AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36346

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36346.t1 MTR_2g101330 96.970 330 9 1 1 329 1 330 0.0 662
MS.gene36346.t1 MTR_3g005210 43.987 316 169 6 5 316 6 317 4.33e-88 267
MS.gene36346.t1 MTR_3g005170 42.991 321 175 6 5 321 10 326 2.98e-84 258
MS.gene36346.t1 MTR_5g056600 42.271 317 178 4 6 319 5 319 3.24e-83 254
MS.gene36346.t1 MTR_8g062110 43.354 316 170 5 5 316 9 319 1.73e-82 253
MS.gene36346.t1 MTR_8g062110 43.354 316 170 5 5 316 18 328 2.41e-82 253
MS.gene36346.t1 MTR_0164s0070 90.840 131 12 0 1 131 1 131 1.66e-80 244
MS.gene36346.t1 MTR_0164s0070 82.857 70 12 0 206 275 122 191 9.30e-36 129
MS.gene36346.t1 MTR_3g005170 46.520 273 142 4 5 276 10 279 2.15e-80 246
MS.gene36346.t1 MTR_8g062440 41.693 319 177 5 5 319 8 321 2.15e-80 248
MS.gene36346.t1 MTR_8g062440 42.271 317 173 6 5 316 8 319 8.40e-80 246
MS.gene36346.t1 MTR_1g022440 39.875 321 184 6 5 319 8 325 1.37e-78 243
MS.gene36346.t1 MTR_8g062110 45.421 273 144 3 5 276 9 277 5.03e-77 237
MS.gene36346.t1 MTR_8g062110 45.421 273 144 3 5 276 9 277 8.27e-77 237
MS.gene36346.t1 MTR_8g062440 44.689 273 146 3 5 276 8 276 6.46e-76 236
MS.gene36346.t1 MTR_4g009040 42.508 327 162 8 4 319 12 323 1.01e-75 236
MS.gene36346.t1 MTR_4g077130 40.823 316 179 6 5 316 9 320 2.45e-75 234
MS.gene36346.t1 MTR_5g072620 39.938 323 188 4 1 320 1 320 2.79e-75 234
MS.gene36346.t1 MTR_4g077100 39.873 316 182 6 5 316 11 322 3.09e-75 234
MS.gene36346.t1 MTR_1g022445 38.154 325 192 6 1 319 4 325 1.60e-74 233
MS.gene36346.t1 MTR_4g009040 41.994 331 162 9 4 319 12 327 1.77e-73 230
MS.gene36346.t1 MTR_4g077100 42.857 273 152 4 5 276 11 280 4.13e-73 228
MS.gene36346.t1 MTR_2g104960 40.867 323 180 5 5 324 20 334 4.39e-72 227
MS.gene36346.t1 MTR_4g092080 38.110 328 189 8 2 317 11 336 1.25e-69 220
MS.gene36346.t1 MTR_4g006940 39.506 324 185 5 2 322 14 329 1.33e-69 220
MS.gene36346.t1 MTR_4g009690 39.938 323 175 6 4 319 12 322 2.76e-69 219
MS.gene36346.t1 MTR_4g009690 39.506 324 176 6 4 319 12 323 3.21e-68 216
MS.gene36346.t1 MTR_3g031650 37.963 324 187 6 1 317 1 317 3.90e-68 216
MS.gene36346.t1 MTR_3g031650 40.502 279 156 4 1 275 1 273 7.58e-67 211
MS.gene36346.t1 MTR_7g074880 38.957 326 183 10 4 319 7 326 1.70e-66 212
MS.gene36346.t1 MTR_7g074820 39.144 327 184 10 4 319 7 329 2.01e-66 212
MS.gene36346.t1 MTR_3g005170 38.006 321 160 6 5 321 10 295 3.64e-66 210
MS.gene36346.t1 MTR_7g074730 38.532 327 185 10 4 319 7 328 9.85e-66 210
MS.gene36346.t1 MTR_7g074850 37.805 328 187 9 4 319 7 329 1.85e-64 207
MS.gene36346.t1 MTR_7g074710 39.571 326 181 9 4 319 7 326 6.32e-63 203
MS.gene36346.t1 MTR_4g006940 41.091 275 154 4 2 276 14 280 2.94e-61 197
MS.gene36346.t1 MTR_4g006940 41.091 275 154 4 2 276 14 280 2.94e-61 197
MS.gene36346.t1 MTR_4g081440 35.329 334 195 8 4 319 19 349 3.47e-60 196
