCAAGTATAACACCACACTC+AGG | 0.656313 | 2.2:+1889154 | None:intergenic |
GATAAAGGGTGGCCTGAGTG+TGG | 0.658555 | 2.2:-1889166 | MS.gene36313:CDS |
CATAATCTATATGTTTGGGA+GGG | 0.659908 | 2.2:-1888243 | MS.gene36313:CDS |
TATCAGTATCGCAACCGGTG+AGG | 0.671558 | 2.2:-1888091 | MS.gene36313:intron |
GAAAGAGGAATGATAAAGGG+TGG | 0.678134 | 2.2:-1889177 | MS.gene36313:CDS |
TGGGAGGGTACAGACCACAC+AGG | 0.759316 | 2.2:-1888228 | MS.gene36313:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATGAAGAATAATAATAC+AGG | + | chr2.2:1888687-1888706 | None:intergenic | 15.0% |
!! | TAACAATTATAAAATCAGTT+TGG | - | chr2.2:1888307-1888326 | MS.gene36313:intron | 15.0% |
!! | AACTTAAGCTTAATGTATAA+AGG | + | chr2.2:1888375-1888394 | None:intergenic | 20.0% |
!! | AGACTTAAGAATAACAAAAT+TGG | + | chr2.2:1888141-1888160 | None:intergenic | 20.0% |
!! | AGTACATAATCTATATGTTT+GGG | - | chr2.2:1888867-1888886 | MS.gene36313:intron | 20.0% |
!! | GAATTCTTCTTGAATTTAAT+AGG | + | chr2.2:1889429-1889448 | None:intergenic | 20.0% |
!! | TTAATTAATAATGCAGAGTT+TGG | - | chr2.2:1888843-1888862 | MS.gene36313:intron | 20.0% |
!! | TTGAAAGTTAAAAATACAGT+TGG | - | chr2.2:1888580-1888599 | MS.gene36313:intron | 20.0% |
!!! | AACTGTATTTTTAACTTTCA+AGG | + | chr2.2:1888581-1888600 | None:intergenic | 20.0% |
!!! | AATAGTTTAACTTTTCTTTG+TGG | - | chr2.2:1888414-1888433 | MS.gene36313:intron | 20.0% |
!!! | AATTCAAGTAACTTTTTTCT+TGG | - | chr2.2:1889116-1889135 | MS.gene36313:CDS | 20.0% |
!!! | AATTTTGTTTCAATCACTTT+GGG | - | chr2.2:1888721-1888740 | MS.gene36313:intron | 20.0% |
!!! | TAATTGTCAGAATTTTTGTT+GGG | + | chr2.2:1888915-1888934 | None:intergenic | 20.0% |
!!! | TTAATTGTCAGAATTTTTGT+TGG | + | chr2.2:1888916-1888935 | None:intergenic | 20.0% |
! | CAAAGTGATTGAAACAAAAT+TGG | + | chr2.2:1888722-1888741 | None:intergenic | 25.0% |
! | CAGTACATAATCTATATGTT+TGG | - | chr2.2:1888866-1888885 | MS.gene36313:intron | 25.0% |
! | TTAATATCAGCCAACTAAAA+TGG | + | chr2.2:1888536-1888555 | None:intergenic | 25.0% |
!! | CAATACTACTTAATTTTCCA+AGG | + | chr2.2:1888807-1888826 | None:intergenic | 25.0% |
!! | CTTTTGTACCAAAAAAGAAA+TGG | - | chr2.2:1888753-1888772 | MS.gene36313:intron | 25.0% |
!!! | CAATTTTGTTTCAATCACTT+TGG | - | chr2.2:1888720-1888739 | MS.gene36313:intron | 25.0% |
!!! | TGTGTTTTGTTTGATCATTT+GGG | - | chr2.2:1888073-1888092 | MS.gene36313:intron | 25.0% |
!!! | TTCTTTTTTGGTACAAAAGA+GGG | + | chr2.2:1888752-1888771 | None:intergenic | 25.0% |
!!! | TTGCTATTTATAATGTTCCT+TGG | - | chr2.2:1888787-1888806 | MS.gene36313:intron | 25.0% |
!!! | TTTCTTTTTTGGTACAAAAG+AGG | + | chr2.2:1888753-1888772 | None:intergenic | 25.0% |
AACTAAAATGGATGCATAGT+AGG | + | chr2.2:1888524-1888543 | None:intergenic | 30.0% | |
