AlfalfaGEDB | MS.gene37610

M. sativa cultivar XinJiangDaYe / MS.gene37610

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF03822.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37610.t1	XP_003617145.1	99.5	441	2	0	1	441	1	441	1.40E-252	881.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37610.t1	Q2V452	82.4	437	76	1	5	441	6	441	5.5e-213	741.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37610.t1	G7K7Q8	99.5	441	2	0	1	441	1	441	1.0e-252	881.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene029577	MS.gene37610	PPI
MS.gene060496	MS.gene37610	PPI
MS.gene065678	MS.gene37610	PPI
MS.gene08994	MS.gene37610	PPI
MS.gene25646	MS.gene37610	PPI
MS.gene31098	MS.gene37610	PPI
MS.gene37610	MS.gene007010	PPI
MS.gene37610	MS.gene82021	PPI
MS.gene37610	MS.gene067322	PPI
MS.gene37610	MS.gene067321	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene37610.t1	MTR_5g088350	99.546	441	2	0	1	441	1	441	913
MS.gene37610.t1	MTR_5g088350	98.985	394	4	0	1	394	1	394	811
MS.gene37610.t1	MTR_5g088350	99.700	333	1	0	1	333	1	333	696
MS.gene37610.t1	MTR_8g024600	68.372	430	132	3	4	432	8	434	622
MS.gene37610.t1	MTR_2g049790	66.667	432	137	4	7	432	17	447	612
MS.gene37610.t1	MTR_8g024590	67.916	427	132	4	7	432	11	433	602
MS.gene37610.t1	MTR_4g114670	58.837	430	171	3	5	430	3	430	555
MS.gene37610.t1	MTR_5g067150	57.110	436	181	3	6	437	2	435	533
MS.gene37610.t1	MTR_8g024600	70.056	354	102	3	80	432	1	351	520
MS.gene37610.t1	MTR_4g114670	55.814	430	171	4	5	430	3	417	519

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene37610.t1	AT2G26980	82.380	437	76	1	5	441	6	441	764
MS.gene37610.t1	AT2G26980	82.380	437	76	1	5	441	16	451	764
MS.gene37610.t1	AT5G21326	79.118	431	90	0	1	431	1	431	726
MS.gene37610.t1	AT2G26980	80.590	407	74	1	5	411	6	407	691
MS.gene37610.t1	AT2G26980	83.424	368	61	0	5	372	6	373	657
MS.gene37610.t1	AT1G30270	71.034	435	119	4	10	438	28	461	648
MS.gene37610.t1	AT1G30270	71.034	435	119	4	10	438	28	461	646
MS.gene37610.t1	AT1G01140	68.109	439	137	3	2	438	8	445	637
MS.gene37610.t1	AT1G01140	67.800	441	137	4	2	438	8	447	631
MS.gene37610.t1	AT1G01140	67.494	443	137	4	2	438	8	449	630

