AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37647

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37647.t1 MTR_4g009620 94.542 568 29 2 1 566 1 568 0.0 1050
MS.gene37647.t1 MTR_4g009590 74.956 571 136 7 1 566 1 569 0.0 848
MS.gene37647.t1 MTR_4g009340 74.552 558 137 5 1 554 1 557 0.0 804
MS.gene37647.t1 MTR_7g017620 60.036 553 210 8 1 551 1 544 0.0 662
MS.gene37647.t1 MTR_2g041180 32.821 195 117 4 6 198 15 197 1.60e-21 98.2
MS.gene37647.t1 MTR_2g036320 29.545 264 168 6 20 277 46 297 1.69e-19 92.4
MS.gene37647.t1 MTR_5g086230 32.530 166 106 5 43 205 29 191 2.83e-17 80.9
MS.gene37647.t1 MTR_5g086340 33.831 201 114 9 370 563 257 445 5.55e-17 84.0
MS.gene37647.t1 MTR_5g086340 30.622 209 122 7 43 244 33 225 1.34e-15 79.7
MS.gene37647.t1 MTR_5g016570 31.579 171 105 6 21 186 78 241 7.82e-17 84.0
MS.gene37647.t1 MTR_5g087580 30.688 189 123 5 370 556 38 220 8.07e-17 80.1
MS.gene37647.t1 MTR_8g005235 35.000 160 89 6 42 197 27 175 2.93e-15 78.6
MS.gene37647.t1 MTR_5g086260 31.217 189 111 8 376 556 137 314 3.03e-15 77.4
MS.gene37647.t1 MTR_8g005295 32.620 187 112 4 25 197 19 205 4.11e-15 78.6
MS.gene37647.t1 MTR_8g005295 29.487 156 109 1 386 541 348 502 8.92e-12 68.2
MS.gene37647.t1 MTR_7g060840 30.102 196 126 5 359 547 241 432 1.88e-14 76.3
MS.gene37647.t1 MTR_6g011060 25.294 170 111 2 43 212 26 179 5.08e-14 74.7
MS.gene37647.t1 MTR_6g011060 26.857 175 127 1 374 547 244 418 2.73e-11 66.2
MS.gene37647.t1 MTR_8g006525 30.808 198 117 7 42 230 28 214 9.83e-14 73.9
MS.gene37647.t1 MTR_7g011980 28.814 177 119 2 375 547 168 341 2.48e-13 72.0
MS.gene37647.t1 MTR_8g005325 32.298 161 92 5 42 197 56 204 3.22e-13 72.4
MS.gene37647.t1 MTR_8g005325 29.851 134 93 1 406 539 330 462 8.60e-12 67.8
MS.gene37647.t1 MTR_8g005285 31.176 170 103 4 42 197 36 205 6.74e-13 71.6
MS.gene37647.t1 MTR_8g005285 31.250 144 95 2 398 541 349 488 2.90e-12 69.7
MS.gene37647.t1 MTR_6g010920 26.282 156 99 4 43 198 26 165 1.06e-12 70.5
MS.gene37647.t1 MTR_0209s0060 31.646 158 94 6 42 195 29 176 1.08e-12 70.5
MS.gene37647.t1 MTR_0209s0030 31.646 158 94 6 42 195 29 176 1.08e-12 70.5
MS.gene37647.t1 MTR_6g009590 26.875 160 93 4 43 198 26 165 1.30e-12 70.1
MS.gene37647.t1 MTR_6g009590 29.050 179 126 1 370 547 232 410 2.59e-12 69.3
MS.gene37647.t1 MTR_7g060080 32.414 145 96 2 405 548 49 192 1.73e-12 67.0
MS.gene37647.t1 MTR_6g010890 28.261 184 123 3 372 547 243 425 2.01e-12 69.7
MS.gene37647.t1 MTR_3g079390 29.885 174 119 2 376 547 277 449 2.36e-12 69.7
MS.gene37647.t1 MTR_8g005225 29.448 163 111 4 385 547 297 455 3.20e-12 69.3
MS.gene37647.t1 MTR_2g035640 27.485 171 122 2 374 543 175 344 4.23e-12 68.2
MS.gene37647.t1 MTR_6g011050 26.380 163 94 4 42 198 24 166 5.79e-12 68.2
MS.gene37647.t1 MTR_6g009610 25.000 156 101 3 43 198 26 165 6.04e-12 68.2
MS.gene37647.t1 MTR_6g009610 28.652 178 120 2 374 547 236 410 8.10e-11 64.7