ACATAATCTATATGTTTGGG+AGG | - | chr2.2:1888870-1888889 | MS.gene36313:intron | 30.0% | |
AGTAGAAAGAGGAATGATAA+AGG | - | chr2.2:1887933-1887952 | MS.gene36313:CDS | 30.0% | |
CATAATCTATATGTTTGGGA+GGG | - | chr2.2:1888871-1888890 | MS.gene36313:intron | 30.0% | |
GTAGAAAGAGGAATGATAAA+GGG | - | chr2.2:1887934-1887953 | MS.gene36313:CDS | 30.0% | |
TCTGAGTAAACAAGATTGAT+CGG | + | chr2.2:1889003-1889022 | None:intergenic | 30.0% | |
TGATATTAACACTGACAGAA+AGG | - | chr2.2:1888547-1888566 | MS.gene36313:intron | 30.0% | |
!! | TACTATGCATCCATTTTAGT+TGG | - | chr2.2:1888523-1888542 | MS.gene36313:intron | 30.0% |
!! | TTATTTCTACAAGCTCTCTT+GGG | - | chr2.2:1888262-1888281 | MS.gene36313:intron | 30.0% |
!!! | CTGTGTTTTGTTTGATCATT+TGG | - | chr2.2:1888072-1888091 | MS.gene36313:intron | 30.0% |
!!! | GTGTTTTGTTTGATCATTTG+GGG | - | chr2.2:1888074-1888093 | MS.gene36313:intron | 30.0% |
!!! | TGCTACTACCATTTCTTTTT+TGG | + | chr2.2:1888764-1888783 | None:intergenic | 30.0% |
ACAGTAATTTCTGCCTTGAA+AGG | + | chr2.2:1888110-1888129 | None:intergenic | 35.0% | |
ACATAGTATACAGGTCTCTT+TGG | + | chr2.2:1887738-1887757 | None:intergenic | 35.0% | |
AGGTTCTTATCGTGAATTTG+AGG | - | chr2.2:1887986-1888005 | MS.gene36313:intron | 35.0% | |
ATTGTATCAGTGAACTTGGA+AGG | - | chr2.2:1889219-1889238 | MS.gene36313:CDS | 35.0% | |
CCAAGTTCACTGATACAATA+CGG | + | chr2.2:1889218-1889237 | None:intergenic | 35.0% | |
GGACTTTGTACATAGTATAC+AGG | + | chr2.2:1887747-1887766 | None:intergenic | 35.0% | |
GGTAATAAGATTCCCCTTTA+TGG | - | chr2.2:1889240-1889259 | MS.gene36313:CDS | 35.0% | |
TAAGAATGATCTTACCTCAC+CGG | + | chr2.2:1889040-1889059 | None:intergenic | 35.0% | |
TAAGGAAATCACTTGTCCTT+TGG | - | chr2.2:1889380-1889399 | MS.gene36313:CDS | 35.0% | |
TCCAATATCAAACAGTCCTA+TGG | - | chr2.2:1887815-1887834 | MS.gene36313:CDS | 35.0% | |
TCCATAGGACTGTTTGATAT+TGG | + | chr2.2:1887819-1887838 | None:intergenic | 35.0% | |
TGATGCCTTCTTCAAAAAGA+TGG | + | chr2.2:1888441-1888460 | None:intergenic | 35.0% | |
!! | CTTATTTCTACAAGCTCTCT+TGG | - | chr2.2:1888261-1888280 | MS.gene36313:intron | 35.0% |
!! | GATTGCTGTGTTTACTTTTC+TGG | - | chr2.2:1888040-1888059 | MS.gene36313:intron | 35.0% |
!! | TGTGGTGTTATACTTGAAGA+AGG | - | chr2.2:1887966-1887985 | MS.gene36313:intron | 35.0% |
!!! | TACAACCCTGCTACATTTTT+TGG | - | chr2.2:1888958-1888977 | MS.gene36313:intron | 35.0% |
!!! | TTTTTAGGTCATCTTCAGGA+AGG | - | chr2.2:1887904-1887923 | MS.gene36313:CDS | 35.0% |
ACAATACGGTGACTCTTTCT+TGG | + | chr2.2:1889204-1889223 | None:intergenic | 40.0% | |
ACCATAACAGTTTCGCAAAC+CGG | - | chr2.2:1889273-1889292 | MS.gene36313:CDS | 40.0% | |