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Find 95 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTCAACAAGCTTGC+AGG	0.333963	5.3:-71167357	MS.gene37610:CDS
AAACCTTAATGTTGCCACAG+AGG	0.668073	5.3:-71168094	MS.gene37610:intron
AAACTTTCAACAAGCTTGCA+GGG	0.553123	5.3:-71167356	MS.gene37610:CDS
AAATGTTGTTCGACTATATG+AGG	0.404071	5.3:-71171344	MS.gene37610:intron
AAATTTGTTTGATGTTGAAC+AGG	0.448519	5.3:-71168945	MS.gene37610:intron
AACCTGCAATCAATACAAAG+AGG	0.628440	5.3:+71170164	None:intergenic
AACCTTAAAGTCTCCGATTT+TGG	0.136576	5.3:-71170545	MS.gene37610:CDS
AAGGTAAACCATGGACGGAT+GGG	0.634281	5.3:-71170796	MS.gene37610:CDS
AAGGTTCAGCCCTCTAGACA+TGG	0.554908	5.3:+71168970	None:intergenic
AATCAACTCAAATGCATTCA+TGG	0.391948	5.3:+71168994	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGGGTCATGATTTG+TGG	+	chr5.3:71168161-71168180	None:intergenic	30.0%
AAATGTTGTTCGACTATATG+AGG	-	chr5.3:71167752-71167771	MS.gene37610:intron	30.0%
AATCAACTCAAATGCATTCA+TGG	+	chr5.3:71170105-71170124	None:intergenic	30.0%
AATGATGTTTCTTACAGTCA+TGG	+	chr5.3:71169174-71169193	None:intergenic	30.0%
AATTGAAAGAGTAAAACTGG+AGG	+	chr5.3:71169033-71169052	None:intergenic	30.0%
AGACGAAGAATTCAAATACA+AGG	-	chr5.3:71170633-71170652	MS.gene37610:intron	30.0%
ATAAGATTAGGGTCATCAAA+AGG	+	chr5.3:71168963-71168982	None:intergenic	30.0%
ATCACAATCATGGAATATCT+CGG	+	chr5.3:71170205-71170224	None:intergenic	30.0%
ATGATCAAAATAGGGTTGTT+TGG	+	chr5.3:71170554-71170573	None:intergenic	30.0%
ATGATGTTTCTTACAGTCAT+GGG	+	chr5.3:71169173-71169192	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	71167307	71171811	71167307	ID=MS.gene37610
chr5.3	mRNA	71167307	71171811	71167307	ID=MS.gene37610.t1;Parent=MS.gene37610
chr5.3	exon	71171641	71171811	71171641	ID=MS.gene37610.t1.exon1;Parent=MS.gene37610.t1
chr5.3	CDS	71171641	71171811	71171641	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71171345	71171407	71171345	ID=MS.gene37610.t1.exon2;Parent=MS.gene37610.t1
chr5.3	CDS	71171345	71171407	71171345	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71171033	71171104	71171033	ID=MS.gene37610.t1.exon3;Parent=MS.gene37610.t1
chr5.3	CDS	71171033	71171104	71171033	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71170708	71170815	71170708	ID=MS.gene37610.t1.exon4;Parent=MS.gene37610.t1
chr5.3	CDS	71170708	71170815	71170708	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71170517	71170597	71170517	ID=MS.gene37610.t1.exon5;Parent=MS.gene37610.t1
chr5.3	CDS	71170517	71170597	71170517	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71170350	71170403	71170350	ID=MS.gene37610.t1.exon6;Parent=MS.gene37610.t1
chr5.3	CDS	71170350	71170403	71170350	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71170120	71170245	71170120	ID=MS.gene37610.t1.exon7;Parent=MS.gene37610.t1
chr5.3	CDS	71170120	71170245	71170120	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71169940	71170029	71169940	ID=MS.gene37610.t1.exon8;Parent=MS.gene37610.t1
chr5.3	CDS	71169940	71170029	71169940	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71169154	71169276	71169154	ID=MS.gene37610.t1.exon9;Parent=MS.gene37610.t1
chr5.3	CDS	71169154	71169276	71169154	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71168946	71169056	71168946	ID=MS.gene37610.t1.exon10;Parent=MS.gene37610.t1
chr5.3	CDS	71168946	71169056	71168946	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71168250	71168363	71168250	ID=MS.gene37610.t1.exon11;Parent=MS.gene37610.t1
chr5.3	CDS	71168250	71168363	71168250	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71168095	71168151	71168095	ID=MS.gene37610.t1.exon12;Parent=MS.gene37610.t1
chr5.3	CDS	71168095	71168151	71168095	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71167937	71168011	71167937	ID=MS.gene37610.t1.exon13;Parent=MS.gene37610.t1
chr5.3	CDS	71167937	71168011	71167937	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1
chr5.3	exon	71167307	71167387	71167307	ID=MS.gene37610.t1.exon14;Parent=MS.gene37610.t1
chr5.3	CDS	71167307	71167387	71167307	ID=cds.MS.gene37610.t1;Parent=MS.gene37610.t1