MS.gene36346.t1 MTR_2g028620 35.671 328 193 9 2 319 7 326 1.07e-59 195
MS.gene36346.t1 MTR_4g081440 35.522 335 194 9 4 319 23 354 1.46e-58 192
MS.gene36346.t1 MTR_2g028620 38.768 276 161 5 2 273 7 278 1.32e-57 189
MS.gene36346.t1 MTR_4g023730 33.231 325 204 7 5 319 8 329 6.59e-52 174
MS.gene36346.t1 MTR_7g074870 33.898 295 172 11 38 319 4 288 7.86e-44 152
MS.gene36346.t1 MTR_8g062110 37.004 227 135 4 94 316 11 233 1.33e-42 147
MS.gene36346.t1 MTR_8g062110 38.587 184 109 2 94 276 11 191 5.37e-37 131
MS.gene36346.t1 MTR_7g117190 30.267 337 212 10 4 319 6 340 3.28e-35 131
MS.gene36346.t1 MTR_5g029990 30.075 266 170 5 3 267 10 260 1.41e-32 123
MS.gene36346.t1 MTR_7g117190 30.844 308 188 10 4 291 6 308 1.67e-32 123
MS.gene36346.t1 MTR_6g406250 29.730 296 194 7 5 292 55 344 4.67e-32 123
MS.gene36346.t1 MTR_2g013230 27.893 337 223 6 4 321 7 342 9.00e-32 122
MS.gene36346.t1 MTR_2g013250 28.528 326 209 8 4 308 6 328 1.59e-31 121
MS.gene36346.t1 MTR_2g013260 28.395 324 212 6 4 308 7 329 1.40e-27 110
MS.gene36346.t1 MTR_2g013260 29.210 291 187 5 4 276 7 296 2.19e-26 106
MS.gene36346.t1 MTR_6g406250 33.333 192 124 2 5 193 55 245 8.34e-26 103
MS.gene36346.t1 MTR_0685s0030 30.435 161 106 4 159 316 2 159 1.07e-18 82.4
MS.gene36346.t1 MTR_3g011130 40.517 116 67 2 97 210 30 145 9.05e-18 79.3
MS.gene36346.t1 MTR_0685s0030 33.898 118 76 2 159 276 2 117 9.02e-17 75.5
MS.gene36346.t1 MTR_8g062710 42.105 95 44 2 4 98 19 102 1.09e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36346.t1 AT4G35420 70.347 317 93 1 4 320 7 322 1.01e-173 485
MS.gene36346.t1 AT1G51410 43.925 321 174 5 2 319 6 323 1.56e-83 256
MS.gene36346.t1 AT5G19440 43.671 316 172 4 5 317 10 322 1.71e-82 253
MS.gene36346.t1 AT1G68540 41.640 317 180 4 7 319 6 321 1.95e-81 250
MS.gene36346.t1 AT5G58490 41.925 322 175 5 5 320 9 324 1.12e-77 241
MS.gene36346.t1 AT1G09480 40.506 316 180 5 5 316 8 319 2.61e-76 237
MS.gene36346.t1 AT1G09480 40.506 316 180 5 5 316 55 366 6.72e-76 238
MS.gene36346.t1 AT1G09490 40.317 315 182 4 5 316 8 319 2.10e-75 235
MS.gene36346.t1 AT1G66800 40.764 314 178 4 5 316 8 315 3.71e-75 234
MS.gene36346.t1 AT5G42800 39.815 324 186 7 2 319 5 325 4.23e-75 236
MS.gene36346.t1 AT1G09510 40.635 315 181 4 5 316 8 319 2.58e-74 232
MS.gene36346.t1 AT1G25460 42.453 318 174 7 7 319 6 319 3.41e-74 231
MS.gene36346.t1 AT1G09500 39.117 317 186 4 5 316 8 322 3.99e-72 226
MS.gene36346.t1 AT2G02400 37.812 320 193 4 2 319 3 318 3.68e-71 224
MS.gene36346.t1 AT1G09500 41.758 273 156 2 5 276 8 278 1.73e-70 221
MS.gene36346.t1 AT1G61720 37.730 326 189 7 4 317 12 335 1.15e-67 216
MS.gene36346.t1 AT1G15950 38.365 318 185 6 5 319 13 322 3.14e-63 204
MS.gene36346.t1 AT1G15950 38.365 318 185 6 5 319 13 322 3.14e-63 204
MS.gene36346.t1 AT2G33590 37.419 310 191 3 4 313 8 314 1.13e-62 202
MS.gene36346.t1 AT1G76470 38.226 327 187 6 1 319 3 322 8.73e-61 197
