Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36880.t1 | KEH18955.1 | 94.6 | 501 | 25 | 2 | 1 | 500 | 1 | 500 | 3.70E-259 | 904.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36880.t1 | F4IH31 | 67.4 | 227 | 73 | 1 | 819 | 1045 | 105 | 330 | 1.3e-84 | 316.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36880.t1 | A0A072TZJ6 | 94.6 | 501 | 25 | 2 | 1 | 500 | 1 | 500 | 2.6e-259 | 904.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene36880 | 0.802501 | 5.45E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene36880 | 0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene051648 | MS.gene36880 | 0.851337 | 9.48E-61 | -1.69E-46 |
| MS.gene051660 | MS.gene36880 | 0.822716 | 2.04E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene36880 | 0.821244 | 4.48E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene36880 | 0.890292 | 1.12E-73 | -1.69E-46 |
| MS.gene053538 | MS.gene36880 | 0.887014 | 2.07E-72 | -1.69E-46 |
| MS.gene053540 | MS.gene36880 | 0.815911 | 7.25E-52 | -1.69E-46 |
| MS.gene053945 | MS.gene36880 | 0.837467 | 5.11E-57 | -1.69E-46 |
| MS.gene054584 | MS.gene36880 | 0.818267 | 2.14E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene36880 | 0.838394 | 2.95E-57 | -1.69E-46 |
| MS.gene055764 | MS.gene36880 | 0.820025 | 8.53E-53 | -1.69E-46 |
| MS.gene057082 | MS.gene36880 | 0.806594 | 7.62E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene36880 | 0.808167 | 3.54E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene36880 | 0.839874 | 1.22E-57 | -1.69E-46 |
| MS.gene059424 | MS.gene36880 | 0.894045 | 3.57E-75 | -1.69E-46 |
| MS.gene059425 | MS.gene36880 | 0.804876 | 1.75E-49 | -1.69E-46 |
| MS.gene060491 | MS.gene36880 | 0.809532 | 1.81E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36880.t1 | MTR_8g432670 | 94.611 | 501 | 25 | 2 | 1 | 500 | 1 | 500 | 0.0 | 948 |
| MS.gene36880.t1 | MTR_8g432670 | 80.066 | 301 | 11 | 2 | 501 | 752 | 170 | 470 | 2.28e-142 | 436 |
| MS.gene36880.t1 | MTR_8g432670 | 94.444 | 72 | 4 | 0 | 749 | 820 | 177 | 248 | 8.70e-34 | 137 |
| MS.gene36880.t1 | MTR_5g083730 | 93.860 | 228 | 13 | 1 | 819 | 1046 | 100 | 326 | 8.22e-151 | 451 |
| MS.gene36880.t1 | MTR_5g083720 | 90.351 | 228 | 22 | 0 | 819 | 1046 | 99 | 326 | 5.85e-139 | 421 |
| MS.gene36880.t1 | MTR_4g102810 | 41.256 | 223 | 115 | 4 | 288 | 500 | 364 | 580 | 7.28e-39 | 154 |
| MS.gene36880.t1 | MTR_4g102810 | 33.910 | 289 | 135 | 16 | 1 | 256 | 1 | 266 | 9.19e-18 | 88.6 |
| MS.gene36880.t1 | MTR_4g105430 | 33.750 | 160 | 90 | 3 | 354 | 498 | 212 | 370 | 1.81e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36880.t1 | AT2G40410 | 67.401 | 227 | 73 | 1 | 819 | 1045 | 105 | 330 | 1.21e-105 | 333 |
| MS.gene36880.t1 | AT3G56170 | 64.912 | 228 | 79 | 1 | 819 | 1046 | 95 | 321 | 1.50e-102 | 325 |