MS.gene37647.t1 MTR_7g060310 30.496 141 96 2 408 547 348 487 9.65e-12 67.8
MS.gene37647.t1 MTR_6g009170 25.749 167 107 3 41 207 24 173 1.13e-11 67.4
MS.gene37647.t1 MTR_0024s0080 26.994 163 99 4 43 203 26 170 1.84e-11 66.6
MS.gene37647.t1 MTR_7g067970 28.743 167 109 4 41 200 28 191 2.09e-11 67.0
MS.gene37647.t1 MTR_3g466740 26.087 207 131 5 21 219 11 203 2.56e-11 66.6
MS.gene37647.t1 MTR_7g059480 30.282 142 97 2 408 548 634 774 2.84e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37647.t1 AT3G02645 46.139 518 235 10 16 525 16 497 4.70e-152 447
MS.gene37647.t1 AT3G50120 33.816 207 125 6 21 224 80 277 5.60e-27 115
MS.gene37647.t1 AT3G50120 28.022 182 125 4 374 552 350 528 2.20e-11 67.0
MS.gene37647.t1 AT3G50180 33.010 206 127 5 21 224 155 351 5.28e-26 112
MS.gene37647.t1 AT3G50180 29.121 182 121 5 374 549 403 582 1.36e-11 67.8
MS.gene37647.t1 AT3G50170 31.308 214 135 6 13 224 84 287 1.53e-25 109
MS.gene37647.t1 AT3G50170 32.093 215 132 7 13 224 84 287 5.50e-25 109
MS.gene37647.t1 AT3G50170 26.111 180 131 2 374 552 358 536 6.90e-12 68.6
MS.gene37647.t1 AT3G50150 31.250 208 130 7 21 224 67 265 1.10e-23 104
MS.gene37647.t1 AT3G50140 31.579 209 133 5 21 227 90 290 1.11e-23 103
MS.gene37647.t1 AT3G50140 31.579 209 133 5 21 227 90 290 1.40e-23 105
MS.gene37647.t1 AT3G50140 25.871 201 143 3 353 548 333 532 4.98e-12 68.9
MS.gene37647.t1 AT3G50150 31.250 208 130 7 21 224 67 265 2.27e-23 104
MS.gene37647.t1 AT3G50150 30.288 208 128 7 357 552 304 506 2.71e-16 82.4
MS.gene37647.t1 AT3G44710 23.494 498 310 14 58 548 64 497 2.37e-23 103
MS.gene37647.t1 AT3G50130 29.126 206 136 5 21 224 116 313 7.48e-23 102
MS.gene37647.t1 AT3G50160 31.250 208 124 7 20 225 81 271 2.39e-20 94.7
MS.gene37647.t1 AT3G50160 30.348 201 122 7 356 549 306 495 5.76e-14 75.1
MS.gene37647.t1 AT3G50190 31.383 188 120 5 21 206 73 253 3.80e-18 86.7
MS.gene37647.t1 AT3G50190 31.383 188 120 5 21 206 73 253 4.57e-18 86.7
MS.gene37647.t1 AT3G50190 31.383 188 120 5 21 206 73 253 4.57e-18 86.7
MS.gene37647.t1 AT3G50190 31.383 188 120 5 21 206 73 253 7.31e-18 87.0
MS.gene37647.t1 AT5G11290 31.677 161 95 3 41 198 32 180 1.42e-16 82.8
MS.gene37647.t1 AT3G47200 29.658 263 158 9 35 290 39 281 3.55e-16 81.6
MS.gene37647.t1 AT3G47200 29.658 263 158 9 35 290 39 281 3.55e-16 81.6
MS.gene37647.t1 AT3G47250 31.720 186 107 4 22 197 36 211 3.80e-16 81.6
MS.gene37647.t1 AT3G47250 31.720 186 107 4 22 197 36 211 3.80e-16 81.6
MS.gene37647.t1 AT3G47250 31.720 186 107 4 22 197 36 211 3.80e-16 81.6
MS.gene37647.t1 AT3G47210 34.356 163 99 3 35 197 86 240 8.04e-16 80.5
MS.gene37647.t1 AT4G31980 27.429 175 112 3 42 213 293 455 8.18e-16 81.3
MS.gene37647.t1 AT4G31980 29.143 175 119 4 375 547 506 677 5.79e-12 68.9
MS.gene37647.t1 AT2G36430 24.806 258 154 6 38 284 41 269 1.43e-15 79.7
MS.gene37647.t1 AT5G22550 29.333 225 139 9 34 252 36 246 4.43e-15 78.6
MS.gene37647.t1 AT5G22550 26.667 180 131 1 374 552 308 487 1.48e-12 70.5
MS.gene37647.t1 AT5G22560 25.564 266 167 7 11 257 13 266 1.73e-13 73.6
MS.gene37647.t1 AT5G22560 26.519 181 130 3 374 552 335 514 1.12e-11 67.8
MS.gene37647.t1 AT5G22550 26.667 180 131 1 374 552 259 438 1.74e-12 70.1
MS.gene37647.t1 AT5G22540 27.727 220 145 6 35 252 24 231 3.68e-12 68.9
MS.gene37647.t1 AT5G22540 26.966 178 129 1 376 552 258 435 1.36e-11 67.4
MS.gene37647.t1 AT2G28580 25.907 193 140 3 356 547 257 447 4.09e-11 65.9
MS.gene37647.t1 AT2G28580 25.907 193 140 3 356 547 325 515 5.05e-11 65.9
MS.gene37647.t1 AT2G28580 25.907 193 140 3 356 547 339 529 5.59e-11 65.9
MS.gene37647.t1 AT2G28580 25.907 193 140 3 356 547 308 498 5.74e-11 65.5
MS.gene37647.t1 AT2G28580 25.907 193 140 3 356 547 322 512 6.88e-11 65.5

Find 83 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCTCAAACTCTTCTTCT+AGG 0.153796 4.2:-90691966 None:intergenic
CAACCTTTGATGAGAATCTT+TGG 0.179806 4.2:+90691923 MS.gene37647:CDS
TGTTGTGGAACATAAGAATT+TGG 0.183132 4.2:-90692048 None:intergenic
GCAAAGATTCTAAGAGAAAA+AGG 0.234685 4.2:+90693245 MS.gene37647:CDS
AAGCTTTGGCACATTGAAAA+TGG 0.249135 4.2:-90692010 None:intergenic
CAATGTGCCAAAGCTTCTTA+TGG 0.260296 4.2:+90692017 MS.gene37647:CDS
CTTGATATGCTTCCATTTGT+AGG 0.267254 4.2:-90693047 None:intergenic
AGCATGCTACCACAAATTCT+TGG 0.287384 4.2:+90692224 MS.gene37647:CDS
CAATTGGTCCCTACCATTAT+TGG 0.314543 4.2:+90692076 MS.gene37647:CDS
TCATCTTCCCACAATTAGTT+TGG 0.323564 4.2:+90693100 MS.gene37647:CDS
GAAGAGTTTGAGGAGGAAAA+TGG 0.326776 4.2:+90691973 MS.gene37647:CDS
TGTTGATATTAATGTGTATA+AGG 0.328473 4.2:+90692511 MS.gene37647:CDS
TCAATAGTCTTATCCAAGTA+TGG 0.342784 4.2:-90693353 None:intergenic
ATCTTTCTCAAAACAAATAA+TGG 0.347136 4.2:-90692444 None:intergenic
TTTGTTCCAACTTTCTCAAT+TGG 0.347934 4.2:-90692194 None:intergenic
TTTATGAAGTCTTATGTGTT+TGG 0.373276 4.2:+90693425 MS.gene37647:CDS
ATACAATGAAGATCAAGATT+TGG 0.376198 4.2:+90693399 MS.gene37647:CDS
GCCTTTGCATGGAATCAAAA+AGG 0.377556 4.2:+90692788 MS.gene37647:CDS
CTTTCATGGCATAAAATTGA+AGG 0.378368 4.2:-90692308 None:intergenic
AACCTTTGATGAGAATCTTT+GGG 0.378384 4.2:+90691924 MS.gene37647:CDS
TAGAATCTTTGCATCGTTCT+CGG 0.385581 4.2:-90693234 None:intergenic
GTTGAACAACTTGTGATTGC+AGG 0.386181 4.2:+90693011 MS.gene37647:CDS
GAGTTTAAAAGGTGTTCAAT+AGG 0.391781 4.2:-90692897 None:intergenic
CTCCTCAAACTCTTCTTCTA+GGG 0.397644 4.2:-90691965 None:intergenic
GTTAATTTCTTACCTACAAA+TGG 0.403126 4.2:+90693035 MS.gene37647:CDS
AGAGTTCTTGACGCCAATAA+TGG 0.405296 4.2:-90692089 None:intergenic
ATCGGTTGGATCGGGACCTT+TGG 0.407115 4.2:+90693169 MS.gene37647:CDS
TGTTGACCAATTGAGAAAGT+TGG 0.426632 4.2:+90692188 MS.gene37647:CDS
ATATCCCTCAAAATTGCATT+AGG 0.430899 4.2:-90692399 None:intergenic
CACTCTAAGACTTGAATGTT+AGG 0.432592 4.2:-90692576 None:intergenic
AGTCTTATGTGTTTGGTTCA+TGG 0.433433 4.2:+90693432 MS.gene37647:CDS
ATTGTCAAGGGTGCCATACT+TGG 0.436193 4.2:+90693340 MS.gene37647:CDS
CACAAATTCTTGGATTTGAA+CGG 0.444811 4.2:+90692234 MS.gene37647:CDS
GAAAACATAACCAACCTTCC+AGG 0.449083 4.2:+90692855 MS.gene37647:CDS
CGTTCAAATCCAAGAATTTG+TGG 0.452276 4.2:-90692233 None:intergenic
TCACTAGCCATAAGAAGCTT+TGG 0.455256 4.2:-90692024 None:intergenic
ATACTCTTCAAACATCTTGA+AGG 0.456719 4.2:-90692553 None:intergenic
AAGCAAAATTAATTTGTGTC+CGG 0.458518 4.2:-90693569 None:intergenic
GTTCCACAACAAGTTGCAAT+TGG 0.462687 4.2:+90692060 MS.gene37647:CDS
AACCCTAGAAGAAGAGTTTG+AGG 0.465593 4.2:+90691963 MS.gene37647:CDS
TTGCTTTCAAAGTTAATCAA+AGG 0.473622 4.2:+90692765 MS.gene37647:CDS
TGCTTTCAAAGTTAATCAAA+GGG 0.475992 4.2:+90692766 MS.gene37647:CDS
TATGAATCATCGGTTGGATC+GGG 0.482387 4.2:+90693161 MS.gene37647:CDS
GGCACTAGAGCTTACATCTC+CGG 0.488018 4.2:+90693550 MS.gene37647:CDS
AAAGAACAAAACACCCTTGG+TGG 0.493519 4.2:+90692968 MS.gene37647:CDS
GGACCAATTGCAACTTGTTG+TGG 0.498583 4.2:-90692063 None:intergenic
AGTTGAGATTCAACAAGAAG+TGG 0.506414 4.2:+90692668 MS.gene37647:CDS
GGATTTGAACGGCGAAACCT+TGG 0.522838 4.2:+90692245 MS.gene37647:CDS
GTTCACATCCAAACTAATTG+TGG 0.522949 4.2:-90693108 None:intergenic
CGTTACACAGAATTGATGAA+TGG 0.524075 4.2:+90693200 MS.gene37647:CDS
CTTGGTTGCATATGAATCAT+CGG 0.528032 4.2:+90693151 MS.gene37647:CDS
AAGTTTGATTCCTGGAAGGT+TGG 0.528668 4.2:-90692865 None:intergenic
ATATGAATCATCGGTTGGAT+CGG 0.532054 4.2:+90693160 MS.gene37647:CDS
TTAATCAAAGGGCCTTTGCA+TGG 0.532931 4.2:+90692777 MS.gene37647:CDS
GTTTACAAAATGAGACATGT+TGG 0.533371 4.2:-90692355 None:intergenic
GTTGCATATGAATCATCGGT+TGG 0.535467 4.2:+90693155 MS.gene37647:CDS
CACCCAAAGATTCTCATCAA+AGG 0.543342 4.2:-90691926 None:intergenic
AAACTCTCAAAAGAAAGAAG+AGG 0.550779 4.2:+90692914 MS.gene37647:CDS
TTCACATCCAAACTAATTGT+GGG 0.553100 4.2:-90693107 None:intergenic
GAAGTGGCTAACATGTGGAA+TGG 0.555812 4.2:+90693299 MS.gene37647:CDS
TCTAAAGAACAAAACACCCT+TGG 0.564159 4.2:+90692965 MS.gene37647:CDS
TTGAACAACTTGTGATTGCA+GGG 0.565312 4.2:+90693012 MS.gene37647:CDS
ATCACAAGTTGTTCAACAGA+AGG 0.571806 4.2:-90693005 None:intergenic
CTTGGATAAGACTATTGAAG+AGG 0.583268 4.2:+90693358 MS.gene37647:CDS
TTACAAGTTTGATTCCTGGA+AGG 0.589208 4.2:-90692869 None:intergenic
GAACAAAACACCCTTGGTGG+AGG 0.589662 4.2:+90692971 MS.gene37647:CDS
TACTCTTCAAACATCTTGAA+GGG 0.594471 4.2:-90692552 None:intergenic
CAAGAAGTGGATCAACAAGA+AGG 0.599718 4.2:+90692681 MS.gene37647:CDS
TTCTTGACGCCAATAATGGT+AGG 0.599841 4.2:-90692085 None:intergenic
TGTCATGAACAAGAGGAAGA+TGG 0.606762 4.2:-90693477 None:intergenic
GCAAGGCTGTCATGAACAAG+AGG 0.607214 4.2:-90693484 None:intergenic
CAAGTCATTGAGATTGTCAA+GGG 0.609843 4.2:+90693328 MS.gene37647:CDS
ATAAAGAAGTGGCTAACATG+TGG 0.611887 4.2:+90693294 MS.gene37647:CDS
CCTAGAAGAAGAGTTTGAGG+AGG 0.616622 4.2:+90691966 MS.gene37647:CDS
GCAAGTCATTGAGATTGTCA+AGG 0.627588 4.2:+90693327 MS.gene37647:CDS
ATAGTGATTTCCTCCACCAA+GGG 0.631478 4.2:-90692981 None:intergenic
TCTTGACGCCAATAATGGTA+GGG 0.634295 4.2:-90692084 None:intergenic
ATGTCATCGCTTCTTTGACA+AGG 0.643036 4.2:+90693529 MS.gene37647:CDS
GTGTAACGAGTTATAACCAA+AGG 0.648298 4.2:-90693185 None:intergenic
AATAGTGATTTCCTCCACCA+AGG 0.656034 4.2:-90692982 None:intergenic
TGAACGGCGAAACCTTGGTG+TGG 0.667267 4.2:+90692250 MS.gene37647:CDS
AACAATCATCATCCACACCA+AGG 0.684599 4.2:-90692262 None:intergenic
TGAACAACTTGTGATTGCAG+GGG 0.724681 4.2:+90693013 MS.gene37647:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTTCTCAAAACAAATAA+TGG - chr4.2:90692447-90692466 None:intergenic 20.0%
!! TACTCAAAAATTTCTTAACA+TGG - chr4.2:90692734-90692753 None:intergenic 20.0%
!! TGTTGATATTAATGTGTATA+AGG + chr4.2:90692511-90692530 MS.gene37647:CDS 20.0%
!!! AGAAATTTTTGAGTATACTT+TGG + chr4.2:90692739-90692758 MS.gene37647:CDS 20.0%
!!! TGTTTTAGAATTATATGACA+TGG - chr4.2:90691905-90691924 None:intergenic 20.0%
! ATACAATGAAGATCAAGATT+TGG + chr4.2:90693399-90693418 MS.gene37647:CDS 25.0%
! CAAAAATTTCTTAACATGGA+TGG - chr4.2:90692730-90692749 None:intergenic 25.0%
! CCAAAATTAGAAAAACAACA+TGG + chr4.2:90692636-90692655 MS.gene37647:CDS 25.0%
! CTTAAAAAGTGATAAAGAAG+TGG + chr4.2:90693283-90693302 MS.gene37647:CDS 25.0%
! GTTAATTTCTTACCTACAAA+TGG + chr4.2:90693035-90693054 MS.gene37647:CDS 25.0%
! TGCTTTCAAAGTTAATCAAA+GGG + chr4.2:90692766-90692785 MS.gene37647:CDS 25.0%
! TTGCTTTCAAAGTTAATCAA+AGG + chr4.2:90692765-90692784 MS.gene37647:CDS 25.0%
!! CAAAGATTCTAAGAGAAAAA+GGG + chr4.2:90693246-90693265 MS.gene37647:CDS 25.0%
!! CAAGTTTCTAAGAAAAACTT+CGG - chr4.2:90693135-90693154 None:intergenic 25.0%
!! CTCATTTTGTAAACTATGTT+GGG + chr4.2:90692364-90692383 MS.gene37647:CDS 25.0%
!! TCTCATTTTGTAAACTATGT+TGG + chr4.2:90692363-90692382 MS.gene37647:CDS 25.0%
!! TTTATGAAGTCTTATGTGTT+TGG + chr4.2:90693425-90693444 MS.gene37647:CDS 25.0%
!!! AACTTTTTAAGGACTTTTAG+AGG - chr4.2:90692828-90692847 None:intergenic 25.0%
!!! CCATGTTGTTTTTCTAATTT+TGG - chr4.2:90692639-90692658 None:intergenic 25.0%
!!! CTTTCTTTTGAGAGTTTAAA+AGG - chr4.2:90692911-90692930 None:intergenic 25.0%
!!! CTTTTTTGATTCTTCTTTCA+TGG - chr4.2:90692325-90692344 None:intergenic 25.0%
AAACTCTCAAAAGAAAGAAG+AGG + chr4.2:90692914-90692933 MS.gene37647:CDS 30.0%
AACCTTTGATGAGAATCTTT+GGG + chr4.2:90691924-90691943 MS.gene37647:CDS 30.0%
AAGTCCTTAAAAAGTTACCT+TGG + chr4.2:90692832-90692851 MS.gene37647:CDS 30.0%
AGTCCTTAAAAAGTTACCTT+GGG + chr4.2:90692833-90692852 MS.gene37647:CDS 30.0%
ATACTCTTCAAACATCTTGA+AGG - chr4.2:90692556-90692575 None:intergenic 30.0%
ATATCCCTCAAAATTGCATT+AGG - chr4.2:90692402-90692421 None:intergenic 30.0%
CACAAATTCTTGGATTTGAA+CGG + chr4.2:90692234-90692253 MS.gene37647:CDS 30.0%
CTTTCATGGCATAAAATTGA+AGG - chr4.2:90692311-90692330 None:intergenic 30.0%
GTTTACAAAATGAGACATGT+TGG - chr4.2:90692358-90692377 None:intergenic 30.0%
TACTCTTCAAACATCTTGAA+GGG - chr4.2:90692555-90692574 None:intergenic 30.0%
