Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38293.t1 | XP_013454608.1 | 97.5 | 240 | 6 | 0 | 1 | 240 | 1 | 240 | 1.00E-116 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38293.t1 | Q93VG8 | 47.2 | 178 | 90 | 1 | 28 | 201 | 27 | 204 | 2.3e-48 | 193.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38293.t1 | A0A072UFW2 | 97.5 | 240 | 6 | 0 | 1 | 240 | 1 | 240 | 7.5e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050778 | MS.gene38293 | 0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene38293 | 0.807447 | 5.03E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene38293 | 0.80485 | 1.77E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene38293 | 0.80979 | 1.59E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene38293 | 0.828726 | 7.66E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene38293 | 0.805883 | 1.08E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene38293 | 0.828834 | 7.21E-55 | -1.69E-46 |
| MS.gene053132 | MS.gene38293 | 0.903368 | 3.73E-79 | -1.69E-46 |
| MS.gene053437 | MS.gene38293 | 0.83251 | 9.07E-56 | -1.69E-46 |
| MS.gene053630 | MS.gene38293 | 0.816507 | 5.34E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene38293 | 0.802573 | 5.26E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene38293 | 0.829937 | 3.89E-55 | -1.69E-46 |
| MS.gene056584 | MS.gene38293 | 0.820777 | 5.73E-53 | -1.69E-46 |
| MS.gene058851 | MS.gene38293 | 0.810247 | 1.27E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene38293 | 0.842683 | 2.23E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene38293 | 0.814845 | 1.25E-51 | -1.69E-46 |
| MS.gene060619 | MS.gene38293 | 0.808805 | 2.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38293.t1 | MTR_4g008530 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 0.0 | 497 |
| MS.gene38293.t1 | MTR_1g013110 | 73.793 | 145 | 38 | 0 | 25 | 169 | 15 | 159 | 6.34e-80 | 239 |
| MS.gene38293.t1 | MTR_3g106240 | 56.931 | 202 | 78 | 3 | 25 | 225 | 15 | 208 | 7.48e-78 | 234 |
| MS.gene38293.t1 | MTR_1g034490 | 53.158 | 190 | 85 | 2 | 4 | 192 | 18 | 204 | 9.69e-73 | 222 |
| MS.gene38293.t1 | MTR_1g022015 | 55.135 | 185 | 79 | 2 | 10 | 193 | 25 | 206 | 2.33e-70 | 216 |
| MS.gene38293.t1 | MTR_5g013040 | 56.209 | 153 | 67 | 0 | 19 | 171 | 15 | 167 | 1.05e-65 | 203 |
| MS.gene38293.t1 | MTR_4g100500 | 57.343 | 143 | 61 | 0 | 29 | 171 | 24 | 166 | 3.18e-63 | 197 |
| MS.gene38293.t1 | MTR_5g013040 | 55.556 | 153 | 65 | 1 | 19 | 171 | 15 | 164 | 4.31e-62 | 194 |
| MS.gene38293.t1 | MTR_4g113720 | 45.833 | 168 | 88 | 1 | 29 | 196 | 31 | 195 | 2.89e-56 | 179 |
| MS.gene38293.t1 | MTR_4g113720 | 45.833 | 168 | 88 | 1 | 29 | 196 | 31 | 195 | 3.25e-56 | 179 |
| MS.gene38293.t1 | MTR_2g054770 | 45.055 | 182 | 86 | 2 | 34 | 201 | 33 | 214 | 4.22e-56 | 179 |
| MS.gene38293.t1 | MTR_5g013040 | 48.980 | 147 | 68 | 2 | 31 | 176 | 20 | 160 | 2.98e-50 | 163 |
| MS.gene38293.t1 | MTR_1g100100 | 39.007 | 141 | 67 | 5 | 29 | 153 | 4 | 141 | 9.14e-25 | 98.2 |
| MS.gene38293.t1 | MTR_6g048290 | 37.857 | 140 | 71 | 5 | 29 | 153 | 4 | 142 | 1.12e-22 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38293.t1 | AT1G80690 | 68.306 | 183 | 53 | 4 | 12 | 193 | 1 | 179 | 2.02e-89 | 264 |
| MS.gene38293.t1 | AT1G80690 | 66.845 | 187 | 53 | 5 | 12 | 193 | 1 | 183 | 4.81e-87 | 258 |
| MS.gene38293.t1 | AT5G25170 | 66.463 | 164 | 55 | 0 | 25 | 188 | 16 | 179 | 2.00e-80 | 240 |