| MS.gene36880.t1 | AT2G40410 | 60.656 | 122 | 47 | 1 | 819 | 940 | 105 | 225 | 3.95e-43 | 157 |
| MS.gene36880.t1 | AT4G23040 | 47.059 | 221 | 96 | 5 | 288 | 500 | 318 | 525 | 1.46e-42 | 164 |
| MS.gene36880.t1 | AT4G23040 | 30.085 | 236 | 112 | 8 | 1 | 216 | 1 | 203 | 8.41e-11 | 66.2 |
| MS.gene36880.t1 | AT4G11740 | 41.228 | 228 | 108 | 2 | 288 | 500 | 348 | 564 | 2.06e-42 | 164 |
| MS.gene36880.t1 | AT4G11740 | 29.801 | 302 | 152 | 14 | 1 | 274 | 1 | 270 | 2.87e-15 | 80.9 |
| MS.gene36880.t1 | AT4G00752 | 31.781 | 365 | 184 | 14 | 1 | 316 | 1 | 349 | 4.76e-33 | 134 |
| MS.gene36880.t1 | AT4G11740 | 29.430 | 316 | 162 | 15 | 1 | 287 | 1 | 284 | 1.37e-15 | 81.3 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTTCATTGACATTTA+TGG | 0.037512 | 8.4:-63858454 | MS.gene36880:CDS |
| CAAGAATGAGGCTTTATTTC+TGG | 0.096417 | 8.4:-63833353 | MS.gene36880:CDS |
| TATGATTTCATAGACATTTA+TGG | 0.120097 | 8.4:-63831306 | MS.gene36880:CDS |
| CTGATTGAAACTGCACTTTA+TGG | 0.144237 | 8.4:-63832148 | MS.gene36880:CDS |
| TCTTTGAGAGTCCTTATTTA+TGG | 0.151619 | 8.4:-63829030 | MS.gene36880:CDS |
| TTATTTCTGGAGTTGATTTA+TGG | 0.168476 | 8.4:-63833340 | MS.gene36880:CDS |
| CTGATTGAAACTGCGCTTTA+TGG | 0.169001 | 8.4:-63860324 | MS.gene36880:CDS |
| TATCATTTCACTGTCTTTAC+AGG | 0.210054 | 8.4:-63861295 | MS.gene36880:intron |
| TGTCATTTCACTGTCTTTAC+AGG | 0.243061 | 8.4:-63830523 | MS.gene36880:intron |
| TGTCATTTCACTGTCTTTAC+AGG | 0.243061 | 8.4:-63833017 | MS.gene36880:intron |
| TAGGAATTGTTGACTTTCTA+TGG | 0.246130 | 8.4:-63830184 | MS.gene36880:CDS |
| TTTCTTCTTGCTTTGATGAA+TGG | 0.255614 | 8.4:+63831830 | None:intergenic |
| GAGCGAAGCGAGTTGGATTA+TGG | 0.267595 | 8.4:-63828658 | MS.gene36880:CDS |
| TTCTTCTTGCTTTGATGAAT+GGG | 0.268129 | 8.4:+63831831 | None:intergenic |
| TCTCATGGTAGAGGATATTA+TGG | 0.274729 | 8.4:-63861614 | MS.gene36880:CDS |
| GCACTTACGGTTTCTAGTTC+TGG | 0.284790 | 8.4:+63828807 | None:intergenic |
| TGAACAAGAAGATGATGATT+TGG | 0.308812 | 8.4:-63861322 | MS.gene36880:CDS |
| ACTGGGTGAACCCTGCCTTT+TGG | 0.311660 | 8.4:+63860224 | None:intergenic |
| TTCTTCTTGCTTTGACGAAT+GGG | 0.316400 | 8.4:+63860005 | None:intergenic |
| TGAACGAGAAGATGATGATT+TGG | 0.317721 | 8.4:-63830550 | MS.gene36880:CDS |
| TGAACGAGAAGATGATGATT+TGG | 0.317721 | 8.4:-63833044 | MS.gene36880:CDS |
| ATGAAGGTTGCGACGGATTC+CGG | 0.318205 | 8.4:+63863392 | None:intergenic |
| TTCTCTGATCTCTTTCTTTG+AGG | 0.319805 | 8.4:+63861493 | None:intergenic |
| TATTTCTGGAGTTGATTTAT+GGG | 0.322741 | 8.4:-63833339 | MS.gene36880:CDS |
| TCTCCAATCCCATGGCTTCT+CGG | 0.327793 | 8.4:+63828622 | None:intergenic |
| ACTGGATGAACCCTGCCTTT+TGG | 0.331875 | 8.4:+63832048 | None:intergenic |
| GCTGCAATGTGCACGTTACT+AGG | 0.332410 | 8.4:+63829456 | None:intergenic |
| CTCCAATCCCATGGCTTCTC+GGG | 0.340831 | 8.4:+63828623 | None:intergenic |
| CTTCAAAACTGACAAGCTTC+AGG | 0.348852 | 8.4:-63859195 | MS.gene36880:intron |
| CACGTGACTCGGCGCGGTTT+TGG | 0.350561 | 8.4:+63861891 | None:intergenic |
| TCGCCAAAGGGTGGTTCATT+TGG | 0.350615 | 8.4:+63859278 | None:intergenic |
| TTTCTTCTTGCTTTGACGAA+TGG | 0.361288 | 8.4:+63860004 | None:intergenic |
| AGATTTCCCTTGAACAATCT+TGG | 0.366156 | 8.4:+63829050 | None:intergenic |
| CACCTCTAGTTTGCTTCTGT+TGG | 0.374730 | 8.4:+63832807 | None:intergenic |
| TCTGAATGATGTTGCAGGTC+AGG | 0.374858 | 8.4:+63832085 | None:intergenic |
| TCTTGTTCAAAATGACTTTG+TGG | 0.383163 | 8.4:+63861336 | None:intergenic |
| TTCATAGTTCCTTCTAGAAC+GGG | 0.384606 | 8.4:+63829416 | None:intergenic |
| TGAAGGTTGCGACGGATTCC+GGG | 0.385376 | 8.4:+63863393 | None:intergenic |
| AGCGAAGCGAGTTGGATTAT+GGG | 0.389091 | 8.4:-63828657 | MS.gene36880:CDS |
| TTCTCTGATCTCCTTCTTCG+AGG | 0.391845 | 8.4:+63830722 | None:intergenic |
| TTCTCTGATCTCCTTCTTCG+AGG | 0.391845 | 8.4:+63833216 | None:intergenic |
| GGTTGAACAGCTACTTCAAC+TGG | 0.393087 | 8.4:+63830142 | None:intergenic |
| TAATAACTGAGATGCTGAAC+TGG | 0.394339 | 8.4:+63860206 | None:intergenic |
| TCCAATAAAATGTGCATTCA+CGG | 0.399173 | 8.4:+63862127 | None:intergenic |
| GATCAGTATCAACGTTTAGT+AGG | 0.413012 | 8.4:-63829003 | MS.gene36880:CDS |
| CAATCCAGGTTGATACTGAT+AGG | 0.420651 | 8.4:+63861673 | None:intergenic |
| CTGTCCTTTCTCCAATCCCA+TGG | 0.425752 | 8.4:+63828614 | None:intergenic |
| TCAGTTGATAAGACAACAAC+AGG | 0.428917 | 8.4:-63831999 | MS.gene36880:intron |
| TCAGTTGATAAGACAACAAC+AGG | 0.428917 | 8.4:-63860175 | MS.gene36880:intron |
| CAACCTGGATTGGGCTATGC+AGG | 0.430431 | 8.4:-63861662 | MS.gene36880:CDS |
| AGGCAGGGTTCATCCAGTTC+AGG | 0.432623 | 8.4:-63832043 | MS.gene36880:CDS |
| TCTGAATGATGCTGTGGGTC+AGG | 0.438073 | 8.4:+63860261 | None:intergenic |
| TACTATTGTTGTTCGAATGC+CGG | 0.439751 | 8.4:-63859243 | MS.gene36880:CDS |
| ATATGAAATACACACCTTGC+CGG | 0.439979 | 8.4:-63830089 | MS.gene36880:intron |
| CTTCCAAATGAACCACCCTT+TGG | 0.443104 | 8.4:-63859281 | MS.gene36880:CDS |
| AGAGATCTATGTAACGGGTT+TGG | 0.445773 | 8.4:-63861791 | MS.gene36880:CDS |
| TATCAGTATCAACCTGGATT+GGG | 0.450112 | 8.4:-63861671 | MS.gene36880:CDS |
| AATGCTTCATTGAGCTCGTC+AGG | 0.450397 | 8.4:+63832172 | None:intergenic |
| AATGCTTCATTGAGCTCGTC+AGG | 0.450397 | 8.4:+63860348 | None:intergenic |
| CTATCAGTATCAACCTGGAT+TGG | 0.452638 | 8.4:-63861672 | MS.gene36880:CDS |
| GGGCAGAAGCCCGTTCTAGA+AGG | 0.452975 | 8.4:-63829425 | MS.gene36880:CDS |
| TATTTAGACTGCAGAGAAAG+AGG | 0.453895 | 8.4:-63832914 | MS.gene36880:intron |
| AACTTAGAGATCTATGTAAC+GGG | 0.459209 | 8.4:-63861796 | MS.gene36880:CDS |
| AATTTAGACTGCAGAGAAAG+AGG | 0.466485 | 8.4:-63861192 | MS.gene36880:intron |
| GAAGCACTTGATTGAGCTAA+AGG | 0.467737 | 8.4:+63861566 | None:intergenic |
| ACGGGAGCTTCGAGCGAAAG+AGG | 0.467926 | 8.4:-63861162 | MS.gene36880:CDS |