MS.gene36346.t1 AT1G80820 36.957 322 192 6 5 323 8 321 1.50e-60 197
MS.gene36346.t1 AT2G33600 37.419 310 191 3 4 313 8 314 2.02e-59 194
MS.gene36346.t1 AT1G15950 38.436 307 178 6 5 308 13 311 2.43e-59 194
MS.gene36346.t1 AT1G09490 37.722 281 169 4 39 316 11 288 1.95e-58 190
MS.gene36346.t1 AT2G45400 35.758 330 192 7 5 319 40 364 5.10e-56 186
MS.gene36346.t1 AT1G09500 36.749 283 172 4 39 316 8 288 9.19e-56 183
MS.gene36346.t1 AT1G15950 40.293 273 155 5 5 277 13 277 1.23e-55 183
MS.gene36346.t1 AT1G15950 40.074 272 155 5 5 276 13 276 2.40e-55 182
MS.gene36346.t1 AT1G15950 39.855 276 158 5 5 280 13 280 5.51e-55 181
MS.gene36346.t1 AT4G27250 33.333 348 197 11 6 326 14 353 4.65e-53 178
MS.gene36346.t1 AT4G27250 33.431 341 196 11 6 326 14 343 3.27e-52 176
MS.gene36346.t1 AT2G45400 36.691 278 167 4 5 274 40 316 5.62e-52 174
MS.gene36346.t1 AT1G80820 38.235 272 160 5 5 276 8 271 2.35e-51 171
MS.gene36346.t1 AT1G68540 39.070 215 126 4 109 319 1 214 5.81e-46 155
MS.gene36346.t1 AT2G45400 32.770 296 181 6 37 319 17 307 9.81e-43 150
MS.gene36346.t1 AT2G23910 28.000 275 189 5 6 279 11 277 2.44e-37 135
MS.gene36346.t1 AT2G23910 27.941 272 187 5 6 276 11 274 4.93e-37 134
MS.gene36346.t1 AT2G23910 27.473 273 189 5 6 277 11 275 2.01e-36 132
MS.gene36346.t1 AT2G45400 37.037 216 127 4 5 212 40 254 3.90e-36 131
MS.gene36346.t1 AT1G15950 33.628 226 145 3 97 319 1 224 2.57e-34 126
MS.gene36346.t1 AT4G30470 27.636 275 187 6 6 278 11 275 2.02e-31 120
MS.gene36346.t1 AT2G23910 26.295 251 176 5 30 279 1 243 9.19e-29 112
MS.gene36346.t1 AT5G14700 29.434 265 170 6 5 258 55 313 1.42e-25 105
MS.gene36346.t1 AT5G14700 30.653 199 128 3 5 195 55 251 3.91e-18 83.6

Find 63 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGAAAGTTGAACATTTA+TGG 0.118270 2.2:+2204673 MS.gene36346:CDS
ATTGGAACAGTTAGAGATTT+AGG 0.193478 2.2:+2204506 MS.gene36346:CDS
TCCACTGCTTCTGATGTTCT+AGG 0.207931 2.2:+2205563 MS.gene36346:CDS
GACTCATCAATTGGTATGTT+TGG 0.250406 2.2:-2205153 None:intergenic
ACTAGTCCAAGCTGATTTAA+TGG 0.254779 2.2:+2204725 MS.gene36346:CDS
CATAAATCTATTGGCAAGTT+AGG 0.293531 2.2:-2205539 None:intergenic
CTTTGCATCGTTTGTGGAGC+AGG 0.323462 2.2:+2206162 MS.gene36346:CDS
ACTGGAAAGCTGGAGAGTTT+AGG 0.349228 2.2:+2206100 MS.gene36346:CDS
AGTTGAACATTTATGGAAGT+TGG 0.360831 2.2:+2204680 MS.gene36346:CDS
GAACACAAAGTATGTGTAAC+AGG 0.361376 2.2:+2204422 MS.gene36346:CDS
CTGCCAGTGTCTTTGACATT+GGG 0.362452 2.2:-2205442 None:intergenic
AATAATGGATAATGATGATT+TGG 0.363243 2.2:+2205809 MS.gene36346:CDS
TCTGCCAGTGTCTTTGACAT+TGG 0.367364 2.2:-2205443 None:intergenic
TAGCTTCGACAACGCGATCA+TGG 0.382636 2.2:+2204755 MS.gene36346:CDS
GCAGTGGAACATAAATCTAT+TGG 0.383398 2.2:-2205548 None:intergenic
TTGTCTGGATATCATGTCAT+TGG 0.385389 2.2:+2204488 MS.gene36346:CDS
GTATGTGTAACAGGAGCTTC+AGG 0.422762 2.2:+2204431 MS.gene36346:CDS