| MS.gene38293.t1 | AT2G25190 | 68.125 | 160 | 50 | 1 | 12 | 170 | 1 | 160 | 8.26e-79 | 237 |
| MS.gene38293.t1 | AT4G31980 | 65.000 | 160 | 55 | 1 | 12 | 170 | 1 | 160 | 8.21e-72 | 232 |
| MS.gene38293.t1 | AT1G47740 | 54.255 | 188 | 82 | 1 | 4 | 191 | 46 | 229 | 1.31e-71 | 220 |
| MS.gene38293.t1 | AT1G47740 | 54.255 | 188 | 82 | 1 | 4 | 191 | 46 | 229 | 1.31e-71 | 220 |
| MS.gene38293.t1 | AT1G47740 | 54.255 | 188 | 82 | 1 | 4 | 191 | 46 | 229 | 1.31e-71 | 220 |
| MS.gene38293.t1 | AT5G47310 | 54.483 | 145 | 66 | 0 | 27 | 171 | 28 | 172 | 2.30e-63 | 198 |
| MS.gene38293.t1 | AT4G17486 | 48.503 | 167 | 86 | 0 | 28 | 194 | 27 | 193 | 1.50e-62 | 195 |
| MS.gene38293.t1 | AT5G25170 | 61.940 | 134 | 51 | 0 | 55 | 188 | 2 | 135 | 1.21e-57 | 181 |
| MS.gene38293.t1 | AT4G17486 | 55.200 | 125 | 56 | 0 | 28 | 152 | 27 | 151 | 1.90e-54 | 174 |
| MS.gene38293.t1 | AT4G25660 | 33.333 | 174 | 110 | 4 | 49 | 220 | 38 | 207 | 1.64e-22 | 92.8 |
| MS.gene38293.t1 | AT4G25680 | 34.359 | 195 | 112 | 8 | 49 | 234 | 38 | 225 | 5.06e-22 | 91.7 |
| MS.gene38293.t1 | AT3G07090 | 33.846 | 130 | 68 | 5 | 29 | 149 | 8 | 128 | 4.61e-12 | 64.3 |
| MS.gene38293.t1 | AT3G07090 | 33.846 | 130 | 68 | 5 | 29 | 149 | 8 | 128 | 4.61e-12 | 64.3 |
Find 50 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAAACGGTGTCGTTTC+GGG | 0.198556 | 4.3:-86777261 | MS.gene38293:CDS |
| GGTCTTGGTGTTTATCATTC+TGG | 0.204257 | 4.3:-86777174 | MS.gene38293:CDS |
| AATTCAACGGTTATGCTTAC+TGG | 0.242093 | 4.3:-86777200 | MS.gene38293:CDS |
| CTTGAAACATTAACCTTGTT+TGG | 0.254573 | 4.3:+86773355 | None:intergenic |
| GATGCTTGTGTTAAGCTTAC+TGG | 0.272042 | 4.3:-86776184 | MS.gene38293:CDS |
| TTCACGAAACGGTGTCGTTT+CGG | 0.285864 | 4.3:-86777262 | MS.gene38293:CDS |
| AACGGTTATGCTTACTGGTT+TGG | 0.341414 | 4.3:-86777195 | MS.gene38293:CDS |
| CATGGTGTTGAATATGCATT+TGG | 0.344242 | 4.3:-86776406 | MS.gene38293:CDS |
| AATGTGAAGGGTTCAGATTT+AGG | 0.352563 | 4.3:-86776336 | MS.gene38293:CDS |
| TGGAAATTCTATACCTAGTT+GGG | 0.371552 | 4.3:-86776164 | MS.gene38293:CDS |
| CTGGAAATTCTATACCTAGT+TGG | 0.371967 | 4.3:-86776165 | MS.gene38293:CDS |
| GTTAATCGTCTTGCTAGAAT+TGG | 0.379939 | 4.3:-86776142 | MS.gene38293:intron |
| TATGCTTACTGGTTTGGTCT+TGG | 0.389422 | 4.3:-86777189 | MS.gene38293:CDS |
| TCACCGGCTTCTTCTAGCTC+TGG | 0.400392 | 4.3:-86773310 | MS.gene38293:CDS |
| CTGAACCCTTCACATTTCCT+TGG | 0.401139 | 4.3:+86776343 | None:intergenic |
| TTTAGGAAGACAATAATGAT+TGG | 0.412372 | 4.3:-86776319 | MS.gene38293:CDS |
| GTTTATCATTCTGGTGTTCA+AGG | 0.430967 | 4.3:-86777165 | MS.gene38293:intron |
| ATGGTGTTGAATATGCATTT+GGG | 0.452149 | 4.3:-86776405 | MS.gene38293:CDS |
| TGGTTCTCCTTCAAATATAC+CGG | 0.461685 | 4.3:+86776363 | None:intergenic |
| TTCTAGCTCTGGATTAAGAC+GGG | 0.465458 | 4.3:-86773299 | MS.gene38293:CDS |
| TGTCGTTTCGGGATCGGTGC+CGG | 0.468396 | 4.3:-86777250 | MS.gene38293:CDS |
| GCCGGTGAAGATGCTCTTGA+AGG | 0.484906 | 4.3:+86773325 | None:intergenic |
| AAACGGTGTCGTTTCGGGAT+CGG | 0.502303 | 4.3:-86777256 | MS.gene38293:CDS |
| GCACATGAGTATGCATCAAC+CGG | 0.506681 | 4.3:-86776382 | MS.gene38293:CDS |
| GATTAAGACGGGGAAGGAGC+AGG | 0.510693 | 4.3:-86773288 | MS.gene38293:CDS |
| GCATCAACCGGTATATTTGA+AGG | 0.517962 | 4.3:-86776370 | MS.gene38293:CDS |
| ACCTTCAAGAGCATCTTCAC+CGG | 0.528352 | 4.3:-86773326 | MS.gene38293:CDS |
| TTTGTTGAGTTCAATGTCAC+GGG | 0.532965 | 4.3:+86773457 | None:intergenic |
| TGTGGAAAAGTTTCACGAAA+CGG | 0.553507 | 4.3:-86777273 | MS.gene38293:CDS |
| CTTCTAGCTCTGGATTAAGA+CGG | 0.562003 | 4.3:-86773300 | MS.gene38293:CDS |
| GCAATAATCAAAGGTGAAGG+TGG | 0.569859 | 4.3:+86773253 | None:intergenic |
| ATATGGAAATTGGTGAAGTG+AGG | 0.607026 | 4.3:-86776288 | MS.gene38293:CDS |
| CGTCGGAGAATGTTACTATG+TGG | 0.607728 | 4.3:-86777291 | MS.gene38293:CDS |
| TAAACATCAAGATGAAGGGG+AGG | 0.607838 | 4.3:+86773231 | None:intergenic |
| GGAGAACCAAGGAAATGTGA+AGG | 0.613559 | 4.3:-86776349 | MS.gene38293:CDS |
| ATAATCAAAGGTGAAGGTGG+AGG | 0.615233 | 4.3:+86773256 | None:intergenic |
| AATCCAGAGCTAGAAGAAGC+CGG | 0.616375 | 4.3:+86773307 | None:intergenic |
| ATTAACAAGTGAACCAAACA+AGG | 0.618419 | 4.3:-86773368 | MS.gene38293:CDS |
| GAACTTGCTGCTGAGTACAA+AGG | 0.625237 | 4.3:-86776253 | MS.gene38293:CDS |
| GAAGGGGAGGCAATAATCAA+AGG | 0.625643 | 4.3:+86773244 | None:intergenic |
| TGGTGAAGTGAGGAGTGTGA+TGG | 0.628154 | 4.3:-86776278 | MS.gene38293:CDS |
| GCAAGACGATTAACCCAACT+AGG | 0.629110 | 4.3:+86776151 | None:intergenic |
| TGGTGTTGAATATGCATTTG+GGG | 0.634217 | 4.3:-86776404 | MS.gene38293:CDS |
| TACGATCTGACACAATTCAA+CGG | 0.645029 | 4.3:-86777213 | MS.gene38293:CDS |
| GAGGCAATAATCAAAGGTGA+AGG | 0.662473 | 4.3:+86773250 | None:intergenic |
| GAGAACCAAGGAAATGTGAA+GGG | 0.662717 | 4.3:-86776348 | MS.gene38293:CDS |
| TCTAGCTCTGGATTAAGACG+GGG | 0.680990 | 4.3:-86773298 | MS.gene38293:CDS |
| TCGTACACGTTAAGATACAC+CGG | 0.689501 | 4.3:+86777231 | None:intergenic |
| GCTCTGGATTAAGACGGGGA+AGG | 0.690217 | 4.3:-86773294 | MS.gene38293:CDS |
| GTATATTTGAAGGAGAACCA+AGG | 0.721199 | 4.3:-86776360 | MS.gene38293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTAAAATTAAT+TGG | + | chr4.3:86776279-86776298 | None:intergenic | 0.0% |
| !! | AAAAAATGTATAATAAAAGT+AGG | - | chr4.3:86776933-86776952 | MS.gene38293:intron | 10.0% |
| !! | ATAAATTGAAATAATTAGTT+AGG | - | chr4.3:86774534-86774553 | MS.gene38293:intron | 10.0% |
| !! | TTTATATGCATTTAAATATA+TGG | - | chr4.3:86775857-86775876 | MS.gene38293:intron | 10.0% |
| !!! | ACATTTCTATTTTTATTTTT+TGG | - | chr4.3:86774070-86774089 | MS.gene38293:intron | 10.0% |
| !!! | ATTTCAATTTATTTATTTCT+TGG | + | chr4.3:86774526-86774545 | None:intergenic | 10.0% |
| !!! | TATTAATTTTAAAATGCATA+AGG | - | chr4.3:86775746-86775765 | MS.gene38293:intron | 10.0% |
| !!! | TTTACATTTAATTTAAAGAA+AGG | - | chr4.3:86775709-86775728 | MS.gene38293:intron | 10.0% |
| !! | AAAATTTGAATCAAATACAT+CGG | - | chr4.3:86773734-86773753 | MS.gene38293:intron | 15.0% |
| !! | AGATCTTTGAATTAAAATTT+GGG | + | chr4.3:86776377-86776396 | None:intergenic | 15.0% |
| !! | TCTTTGTAACAAAAAAAAAT+AGG | - | chr4.3:86776903-86776922 | MS.gene38293:intron | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | + | chr4.3:86776087-86776106 | None:intergenic | 15.0% |
| !!! | AAAAGTATTTTACAAGTATT+AGG | + | chr4.3:86775646-86775665 | None:intergenic | 15.0% |
| !!! | ATTCAAAAAAATTTTTTACC+AGG | + | chr4.3:86776059-86776078 | None:intergenic | 15.0% |
| !!! | ATTTGTTAAAGACTTTTTTT+AGG | - | chr4.3:86774027-86774046 | MS.gene38293:intron | 15.0% |
| !!! | CAAAAAATGTATTTTTTCTT+GGG | - | chr4.3:86775220-86775239 | MS.gene38293:intron | 15.0% |
| !!! | CATAGTTTTTTTTTTTTTGA+AGG | - | chr4.3:86774803-86774822 | MS.gene38293:intron | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | + | chr4.3:86776088-86776107 | None:intergenic | 15.0% |
| !!! | TAATTTTAAAATGCATAAGT+TGG | - | chr4.3:86775749-86775768 | MS.gene38293:intron | 15.0% |
| !!! | TCAAAAAATGTATTTTTTCT+TGG | - | chr4.3:86775219-86775238 | MS.gene38293:intron | 15.0% |
| !!! | TCTATTTTTATTTTTTGGTT+TGG | - | chr4.3:86774075-86774094 | MS.gene38293:intron | 15.0% |
| !!! | TTCAAAAAAATTTTTTACCA+GGG | + | chr4.3:86776058-86776077 | None:intergenic | 15.0% |
| !!! | TTTGTTAAAGACTTTTTTTA+GGG | - | chr4.3:86774028-86774047 | MS.gene38293:intron | 15.0% |
| !!! | TTTTTACTTATATTTAAGAC+CGG | - | chr4.3:86773772-86773791 | MS.gene38293:intron | 15.0% |
| !! | AATATCTACGAAACAAAAAT+TGG | - | chr4.3:86775033-86775052 | MS.gene38293:intron | 20.0% |
| !! | AATTAAAAAAAACTGCAGAA+AGG | - | chr4.3:86776288-86776307 | MS.gene38293:CDS | 20.0% |
| !! | ACTTTATTACTTAGATTAGT+AGG | - | chr4.3:86773880-86773899 | MS.gene38293:intron | 20.0% |
| !! | ATTAAAAAAAACTGCAGAAA+GGG | - | chr4.3:86776289-86776308 | MS.gene38293:CDS | 20.0% |
| !! | ATTTCGATTTCTAAATGAAA+TGG | + | chr4.3:86773908-86773927 | None:intergenic | 20.0% |
| !! | CAGATCTTTGAATTAAAATT+TGG | + | chr4.3:86776378-86776397 | None:intergenic | 20.0% |
| !! | CTTTATTACTTAGATTAGTA+GGG | - | chr4.3:86773881-86773900 | MS.gene38293:intron | 20.0% |
| !! | GATCTTTGAATTAAAATTTG+GGG | + | chr4.3:86776376-86776395 | None:intergenic | 20.0% |
| !! | TAAAATAATACAACCAACAA+TGG | + | chr4.3:86775399-86775418 | None:intergenic | 20.0% |
| !! | TTCGGAAAAATTAAGAATTA+AGG | + | chr4.3:86773439-86773458 | None:intergenic | 20.0% |
| !!! | ACAATCTTTTGATAAGTTTT+AGG | - | chr4.3:86774847-86774866 | MS.gene38293:intron | 20.0% |
| !!! | ATTAGGCTAAAATATTCTTT+TGG | - | chr4.3:86776000-86776019 | MS.gene38293:intron | 20.0% |
| !!! | ATTTACATTTGCTATAAATG+TGG | - | chr4.3:86775103-86775122 | MS.gene38293:intron | 20.0% |
| !!! | GACTAAAAACAATTTTTTGT+CGG | - | chr4.3:86773857-86773876 | MS.gene38293:intron | 20.0% |
| !!! | GATCAAGTCAAATTTTTTAT+TGG | - | chr4.3:86775170-86775189 | MS.gene38293:intron | 20.0% |
| !!! | GATTGATATTTGAAATTTTG+AGG | - | chr4.3:86773983-86774002 | MS.gene38293:intron | 20.0% |
| !!! | TAATTTTAAAATGCATAAGG+TGG | - | chr4.3:86776554-86776573 | MS.gene38293:intron | 20.0% |
| !!! | TATTTTGTTTTTTCAGTTCA+TGG | - | chr4.3:86774125-86774144 | MS.gene38293:intron | 20.0% |
| ! | AAAATGTGAATAGATGATGT+GGG | - | chr4.3:86775558-86775577 | MS.gene38293:intron | 25.0% |
| ! | AACATTGCTTATATTATTGC+AGG | - | chr4.3:86777047-86777066 | MS.gene38293:intron | 25.0% |
| ! | AAGCAATGTTTATCTCAATA+AGG | + | chr4.3:86777037-86777056 | None:intergenic | 25.0% |
| ! | AATAATTAGTTAGGTGAAAG+TGG | - | chr4.3:86774543-86774562 | MS.gene38293:intron | 25.0% |
| ! | AATGATTGGAAAAACAGATA+TGG | - | chr4.3:86774244-86774263 | MS.gene38293:intron | 25.0% |
| ! | ATAATTAGTTAGGTGAAAGT+GGG | - | chr4.3:86774544-86774563 | MS.gene38293:intron | 25.0% |
| ! | ATTATAAGTCTTTCACCATT+TGG | - | chr4.3:86775367-86775386 | MS.gene38293:intron | 25.0% |
| ! | TAAATGATATAATTGCCATG+TGG | + | chr4.3:86776199-86776218 | None:intergenic | 25.0% |
| ! | TATACGCAATTAAATGACAT+TGG | - | chr4.3:86775613-86775632 | MS.gene38293:intron | 25.0% |
| ! | TCCCATGTATAAAAAAATGT+GGG | - | chr4.3:86775956-86775975 | MS.gene38293:intron | 25.0% |
| ! | TCTTGTACGTACAAATTATA+TGG | - | chr4.3:86776781-86776800 | MS.gene38293:intron | 25.0% |
| ! | TTAAAAAAAACTGCAGAAAG+GGG | - | chr4.3:86776290-86776309 | MS.gene38293:CDS | 25.0% |