| TTGCAGGAACTGGAGAAAAC+AGG | 0.468610 | 8.4:-63859323 | MS.gene36880:intron |
| ATCCCGAGAAGCCATGGGAT+TGG | 0.470020 | 8.4:-63828625 | MS.gene36880:CDS |
| CGCAATGACGACACTGTCCC+CGG | 0.471911 | 8.4:-63863411 | None:intergenic |
| GCTAAGGCCTACTTCATTCA+AGG | 0.476513 | 8.4:+63833378 | None:intergenic |
| TAAGGAATTGATGCTAAAGA+AGG | 0.478599 | 8.4:-63828865 | MS.gene36880:intron |
| AAAAGTATCGGATCCGACTA+AGG | 0.479370 | 8.4:-63829226 | MS.gene36880:intron |
| AGAAACACTCACAACTCTAT+AGG | 0.485284 | 8.4:+63831266 | None:intergenic |
| AGAAACACTCACAACTCTAT+AGG | 0.485284 | 8.4:+63858414 | None:intergenic |
| GGCGACGAACTCCGTTGCTC+CGG | 0.486871 | 8.4:+63863361 | None:intergenic |
| GAAGCCAGAGCGAAGCGAGT+TGG | 0.488533 | 8.4:-63828665 | MS.gene36880:CDS |
| GAACTGACCAAGATTGTTCA+AGG | 0.488734 | 8.4:-63829057 | MS.gene36880:CDS |
| CTTCAGAGTAATCATAATGT+GGG | 0.492622 | 8.4:+63861930 | None:intergenic |
| GAAGCACTTGACTGAGCTAA+AGG | 0.493328 | 8.4:+63830798 | None:intergenic |
| GAAGCACTTGACTGAGCTAA+AGG | 0.493328 | 8.4:+63833292 | None:intergenic |
| TGCTGTGGGTCAGGCAAAGA+TGG | 0.494766 | 8.4:+63860270 | None:intergenic |
| ACATGAGCTTCGAGTAAAAG+AGG | 0.495126 | 8.4:-63832884 | MS.gene36880:CDS |
| CAGAGAAAGAGGAAGCAATA+CGG | 0.495874 | 8.4:-63861181 | MS.gene36880:CDS |
| CTTCATAGTTCCTTCTAGAA+CGG | 0.497762 | 8.4:+63829415 | None:intergenic |
| TAATCCAACTCGCTTCGCTC+TGG | 0.500251 | 8.4:+63828661 | None:intergenic |
| TGTTGCAGGTCAGGCAAAGA+TGG | 0.502286 | 8.4:+63832094 | None:intergenic |
| AAGCCTCATTCTTGTTGCTA+AGG | 0.504811 | 8.4:+63833362 | None:intergenic |
| TGCACATTGCAGCCGTGCAT+AGG | 0.508473 | 8.4:-63829446 | MS.gene36880:CDS |
| GTTCTCCACAAGGGGAGGCA+AGG | 0.512550 | 8.4:-63861733 | MS.gene36880:CDS |
| AAATGCTGATCCCAAAAGGC+AGG | 0.513755 | 8.4:-63832059 | MS.gene36880:CDS |
| AAATGCTGATCCCAAAAGGC+AGG | 0.513755 | 8.4:-63860235 | MS.gene36880:CDS |
| AAGGAACTATGAAGAGGAAG+AGG | 0.513763 | 8.4:-63829406 | MS.gene36880:CDS |
| TACTACTTGACTCAAACTAT+AGG | 0.513851 | 8.4:-63861823 | MS.gene36880:CDS |
| AATTCCCTTGCCTCCCCTTG+TGG | 0.513986 | 8.4:+63861728 | None:intergenic |
| TAATAATTGAGATCCTGAAC+TGG | 0.517718 | 8.4:+63832030 | None:intergenic |
| GCACATTGCAGCCGTGCATA+GGG | 0.522397 | 8.4:-63829445 | MS.gene36880:CDS |
| AAGCACTTGATTGAGCTAAA+GGG | 0.522489 | 8.4:+63861567 | None:intergenic |
| ATTTATGGAGCAGTGAAGCC+TGG | 0.523950 | 8.4:-63831291 | MS.gene36880:CDS |
| CGTTCACAACGACCACCGTC+CGG | 0.525938 | 8.4:+63859224 | None:intergenic |
| TTCTCCACAAGGGGAGGCAA+GGG | 0.527047 | 8.4:-63861732 | MS.gene36880:CDS |
| AGAGAAAGAGGAAGCAATAC+GGG | 0.529756 | 8.4:-63861180 | MS.gene36880:CDS |
| ATGAGATGATAAATTTCCAT+TGG | 0.530591 | 8.4:+63861631 | None:intergenic |
| GCACCTGCATAGCCCAATCC+AGG | 0.530699 | 8.4:+63861659 | None:intergenic |
| TGCTCATGCTTTATTAGCCG+AGG | 0.531346 | 8.4:-63832845 | MS.gene36880:CDS |
| TGCTCATGCTTTATTAGCCG+AGG | 0.531346 | 8.4:-63861123 | MS.gene36880:CDS |
| TGCAATAGAAGCCTCGAAGA+AGG | 0.533510 | 8.4:-63830733 | MS.gene36880:CDS |
| TGCAATAGAAGCCTCGAAGA+AGG | 0.533510 | 8.4:-63833227 | MS.gene36880:CDS |
| CCACATTATGATTACTCTGA+AGG | 0.534093 | 8.4:-63861929 | MS.gene36880:CDS |
| GAAGCCATGGGATTGGAGAA+AGG | 0.535032 | 8.4:-63828618 | MS.gene36880:CDS |
| AAGCACTTGACTGAGCTAAA+GGG | 0.535423 | 8.4:+63830799 | None:intergenic |
| AAGCACTTGACTGAGCTAAA+GGG | 0.535423 | 8.4:+63833293 | None:intergenic |
| GGGACCCGTGATGATTCTCT+AGG | 0.536509 | 8.4:+63829477 | None:intergenic |
| TTGTCTTATCAACTGAGTCT+CGG | 0.537380 | 8.4:+63860182 | None:intergenic |
| ATTTATGGAGCAGTGAAGGC+TGG | 0.539511 | 8.4:-63858439 | MS.gene36880:CDS |
| CTGCAATGTGCACGTTACTA+GGG | 0.542697 | 8.4:+63829457 | None:intergenic |
| CTCATGGTAGAGGATATTAT+GGG | 0.544269 | 8.4:-63861613 | MS.gene36880:CDS |
| CCTTCAGAGTAATCATAATG+TGG | 0.544518 | 8.4:+63861929 | None:intergenic |
| TGTTTGATGAGTACCTTAGT+CGG | 0.545511 | 8.4:+63829213 | None:intergenic |
| GAGGCAAGGGAATTTCCTAC+AGG | 0.546922 | 8.4:-63861719 | MS.gene36880:CDS |
| AAGGAATTGATGCTAAAGAA+GGG | 0.547387 | 8.4:-63828864 | MS.gene36880:CDS |
| CTCACAACTCTATAGGTGCC+AGG | 0.549128 | 8.4:+63831273 | None:intergenic |
| CCTCCTACATCTTTACCTCA+TGG | 0.550484 | 8.4:-63830118 | MS.gene36880:CDS |
| AGATTGTTGACGCAGGATAC+CGG | 0.551441 | 8.4:-63829371 | MS.gene36880:intron |
| TAATTTGATTCTTACCGGCA+AGG | 0.551993 | 8.4:+63830075 | None:intergenic |
| CGTTCAAAATGACTTTGTTG+AGG | 0.556063 | 8.4:+63830567 | None:intergenic |
| CGTTCAAAATGACTTTGTTG+AGG | 0.556063 | 8.4:+63833061 | None:intergenic |
| TGACATTTATGGAGCAGTGA+AGG | 0.557111 | 8.4:-63858443 | MS.gene36880:CDS |
| AATTTATCATCTCATGGTAG+AGG | 0.558707 | 8.4:-63861623 | MS.gene36880:CDS |
| GTTAGTAGTTCTCTCTCCCT+CGG | 0.562193 | 8.4:+63861106 | None:intergenic |
| ATACAATGTTAATGATAGAT+CGG | 0.562572 | 8.4:-63833404 | MS.gene36880:CDS |
| CCAGAAAACGCAATGCCGTA+CGG | 0.562580 | 8.4:-63829096 | MS.gene36880:CDS |
| TAACATTGTATGCTCGTCGC+GGG | 0.563151 | 8.4:+63833416 | None:intergenic |
| AATGGAAATTTATCATCTCA+TGG | 0.563505 | 8.4:-63861629 | MS.gene36880:CDS |
| AGGCATAATTCCACGTGACT+CGG | 0.565327 | 8.4:+63861880 | None:intergenic |
| GCAACCTTCATGCGTATCAC+CGG | 0.567338 | 8.4:-63863380 | MS.gene36880:CDS |
| TTTGAGTCAAGTAGTAGTGA+AGG | 0.568566 | 8.4:+63861830 | None:intergenic |
| GAACTTAGAGATCTATGTAA+CGG | 0.570755 | 8.4:-63861797 | MS.gene36880:CDS |
| ACTCCATGAGGTAAAGATGT+AGG | 0.574348 | 8.4:+63830115 | None:intergenic |
| CCACCACGTGGTTCTCCACA+AGG | 0.577108 | 8.4:-63861743 | MS.gene36880:CDS |
| AAAGAGGAAAGTGAAGTACT+TGG | 0.577505 | 8.4:-63832868 | MS.gene36880:CDS |
| CATGCGTATCACCGGAGCAA+CGG | 0.590064 | 8.4:-63863372 | MS.gene36880:CDS |
| CAAAACCGCGCCGAGTCACG+TGG | 0.593095 | 8.4:-63861890 | MS.gene36880:CDS |