TGTTGTGGAACATAAGAATT+TGG - chr4.2:90692051-90692070 None:intergenic 30.0%
TTCACATCCAAACTAATTGT+GGG - chr4.2:90693110-90693129 None:intergenic 30.0%
TTTGTTCCAACTTTCTCAAT+TGG - chr4.2:90692197-90692216 None:intergenic 30.0%
! ATCTCCTAATGCAATTTTGA+GGG + chr4.2:90692395-90692414 MS.gene37647:CDS 30.0%
! ATGGCAGTTTTTAACATTCT+TGG + chr4.2:90693451-90693470 MS.gene37647:CDS 30.0%
! ATTTTGTAAACTATGTTGGG+AGG + chr4.2:90692367-90692386 MS.gene37647:CDS 30.0%
! CGAAGTTTTTCTTAGAAACT+TGG + chr4.2:90693133-90693152 MS.gene37647:CDS 30.0%
! GCAAAGATTCTAAGAGAAAA+AGG + chr4.2:90693245-90693264 MS.gene37647:CDS 30.0%
! GTACTAGAGTTTTCATCTTT+TGG - chr4.2:90692945-90692964 None:intergenic 30.0%
! TATCTCCTAATGCAATTTTG+AGG + chr4.2:90692394-90692413 MS.gene37647:CDS 30.0%
! TGTTTTACAAGTTTGATTCC+TGG - chr4.2:90692876-90692895 None:intergenic 30.0%
! TTTCCCAAGGTAACTTTTTA+AGG - chr4.2:90692839-90692858 None:intergenic 30.0%
!! GAGTTTAAAAGGTGTTCAAT+AGG - chr4.2:90692900-90692919 None:intergenic 30.0%
!! TCAATAGTCTTATCCAAGTA+TGG - chr4.2:90693356-90693375 None:intergenic 30.0%
!! TGACACTTTGTAGTTGTTTT+TGG - chr4.2:90692155-90692174 None:intergenic 30.0%
AGTTGAGATTCAACAAGAAG+TGG + chr4.2:90692668-90692687 MS.gene37647:CDS 35.0%
ATAAAGAAGTGGCTAACATG+TGG + chr4.2:90693294-90693313 MS.gene37647:CDS 35.0%
ATCACAAGTTGTTCAACAGA+AGG - chr4.2:90693008-90693027 None:intergenic 35.0%
CAACCTTTGATGAGAATCTT+TGG + chr4.2:90691923-90691942 MS.gene37647:CDS 35.0%
CAAGTCATTGAGATTGTCAA+GGG + chr4.2:90693328-90693347 MS.gene37647:CDS 35.0%
CGTTACACAGAATTGATGAA+TGG + chr4.2:90693200-90693219 MS.gene37647:CDS 35.0%
CGTTCAAATCCAAGAATTTG+TGG - chr4.2:90692236-90692255 None:intergenic 35.0%
CTTGATATGCTTCCATTTGT+AGG - chr4.2:90693050-90693069 None:intergenic 35.0%
CTTGGATAAGACTATTGAAG+AGG + chr4.2:90693358-90693377 MS.gene37647:CDS 35.0%
CTTGGTTGCATATGAATCAT+CGG + chr4.2:90693151-90693170 MS.gene37647:CDS 35.0%
GTGTAACGAGTTATAACCAA+AGG - chr4.2:90693188-90693207 None:intergenic 35.0%
GTTCACATCCAAACTAATTG+TGG - chr4.2:90693111-90693130 None:intergenic 35.0%
TAGAATCTTTGCATCGTTCT+CGG - chr4.2:90693237-90693256 None:intergenic 35.0%
TCATCTTCCCACAATTAGTT+TGG + chr4.2:90693100-90693119 MS.gene37647:CDS 35.0%
TCTAAAGAACAAAACACCCT+TGG + chr4.2:90692965-90692984 MS.gene37647:CDS 35.0%
TGTTGACCAATTGAGAAAGT+TGG + chr4.2:90692188-90692207 MS.gene37647:CDS 35.0%
TTACAAGTTTGATTCCTGGA+AGG - chr4.2:90692872-90692891 None:intergenic 35.0%
TTGAACAACTTGTGATTGCA+GGG + chr4.2:90693012-90693031 MS.gene37647:CDS 35.0%
! AAGCTTTGGCACATTGAAAA+TGG - chr4.2:90692013-90692032 None:intergenic 35.0%
! AGTCTTATGTGTTTGGTTCA+TGG + chr4.2:90693432-90693451 MS.gene37647:CDS 35.0%
! ATATGAATCATCGGTTGGAT+CGG + chr4.2:90693160-90693179 MS.gene37647:CDS 35.0%
!! ACCTTTTTGATTCCATGCAA+AGG - chr4.2:90692792-90692811 None:intergenic 35.0%
!! CACTCTAAGACTTGAATGTT+AGG - chr4.2:90692579-90692598 None:intergenic 35.0%