| ! | TTCCCATGTATAAAAAAATG+TGG | - | chr4.3:86775955-86775974 | MS.gene38293:intron | 25.0% |
| ! | TTTACTCAACGTTGAATTTA+CGG | - | chr4.3:86773539-86773558 | MS.gene38293:intron | 25.0% |
| ! | TTTAGGAAGACAATAATGAT+TGG | - | chr4.3:86774230-86774249 | MS.gene38293:intron | 25.0% |
| !! | AATCAAATACATCGGATTTT+TGG | - | chr4.3:86773742-86773761 | MS.gene38293:intron | 25.0% |
| !! | TAATTAGTTTCTGTTTGACT+AGG | - | chr4.3:86774765-86774784 | MS.gene38293:intron | 25.0% |
| !! | TTTGTGAGATTCATTTTCAT+GGG | + | chr4.3:86776443-86776462 | None:intergenic | 25.0% |
| !! | TTTTGTGAGATTCATTTTCA+TGG | + | chr4.3:86776444-86776463 | None:intergenic | 25.0% |
| !!! | AATATAGTGAGTTTGAGTTT+TGG | - | chr4.3:86776031-86776050 | MS.gene38293:intron | 25.0% |
| !!! | ATAAGTTTTAGGCTGAATTT+AGG | - | chr4.3:86774858-86774877 | MS.gene38293:intron | 25.0% |
| !!! | GAGATTATAGTTGATAATGA+TGG | - | chr4.3:86775135-86775154 | MS.gene38293:intron | 25.0% |
| !!! | TAAGTTTTAGGCTGAATTTA+GGG | - | chr4.3:86774859-86774878 | MS.gene38293:intron | 25.0% |
| !!! | TCCCACATTTTTTTATACAT+GGG | + | chr4.3:86775960-86775979 | None:intergenic | 25.0% |
| !!! | TTCCCACATTTTTTTATACA+TGG | + | chr4.3:86775961-86775980 | None:intergenic | 25.0% |
| !!! | TTGCTTTTTTTTTCCTGTTT+TGG | - | chr4.3:86774477-86774496 | MS.gene38293:intron | 25.0% |
| AAATGAAACACTGAGCAATT+TGG | + | chr4.3:86774634-86774653 | None:intergenic | 30.0% | |
| AAGAGAAGAAAAAACATCGT+CGG | - | chr4.3:86773241-86773260 | MS.gene38293:CDS | 30.0% | |
| AATCAAGATATCATAGTCGT+TGG | + | chr4.3:86774693-86774712 | None:intergenic | 30.0% | |
| ACATGATCAATATCCAAAAC+AGG | + | chr4.3:86774493-86774512 | None:intergenic | 30.0% | |
| ATTAACAAGTGAACCAAACA+AGG | - | chr4.3:86777181-86777200 | MS.gene38293:CDS | 30.0% | |
| ATTAAGCAAATAGTCTCCAA+TGG | + | chr4.3:86775503-86775522 | None:intergenic | 30.0% | |
| CTTGAAACATTAACCTTGTT+TGG | + | chr4.3:86777197-86777216 | None:intergenic | 30.0% | |
| CTTGATCAAAATCTTCACAA+CGG | + | chr4.3:86775075-86775094 | None:intergenic | 30.0% | |
| GAAAATGTGAATAGATGATG+TGG | - | chr4.3:86775557-86775576 | MS.gene38293:intron | 30.0% | |
| GGAAAAACAGATATGGAAAT+TGG | - | chr4.3:86774251-86774270 | MS.gene38293:intron | 30.0% | |
| GGTGATAGATATCTTAATTC+CGG | + | chr4.3:86777016-86777035 | None:intergenic | 30.0% | |
| GTGTCTTGTACGTATAAATT+AGG | - | chr4.3:86775983-86776002 | MS.gene38293:intron | 30.0% | |
| TAAAAAAAACTGCAGAAAGG+GGG | - | chr4.3:86776291-86776310 | MS.gene38293:CDS | 30.0% | |
| TAATACAACCAACAATGGAT+TGG | + | chr4.3:86775394-86775413 | None:intergenic | 30.0% | |
| TCAAACTCACTATATTTGCA+GGG | + | chr4.3:86776027-86776046 | None:intergenic | 30.0% | |
| TGACAAATCAGCAAAAAAGT+GGG | + | chr4.3:86776125-86776144 | None:intergenic | 30.0% | |
| TGGAAATTCTATACCTAGTT+GGG | - | chr4.3:86774385-86774404 | MS.gene38293:intron | 30.0% | |
| ! | ATGGTGTTGAATATGCATTT+GGG | - | chr4.3:86774144-86774163 | MS.gene38293:intron | 30.0% |
| ! | ATTAGTCACTTTCACAGATT+TGG | + | chr4.3:86774749-86774768 | None:intergenic | 30.0% |
| ! | GAACTTTTATGCTAAACTTC+CGG | - | chr4.3:86776994-86777013 | MS.gene38293:intron | 30.0% |
| ! | TGCAATTTTCCATTTCTTAG+CGG | - | chr4.3:86776850-86776869 | MS.gene38293:intron | 30.0% |
| ! | TTTTGTTGAGTTCAATGTCA+CGG | + | chr4.3:86777096-86777115 | None:intergenic | 30.0% |
| !! | TGTTTTGGATATTGATCATG+TGG | - | chr4.3:86774492-86774511 | MS.gene38293:intron | 30.0% |