TGAGTCATCTTGGAGCTCAT+TGG 0.425720 2.2:+2205170 MS.gene36346:CDS
CTCCAAGATGACTCATCAAT+TGG 0.439011 2.2:-2205162 None:intergenic
TTTCTTCCATTAAATCAGCT+TGG 0.450929 2.2:-2204731 None:intergenic
TGATTGCTTTGCATCGTTTG+TGG 0.452335 2.2:+2206156 MS.gene36346:CDS
TGGGATTATTGCAAAGAGAA+TGG 0.453239 2.2:+2205476 MS.gene36346:CDS
TACCAATTGATGAGTCATCT+TGG 0.468174 2.2:+2205160 MS.gene36346:CDS
AGAAATTTCAATGGCATGGA+AGG 0.468896 2.2:+2205694 MS.gene36346:CDS
AACACCACTCGAACAAGGGC+TGG 0.477786 2.2:-2205087 None:intergenic
TGAACTAAACACTGGAAAGC+TGG 0.486679 2.2:+2206090 MS.gene36346:CDS
AGCTTCGACAACGCGATCAT+GGG 0.489980 2.2:+2204756 MS.gene36346:CDS
ATGCTAGCAAATCGTTATCC+TGG 0.493557 2.2:+2205837 MS.gene36346:CDS
TTTGATATATGATTGAGTAC+TGG 0.499172 2.2:-2204807 None:intergenic
ATTTCAATGGCATGGAAGGA+TGG 0.500563 2.2:+2205698 MS.gene36346:CDS
TTAGGTCCAATTATGAATGA+TGG 0.503563 2.2:-2205521 None:intergenic
ACAATAACACAGCGCGGGGT+TGG 0.508480 2.2:-2206204 None:intergenic
TTTAGCGTACCTTGGACCGC+TGG 0.513714 2.2:-2205039 None:intergenic
TTTCAATGGCATGGAAGGAT+GGG 0.514191 2.2:+2205699 MS.gene36346:CDS
ACTGAGAAATTTCAATGGCA+TGG 0.516718 2.2:+2205690 MS.gene36346:CDS
CCAGTGTTTAGTTCATAATG+TGG 0.519415 2.2:-2206082 None:intergenic
TCATATATCAAATGATCCTA+AGG 0.522536 2.2:+2204818 MS.gene36346:CDS
GCAACACATTTAGCGTACCT+TGG 0.529211 2.2:-2205047 None:intergenic
CAAAGAGAATGGAATAGACT+TGG 0.535237 2.2:+2205487 MS.gene36346:CDS
GAACATTTATGGAAGTTGGA+AGG 0.542146 2.2:+2204684 MS.gene36346:CDS
TGATTACAATAACACAGCGC+GGG 0.546732 2.2:-2206209 None:intergenic
TATGAAAACAAAGCCTCTCA+TGG 0.552465 2.2:+2205765 MS.gene36346:CDS
AACACAGCGCGGGGTTGGTG+AGG 0.553389 2.2:-2206199 None:intergenic
GATGTTCTAGGCTTGTTCAA+AGG 0.553580 2.2:+2205575 MS.gene36346:CDS
TTTGCATCGTTTGTGGAGCA+GGG 0.553715 2.2:+2206163 MS.gene36346:CDS
AGGCTAACACCACTCGAACA+AGG 0.571304 2.2:-2205092 None:intergenic
CCACATTATGAACTAAACAC+TGG 0.581273 2.2:+2206082 MS.gene36346:CDS
ATCTTGGAACCAGCGGTCCA+AGG 0.581499 2.2:+2205030 MS.gene36346:CDS
AACGCGATCATGGGATGCAA+AGG 0.582374 2.2:+2204765 MS.gene36346:CDS
GAATCCAGCCCTTGTTCGAG+TGG 0.584274 2.2:+2205083 MS.gene36346:CDS
GCCTAGAACATCAGAAGCAG+TGG 0.588657 2.2:-2205564 None:intergenic
GGGAAACTGAGAAATTTCAA+TGG 0.589773 2.2:+2205685 MS.gene36346:CDS
GGCTAACACCACTCGAACAA+GGG 0.595366 2.2:-2205091 None:intergenic
AGGATAACGATTTGCTAGCA+TGG 0.597463 2.2:-2205835 None:intergenic
GGAATTGTGTGAGAAACTCC+TGG 0.635791 2.2:+2205191 MS.gene36346:CDS
GCAAAGGTATCTACCATGAG+AGG 0.637555 2.2:-2205778 None:intergenic
GGCAGAAATCTTGGAACCAG+CGG 0.644848 2.2:+2205023 MS.gene36346:intron
GATTACAATAACACAGCGCG+GGG 0.652504 2.2:-2206208 None:intergenic
GTACCCAATGTCAAAGACAC+TGG 0.656150 2.2:+2205439 MS.gene36346:CDS
TATATGATTGAGTACTGGAG+AGG 0.675116 2.2:-2204802 None:intergenic
TTGATTACAATAACACAGCG+CGG 0.704289 2.2:-2206210 None:intergenic
TCTAACAGCTGAAGACGATG+AGG 0.704563 2.2:-2205112 None:intergenic
TGAGTACTGGAGAGGCAATG+TGG 0.709788 2.2:-2204794 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATTTTTTTTTTTACAAA+TGG + chr2.2:2205370-2205389 MS.gene36346:intron 10.0%
!! AACATGATTTAAAAAGTAAT+AGG - chr2.2:2205310-2205329 None:intergenic 15.0%
!! AACTATATGATATTATTCTT+AGG + chr2.2:2204886-2204905 MS.gene36346:intron 15.0%
!! ACATGATTTAAAAAGTAATA+GGG - chr2.2:2205309-2205328 None:intergenic 15.0%
!! ATATCTTTGTATGATTTATT+TGG + chr2.2:2206033-2206052 MS.gene36346:intron 15.0%
!! ATTTAATCACATTACAATAT+TGG + chr2.2:2205956-2205975 MS.gene36346:intron 15.0%
!! GTAAAAATGAAAATGAAAAT+AGG - chr2.2:2204560-2204579 None:intergenic 15.0%
!!! TTTATTTTATATATACTTGC+AGG + chr2.2:2204645-2204664 MS.gene36346:intron 15.0%
!! AAAAAAAAAAATTACACCGT+CGG + chr2.2:2205923-2205942 MS.gene36346:intron 20.0%
!! AATGAAAATGAAAATAGGTT+TGG - chr2.2:2204555-2204574 None:intergenic 20.0%
!! TAATCAAAATTCAAACATCA+TGG + chr2.2:2204947-2204966 MS.gene36346:intron 20.0%
!! TTAAATTCTATATATACCGA+CGG - chr2.2:2205942-2205961 None:intergenic 20.0%
!!! AATAATGGATAATGATGATT+TGG + chr2.2:2205809-2205828 MS.gene36346:CDS 20.0%
!!! ATACTATGATGTTATTTGAT+TGG + chr2.2:2205886-2205905 MS.gene36346:intron 20.0%
!!! ATTTTACCATCATTCATAAT+TGG + chr2.2:2205515-2205534 MS.gene36346:CDS 20.0%
!!! GTTAAATTTTGTCAAAAAAC+AGG + chr2.2:2205002-2205021 MS.gene36346:intron 20.0%
!!! TATACATATACGATTAGTTA+AGG - chr2.2:2205226-2205245 None:intergenic 20.0%
!!! TGAATTTTGATTAATGTATG+AGG - chr2.2:2204940-2204959 None:intergenic 20.0%
! ACTTTGATTAATCTCTGATA+TGG + chr2.2:2204977-2204996 MS.gene36346:intron 25.0%
! ATACTGCTAATTAAACTAAC+AGG + chr2.2:2205663-2205682 MS.gene36346:intron 25.0%
! GACAAACTTGTATTGAATTA+AGG + chr2.2:2205412-2205431 MS.gene36346:intron 25.0%
! TACTGCTAATTAAACTAACA+GGG + chr2.2:2205664-2205683 MS.gene36346:intron 25.0%
! TCATATATCAAATGATCCTA+AGG + chr2.2:2204818-2204837 MS.gene36346:CDS 25.0%
! TGATTAATGTATGAGGTTAT+AGG - chr2.2:2204933-2204952 None:intergenic 25.0%
! TTTGATATATGATTGAGTAC+TGG - chr2.2:2204810-2204829 None:intergenic 25.0%
!! AGATCATGAAATGTATTTTG+AGG + chr2.2:2205341-2205360 MS.gene36346:intron 25.0%
!! ATAGTATTAACCAACCTTTT+GGG - chr2.2:2205873-2205892 None:intergenic 25.0%
!!! GTATGATTTATTTGGTTTTC+AGG + chr2.2:2206041-2206060 MS.gene36346:intron 25.0%
ACTGCTAATTAAACTAACAG+GGG + chr2.2:2205665-2205684 MS.gene36346:intron 30.0%
ACTTGTATTGAATTAAGGCA+TGG + chr2.2:2205417-2205436 MS.gene36346:intron 30.0%
AGCAGAAAGTTGAACATTTA+TGG + chr2.2:2204673-2204692 MS.gene36346:CDS 30.0%
AGTTGAACATTTATGGAAGT+TGG + chr2.2:2204680-2204699 MS.gene36346:CDS 30.0%
ATTGGAACAGTTAGAGATTT+AGG + chr2.2:2204506-2204525 MS.gene36346:CDS 30.0%
CATAAATCTATTGGCAAGTT+AGG - chr2.2:2205542-2205561 None:intergenic 30.0%
CCTTTGCAGTTCAAAAATAA+TGG + chr2.2:2205794-2205813 MS.gene36346:CDS 30.0%
TAAATGACATATCACACCTT+AGG - chr2.2:2204837-2204856 None:intergenic 30.0%
TTAGGTCCAATTATGAATGA+TGG - chr2.2:2205524-2205543 None:intergenic 30.0%
TTTCTTCCATTAAATCAGCT+TGG - chr2.2:2204734-2204753 None:intergenic 30.0%
! ATTAAGCAACTTCTTTTGTC+TGG + chr2.2:2204473-2204492 MS.gene36346:CDS 30.0%
! CATAGTATTAACCAACCTTT+TGG - chr2.2:2205874-2205893 None:intergenic 30.0%
!!! AGGCTTTGTTTTCATAAAGA+AGG - chr2.2:2205761-2205780 None:intergenic 30.0%
!!! CCATTATTTTTGAACTGCAA+AGG - chr2.2:2205797-2205816 None:intergenic 30.0%
ACTGAGAAATTTCAATGGCA+TGG + chr2.2:2205690-2205709 MS.gene36346:CDS 35.0%
AGAAATTTCAATGGCATGGA+AGG + chr2.2:2205694-2205713 MS.gene36346:CDS 35.0%
CAAAAAACAGGCAGAAATCT+TGG + chr2.2:2205014-2205033 MS.gene36346:intron 35.0%
CAAAGAGAATGGAATAGACT+TGG + chr2.2:2205487-2205506 MS.gene36346:CDS 35.0%
CATGTACAGCTTAGAAGAAA+AGG + chr2.2:2205996-2206015 MS.gene36346:intron 35.0%
CCACATTATGAACTAAACAC+TGG + chr2.2:2206082-2206101 MS.gene36346:CDS 35.0%
GAACACAAAGTATGTGTAAC+AGG + chr2.2:2204422-2204441 MS.gene36346:CDS 35.0%
GAACATTTATGGAAGTTGGA+AGG + chr2.2:2204684-2204703 MS.gene36346:CDS 35.0%
GACTCATCAATTGGTATGTT+TGG - chr2.2:2205156-2205175 None:intergenic 35.0%
GCAGTGGAACATAAATCTAT+TGG - chr2.2:2205551-2205570 None:intergenic 35.0%
GGGAAACTGAGAAATTTCAA+TGG + chr2.2:2205685-2205704 MS.gene36346:CDS 35.0%
TACATGCACACAAATGTTCT+AGG + chr2.2:2205598-2205617 MS.gene36346:intron 35.0%
TACCAATTGATGAGTCATCT+TGG + chr2.2:2205160-2205179 MS.gene36346:CDS 35.0%
TAGTTAAGGAAATGTGTACC+AGG - chr2.2:2205212-2205231 None:intergenic 35.0%
TATGAAAACAAAGCCTCTCA+TGG + chr2.2:2205765-2205784 MS.gene36346:CDS 35.0%
TGGGATTATTGCAAAGAGAA+TGG + chr2.2:2205476-2205495 MS.gene36346:CDS 35.0%
TTGTCTGGATATCATGTCAT+TGG + chr2.2:2204488-2204507 MS.gene36346:CDS 35.0%
! ACTAGTCCAAGCTGATTTAA+TGG + chr2.2:2204725-2204744 MS.gene36346:CDS 35.0%
! CCAGTGTTTAGTTCATAATG+TGG - chr2.2:2206085-2206104 None:intergenic 35.0%
! TTTTCCAATTCCCAAAAGGT+TGG + chr2.2:2205860-2205879 MS.gene36346:intron 35.0%
!! TATATGATTGAGTACTGGAG+AGG - chr2.2:2204805-2204824 None:intergenic 35.0%
!! TTAACCAACCTTTTGGGAAT+TGG - chr2.2:2205867-2205886 None:intergenic 35.0%
ATGCTAGCAAATCGTTATCC+TGG + chr2.2:2205837-2205856 MS.gene36346:CDS 40.0%
ATTTCAATGGCATGGAAGGA+TGG + chr2.2:2205698-2205717 MS.gene36346:CDS 40.0%
CTCCAAGATGACTCATCAAT+TGG - chr2.2:2205165-2205184 None:intergenic 40.0%
TGAACTAAACACTGGAAAGC+TGG + chr2.2:2206090-2206109 MS.gene36346:CDS 40.0%
TGATTGCTTTGCATCGTTTG+TGG + chr2.2:2206156-2206175 MS.gene36346:CDS 40.0%
TTTCAATGGCATGGAAGGAT+GGG + chr2.2:2205699-2205718 MS.gene36346:CDS 40.0%
! GATGTTCTAGGCTTGTTCAA+AGG + chr2.2:2205575-2205594 MS.gene36346:CDS 40.0%
!! AGGATAACGATTTGCTAGCA+TGG - chr2.2:2205838-2205857 None:intergenic 40.0%
!! CTGGTTTTCCAATTCCCAAA+AGG + chr2.2:2205856-2205875 MS.gene36346:CDS 40.0%
!! CTTTTGGGAATTGGAAAACC+AGG - chr2.2:2205858-2205877 None:intergenic 40.0%