| ATTGTTGTTCGAATGCCGGA+CGG | 0.596739 | 8.4:-63859239 | MS.gene36880:CDS |
| GGACCCGTGATGATTCTCTA+GGG | 0.596825 | 8.4:+63829478 | None:intergenic |
| TGCTCCGGTGATACGCATGA+AGG | 0.599723 | 8.4:+63863376 | None:intergenic |
| AATCCAGGTTGATACTGATA+GGG | 0.600870 | 8.4:+63861674 | None:intergenic |
| AAAGAGGAAAGTAAAGTACT+TGG | 0.601216 | 8.4:-63861146 | MS.gene36880:CDS |
| AGGCCTTAGCAACAAGAATG+AGG | 0.602952 | 8.4:-63833365 | MS.gene36880:CDS |
| TGAGGTAAAGATGTAGGAGG+AGG | 0.604055 | 8.4:+63830121 | None:intergenic |
| ACCACGTGGTTCTCCACAAG+GGG | 0.608202 | 8.4:-63861741 | MS.gene36880:CDS |
| GAAGGTTGCGACGGATTCCG+GGG | 0.608307 | 8.4:+63863394 | None:intergenic |
| TCGGCTACCTTGAATGAAGT+AGG | 0.608862 | 8.4:-63833385 | MS.gene36880:CDS |
| TCACCCTATCAGTATCAACC+TGG | 0.609062 | 8.4:-63861677 | MS.gene36880:CDS |
| GCTCATGCTTTATTAGCCGA+GGG | 0.610195 | 8.4:-63832844 | MS.gene36880:CDS |
| GCTCATGCTTTATTAGCCGA+GGG | 0.610195 | 8.4:-63861122 | MS.gene36880:CDS |
| TGCTAAAGAAGGGTTTAGCA+TGG | 0.615254 | 8.4:-63828854 | MS.gene36880:CDS |
| ACGTGGTTCTCCACAAGGGG+AGG | 0.620464 | 8.4:-63861738 | MS.gene36880:CDS |
| CTTCTAGCAGCATTGAACAA+AGG | 0.626567 | 8.4:+63861860 | None:intergenic |
| AATAACTGAGATGCTGAACT+GGG | 0.629129 | 8.4:+63860207 | None:intergenic |
| CACAAACAGATTGTTGACGC+AGG | 0.630058 | 8.4:-63829378 | MS.gene36880:CDS |
| ACGGGCTTCTGCCCTATGCA+CGG | 0.632580 | 8.4:+63829434 | None:intergenic |
| GTTGTTCGAATGCCGGACGG+TGG | 0.634608 | 8.4:-63859236 | MS.gene36880:CDS |
| CGTTCATGATGAAGATGCAG+AGG | 0.638826 | 8.4:-63833266 | MS.gene36880:CDS |
| CACCACGTGGTTCTCCACAA+GGG | 0.639472 | 8.4:-63861742 | MS.gene36880:CDS |
| GATGCAAAAGCAGTGGCAGA+TGG | 0.640006 | 8.4:-63829534 | MS.gene36880:CDS |
| CCATGAGGTAAAGATGTAGG+AGG | 0.640081 | 8.4:+63830118 | None:intergenic |
| AAAGCAGTGGCAGATGGTGA+TGG | 0.640689 | 8.4:-63829528 | MS.gene36880:CDS |
| AACTACCTCTAGTTTCTGAA+CGG | 0.640846 | 8.4:+63863340 | None:intergenic |
| CACTAACAGAAGCAAACTAG+AGG | 0.646420 | 8.4:-63861084 | MS.gene36880:intron |
| AATGCTGATCCCAAAAGGCA+GGG | 0.648598 | 8.4:-63832058 | MS.gene36880:CDS |
| AATGCTGATCCCAAAAGGCA+GGG | 0.648598 | 8.4:-63860234 | MS.gene36880:CDS |
| ACGTGTTCATGAAGATGCAG+AGG | 0.649063 | 8.4:-63861543 | MS.gene36880:CDS |
| TAATTCCACGTGACTCGGCG+CGG | 0.652100 | 8.4:+63861885 | None:intergenic |
| TTCTAGAAGGAACTATGAAG+AGG | 0.652223 | 8.4:-63829412 | MS.gene36880:CDS |
| AACTGACCAAGATTGTTCAA+GGG | 0.653454 | 8.4:-63829056 | MS.gene36880:CDS |
| CAGACCCTAGAGAATCATCA+CGG | 0.653536 | 8.4:-63829482 | MS.gene36880:CDS |
| GATGATTCTATTTGAAAACG+AGG | 0.654761 | 8.4:-63829261 | MS.gene36880:CDS |
| ATTTCATATTGTACTCCATG+AGG | 0.657234 | 8.4:+63830103 | None:intergenic |
| TTCAGAGTAATCATAATGTG+GGG | 0.657987 | 8.4:+63861931 | None:intergenic |
| CTAGGTTGATGCAAAAGCAG+TGG | 0.660141 | 8.4:-63829541 | MS.gene36880:intron |