| !!! | TGTTTTTTAAAATGGTCCCT+GGG | - | chr4.3:86776099-86776118 | MS.gene38293:intron | 30.0% |
| !!! | TTGTTTTTTAAAATGGTCCC+TGG | - | chr4.3:86776098-86776117 | MS.gene38293:intron | 30.0% |
| AACTTTCCTATTCCGAGAAA+AGG | + | chr4.3:86774894-86774913 | None:intergenic | 35.0% | |
| AAGTGAATGCCTTTCTTTAG+TGG | + | chr4.3:86776526-86776545 | None:intergenic | 35.0% | |
| AATCCTTAAACACGTGATCA+GGG | + | chr4.3:86775350-86775369 | None:intergenic | 35.0% | |
| AATGTGAAGGGTTCAGATTT+AGG | - | chr4.3:86774213-86774232 | MS.gene38293:intron | 35.0% | |
| AATTCAACGGTTATGCTTAC+TGG | - | chr4.3:86773349-86773368 | MS.gene38293:CDS | 35.0% | |
| ACATATCAACCGCTAAGAAA+TGG | + | chr4.3:86776862-86776881 | None:intergenic | 35.0% | |
| AGCTAGAATTCATCACCATT+TGG | + | chr4.3:86773802-86773821 | None:intergenic | 35.0% | |
| ATATGGAAATTGGTGAAGTG+AGG | - | chr4.3:86774261-86774280 | MS.gene38293:intron | 35.0% | |
| ATCAAAATCCTCAAGACCAT+TGG | - | chr4.3:86775484-86775503 | MS.gene38293:intron | 35.0% | |
| ATGATATAATTGCCATGTGG+AGG | + | chr4.3:86776196-86776215 | None:intergenic | 35.0% | |
| CTCAAACTCACTATATTTGC+AGG | + | chr4.3:86776028-86776047 | None:intergenic | 35.0% | |
| CTGGAAATTCTATACCTAGT+TGG | - | chr4.3:86774384-86774403 | MS.gene38293:intron | 35.0% | |
| GTATATTTGAAGGAGAACCA+AGG | - | chr4.3:86774189-86774208 | MS.gene38293:intron | 35.0% | |
| GTGACAAATCAGCAAAAAAG+TGG | + | chr4.3:86776126-86776145 | None:intergenic | 35.0% | |
| GTTAATCGTCTTGCTAGAAT+TGG | - | chr4.3:86774407-86774426 | MS.gene38293:intron | 35.0% | |
| GTTTATCATTCTGGTGTTCA+AGG | - | chr4.3:86773384-86773403 | MS.gene38293:CDS | 35.0% | |
| TAATCCTTAAACACGTGATC+AGG | + | chr4.3:86775351-86775370 | None:intergenic | 35.0% | |
| TACGATCTGACACAATTCAA+CGG | - | chr4.3:86773336-86773355 | MS.gene38293:CDS | 35.0% | |
| TCTAGCTAAAGGTGAATCAT+TGG | - | chr4.3:86773815-86773834 | MS.gene38293:intron | 35.0% | |
| TGAATCTACAATCTCTACAC+AGG | - | chr4.3:86776396-86776415 | MS.gene38293:CDS | 35.0% | |
| TGGTTCTCCTTCAAATATAC+CGG | + | chr4.3:86774189-86774208 | None:intergenic | 35.0% | |
| TGTGGAAAAGTTTCACGAAA+CGG | - | chr4.3:86773276-86773295 | MS.gene38293:CDS | 35.0% | |
| TTCATCACCATTTGGTTATC+CGG | + | chr4.3:86773794-86773813 | None:intergenic | 35.0% | |
| TTTGATATGGTGTGCAGATT+TGG | + | chr4.3:86776488-86776507 | None:intergenic | 35.0% | |
| TTTGTTGAGTTCAATGTCAC+GGG | + | chr4.3:86777095-86777114 | None:intergenic | 35.0% | |
| ! | CATGGTGTTGAATATGCATT+TGG | - | chr4.3:86774143-86774162 | MS.gene38293:intron | 35.0% |
| ! | CTTTAGATCTAGGATCTATG+TGG | - | chr4.3:86773463-86773482 | MS.gene38293:CDS | 35.0% |
| ! | GGGATATAAGAACCTTTTCT+CGG | - | chr4.3:86774879-86774898 | MS.gene38293:intron | 35.0% |
| ! | TAAGAACCTTTTCTCGGAAT+AGG | - | chr4.3:86774885-86774904 | MS.gene38293:intron | 35.0% |
| ! | TCCTAGATCTAAAGCAAGTT+CGG | + | chr4.3:86773457-86773476 | None:intergenic | 35.0% |
| ! | TCTCTCTCTTTCTAAAAGTG+TGG | - | chr4.3:86773505-86773524 | MS.gene38293:intron | 35.0% |
| ! | TGCTACACGTTGAATTTGTT+AGG | - | chr4.3:86775522-86775541 | MS.gene38293:intron | 35.0% |
| ! | TGGTGATGAATTCTAGCTAA+AGG | - | chr4.3:86773804-86773823 | MS.gene38293:intron | 35.0% |
| ! | TGGTGTTGAATATGCATTTG+GGG | - | chr4.3:86774145-86774164 | MS.gene38293:intron | 35.0% |
| ! | TTTAAGACCGGATAACCAAA+TGG | - | chr4.3:86773784-86773803 | MS.gene38293:intron | 35.0% |