ATAGTAGGTGCAAGTGCAAA+TGG | + | chr2.2:1888509-1888528 | None:intergenic | 40.0% | |
CAAGGCAGAAATTACTGTCA+AGG | - | chr2.2:1888112-1888131 | MS.gene36313:CDS | 40.0% | |
CCATCATGTGAATCTCTTGA+AGG | + | chr2.2:1887768-1887787 | None:intergenic | 40.0% | |
CCGTATTGTATCAGTGAACT+TGG | - | chr2.2:1889215-1889234 | MS.gene36313:CDS | 40.0% | |
CCTTCAAGAGATTCACATGA+TGG | - | chr2.2:1887765-1887784 | MS.gene36313:CDS | 40.0% | |
CCTTTGGTTATCAATTCTGC+TGG | - | chr2.2:1889396-1889415 | MS.gene36313:CDS | 40.0% | |
GAAAGAGGAATGATAAAGGG+TGG | - | chr2.2:1887937-1887956 | MS.gene36313:intron | 40.0% | |
GAAGGAAAGGTAGTAGAAAG+AGG | - | chr2.2:1887922-1887941 | MS.gene36313:CDS | 40.0% | |
GGATGCCAAAAAATGTAGCA+GGG | + | chr2.2:1888966-1888985 | None:intergenic | 40.0% | |
TCAAGTATAACACCACACTC+AGG | + | chr2.2:1887963-1887982 | None:intergenic | 40.0% | |
TCAGATATCAGTATCGCAAC+CGG | - | chr2.2:1889018-1889037 | MS.gene36313:CDS | 40.0% | |
TGGATGCCAAAAAATGTAGC+AGG | + | chr2.2:1888967-1888986 | None:intergenic | 40.0% | |
! | CCAGCAGAATTGATAACCAA+AGG | + | chr2.2:1889399-1889418 | None:intergenic | 40.0% |
! | TCTCCTTCACATCCTTCTTT+TGG | - | chr2.2:1887840-1887859 | MS.gene36313:CDS | 40.0% |
! | TGATATTGGAGTAGCTTGCA+TGG | + | chr2.2:1887805-1887824 | None:intergenic | 40.0% |
!! | GTGGACCATCTTTTTGAAGA+AGG | - | chr2.2:1888433-1888452 | MS.gene36313:intron | 40.0% |
!!! | GGGATTTTTAGGTCATCTTC+AGG | - | chr2.2:1887900-1887919 | MS.gene36313:CDS | 40.0% |
AAGATTCCCCTTTATGGAGC+TGG | - | chr2.2:1889246-1889265 | MS.gene36313:CDS | 45.0% | |
AGGTCATCTTCAGGAAGGAA+AGG | - | chr2.2:1887909-1887928 | MS.gene36313:CDS | 45.0% | |
CAAGATTGATCGGTGAAGTG+TGG | + | chr2.2:1888993-1889012 | None:intergenic | 45.0% | |
CAGAAGAGTTTCTCGAGTGA+CGG | + | chr2.2:1887866-1887885 | None:intergenic | 45.0% | |
CGAGAAACTCTTCTGCTAGT+CGG | - | chr2.2:1887871-1887890 | MS.gene36313:CDS | 45.0% | |
GGTTGATCCAGCTCCATAAA+GGG | + | chr2.2:1889256-1889275 | None:intergenic | 45.0% | |
GTTGATCCAGCTCCATAAAG+GGG | + | chr2.2:1889255-1889274 | None:intergenic | 45.0% | |
TGGTTGATCCAGCTCCATAA+AGG | + | chr2.2:1889257-1889276 | None:intergenic | 45.0% | |
! | AAGTTTGAAATCCGATCGCG+AGG | - | chr2.2:1889321-1889340 | MS.gene36313:CDS | 45.0% |
! | GGTAAGGACAAGGCATCATA+AGG | - | chr2.2:1889362-1889381 | MS.gene36313:CDS | 45.0% |
! | GGTCTCTTTGGAGATCTTGA+TGG | + | chr2.2:1887726-1887745 | None:intergenic | 45.0% |
! | TCCGGTTTGCGAAACTGTTA+TGG | + | chr2.2:1889277-1889296 | None:intergenic | 45.0% |
! | TTTTTGTTGGGACTCCTGTG+TGG | + | chr2.2:1888903-1888922 | None:intergenic | 45.0% |
!! | AAGTGCTACTTCAACGCTTC+CGG | + | chr2.2:1889295-1889314 | None:intergenic | 45.0% |