AAAGAACAAAACACCCTTGG+TGG + chr4.2:90692968-90692987 MS.gene37647:CDS 40.0%
AACAATCATCATCCACACCA+AGG - chr4.2:90692265-90692284 None:intergenic 40.0%
AACCCTAGAAGAAGAGTTTG+AGG + chr4.2:90691963-90691982 MS.gene37647:CDS 40.0%
AAGTTTGATTCCTGGAAGGT+TGG - chr4.2:90692868-90692887 None:intergenic 40.0%
AATAGTGATTTCCTCCACCA+AGG - chr4.2:90692985-90693004 None:intergenic 40.0%
AGAGTTCTTGACGCCAATAA+TGG - chr4.2:90692092-90692111 None:intergenic 40.0%
AGCATGCTACCACAAATTCT+TGG + chr4.2:90692224-90692243 MS.gene37647:CDS 40.0%
ATAGTGATTTCCTCCACCAA+GGG - chr4.2:90692984-90693003 None:intergenic 40.0%
ATGTCATCGCTTCTTTGACA+AGG + chr4.2:90693529-90693548 MS.gene37647:CDS 40.0%
CAAGAAGTGGATCAACAAGA+AGG + chr4.2:90692681-90692700 MS.gene37647:CDS 40.0%
CAATGTGCCAAAGCTTCTTA+TGG + chr4.2:90692017-90692036 MS.gene37647:CDS 40.0%
CAATTGGTCCCTACCATTAT+TGG + chr4.2:90692076-90692095 MS.gene37647:CDS 40.0%
CACCCAAAGATTCTCATCAA+AGG - chr4.2:90691929-90691948 None:intergenic 40.0%
CTCCTCAAACTCTTCTTCTA+GGG - chr4.2:90691968-90691987 None:intergenic 40.0%
GAAAACATAACCAACCTTCC+AGG + chr4.2:90692855-90692874 MS.gene37647:CDS 40.0%
GAAGAGTTTGAGGAGGAAAA+TGG + chr4.2:90691973-90691992 MS.gene37647:CDS 40.0%
GCAAGTCATTGAGATTGTCA+AGG + chr4.2:90693327-90693346 MS.gene37647:CDS 40.0%
GCCTTTGCATGGAATCAAAA+AGG + chr4.2:90692788-90692807 MS.gene37647:CDS 40.0%
GTTCCACAACAAGTTGCAAT+TGG + chr4.2:90692060-90692079 MS.gene37647:CDS 40.0%
GTTGAACAACTTGTGATTGC+AGG + chr4.2:90693011-90693030 MS.gene37647:CDS 40.0%
GTTGCATATGAATCATCGGT+TGG + chr4.2:90693155-90693174 MS.gene37647:CDS 40.0%
TCACTAGCCATAAGAAGCTT+TGG - chr4.2:90692027-90692046 None:intergenic 40.0%
TCTTGACGCCAATAATGGTA+GGG - chr4.2:90692087-90692106 None:intergenic 40.0%
TGAACAACTTGTGATTGCAG+GGG + chr4.2:90693013-90693032 MS.gene37647:CDS 40.0%
TGTCATGAACAAGAGGAAGA+TGG - chr4.2:90693480-90693499 None:intergenic 40.0%
TTAATCAAAGGGCCTTTGCA+TGG + chr4.2:90692777-90692796 MS.gene37647:CDS 40.0%
TTCTTGACGCCAATAATGGT+AGG - chr4.2:90692088-90692107 None:intergenic 40.0%
! TATGAATCATCGGTTGGATC+GGG + chr4.2:90693161-90693180 MS.gene37647:CDS 40.0%
!! AGGTTGGTTATGTTTTCCCA+AGG - chr4.2:90692852-90692871 None:intergenic 40.0%
CCTAGAAGAAGAGTTTGAGG+AGG + chr4.2:90691966-90691985 MS.gene37647:CDS 45.0%
CCTCCTCAAACTCTTCTTCT+AGG - chr4.2:90691969-90691988 None:intergenic 45.0%
GAAGTGGCTAACATGTGGAA+TGG + chr4.2:90693299-90693318 MS.gene37647:CDS 45.0%
GACAGAGCAAAAAGCTTGCA+AGG - chr4.2:90693504-90693523 None:intergenic 45.0%
!! ATTGTCAAGGGTGCCATACT+TGG + chr4.2:90693340-90693359 MS.gene37647:CDS 45.0%
!! GGACCAATTGCAACTTGTTG+TGG - chr4.2:90692066-90692085 None:intergenic 45.0%
GAACAAAACACCCTTGGTGG+AGG + chr4.2:90692971-90692990 MS.gene37647:CDS 50.0%
GCAAGGCTGTCATGAACAAG+AGG - chr4.2:90693487-90693506 None:intergenic 50.0%
GGATTTGAACGGCGAAACCT+TGG + chr4.2:90692245-90692264 MS.gene37647:CDS 50.0%