| !! | GGGAGAGTTACTTTAGAATT+AGG | - | chr4.3:86775578-86775597 | MS.gene38293:intron | 35.0% |
| ACATTTGTCATGTGTGACGT+AGG | - | chr4.3:86776819-86776838 | MS.gene38293:intron | 40.0% | |
| ATAATCAAAGGTGAAGGTGG+AGG | + | chr4.3:86777296-86777315 | None:intergenic | 40.0% | |
| ATCCTTAAACACGTGATCAG+GGG | + | chr4.3:86775349-86775368 | None:intergenic | 40.0% | |
| CATTTGGACCAATCCATTGT+TGG | - | chr4.3:86775383-86775402 | MS.gene38293:intron | 40.0% | |
| GAGAACCAAGGAAATGTGAA+GGG | - | chr4.3:86774201-86774220 | MS.gene38293:intron | 40.0% | |
| GAGCAACATGTAAGCAGTAA+CGG | - | chr4.3:86774566-86774585 | MS.gene38293:intron | 40.0% | |
| GAGGCAATAATCAAAGGTGA+AGG | + | chr4.3:86777302-86777321 | None:intergenic | 40.0% | |
| GATGCTTGTGTTAAGCTTAC+TGG | - | chr4.3:86774365-86774384 | MS.gene38293:intron | 40.0% | |
| GCAATAATCAAAGGTGAAGG+TGG | + | chr4.3:86777299-86777318 | None:intergenic | 40.0% | |
| GCATCAACCGGTATATTTGA+AGG | - | chr4.3:86774179-86774198 | MS.gene38293:intron | 40.0% | |
| TCGTACACGTTAAGATACAC+CGG | + | chr4.3:86773321-86773340 | None:intergenic | 40.0% | |
| TGTAAGCAGTAACGGTACAT+CGG | - | chr4.3:86774574-86774593 | MS.gene38293:intron | 40.0% | |
| ! | AACGGTTATGCTTACTGGTT+TGG | - | chr4.3:86773354-86773373 | MS.gene38293:CDS | 40.0% |
| ! | AATAGTCTCCAATGGTCTTG+AGG | + | chr4.3:86775495-86775514 | None:intergenic | 40.0% |
| ! | CACAAGCATCGTTGCAAAAA+TGG | + | chr4.3:86774355-86774374 | None:intergenic | 40.0% |
| ! | GAGATTCATTTTCATGGGTG+TGG | + | chr4.3:86776438-86776457 | None:intergenic | 40.0% |
| ! | TCCGAACTTGCTTTAGATCT+AGG | - | chr4.3:86773453-86773472 | MS.gene38293:CDS | 40.0% |
| ! | TTCTTAGCGGTTGATATGTG+TGG | - | chr4.3:86776863-86776882 | MS.gene38293:intron | 40.0% |
| !! | CAACAATGGATTGGTCCAAA+TGG | + | chr4.3:86775385-86775404 | None:intergenic | 40.0% |
| !! | CTTCTAGCTCTGGATTAAGA+CGG | - | chr4.3:86777249-86777268 | MS.gene38293:CDS | 40.0% |
| !! | GGTCTTGGTGTTTATCATTC+TGG | - | chr4.3:86773375-86773394 | MS.gene38293:CDS | 40.0% |
| !! | TATGCTTACTGGTTTGGTCT+TGG | - | chr4.3:86773360-86773379 | MS.gene38293:CDS | 40.0% |
| !! | TTCTAGCTCTGGATTAAGAC+GGG | - | chr4.3:86777250-86777269 | MS.gene38293:CDS | 40.0% |
| !! | TTTTCATGGGTGTGGTTTTG+AGG | + | chr4.3:86776430-86776449 | None:intergenic | 40.0% |
| !!! | CTGGGTTTTGGGTTTTGATA+TGG | + | chr4.3:86776501-86776520 | None:intergenic | 40.0% |
| AACCCCTGATCACGTGTTTA+AGG | - | chr4.3:86775344-86775363 | MS.gene38293:intron | 45.0% | |
| AATCCAGAGCTAGAAGAAGC+CGG | + | chr4.3:86777245-86777264 | None:intergenic | 45.0% | |
| ATGCCTTTCTTTAGTGGCAC+TGG | + | chr4.3:86776520-86776539 | None:intergenic | 45.0% | |
| CATAGTCGTTGGATCGAGAT+TGG | + | chr4.3:86774682-86774701 | None:intergenic | 45.0% | |
| CGTCGGAGAATGTTACTATG+TGG | - | chr4.3:86773258-86773277 | MS.gene38293:CDS | 45.0% | |
| CTGAACCCTTCACATTTCCT+TGG | + | chr4.3:86774209-86774228 | None:intergenic | 45.0% | |
| GAAGGGGAGGCAATAATCAA+AGG | + | chr4.3:86777308-86777327 | None:intergenic | 45.0% | |
| GCAAGACGATTAACCCAACT+AGG | + | chr4.3:86774401-86774420 | None:intergenic | 45.0% | |
| GCACATGAGTATGCATCAAC+CGG | - | chr4.3:86774167-86774186 | MS.gene38293:intron | 45.0% | |
| GGAGAACCAAGGAAATGTGA+AGG | - | chr4.3:86774200-86774219 | MS.gene38293:intron | 45.0% | |
| TCAGTTGGGTCGAGATTAGA+CGG | - | chr4.3:86774607-86774626 | MS.gene38293:intron | 45.0% | |
| TGCCTTTCTTTAGTGGCACT+GGG | + | chr4.3:86776519-86776538 | None:intergenic | 45.0% | |