ACTGGAAAGCTGGAGAGTTT+AGG + chr2.2:2206100-2206119 MS.gene36346:CDS 45.0%
ACTGGCAGAAAAAGCAGCTT+GGG + chr2.2:2205457-2205476 MS.gene36346:CDS 45.0%
CTGCCAGTGTCTTTGACATT+GGG - chr2.2:2205445-2205464 None:intergenic 45.0%
GCAACACATTTAGCGTACCT+TGG - chr2.2:2205050-2205069 None:intergenic 45.0%
GGAATTGTGTGAGAAACTCC+TGG + chr2.2:2205191-2205210 MS.gene36346:CDS 45.0%
GTACCCAATGTCAAAGACAC+TGG + chr2.2:2205439-2205458 MS.gene36346:CDS 45.0%
GTATGTGTAACAGGAGCTTC+AGG + chr2.2:2204431-2204450 MS.gene36346:CDS 45.0%
TCCACTGCTTCTGATGTTCT+AGG + chr2.2:2205563-2205582 MS.gene36346:CDS 45.0%
TCTAACAGCTGAAGACGATG+AGG - chr2.2:2205115-2205134 None:intergenic 45.0%
TCTGCCAGTGTCTTTGACAT+TGG - chr2.2:2205446-2205465 None:intergenic 45.0%
TGAGTCATCTTGGAGCTCAT+TGG + chr2.2:2205170-2205189 MS.gene36346:CDS 45.0%
TTTGCATCGTTTGTGGAGCA+GGG + chr2.2:2206163-2206182 MS.gene36346:CDS 45.0%
! AACAGGAGCTTCAGGCTTTT+TGG + chr2.2:2204439-2204458 MS.gene36346:CDS 45.0%
!! GCAAAGGTATCTACCATGAG+AGG - chr2.2:2205781-2205800 None:intergenic 45.0%
!!! CTTCAGGCTTTTTGGCTTCT+TGG + chr2.2:2204447-2204466 MS.gene36346:CDS 45.0%
AACGCGATCATGGGATGCAA+AGG + chr2.2:2204765-2204784 MS.gene36346:CDS 50.0%
AGCTTCGACAACGCGATCAT+GGG + chr2.2:2204756-2204775 MS.gene36346:CDS 50.0%
AGGCTAACACCACTCGAACA+AGG - chr2.2:2205095-2205114 None:intergenic 50.0%
CACTGGCAGAAAAAGCAGCT+TGG + chr2.2:2205456-2205475 MS.gene36346:CDS 50.0%
CTTTGCATCGTTTGTGGAGC+AGG + chr2.2:2206162-2206181 MS.gene36346:CDS 50.0%
GCCTAGAACATCAGAAGCAG+TGG - chr2.2:2205567-2205586 None:intergenic 50.0%
GGCAGAAATCTTGGAACCAG+CGG + chr2.2:2205023-2205042 MS.gene36346:intron 50.0%
GGCTAACACCACTCGAACAA+GGG - chr2.2:2205094-2205113 None:intergenic 50.0%
TAGCTTCGACAACGCGATCA+TGG + chr2.2:2204755-2204774 MS.gene36346:CDS 50.0%
!! TGAGTACTGGAGAGGCAATG+TGG - chr2.2:2204797-2204816 None:intergenic 50.0%
AACACCACTCGAACAAGGGC+TGG - chr2.2:2205090-2205109 None:intergenic 55.0%
ACAATAACACAGCGCGGGGT+TGG - chr2.2:2206207-2206226 None:intergenic 55.0%
ATCTTGGAACCAGCGGTCCA+AGG + chr2.2:2205030-2205049 MS.gene36346:CDS 55.0%
GAATCCAGCCCTTGTTCGAG+TGG + chr2.2:2205083-2205102 MS.gene36346:CDS 55.0%
TTTAGCGTACCTTGGACCGC+TGG - chr2.2:2205042-2205061 None:intergenic 55.0%
!! AACACAGCGCGGGGTTGGTG+AGG - chr2.2:2206202-2206221 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 2204419 2206228 2204419 ID=MS.gene36346
chr2.2 mRNA 2204419 2206228 2204419 ID=MS.gene36346.t1;Parent=MS.gene36346
chr2.2 exon 2204419 2204527 2204419 ID=MS.gene36346.t1.exon1;Parent=MS.gene36346.t1
chr2.2 CDS 2204419 2204527 2204419 ID=cds.MS.gene36346.t1;Parent=MS.gene36346.t1
chr2.2 exon 2204667 2204839 2204667 ID=MS.gene36346.t1.exon2;Parent=MS.gene36346.t1
chr2.2 CDS 2204667 2204839 2204667 ID=cds.MS.gene36346.t1;Parent=MS.gene36346.t1
chr2.2 exon 2205024 2205212 2205024 ID=MS.gene36346.t1.exon3;Parent=MS.gene36346.t1