| AGACCCTAGAGAATCATCAC+GGG | 0.670929 | 8.4:-63829481 | MS.gene36880:CDS |
| TATGCAGGTGCTGATACCAA+TGG | 0.672316 | 8.4:-63861647 | MS.gene36880:CDS |
| CACCAACAGAAGCAAACTAG+AGG | 0.674312 | 8.4:-63832809 | MS.gene36880:intron |
| TTAACATTGTATGCTCGTCG+CGG | 0.674332 | 8.4:+63833415 | None:intergenic |
| TCAACTGGAGTATGTGACAG+TGG | 0.679694 | 8.4:+63830157 | None:intergenic |
| GATACGCATGAAGGTTGCGA+CGG | 0.683268 | 8.4:+63863385 | None:intergenic |
| CGTCGCCGTTCAGAAACTAG+AGG | 0.683941 | 8.4:-63863345 | MS.gene36880:intron |
| TGTGCACTATTGATCCCTGT+AGG | 0.694302 | 8.4:+63861704 | None:intergenic |
| AGGCAAGGGAATTTCCTACA+GGG | 0.721531 | 8.4:-63861718 | MS.gene36880:CDS |
| TCAAGTAGTACACCACCACG+TGG | 0.740632 | 8.4:-63861755 | MS.gene36880:CDS |
| CCTTGTGGAGAACCACGTGG+TGG | 0.741616 | 8.4:+63861743 | None:intergenic |
| TCCCCTTGTGGAGAACCACG+TGG | 0.753351 | 8.4:+63861740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 63828604 | 63863429 | 63828604 | ID=MS.gene36880 |
| chr8.4 | mRNA | 63828604 | 63863429 | 63828604 | ID=MS.gene36880.t1;Parent=MS.gene36880 |
| chr8.4 | exon | 63863346 | 63863429 | 63863346 | ID=MS.gene36880.t1.exon1;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63863346 | 63863429 | 63863346 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63862116 | 63862174 | 63862116 | ID=MS.gene36880.t1.exon2;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63862116 | 63862174 | 63862116 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63861469 | 63861982 | 63861469 | ID=MS.gene36880.t1.exon3;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63861469 | 63861982 | 63861469 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63861296 | 63861379 | 63861296 | ID=MS.gene36880.t1.exon4;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63861296 | 63861379 | 63861296 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63861085 | 63861207 | 63861085 | ID=MS.gene36880.t1.exon5;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63861085 | 63861207 | 63861085 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63860176 | 63860385 | 63860176 | ID=MS.gene36880.t1.exon6;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63860176 | 63860385 | 63860176 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63859978 | 63860097 | 63859978 | ID=MS.gene36880.t1.exon7;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63859978 | 63860097 | 63859978 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63859196 | 63859339 | 63859196 | ID=MS.gene36880.t1.exon8;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63859196 | 63859339 | 63859196 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63858426 | 63858482 | 63858426 | ID=MS.gene36880.t1.exon9;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63858426 | 63858482 | 63858426 