| TTGTCACATTTCTGCCTACG+TGG | - | chr4.3:86776139-86776158 | MS.gene38293:intron | 45.0% | |
| ! | AACACGTGATCAGGGGTTTT+TGG | + | chr4.3:86775342-86775361 | None:intergenic | 45.0% |
| ! | AACCCAGTGCCACTAAAGAA+AGG | - | chr4.3:86776514-86776533 | MS.gene38293:intron | 45.0% |
| !! | CTTTAGTGGCACTGGGTTTT+GGG | + | chr4.3:86776512-86776531 | None:intergenic | 45.0% |
| !! | GAACTTGCTGCTGAGTACAA+AGG | - | chr4.3:86774296-86774315 | MS.gene38293:intron | 45.0% |
| !! | TCTAGCTCTGGATTAAGACG+GGG | - | chr4.3:86777251-86777270 | MS.gene38293:CDS | 45.0% |
| !! | TCTTTAGTGGCACTGGGTTT+TGG | + | chr4.3:86776513-86776532 | None:intergenic | 45.0% |
| !! | TGAGTTTGAGTTTTGGTCCC+TGG | - | chr4.3:86776038-86776057 | MS.gene38293:intron | 45.0% |
| !! | TTCACGAAACGGTGTCGTTT+CGG | - | chr4.3:86773287-86773306 | MS.gene38293:CDS | 45.0% |
| !!! | AAATTTTTTGTTTTTTAAAA+TGG | - | chr4.3:86776091-86776110 | MS.gene38293:intron | 5.0% |
| AAGCAGTAACGGTACATCGG+AGG | - | chr4.3:86774577-86774596 | MS.gene38293:intron | 50.0% | |
| ACGTCTTGCTAACGAGTGTC+TGG | - | chr4.3:86773662-86773681 | MS.gene38293:intron | 50.0% | |
| ATCAGCAAAAAAGTGGGCCC+AGG | + | chr4.3:86776119-86776138 | None:intergenic | 50.0% | |
| ATCGGAGGTTGTTGCTCAGT+TGG | - | chr4.3:86774592-86774611 | MS.gene38293:intron | 50.0% | |
| ATTGCCATGTGGAGGACATG+TGG | + | chr4.3:86776188-86776207 | None:intergenic | 50.0% | |
| CGTCTTGCTAACGAGTGTCT+GGG | - | chr4.3:86773663-86773682 | MS.gene38293:intron | 50.0% | |
| GTCTTGCTAACGAGTGTCTG+GGG | - | chr4.3:86773664-86773683 | MS.gene38293:intron | 50.0% | |
| TCAGCAAAAAAGTGGGCCCA+GGG | + | chr4.3:86776118-86776137 | None:intergenic | 50.0% | |
| TCGGAGGTTGTTGCTCAGTT+GGG | - | chr4.3:86774593-86774612 | MS.gene38293:intron | 50.0% | |
| ! | TGGTGAAGTGAGGAGTGTGA+TGG | - | chr4.3:86774271-86774290 | MS.gene38293:intron | 50.0% |
| !! | AAACGGTGTCGTTTCGGGAT+CGG | - | chr4.3:86773293-86773312 | MS.gene38293:CDS | 50.0% |
| !! | TCACGAAACGGTGTCGTTTC+GGG | - | chr4.3:86773288-86773307 | MS.gene38293:CDS | 50.0% |
| ACAGTCAGCAACTGCCACGT+AGG | + | chr4.3:86776156-86776175 | None:intergenic | 55.0% | |
| GATTAAGACGGGGAAGGAGC+AGG | - | chr4.3:86777261-86777280 | MS.gene38293:CDS | 55.0% | |
| GTTGCCACATGTCCTCCACA+TGG | - | chr4.3:86776181-86776200 | MS.gene38293:CDS | 55.0% | |
| ! | GCTCTGGATTAAGACGGGGA+AGG | - | chr4.3:86777255-86777274 | MS.gene38293:CDS | 55.0% |
| !! | TCACCGGCTTCTTCTAGCTC+TGG | - | chr4.3:86777239-86777258 | MS.gene38293:CDS | 55.0% |
| ! | TGTCGTTTCGGGATCGGTGC+CGG | - | chr4.3:86773299-86773318 | MS.gene38293:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 86773237 | 86777334 | 86773237 | ID=MS.gene38293 |
| chr4.3 | mRNA | 86773237 | 86777334 | 86773237 | ID=MS.gene38293.t1;Parent=MS.gene38293 |
| chr4.3 | exon | 86777166 | 86777334 | 86777166 | ID=MS.gene38293.t1.exon1;Parent=MS.gene38293.t1 |
| chr4.3 | CDS | 86777166 | 86777334 | 86777166 | ID=cds.MS.gene38293.t1;Parent=MS.gene38293.t1 |
| chr4.3 | exon | 86776143 | 86776430 | 86776143 | ID=MS.gene38293.t1.exon2;Parent=MS.gene38293.t1 |
| chr4.3 | CDS | 86776143 | 86776430 | 86776143 | ID=cds.MS.gene38293.t1;Parent=MS.gene38293.t1 |
| chr4.3 | exon | 86773237 | 86773502 | 86773237 | ID=MS.gene38293.t1.exon3;Parent=MS.gene38293.t1 |
| chr4.3 | CDS | 86773237 | 86773502 | 86773237 | ID=cds.MS.gene38293.t1;Parent=MS.gene38293.t1 |
| Gene Sequence |
| Protein sequence |