!! | CTCTTCTGCTAGTCGGTTTT+CGG | - | chr2.2:1887878-1887897 | MS.gene36313:CDS | 45.0% |
!! | GGAGATCTTGATGGTGAAGA+TGG | + | chr2.2:1887717-1887736 | None:intergenic | 45.0% |
!! | GTCGGTTTTCGGGGATTTTT+AGG | - | chr2.2:1887889-1887908 | MS.gene36313:CDS | 45.0% |
!! | TCTTCTGCTAGTCGGTTTTC+GGG | - | chr2.2:1887879-1887898 | MS.gene36313:CDS | 45.0% |
CGGCCAAAAGAAGGATGTGA+AGG | + | chr2.2:1887846-1887865 | None:intergenic | 50.0% | |
GGATGTGAAGGAGACTCCAT+AGG | + | chr2.2:1887834-1887853 | None:intergenic | 50.0% | |
TATCAGTATCGCAACCGGTG+AGG | - | chr2.2:1889023-1889042 | MS.gene36313:CDS | 50.0% | |
TGATCGGTGAAGTGTGGACA+TGG | + | chr2.2:1888987-1889006 | None:intergenic | 50.0% | |
TGGGGAAACTGGTAAGGACA+AGG | - | chr2.2:1889352-1889371 | MS.gene36313:CDS | 50.0% | |
! | ATGTGGTGGGGAAACTGGTA+AGG | - | chr2.2:1889346-1889365 | MS.gene36313:CDS | 50.0% |
! | TGATCATTTGGGGTGCTAGC+AGG | - | chr2.2:1888084-1888103 | MS.gene36313:intron | 50.0% |
!! | CTTCTGCTAGTCGGTTTTCG+GGG | - | chr2.2:1887880-1887899 | MS.gene36313:CDS | 50.0% |
AATCCGATCGCGAGGTGATG+TGG | - | chr2.2:1889329-1889348 | MS.gene36313:CDS | 55.0% | |
CTCGAGTGACGGCCAAAAGA+AGG | + | chr2.2:1887855-1887874 | None:intergenic | 55.0% | |
GATAAAGGGTGGCCTGAGTG+TGG | - | chr2.2:1887948-1887967 | MS.gene36313:intron | 55.0% | |
! | AGGTGATGTGGTGGGGAAAC+TGG | - | chr2.2:1889341-1889360 | MS.gene36313:CDS | 55.0% |
CCACCACATCACCTCGCGAT+CGG | + | chr2.2:1889335-1889354 | None:intergenic | 60.0% | |
CGATCGCGAGGTGATGTGGT+GGG | - | chr2.2:1889333-1889352 | MS.gene36313:CDS | 60.0% | |
GATCGCGAGGTGATGTGGTG+GGG | - | chr2.2:1889334-1889353 | MS.gene36313:CDS | 60.0% | |
GGGTGCTAGCAGGCCTTTCA+AGG | - | chr2.2:1888094-1888113 | MS.gene36313:CDS | 60.0% | |
! | TGGGAGGGTACAGACCACAC+AGG | - | chr2.2:1888886-1888905 | MS.gene36313:intron | 60.0% |
CCGATCGCGAGGTGATGTGG+TGG | - | chr2.2:1889332-1889351 | MS.gene36313:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 1887672 | 1889464 | 1887672 | ID=MS.gene36313 |
chr2.2 | mRNA | 1887672 | 1889464 | 1887672 | ID=MS.gene36313.t1;Parent=MS.gene36313 |
chr2.2 | exon | 1889003 | 1889464 | 1889003 | ID=MS.gene36313.t1.exon1;Parent=MS.gene36313.t1 |
chr2.2 | CDS | 1889003 | 1889464 | 1889003 | ID=cds.MS.gene36313.t1;Parent=MS.gene36313.t1 |
chr2.2 | exon | 1888092 | 1888277 | 1888092 | ID=MS.gene36313.t1.exon2;Parent=MS.gene36313.t1 |
chr2.2 | CDS | 1888092 | 1888277 | 1888092 | ID=cds.MS.gene36313.t1;Parent=MS.gene36313.t1 |
chr2.2 | exon | 1887672 | 1887953 | 1887672 | ID=MS.gene36313.t1.exon3;Parent=MS.gene36313.t1 |
chr2.2 | CDS | 1887672 | 1887953 | 1887672 | ID=cds.MS.gene36313.t1;Parent=MS.gene36313.t1 |
Gene Sequence |
Protein sequence |