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63833192 | 63833449 | 63833192 | ID=MS.gene36880.t1.exon10;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63833192 | 63833449 | 63833192 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63833018 | 63833101 | 63833018 | ID=MS.gene36880.t1.exon11;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63833018 | 63833101 | 63833018 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63832810 | 63832929 | 63832810 | ID=MS.gene36880.t1.exon12;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63832810 | 63832929 | 63832810 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63832000 | 63832209 | 63832000 | ID=MS.gene36880.t1.exon13;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63832000 | 63832209 | 63832000 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63831804 | 63831923 | 63831804 | ID=MS.gene36880.t1.exon14;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63831804 | 63831923 | 63831804 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63831278 | 63831334 | 63831278 | ID=MS.gene36880.t1.exon15;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63831278 | 63831334 | 63831278 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63830698 | 63830829 | 63830698 | ID=MS.gene36880.t1.exon16;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63830698 | 63830829 | 63830698 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63830524 | 63830607 | 63830524 | ID=MS.gene36880.t1.exon17;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63830524 | 63830607 | 63830524 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63830090 | 63830203 | 63830090 | ID=MS.gene36880.t1.exon18;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63830090 | 63830203 | 63830090 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63829372 | 63829559 | 63829372 | ID=MS.gene36880.t1.exon19;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63829372 | 63829559 | 63829372 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63829227 | 63829283 | 63829227 | ID=MS.gene36880.t1.exon20;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63829227 | 63829283 | 63829227 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63828972 | 63829131 | 63828972 | ID=MS.gene36880.t1.exon21;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63828972 | 63829131 | 63828972 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63828815 | 63828883 | 63828815 | ID=MS.gene36880.t1.exon22;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63828815 | 63828883 | 63828815 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| chr8.4 | exon | 63828604 | 63828696 | 63828604 | ID=MS.gene36880.t1.exon23;Parent=MS.gene36880.t1 |
| chr8.4 | CDS | 63828604 | 63828696 | 63828604 | ID=cds.MS.gene36880.t1;Parent=MS.gene36880.t1 |
| Gene Sequence |
| Protein sequence |