GGCACTAGAGCTTACATCTC+CGG + chr4.2:90693550-90693569 MS.gene37647:CDS 50.0%
ATCGGTTGGATCGGGACCTT+TGG + chr4.2:90693169-90693188 MS.gene37647:CDS 55.0%
TGAACGGCGAAACCTTGGTG+TGG + chr4.2:90692250-90692269 MS.gene37647:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 90691883 90693583 90691883 ID=MS.gene37647
chr4.2 mRNA 90691883 90693583 90691883 ID=MS.gene37647.t1;Parent=MS.gene37647
chr4.2 exon 90691883 90693583 90691883 ID=MS.gene37647.t1.exon1;Parent=MS.gene37647.t1
chr4.2 CDS 90691883 90693583 90691883 ID=cds.MS.gene37647.t1;Parent=MS.gene37647.t1
Gene Sequence

>MS.gene37647

ATGTCTTCTCTAAGATCTACCATGTCATATAATTCTAAAACAACCTTTGATGAGAATCTTTGGGTGATTCATGTTCGAAAAACCCTAGAAGAAGAGTTTGAGGAGGAAAATGGTGAATTTTCTATATCCATTTTCAATGTGCCAAAGCTTCTTATGGCTAGTGATCCAAATTCTTATGTTCCACAACAAGTTGCAATTGGTCCCTACCATTATTGGCGTCAAGAACTCTTTGAAATGCAAACTCACAAGCTTGCATCAACAAAAAGATTCCAAAAACAACTACAAAGTGTCAAGATAGATAATCTTGTTGACCAATTGAGAAAGTTGGAACAAAAGATTAGAGCATGCTACCACAAATTCTTGGATTTGAACGGCGAAACCTTGGTGTGGATGATGATTGTTGATGCATCATTCATACTTGAGTTCCTTCAATTTTATGCCATGAAAGAAGAATCAAAAAAGATAATTTCTTCCAACATGTCTCATTTTGTAAACTATGTTGGGAGGAGATTATCTCCTAATGCAATTTTGAGGGATATTGTGATGCTTGAGAATCAAATTCCATTATTTGTTTTGAGAAAGATGCTTGAGTTAAAATTCTTTTCATCACAAGAAAATGCTGATGATGTGTTGATATTAATGTGTATAAGGTTGTTTAAAGAGATTTCACCCTTCAAGATGTTTGAAGAGTATCCTAACATTCAAGTCTTAGAGTGTGCACATTTGCTAGATTTTTTGTATGACATGATTGTGCCAAAATTAGAAAAACAACATGGCATCATTGAAGTTGAGATTCAACAAGAAGTGGATCAACAAGAAGGAGATGAAAAATCATCAAATGATTCCATCCATGTTAAGAAATTTTTGAGTATACTTTGGAAATTGCTTTCAAAGTTAATCAAAGGGCCTTTGCATGGAATCAAAAAGGTACTTATATCTGCACCTCTAAAAGTCCTTAAAAAGTTACCTTGGGAAAACATAACCAACCTTCCAGGAATCAAACTTGTAAAACAACCTATTGAACACCTTTTAAACTCTCAAAAGAAAGAAGAGGAAAAACCAAAAGATGAAAACTCTAGTACTCTAAAGAACAAAACACCCTTGGTGGAGGAAATCACTATTCCTTCTGTTGAACAACTTGTGATTGCAGGGGTTAATTTCTTACCTACAAATGGAAGCATATCAAGTATTAATTTTGATGCTAAAACAAAAACTTTTCATCTTCCCACAATTAGTTTGGATGTGAACACCGAAGTTTTTCTTAGAAACTTGGTTGCATATGAATCATCGGTTGGATCGGGACCTTTGGTTATAACTCGTTACACAGAATTGATGAATGGAATTATAGATTCCGAGAACGATGCAAAGATTCTAAGAGAAAAAGGGATTATTCTAAATCACTTAAAAAGTGATAAAGAAGTGGCTAACATGTGGAATGGAATGAGCAAGTCATTGAGATTGTCAAGGGTGCCATACTTGGATAAGACTATTGAAGAGGTTAACAAGAGTTATAATAATACAATGAAGATCAAGATTTGGAAATTTATGAAGTCTTATGTGTTTGGTTCATGGCAGTTTTTAACATTCTTGGCTACCATCTTCCTCTTGTTCATGACAGCCTTGCAAGCTTTTTGCTCTGTCTATACATGTCATCGCTTCTTTGACAAGGCACTAGAGCTTACATCTCCGGACACAAATTAA
Protein sequence

>MS.gene37647.t1

MSSLRSTMSYNSKTTFDENLWVIHVRKTLEEEFEEENGEFSISIFNVPKLLMASDPNSYVPQQVAIGPYHYWRQELFEMQTHKLASTKRFQKQLQSVKIDNLVDQLRKLEQKIRACYHKFLDLNGETLVWMMIVDASFILEFLQFYAMKEESKKIISSNMSHFVNYVGRRLSPNAILRDIVMLENQIPLFVLRKMLELKFFSSQENADDVLILMCIRLFKEISPFKMFEEYPNIQVLECAHLLDFLYDMIVPKLEKQHGIIEVEIQQEVDQQEGDEKSSNDSIHVKKFLSILWKLLSKLIKGPLHGIKKVLISAPLKVLKKLPWENITNLPGIKLVKQPIEHLLNSQKKEEEKPKDENSSTLKNKTPLVEEITIPSVEQLVIAGVNFLPTNGSISSINFDAKTKTFHLPTISLDVNTEVFLRNLVAYESSVGSGPLVITRYTELMNGIIDSENDAKILREKGIILNHLKSDKEVANMWNGMSKSLRLSRVPYLDKTIEEVNKSYNNTMKIKIWKFMKSYVFGSWQFLTFLATIFLLFMTALQAFCSVYTCHRFFDKALELTSPDTN