chr2.2 CDS 2205024 2205212 2205024 ID=cds.MS.gene36346.t1;Parent=MS.gene36346.t1
chr2.2 exon 2205434 2205596 2205434 ID=MS.gene36346.t1.exon4;Parent=MS.gene36346.t1
chr2.2 CDS 2205434 2205596 2205434 ID=cds.MS.gene36346.t1;Parent=MS.gene36346.t1
chr2.2 exon 2205685 2205877 2205685 ID=MS.gene36346.t1.exon5;Parent=MS.gene36346.t1
chr2.2 CDS 2205685 2205877 2205685 ID=cds.MS.gene36346.t1;Parent=MS.gene36346.t1
chr2.2 exon 2206063 2206228 2206063 ID=MS.gene36346.t1.exon6;Parent=MS.gene36346.t1
chr2.2 CDS 2206063 2206228 2206063 ID=cds.MS.gene36346.t1;Parent=MS.gene36346.t1
Gene Sequence

>MS.gene36346

ATGGAACACAAAGTATGTGTAACAGGAGCTTCAGGCTTTTTGGCTTCTTGGCTTATTAAGCAACTTCTTTTGTCTGGATATCATGTCATTGGAACAGTTAGAGATTTAGGTAAAATGTATTTTATGATCATGACCAAACCTATTTTCATTTTCATTTTTACAATATTCAACTAATAAGTTGCAAAATGTAATTACATTTAAACACATTTAACATATGCATGACATTTTTATTTTATATATACTTGCAGGTAAGAAGCAGAAAGTTGAACATTTATGGAAGTTGGAAGGAGCAACAGAAAGACTCGAACTAGTCCAAGCTGATTTAATGGAAGAAAATAGCTTCGACAACGCGATCATGGGATGCAAAGGTGTCTTCCACATTGCCTCTCCAGTACTCAATCATATATCAAATGATCCTAAGGTGTGATATGTCATTTATATTTCTATGTTTTCATGAAACATGTTGCAACTATATGATATTATTCTTAGGTATCTCTATGTTATGTTACAACCTATAACCTCATACATTAATCAAAATTCAAACATCATGGAAACTATACTTTGATTAATCTCTGATATGGTTGTTAAATTTTGTCAAAAAACAGGCAGAAATCTTGGAACCAGCGGTCCAAGGTACGCTAAATGTGTTGCGTTCTTGTCGAAAGAATCCAGCCCTTGTTCGAGTGGTGTTAGCCTCATCGTCTTCAGCTGTTAGAGTAAGAGCTGATTTTAATCCAAACATACCAATTGATGAGTCATCTTGGAGCTCATTGGAATTGTGTGAGAAACTCCTGGTACACATTTCCTTAACTAATCGTATATGTATAAGATTTTGATTAGTATGTACTCAATCTAAAAATGATTTATACATATGAGAAATTATATGTCCCTATTACTTTTTAAATCATGTTCTTATGTAACAAGATCATGAAATGTATTTTGAGGTACATATACATTTTTTTTTTTACAAATGGATAGTTATTAAACTTATGTGACAAACTTGTATTGAATTAAGGCATGGTACCCAATGTCAAAGACACTGGCAGAAAAAGCAGCTTGGGATTATTGCAAAGAGAATGGAATAGACTTGGTGACTATTTTACCATCATTCATAATTGGACCTAACTTGCCAATAGATTTATGTTCCACTGCTTCTGATGTTCTAGGCTTGTTCAAAGGTACATGCACACAAATGTTCTAGGCTTAATTTGATTGATATATTTTGTAAAATCATATGATTGACTATACTGCTAATTAAACTAACAGGGGAAACTGAGAAATTTCAATGGCATGGAAGGATGGGATATGTTCATATCGATGATGTTGCACTTTGTCACATCCTTCTTTATGAAAACAAAGCCTCTCATGGTAGATACCTTTGCAGTTCAAAAATAATGGATAATGATGATTTGGTTGCCATGCTAGCAAATCGTTATCCTGGTTTTCCAATTCCCAAAAGGTTGGTTAATACTATGATGTTATTTGATTGGATACATGTATAAAAAAAAAAAAAAATTACACCGTCGGTATATATAGAATTTAATCACATTACAATATTGGAAACTAGAAAATGTAAACATGTACAGCTTAGAAGAAAAGGAAAAACTAATATGTATATCTTTGTATGATTTATTTGGTTTTCAGGTTCAAGAAACTAGATAGACCACATTATGAACTAAACACTGGAAAGCTGGAGAGTTTAGGATTCAAGTTTAAATCTGTTGAAGAAATGTTTGATGATTGCTTTGCATCGTTTGTGGAGCAGGGTCATCTCACTCTTCCTCACCAACCCCGCGCTGTGTTATTGTAA
Protein sequence

>MS.gene36346.t1

MEHKVCVTGASGFLASWLIKQLLLSGYHVIGTVRDLGKKQKVEHLWKLEGATERLELVQADLMEENSFDNAIMGCKGVFHIASPVLNHISNDPKAEILEPAVQGTLNVLRSCRKNPALVRVVLASSSSAVRVRADFNPNIPIDESSWSSLELCEKLLAWYPMSKTLAEKAAWDYCKENGIDLVTILPSFIIGPNLPIDLCSTASDVLGLFKGETEKFQWHGRMGYVHIDDVALCHILLYENKASHGRYLCSSKIMDNDDLVAMLANRYPGFPIPKRFKKLDRPHYELNTGKLESLGFKFKSVEEMFDDCFASFVEQGHLTLPHQPRAVLL