Gene Sequence

>MS.gene37610

ATGAGTCAGCCTAAAATTAAGCGTAGAGTCGGTATATATGAGGTTGGAAGGACCATTGGTGAGGGAACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACAGGTGAAGCCGTGGCTCTCAAAATTCTTGACAAAGAGAAAGTTCTCAAGCACAAGATGGCTGAGCAGGTGGTTTTCGGAGATTTCCTTTAGTCCTTTTCTTCATTTAATTCTTGAAAAACATACATTTATATGACATAATTGTTTGCTGTATGAGCTGCACTTGCCCTTAGTCCTGTTTTCAAAATTCAGTTTTCATGCATGATATTTTCTTTCCATCAAATTTTGTTCATTCCAAACAAACACTTAGACTCTCGCAGGATGAAGTCAAGTCTCTTATATGTTTGAATGTGTTTTTTCAGATCAAGAGGGAAATTGCTACCATGAAGTTAATCAAGCATCCAAATGTTGTTCGACTATATGAGGTTGCTGACATGATGACATTTCTTTTCATTAATCTCACTAACCTTCCAGATATTAAATTTGATGATAGTGCTGTCTTGTTTGCGTATCCTCTAGCATTTTCACTAGTACATACCTTCCAACGAAACAGAATTTACTTGATTAGGAAGTAAATCTGCAATAAGAGAAGTCAAATTCATTCTCAACACAGTTTACTCTTTTGTCAAATTCTGATTCTAATGTCGAAACATTTTTGCTTACAGGTCATGGGAAGCAGGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGCGGGGAGCTTTTCGACAAAATTGTGAGTAAATGAAATCTTGTTTTTTCATTTTCAATCAGTTCAAAATGGTGATTAATTGGCCACATTTGGAGTCCACAAATCATGACCCTTATTTTCTTATTCAATCATAATCTGTTGGTGTTCTAAATGTCGTTGCGTTGAATCAAAATACATGAATTCCATCTTTAACTATACGGGAAAAAAATTGTATGTGTCTAATGGAATTTTTGTTGTGAAGGTAAACCATGGACGGATGGGTGAACCTGAAGCACGTAGGTATTTCCAGCAGCTTATAAATGTTGTTGACTATTGTCACAGCAGAGGTGTCTATCACAGAGATCTGAAGGTAAGAGCCATTTGTGAGACATTCATATATGCTGATGCTAGAACATGTATTGATATAATAAAAAAAGTAAACTAACATAAATTTCATTGGTATTCATGAACTTTGTGCAGCCAGAAAATTTGCTATTAGATGCTTATGGTAACCTTAAAGTCTCCGATTTTGGATTGAGTGCACTCTCCCAGCAAGTTAGGGTAAGCATGGTCCATTGCCTTCTGAGTTTTTCTTTTCTTGGTTGTTATACTCGATGAAGTTATCATGCATCAAACCGGTTTATTCATATCTTACAAAATGGTTGTCTTTACAGGATGACGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCAGAGGTGAAGACAAACGCCGCATTATTTCATGTTACTTTGTCGTGTGTATTTCTAAATTCATATATTGAGTCACTTTCTAACTATATATATTCTTGTTATATATATAGGTTCTTAATGATAGAGGCTATGATGGGGCAACTGCAGACTTGTGGTCTTGTGGAGTGATCCTCTTTGTATTGATTGCAGGTTACTTGCCTTTTGATGACCCTAATCTTATGGAACTGTATAAAAAAGTGAGTGCGCACCATTTGAACATTTTTCCCCCCTCCAGTTTTACTCTTTCAATTGTTTTCATTTTATGACTTTCGTTTCTTGATCCACAGATCTCGTCTGCTGATTTTACTTGCCCCCCGTGGCTTTCTTTCAGCGCGAGGAAATTGATAACTCGAATCTTGGATCCCAATCCCATGACTGTAAGAAACATCATTTTATTATCTGTCTGCTACTTGTCATGTAAATTGGCTGTTTGTAATCCTGTGTTATCAATTGCTGATCTCAAATTTTGCTACGCAACAGTGCTATAGCGTCGCTATTTGACAACATTTTGTACTAAATAACATATCACGGAACAATAGCGACTTGTTCAAATCAAGCTATGCTATGGTGCTGTTTGGCCACCTTTTAGTAATATAGTTGTAGTTTATCGATTGTAAAGGCTAATCTGGTCCCCTGTAGTCTGCATCGGTTTGATTGCATGGTTATGTAAATCACGCTAATAGATCTTTTTGGGCCAGTTTGGTTTGAGAAAACTTTATCTATTTTTATTTTTTGTTTTCACTTTTAATTGAAAAATTTCCCCTTGTTTTCAAAAATTTGTAATAGTGAAAACAGAAGACAGAGTTAAAATAAGGGTCAGCTTTGCAATTAAAAGCGAAAACAATAAATAAAAACAGTTAATGTTTTCTCAAACCAAACAGTAGAAGCACATTTAGCTACTCCCCTGCTCCAACAAAAGGCTAAAGAGAAAAAAGAAAAAAAGAAAAAAACTAATCATCAATCTACATTGTCATGTTTGTTTTTACGTAAACTAGCTAAATTTTTGCCTACGAATCTGACTTACCTCAACTGTTTGGCAGCGTATCACTATGGCTGAGATTTTGGACGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAAAGCGGGGAAACCAACCTCGACGATGTAGAAGCCGTCTTTAAAGATTCGGAAGTACGTTGAAGATTTTTTAAATATGGTTTTGATATTTGATTTTATTTAAGTTCTGGAACATTGTATCATAAAGGATTTTGTCTATATATATTCACAGGAGCACCATGTGACAGAAAAGAAAGAAGAGCAGCCAACATCCATGAATGCATTTGAGTTGATTTCCATGTCTAGAGGGCTGAACCTTGAAAATTTGTTTGATGTTGAACAGGTTTGCAAGTTAACATAATAAGTTTCTTTCCGAGATATTCCATGATTGTGATGAATATTTAAGCTTTGTTTGGGAAAAAGTAGCACATGATAAATAAGCTAGCTAATGGCTGATGAATTTATAACTGATAGCATATAAGCTAGCTTATAGATGATGGCGGATAAGCTAGCTGATTGAATTTGAAATGTTTTTAATTGATAAATACAAATGACATAAAATATATATGTTGAATTAATGTTTAAAGTTTTCAAATAAAGATCATGAGGGTAAAAATAGAGAAAAATGATACACTGCAAGGTCGGTCAATTACTACTTGGTACAATCTCAAAAAACACCGTTAGTTAAAAAATGCTTTAAGCTCGTGAGAGAATATCGTTACCAAACAACCCTATTTTGATCATACAAGCTTAAACACTAAAAACTTTCTGTTATAAGCTAGCTGTTTGGCCTTTTCAAAAAGAGACGAAGAATTCAAATACAAGGAAAAGCATGCATATTCATTTTAACATATAAACGAGCATTTTGGTTTTGTTAAAACTAGTTAACTTTGTGTTGCTTTATTCTTTATGTCATTGACTATAGGGTTTTAAAAGGGAAACAAGGTTCACGTCGCAATCTCCTGCAGACGAGATAATCAACAAGATTGAAGAAGCTGCTAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTTCAAGGTAAGCCATACTTTTTGCAACTCAACGTCAGCTTGTACTCGAACATATGGCTATAGATTTAATGATGTTTTGTGAAATTAATAAACCATTACCTGCAGATGAGGCTTGCAAATTCGAAAGCTGGAAGGAAAGGAAACCTTAATGTTGCCACAGAGGTATATGATCTTCATTTTTGTGTTTTTGTAACATGGTACACTTTTATGTCATATTCTTGTATTAAGGTTGTCATTGTAAATAGGTATTTCAAGTGGCACCTTCTCTTCACATGGTTGAAGTAAGGAAAGCAAAAGGAGATACGTTGGAGTTCCATAAGGTTTCCTTCTACCCCTTTTTTTGTTTAATTATTCTACATTTTCTGATGAATTTAATTGATATGCATTGACAGTGTAAATATAATCATTTGAAAATATTTGACTCAAATCATATACACCTTAGAAGTCCTACAAATGATGTTTTGTAATTGGTTGGCAGTGTAAAAAGTTTCACACTGAGAGTGCATCAAAATTAAACTTTTTTCTGACTCCCATATTTCAAAAATAAATGTTCTACGCCATGATAATATGTGAATTGTGACAACTATGCATTGACAGTGTAGACAAATTTGTACACAGACATCCAATCATATTTCATTTTTTTCCATGTCATAATATTCCAATCATATTTCACTTTTTGCAACATCGTGATATAATTTCTTAAAACATGCAAGAATTGTGCCGAGATAGTAAAATATAATTGAATGCGTGTGTATAACATACTTATACTGTTCGTGTAAAATTATTTAAGTCATAATATATCATGATAACAGAATTTGTCCGCATCACTTTGAAATCTAATTGGAAACCATTTGCCTCACCCTTTGCAGTTCTACAAAAAACTTTCAACAAGCTTGCAGGGTGTTGTTTGGAAAACAGAAGATGATATGCAAAAGCAATGTGCTAAATGA

Protein sequence

>MS.gene37610.t1

MSQPKIKRRVGIYEVGRTIGEGTFAKVKFARNSETGEAVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSRTKIYIVLEFVTGGELFDKIVNHGRMGEPEARRYFQQLINVVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLIAGYLPFDDPNLMELYKKISSADFTCPPWLSFSARKLITRILDPNPMTRITMAEILDDEWFKKDYKPPVFEESGETNLDDVEAVFKDSEEHHVTEKKEEQPTSMNAFELISMSRGLNLENLFDVEQGFKRETRFTSQSPADEIINKIEEAAKPLGFDVQKKNFKMRLANSKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLQGVVWKTEDDMQKQCAK